AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene026676

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene026676.t1 MTR_1g029420 98.986 592 6 0 1 592 1 592 0.0 1219
MS.gene026676.t1 MTR_3g089055 70.451 599 136 7 1 592 6 570 0.0 816
MS.gene026676.t1 MTR_3g089055 70.451 599 136 7 1 592 1 565 0.0 815
MS.gene026676.t1 MTR_5g097480 55.946 370 163 0 223 592 175 544 1.73e-159 467
MS.gene026676.t1 MTR_2g082090 43.364 535 290 3 70 591 44 578 8.09e-150 444
MS.gene026676.t1 MTR_3g056110 50.270 370 184 0 223 592 173 542 6.36e-142 422
MS.gene026676.t1 MTR_5g094450 44.632 475 229 7 123 592 87 532 8.39e-137 409
MS.gene026676.t1 MTR_4g133660 42.576 458 231 6 137 591 114 542 1.28e-131 396
MS.gene026676.t1 MTR_2g026250 46.631 371 197 1 223 592 226 596 2.78e-125 382
MS.gene026676.t1 MTR_7g057230 38.193 487 259 12 123 591 194 656 1.12e-81 270
MS.gene026676.t1 MTR_7g027190 39.175 388 204 6 224 592 299 673 2.44e-80 266
MS.gene026676.t1 MTR_6g047750 39.130 391 196 10 223 592 293 662 1.15e-74 251
MS.gene026676.t1 MTR_3g065980 36.292 383 213 8 226 592 173 540 9.02e-69 233
MS.gene026676.t1 MTR_7g074650 38.251 366 211 6 228 592 441 792 3.51e-66 231
MS.gene026676.t1 MTR_4g064160 32.703 370 248 1 223 591 314 683 1.16e-63 222
MS.gene026676.t1 MTR_8g442410 34.127 378 230 7 226 592 156 525 3.64e-62 214
MS.gene026676.t1 MTR_7g062120 29.904 418 279 3 189 592 323 740 3.85e-62 219
MS.gene026676.t1 MTR_4g104020 32.199 382 237 5 224 592 148 520 1.84e-60 209
MS.gene026676.t1 MTR_4g064200 33.062 369 242 4 225 591 284 649 3.54e-60 212
MS.gene026676.t1 MTR_4g097080 30.952 378 248 6 223 592 131 503 1.37e-58 204
MS.gene026676.t1 MTR_3g022830 29.257 417 239 4 226 592 26 436 1.61e-57 199
MS.gene026676.t1 MTR_4g064180 30.357 392 268 3 203 589 232 623 2.94e-56 201
MS.gene026676.t1 MTR_4g064120 29.337 392 272 3 203 589 232 623 1.43e-55 199
MS.gene026676.t1 MTR_4g064150 28.934 394 275 3 203 591 339 732 2.25e-55 200
MS.gene026676.t1 MTR_2g097410 29.412 374 257 4 223 591 369 740 3.60e-54 196
MS.gene026676.t1 MTR_2g097390 30.108 372 253 3 223 591 273 640 4.16e-54 195
MS.gene026676.t1 MTR_2g097310 30.108 372 253 3 223 591 270 637 4.40e-54 195
MS.gene026676.t1 MTR_5g009080 28.837 430 239 7 224 592 55 478 5.37e-54 191
MS.gene026676.t1 MTR_2g097350 31.016 374 247 5 223 591 272 639 6.84e-54 194
MS.gene026676.t1 MTR_4g076020 35.040 371 207 11 228 592 87 429 1.05e-53 189
MS.gene026676.t1 MTR_4g102790 34.293 382 224 13 225 591 292 661 4.11e-53 192
MS.gene026676.t1 MTR_5g015490 30.749 387 249 9 220 592 109 490 1.17e-52 187
MS.gene026676.t1 MTR_2g097467 28.117 409 281 4 187 591 254 653 1.41e-52 191
MS.gene026676.t1 MTR_2g097473 28.676 408 281 7 187 591 253 653 2.82e-51 187
MS.gene026676.t1 MTR_2g097463 26.316 456 321 5 148 591 202 654 4.94e-50 184
MS.gene026676.t1 MTR_4g077760 31.183 372 241 7 226 592 194 555 5.05e-49 179
MS.gene026676.t1 MTR_1g069725 32.275 378 221 12 225 591 109 462 8.36e-47 171
MS.gene026676.t1 MTR_3g072710 32.316 393 229 11 224 591 119 499 8.40e-47 172
MS.gene026676.t1 MTR_2g089100 29.545 396 249 7 223 591 50 442 1.12e-46 171
MS.gene026676.t1 MTR_2g099110 30.077 389 242 8 224 592 73 451 3.94e-46 169
MS.gene026676.t1 MTR_1g096030 29.975 397 234 12 224 592 79 459 3.32e-45 166
MS.gene026676.t1 MTR_5g015950 26.506 415 257 7 223 591 33 445 2.26e-41 155
MS.gene026676.t1 MTR_3g053270 26.506 415 257 7 223 591 33 445 2.26e-41 155
MS.gene026676.t1 MTR_2g097380 29.934 304 194 3 241 543 240 525 6.38e-41 156
MS.gene026676.t1 MTR_5g058860 30.512 449 287 16 161 591 55 496 1.49e-40 154
MS.gene026676.t1 MTR_4g095500 26.699 412 258 7 223 591 57 467 7.89e-37 143
MS.gene026676.t1 MTR_2g034250 24.737 380 268 7 226 592 211 585 2.52e-31 129
MS.gene026676.t1 MTR_4g076140 32.444 225 145 2 224 447 47 265 3.09e-30 124
MS.gene026676.t1 MTR_4g076140 39.333 150 90 1 444 592 320 469 1.07e-29 122
MS.gene026676.t1 MTR_2g034280 24.934 381 263 8 226 592 204 575 1.65e-27 117
MS.gene026676.t1 MTR_2g034260 24.808 391 253 11 226 592 211 584 2.03e-27 117
MS.gene026676.t1 MTR_0092s0100 27.660 376 243 12 226 592 373 728 3.33e-25 110
MS.gene026676.t1 MTR_0092s0100 27.660 376 243 12 226 592 376 731 3.80e-25 110
MS.gene026676.t1 MTR_8g093070 28.125 384 232 15 225 591 139 495 1.51e-24 107
MS.gene026676.t1 MTR_4g026485 26.396 394 266 12 205 592 249 624 1.62e-24 108
MS.gene026676.t1 MTR_8g020840 24.938 401 255 16 220 592 166 548 1.54e-23 105
MS.gene026676.t1 MTR_7g109580 24.211 380 264 11 224 592 188 554 1.40e-21 99.0
MS.gene026676.t1 MTR_3g022580 32.716 162 103 2 431 592 28 183 2.77e-19 86.3
MS.gene026676.t1 MTR_1g086970 26.736 288 185 11 315 592 207 478 3.50e-18 88.2
MS.gene026676.t1 MTR_3g022005 39.785 93 56 0 500 592 33 125 3.68e-14 70.1
MS.gene026676.t1 MTR_4g074310 31.156 199 95 5 265 458 35 196 7.09e-13 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene026676.t1 AT1G21450 61.857 603 194 14 1 592 16 593 0.0 694
MS.gene026676.t1 AT5G48150 51.429 455 199 6 147 592 49 490 2.82e-159 465
MS.gene026676.t1 AT5G48150 51.429 455 199 6 147 592 49 490 2.82e-159 465
MS.gene026676.t1 AT5G48150 51.429 455 199 6 147 592 49 490 2.82e-159 465
MS.gene026676.t1 AT5G48150 51.429 455 199 6 147 592 49 490 2.82e-159 465
MS.gene026676.t1 AT1G50600 53.784 370 171 0 223 592 157 526 1.17e-145 431
MS.gene026676.t1 AT1G50600 53.784 370 171 0 223 592 228 597 7.24e-145 432
MS.gene026676.t1 AT1G50600 53.784 370 171 0 223 592 232 601 9.53e-145 432
MS.gene026676.t1 AT2G04890 53.514 370 165 1 223 592 51 413 4.50e-142 418
MS.gene026676.t1 AT4G17230 50.541 370 183 0 223 592 156 525 1.67e-132 398
MS.gene026676.t1 AT4G17230 50.541 370 183 0 223 592 156 525 1.67e-132 398
MS.gene026676.t1 AT5G52510 38.961 385 210 8 223 592 266 640 4.73e-79 262
MS.gene026676.t1 AT3G03450 38.032 376 210 9 226 592 184 545 1.56e-71 240
MS.gene026676.t1 AT1G66350 37.028 397 223 10 202 592 131 506 3.40e-69 233
MS.gene026676.t1 AT3G54220 38.211 369 208 8 228 591 296 649 2.44e-67 231
MS.gene026676.t1 AT1G07530 35.040 371 239 2 223 591 394 764 2.85e-67 233
MS.gene026676.t1 AT5G17490 38.133 375 209 10 224 592 159 516 1.55e-66 226
MS.gene026676.t1 AT5G59450 30.982 397 258 5 203 592 211 598 2.66e-62 216
MS.gene026676.t1 AT1G14920 35.389 373 219 9 226 592 173 529 3.61e-62 214
MS.gene026676.t1 AT2G29060 29.581 453 300 6 148 591 212 654 3.28e-59 209
MS.gene026676.t1 AT2G01570 35.092 379 212 11 226 592 225 581 5.05e-59 207
MS.gene026676.t1 AT2G29060 29.581 453 300 6 148 591 249 691 5.39e-59 209
MS.gene026676.t1 AT5G66770 35.121 373 227 8 226 592 221 584 6.29e-59 207
MS.gene026676.t1 AT3G46600 30.458 371 256 2 223 592 2 371 4.27e-56 194
MS.gene026676.t1 AT2G37650 29.919 371 257 2 223 592 333 701 6.64e-56 201
MS.gene026676.t1 AT2G37650 29.919 371 257 2 223 592 345 713 8.57e-56 201
MS.gene026676.t1 AT3G46600 29.974 387 269 2 207 592 194 579 2.81e-55 197
MS.gene026676.t1 AT5G41920 32.000 425 252 11 175 592 6 400 3.04e-55 192
MS.gene026676.t1 AT3G46600 29.974 387 269 2 207 592 162 547 4.43e-55 196
MS.gene026676.t1 AT2G29065 30.952 378 252 6 223 591 250 627 3.77e-54 195
MS.gene026676.t1 AT4G37650 29.138 429 260 12 191 592 118 529 1.50e-52 188
MS.gene026676.t1 AT1G07520 29.894 378 255 7 223 591 152 528 9.34e-52 186
MS.gene026676.t1 AT1G07520 29.894 378 255 7 223 591 152 528 9.34e-52 186
MS.gene026676.t1 AT1G07520 29.894 378 255 7 223 591 316 692 2.63e-51 188
MS.gene026676.t1 AT1G07520 29.894 378 255 7 223 591 317 693 2.83e-51 188
MS.gene026676.t1 AT3G50650 29.325 474 282 11 157 592 84 542 1.56e-49 180
MS.gene026676.t1 AT1G63100 32.565 347 214 7 225 563 252 586 1.44e-43 165
MS.gene026676.t1 AT1G63100 32.565 347 214 7 225 563 277 611 1.78e-43 165
MS.gene026676.t1 AT1G55580 27.845 413 246 9 223 592 42 445 1.19e-41 156
MS.gene026676.t1 AT4G08250 28.947 380 249 9 224 591 106 476 4.82e-40 152
MS.gene026676.t1 AT3G49950 26.410 390 256 11 223 591 28 407 5.77e-36 139
MS.gene026676.t1 AT1G50420 35.714 210 126 2 224 430 56 259 1.28e-33 134
MS.gene026676.t1 AT1G50420 38.411 151 90 2 444 592 330 479 7.21e-27 114
MS.gene026676.t1 AT3G13840 26.425 386 253 11 220 592 143 510 6.68e-25 108
MS.gene026676.t1 AT2G45160 26.774 310 199 9 295 592 346 639 4.00e-20 95.1
MS.gene026676.t1 AT3G60630 25.000 348 232 10 258 592 291 622 4.68e-20 94.7
MS.gene026676.t1 AT5G67411 33.668 199 119 7 342 529 2 198 6.31e-18 82.8
MS.gene026676.t1 AT4G00150 23.989 371 246 13 230 592 212 554 8.41e-17 84.3

Find 154 sgRNAs with CRISPR-Local

Find 164 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAGAAATCTGATTCAAAAT+TGG 0.173475 1.2:+15309439 None:intergenic
CAGGCAGTTGGTTTCAATTC+AGG 0.191357 1.2:-15309051 MS.gene026676:CDS
TCCACAACTGTCACAAGTTT+TGG 0.256449 1.2:+15308432 None:intergenic
TAGAAGCAAGTGTTTGTATC+AGG 0.258688 1.2:+15308760 None:intergenic
CTGATAGAACCGTCTAGTTC+TGG 0.260300 1.2:-15309596 MS.gene026676:CDS
TGCCAAGCTATACTCGTTAA+AGG 0.281634 1.2:-15309747 MS.gene026676:CDS
TGATACAAACACTTGCTTCT+AGG 0.282847 1.2:-15308758 MS.gene026676:CDS
AACAGATCGTTGCACGGATT+CGG 0.283044 1.2:+15308692 None:intergenic
GGAAGGACTTGCGGCTCGTT+TGG 0.307317 1.2:-15308994 MS.gene026676:CDS
ACAGATCGTTGCACGGATTC+GGG 0.312714 1.2:+15308693 None:intergenic
GCGATTGAAAATACAAGAAT+TGG 0.316595 1.2:-15309375 MS.gene026676:CDS
GCGGCTCGTTTGGCTTCATC+GGG 0.324337 1.2:-15308984 MS.gene026676:CDS
AGCTAATTCAGGAGGTTCTA+TGG 0.328878 1.2:-15309522 MS.gene026676:CDS
TGATATTTCTTTGGTGCTAC+TGG 0.337052 1.2:+15309172 None:intergenic
GGTATGAAGTTGCCGGAAAA+TGG 0.337471 1.2:-15308215 MS.gene026676:CDS
TCTTTGACATTTGTGCTCAT+TGG 0.345552 1.2:+15308156 None:intergenic
CACAGCAGAGTAGTAATTAT+AGG 0.347958 1.2:+15308359 None:intergenic
GTACAAGATAATAGAGGAAA+TGG 0.348833 1.2:-15308097 MS.gene026676:CDS
TGCGGCTCGTTTGGCTTCAT+CGG 0.352118 1.2:-15308985 MS.gene026676:CDS
TTATAGGCTTCAACAAATCT+TGG 0.356310 1.2:+15308375 None:intergenic
CCGTCTAGTTCTGGGATATC+AGG 0.356405 1.2:-15309587 MS.gene026676:CDS
TTTGGATTTATTGCTGCTAA+TGG 0.383067 1.2:-15308864 MS.gene026676:CDS
TACATGCTTCTATGCTTATC+AGG 0.384672 1.2:+15309683 None:intergenic
TTTCAACATTTAACCTATCC+TGG 0.392817 1.2:+15308301 None:intergenic
CCTGATTGCTTTGAATTTGA+CGG 0.401860 1.2:-15309404 MS.gene026676:CDS
CCGTCAAATTCAAAGCAATC+AGG 0.405445 1.2:+15309404 None:intergenic
ATGGAGGGCAAGGATGAAAA+TGG 0.406129 1.2:-15308196 MS.gene026676:CDS
TTCAATTCAGGGAGAACCTT+CGG 0.411593 1.2:-15309039 MS.gene026676:CDS
CAAATGTCAAAGAAGCAATC+AGG 0.416319 1.2:-15308146 MS.gene026676:CDS
ACGATGAGGAAAACATGTTT+AGG 0.418481 1.2:-15309313 MS.gene026676:CDS
ACGAAACATAAGTTTCAAAC+TGG 0.420279 1.2:+15309489 None:intergenic
CTCACATAAGGTGGCTTCCC+TGG 0.421499 1.2:+15308735 None:intergenic
AACCTATCCTGGCTCTCTCT+TGG 0.422550 1.2:+15308312 None:intergenic
GGACGACAGTTGAGCATTGA+TGG 0.424496 1.2:+15308567 None:intergenic
AGGCAGTTGGTTTCAATTCA+GGG 0.425383 1.2:-15309050 MS.gene026676:CDS
ATAGAACGGTATGAAGTTGC+CGG 0.427124 1.2:-15308222 MS.gene026676:CDS
ATTCATAGAGTAATTGCTTC+GGG 0.428091 1.2:+15309132 None:intergenic
TACCAGCTCAGAGCTAATTC+AGG 0.431218 1.2:-15309533 MS.gene026676:CDS
TACAAGATAATAGAGGAAAT+GGG 0.441200 1.2:-15308096 MS.gene026676:CDS
TCAACAAATCTTGGGAGAAA+GGG 0.445090 1.2:+15308384 None:intergenic
GTTCACCACAAGAGCTTCCC+CGG 0.452377 1.2:+15308545 None:intergenic
TACCGTTGATACACTTTCAT+CGG 0.452419 1.2:+15308497 None:intergenic
ACCGTTGATACACTTTCATC+GGG 0.454201 1.2:+15308498 None:intergenic
GGGTTATATATTGACTTCCT+TGG 0.454975 1.2:+15308781 None:intergenic
TATAGGCTTCAACAAATCTT+GGG 0.456724 1.2:+15308376 None:intergenic
TTCAACAAATCTTGGGAGAA+AGG 0.466115 1.2:+15308383 None:intergenic
TATGTCATTGATTATATCTC+CGG 0.466200 1.2:-15309795 MS.gene026676:CDS
TCTGAGGACAAAGATTCCTT+TGG 0.467050 1.2:+15309212 None:intergenic
TGATAGAACCGTCTAGTTCT+GGG 0.467216 1.2:-15309595 MS.gene026676:CDS
GAGTTGGCTGATGCGTCGTA+TGG 0.473339 1.2:-15309773 MS.gene026676:CDS
TCAATGCTCAACTGTCGTCC+CGG 0.473427 1.2:-15308564 MS.gene026676:CDS
CAATGCTCAACTGTCGTCCC+GGG 0.477152 1.2:-15308563 MS.gene026676:CDS
CACTCTTCCAAGAGAGAGCC+AGG 0.479427 1.2:-15308319 MS.gene026676:CDS
CATTCATAGAGTAATTGCTT+CGG 0.479741 1.2:+15309131 None:intergenic
GCTTATCAGGAGCAAAATCA+TGG 0.483645 1.2:+15309696 None:intergenic
TCTTAACCATGCGGAGAAGC+TGG 0.488691 1.2:+15308463 None:intergenic
GTTGGAGGCCTAAGTATCAT+AGG 0.491231 1.2:-15308672 MS.gene026676:CDS
CAGCTATGATCGATGATCTC+AGG 0.491997 1.2:-15309070 MS.gene026676:CDS
GCCAAGCTATACTCGTTAAA+GGG 0.492765 1.2:-15309746 MS.gene026676:CDS
TGAAAATACAAGAATTGGAG+AGG 0.493157 1.2:-15309370 MS.gene026676:CDS
TCGTCCCGGGGAAGCTCTTG+TGG 0.495157 1.2:-15308550 MS.gene026676:CDS
GTCTTTGACCTATGATACTT+AGG 0.498050 1.2:+15308664 None:intergenic
CGACTTGTTCTGAATGGGAT+TGG 0.499359 1.2:+15309247 None:intergenic
AAATCATGGGAGGACAAGCC+AGG 0.501458 1.2:+15309710 None:intergenic
TTGGCACACTCAGCAAAGTC+AGG 0.501614 1.2:+15309266 None:intergenic
AAGCAATCAGGGAACTCATA+AGG 0.502002 1.2:-15308134 MS.gene026676:CDS
ATTGATTATATCTCCGGAGT+TGG 0.504145 1.2:-15309789 MS.gene026676:CDS
TGTCATTGCGTGTGAGGGCG+AGG 0.504713 1.2:-15308250 MS.gene026676:CDS
AAATGTTGAAAGGCAATGCT+TGG 0.507153 1.2:-15308289 MS.gene026676:CDS
CCACCTTATGTGAGATTGAC+CGG 0.507424 1.2:-15308726 MS.gene026676:CDS
CAAACACTTGCTTCTAGGCC+AGG 0.511442 1.2:-15308753 MS.gene026676:CDS
TCCCTTTAACGAGTATAGCT+TGG 0.513672 1.2:+15309745 None:intergenic
TGATGCGACTTGTTCTGAAT+GGG 0.520418 1.2:+15309242 None:intergenic
CATCGGGCATGTGATGAAGC+TGG 0.525795 1.2:+15308514 None:intergenic
GGATAGAATTGCAGCCTACA+TGG 0.528367 1.2:-15309018 MS.gene026676:CDS
ACACCGGTCAATCTCACATA+AGG 0.532296 1.2:+15308723 None:intergenic
AATTTCGTGCTGTAGCATCA+AGG 0.533903 1.2:-15308605 MS.gene026676:CDS
AAACTTATGTTTCGTCTACA+AGG 0.534213 1.2:-15309481 MS.gene026676:CDS
TTATAAAGCTTTGAAATGCA+AGG 0.539721 1.2:-15308952 MS.gene026676:CDS
GGCTATTAAAGATGATAAGA+AGG 0.541700 1.2:-15308829 MS.gene026676:CDS
AAATATCACAAAACTTTCCT+CGG 0.543588 1.2:-15309157 MS.gene026676:CDS
GCTACAGCACGAAATTCAAA+TGG 0.544112 1.2:+15308612 None:intergenic
ATGATGCGACTTGTTCTGAA+TGG 0.544379 1.2:+15309241 None:intergenic
GTTTAGGACTGTTCAGAGCA+TGG 0.548249 1.2:-15309297 MS.gene026676:CDS
TCCAAAACTTGTGACAGTTG+TGG 0.549059 1.2:-15308433 MS.gene026676:CDS
GAATCCGTGCAACGATCTGT+TGG 0.549569 1.2:-15308690 MS.gene026676:CDS
AGCAATGCAGATACTATTCG+AGG 0.550536 1.2:-15308904 MS.gene026676:CDS
TGACAAGTACAAGATAATAG+AGG 0.550853 1.2:-15308103 MS.gene026676:CDS
GTTCCTCTGTAGGTGAATCA+AGG 0.552374 1.2:+15309618 None:intergenic
AGGGCAAGGATGAAAATGGC+TGG 0.554676 1.2:-15308192 MS.gene026676:CDS
AGAAGCAAGTGTTTGTATCA+GGG 0.558440 1.2:+15308761 None:intergenic
AAGGGAGCCGATGTTACACC+TGG 0.562237 1.2:-15309728 MS.gene026676:CDS
CTCCTGAATTAGCTCTGAGC+TGG 0.562844 1.2:+15309531 None:intergenic
ACAAGATAATAGAGGAAATG+GGG 0.563828 1.2:-15308095 MS.gene026676:CDS
GATCGATGATCTCAGGCAGT+TGG 0.564311 1.2:-15309063 MS.gene026676:CDS
AGTTGGCTGATGCGTCGTAT+GGG 0.565392 1.2:-15309772 MS.gene026676:CDS
ACTTGATTGTTGCTTCAGCA+TGG 0.566287 1.2:-15308044 MS.gene026676:CDS
CTGGCTCTCTCTTGGAAGAG+TGG 0.569511 1.2:+15308320 None:intergenic
TTGCCGGAAAATGGAGGGCA+AGG 0.570168 1.2:-15308206 MS.gene026676:CDS
GAATTGGAGAGGGCACTGCT+TGG 0.573720 1.2:-15309359 MS.gene026676:CDS
TCCGTGCAACGATCTGTTGG+AGG 0.575063 1.2:-15308687 MS.gene026676:CDS
CAACAAATCTTGGGAGAAAG+GGG 0.584291 1.2:+15308385 None:intergenic
AGGATAGGTTAAATGTTGAA+AGG 0.585242 1.2:-15308299 MS.gene026676:CDS
GAAAAGCTAGCAGAAGTACT+CGG 0.588604 1.2:-15308639 MS.gene026676:CDS
ATGAAGTTGCCGGAAAATGG+AGG 0.588856 1.2:-15308212 MS.gene026676:CDS
AGTAATTGCTTCGGGGTCCG+AGG 0.588857 1.2:+15309140 None:intergenic
CGTCAAATTCAAAGCAATCA+GGG 0.590617 1.2:+15309405 None:intergenic
GTCAATGTCATTGCGTGTGA+GGG 0.592691 1.2:-15308255 MS.gene026676:CDS
AAATGTCAAAGAAGCAATCA+GGG 0.593878 1.2:-15308145 MS.gene026676:CDS
GGAAATTCTGTTCATGCTGA+TGG 0.594308 1.2:-15309566 MS.gene026676:CDS
GCCTCCAACAGATCGTTGCA+CGG 0.595803 1.2:+15308686 None:intergenic
GCCCGATGAAAGTGTATCAA+CGG 0.597244 1.2:-15308499 MS.gene026676:CDS
TAAATCCAAACTTAAAACAT+GGG 0.600368 1.2:+15308877 None:intergenic
ATAAATCCAAACTTAAAACA+TGG 0.605905 1.2:+15308876 None:intergenic
ACGAGACCAGCTTCTCCGCA+TGG 0.606476 1.2:-15308469 MS.gene026676:CDS
GGTTCTATCAGTTCCTCTGT+AGG 0.608223 1.2:+15309608 None:intergenic
TTGAAAGGCAATGCTTGGCG+AGG 0.610581 1.2:-15308284 MS.gene026676:CDS
CCTGATATCCCAGAACTAGA+CGG 0.611349 1.2:+15309587 None:intergenic
TGTGCTAGCGCACTTTCAGA+AGG 0.613130 1.2:-15309110 MS.gene026676:CDS
CTTCCTTGATTCACCTACAG+AGG 0.616392 1.2:-15309621 MS.gene026676:CDS
AAACACTTGCTTCTAGGCCA+GGG 0.617893 1.2:-15308752 MS.gene026676:CDS
GCTACTAAGATTTGAATCTG+AGG 0.622598 1.2:+15309196 None:intergenic
TAGGCTGCAATTCTATCCGA+AGG 0.623160 1.2:+15309023 None:intergenic
GTCGCATCATGACTCGCCAA+AGG 0.623457 1.2:-15309228 MS.gene026676:CDS
CCGGTCAATCTCACATAAGG+TGG 0.626350 1.2:+15308726 None:intergenic
ATTGCAGCCTACATGGTGGA+AGG 0.627921 1.2:-15309011 MS.gene026676:CDS
CAAGATAATAGAGGAAATGG+GGG 0.629220 1.2:-15308094 MS.gene026676:CDS
TGAAAGGCAATGCTTGGCGA+GGG 0.630756 1.2:-15308283 MS.gene026676:CDS
TACGACGCATCAGCCAACTC+CGG 0.632209 1.2:+15309776 None:intergenic
GAAAATACAAGAATTGGAGA+GGG 0.632436 1.2:-15309369 MS.gene026676:CDS
TGTCAATGTCATTGCGTGTG+AGG 0.632541 1.2:-15308256 MS.gene026676:CDS
TTCCAAGAGAGAGCCAGGAT+AGG 0.634206 1.2:-15308314 MS.gene026676:CDS
CTTATCAGGAGCAAAATCAT+GGG 0.634286 1.2:+15309697 None:intergenic
TGAAGTTGCCGGAAAATGGA+GGG 0.635160 1.2:-15308211 MS.gene026676:CDS
GCTGCTAGACGATCAGAAGA+CGG 0.639186 1.2:+15308924 None:intergenic
CTACATGGTGGAAGGACTTG+CGG 0.640770 1.2:-15309003 MS.gene026676:CDS
CGCAAGTCCTTCCACCATGT+AGG 0.643612 1.2:+15309004 None:intergenic
GGACAAGCCAGGTGTAACAT+CGG 0.651711 1.2:+15309721 None:intergenic
TTCACCACAAGAGCTTCCCC+GGG 0.654911 1.2:+15308546 None:intergenic
TGCTAATGGTGCTATCTCTG+AGG 0.658374 1.2:-15308850 MS.gene026676:CDS
AACAAATCTTGGGAGAAAGG+GGG 0.658411 1.2:+15308386 None:intergenic
ATCAGGAGCAAAATCATGGG+AGG 0.665372 1.2:+15309700 None:intergenic
CAGCTCAGAGCTAATTCAGG+AGG 0.666948 1.2:-15309530 MS.gene026676:CDS
TTCATAGAGTAATTGCTTCG+GGG 0.668763 1.2:+15309133 None:intergenic
AATGCTCAACTGTCGTCCCG+GGG 0.671564 1.2:-15308562 MS.gene026676:CDS
GATTAAGGCTCTTAACCATG+CGG 0.671983 1.2:+15308454 None:intergenic
CGGCTCGTTTGGCTTCATCG+GGG 0.673846 1.2:-15308983 MS.gene026676:CDS
TGATGAGTGTGATGACGATG+AGG 0.676899 1.2:-15309327 MS.gene026676:CDS
GAGATCATCGATCATAGCTG+AGG 0.677523 1.2:+15309073 None:intergenic
TAGAATTGCAGCCTACATGG+TGG 0.682524 1.2:-15309015 MS.gene026676:CDS
AGGGCGAGGATAGAATAGAA+CGG 0.705742 1.2:-15308236 MS.gene026676:CDS
AAGATAATAGAGGAAATGGG+GGG 0.732816 1.2:-15308093 MS.gene026676:CDS
GGATTCGGGATCATCAACAC+CGG 0.740769 1.2:+15308707 None:intergenic
GCTAGACGATCAGAAGACGG+AGG 0.750067 1.2:+15308927 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAATCCAAACTTAAAACA+TGG + chr1.2:15308959-15308978 None:intergenic 20.0%
!! TAAATCCAAACTTAAAACAT+GGG + chr1.2:15308958-15308977 None:intergenic 20.0%
!!! AAAGTTTTGTGATATTTCTT+TGG + chr1.2:15308672-15308691 None:intergenic 20.0%
! AAATATCACAAAACTTTCCT+CGG - chr1.2:15308675-15308694 MS.gene026676:CDS 25.0%
! CAAGAAATCTGATTCAAAAT+TGG + chr1.2:15308396-15308415 None:intergenic 25.0%
! TACAAGATAATAGAGGAAAT+GGG - chr1.2:15309736-15309755 MS.gene026676:CDS 25.0%
!! CAATTTTGAATCAGATTTCT+TGG - chr1.2:15308394-15308413 MS.gene026676:CDS 25.0%
!!! ATAGATTTTGATATCAACCA+AGG - chr1.2:15309034-15309053 MS.gene026676:CDS 25.0%
!!! TTATAAAGCTTTGAAATGCA+AGG - chr1.2:15308880-15308899 MS.gene026676:CDS 25.0%
AAACTTATGTTTCGTCTACA+AGG - chr1.2:15308351-15308370 MS.gene026676:CDS 30.0%
AAATGTCAAAGAAGCAATCA+GGG - chr1.2:15309687-15309706 MS.gene026676:CDS 30.0%
ACAAGATAATAGAGGAAATG+GGG - chr1.2:15309737-15309756 MS.gene026676:CDS 30.0%
ACGAAACATAAGTTTCAAAC+TGG + chr1.2:15308346-15308365 None:intergenic 30.0%
AGGATAGGTTAAATGTTGAA+AGG - chr1.2:15309533-15309552 MS.gene026676:CDS 30.0%
ATTCATAGAGTAATTGCTTC+GGG + chr1.2:15308703-15308722 None:intergenic 30.0%
CATTCATAGAGTAATTGCTT+CGG + chr1.2:15308704-15308723 None:intergenic 30.0%
GAAAATACAAGAATTGGAGA+GGG - chr1.2:15308463-15308482 MS.gene026676:CDS 30.0%
GCGATTGAAAATACAAGAAT+TGG - chr1.2:15308457-15308476 MS.gene026676:CDS 30.0%
GGCTATTAAAGATGATAAGA+AGG - chr1.2:15309003-15309022 MS.gene026676:CDS 30.0%
GTACAAGATAATAGAGGAAA+TGG - chr1.2:15309735-15309754 MS.gene026676:CDS 30.0%
TATAGGCTTCAACAAATCTT+GGG + chr1.2:15309459-15309478 None:intergenic 30.0%
TGAAAATACAAGAATTGGAG+AGG - chr1.2:15308462-15308481 MS.gene026676:CDS 30.0%
TGACAAGTACAAGATAATAG+AGG - chr1.2:15309729-15309748 MS.gene026676:CDS 30.0%
TTATAGGCTTCAACAAATCT+TGG + chr1.2:15309460-15309479 None:intergenic 30.0%
TTTCAACATTTAACCTATCC+TGG + chr1.2:15309534-15309553 None:intergenic 30.0%
TTTGGATTTATTGCTGCTAA+TGG - chr1.2:15308968-15308987 MS.gene026676:CDS 30.0%
AAATGTTGAAAGGCAATGCT+TGG - chr1.2:15309543-15309562 MS.gene026676:CDS 35.0%
AAGATAATAGAGGAAATGGG+GGG - chr1.2:15309739-15309758 MS.gene026676:CDS 35.0%
ACGATGAGGAAAACATGTTT+AGG - chr1.2:15308519-15308538 MS.gene026676:CDS 35.0%
AGAAGCAAGTGTTTGTATCA+GGG + chr1.2:15309074-15309093 None:intergenic 35.0%
ATTGATTATATCTCCGGAGT+TGG - chr1.2:15308043-15308062 MS.gene026676:CDS 35.0%
CAAATGTCAAAGAAGCAATC+AGG - chr1.2:15309686-15309705 MS.gene026676:CDS 35.0%
CAAGATAATAGAGGAAATGG+GGG - chr1.2:15309738-15309757 MS.gene026676:CDS 35.0%
CACAGCAGAGTAGTAATTAT+AGG + chr1.2:15309476-15309495 None:intergenic 35.0%
CGTCAAATTCAAAGCAATCA+GGG + chr1.2:15308430-15308449 None:intergenic 35.0%
CTTATCAGGAGCAAAATCAT+GGG + chr1.2:15308138-15308157 None:intergenic 35.0%
GCTACTAAGATTTGAATCTG+AGG + chr1.2:15308639-15308658 None:intergenic 35.0%
GTCTTTGACCTATGATACTT+AGG + chr1.2:15309171-15309190 None:intergenic 35.0%
TACATGCTTCTATGCTTATC+AGG + chr1.2:15308152-15308171 None:intergenic 35.0%
TACCGTTGATACACTTTCAT+CGG + chr1.2:15309338-15309357 None:intergenic 35.0%
TAGAAGCAAGTGTTTGTATC+AGG + chr1.2:15309075-15309094 None:intergenic 35.0%
TCAACAAATCTTGGGAGAAA+GGG + chr1.2:15309451-15309470 None:intergenic 35.0%
TCTTTGACATTTGTGCTCAT+TGG + chr1.2:15309679-15309698 None:intergenic 35.0%
TGATACAAACACTTGCTTCT+AGG - chr1.2:15309074-15309093 MS.gene026676:CDS 35.0%
TTCAACAAATCTTGGGAGAA+AGG + chr1.2:15309452-15309471 None:intergenic 35.0%
TTCATAGAGTAATTGCTTCG+GGG + chr1.2:15308702-15308721 None:intergenic 35.0%
! CCTGATTGCTTTGAATTTGA+CGG - chr1.2:15308428-15308447 MS.gene026676:CDS 35.0%
!! GGGTTATATATTGACTTCCT+TGG + chr1.2:15309054-15309073 None:intergenic 35.0%
!! TGATATTTCTTTGGTGCTAC+TGG + chr1.2:15308663-15308682 None:intergenic 35.0%
!!! CTGTCACAAGTTTTGGATTA+AGG + chr1.2:15309396-15309415 None:intergenic 35.0%
AACAAATCTTGGGAGAAAGG+GGG + chr1.2:15309449-15309468 None:intergenic 40.0%
AAGCAATCAGGGAACTCATA+AGG - chr1.2:15309698-15309717 MS.gene026676:CDS 40.0%
AATTTCGTGCTGTAGCATCA+AGG - chr1.2:15309227-15309246 MS.gene026676:CDS 40.0%
ACCGTTGATACACTTTCATC+GGG + chr1.2:15309337-15309356 None:intergenic 40.0%
AGCAATGCAGATACTATTCG+AGG - chr1.2:15308928-15308947 MS.gene026676:CDS 40.0%
AGCTAATTCAGGAGGTTCTA+TGG - chr1.2:15308310-15308329 MS.gene026676:CDS 40.0%
ATAGAACGGTATGAAGTTGC+CGG - chr1.2:15309610-15309629 MS.gene026676:CDS 40.0%
CAACAAATCTTGGGAGAAAG+GGG + chr1.2:15309450-15309469 None:intergenic 40.0%
CCGTCAAATTCAAAGCAATC+AGG + chr1.2:15308431-15308450 None:intergenic 40.0%
GATTAAGGCTCTTAACCATG+CGG + chr1.2:15309381-15309400 None:intergenic 40.0%
GCCAAGCTATACTCGTTAAA+GGG - chr1.2:15308086-15308105 MS.gene026676:CDS 40.0%
GCTACAGCACGAAATTCAAA+TGG + chr1.2:15309223-15309242 None:intergenic 40.0%
GCTTATCAGGAGCAAAATCA+TGG + chr1.2:15308139-15308158 None:intergenic 40.0%
GGAAATTCTGTTCATGCTGA+TGG - chr1.2:15308266-15308285 MS.gene026676:CDS 40.0%
TCCAAAACTTGTGACAGTTG+TGG - chr1.2:15309399-15309418 MS.gene026676:CDS 40.0%
TCCCTTTAACGAGTATAGCT+TGG + chr1.2:15308090-15308109 None:intergenic 40.0%
TCTGAGGACAAAGATTCCTT+TGG + chr1.2:15308623-15308642 None:intergenic 40.0%
TGCCAAGCTATACTCGTTAA+AGG - chr1.2:15308085-15308104 MS.gene026676:CDS 40.0%
TTCAATTCAGGGAGAACCTT+CGG - chr1.2:15308793-15308812 MS.gene026676:CDS 40.0%
! AAATGGGGGGACTTCATTTT+GGG - chr1.2:15309752-15309771 MS.gene026676:CDS 40.0%
! ACTTGATTGTTGCTTCAGCA+TGG - chr1.2:15309788-15309807 MS.gene026676:CDS 40.0%
! AGGCAGTTGGTTTCAATTCA+GGG - chr1.2:15308782-15308801 MS.gene026676:CDS 40.0%
! ATGATGCGACTTGTTCTGAA+TGG + chr1.2:15308594-15308613 None:intergenic 40.0%
! TCCACAACTGTCACAAGTTT+TGG + chr1.2:15309403-15309422 None:intergenic 40.0%
! TGATGCGACTTGTTCTGAAT+GGG + chr1.2:15308593-15308612 None:intergenic 40.0%
!! GAAAAGCTAGCAGAAGTACT+CGG - chr1.2:15309193-15309212 MS.gene026676:CDS 40.0%
!! TGATAGAACCGTCTAGTTCT+GGG - chr1.2:15308237-15308256 MS.gene026676:CDS 40.0%
!!! GTGTGCCCATGTTTTAAGTT+TGG - chr1.2:15308950-15308969 MS.gene026676:CDS 40.0%
AAACACTTGCTTCTAGGCCA+GGG - chr1.2:15309080-15309099 MS.gene026676:CDS 45.0%
AACAGATCGTTGCACGGATT+CGG + chr1.2:15309143-15309162 None:intergenic 45.0%
ACACCGGTCAATCTCACATA+AGG + chr1.2:15309112-15309131 None:intergenic 45.0%
AGGGCGAGGATAGAATAGAA+CGG - chr1.2:15309596-15309615 MS.gene026676:CDS 45.0%
ATCAGGAGCAAAATCATGGG+AGG + chr1.2:15308135-15308154 None:intergenic 45.0%
ATGAAGTTGCCGGAAAATGG+AGG - chr1.2:15309620-15309639 MS.gene026676:CDS 45.0%
ATGGAGGGCAAGGATGAAAA+TGG - chr1.2:15309636-15309655 MS.gene026676:CDS 45.0%
CAGCTATGATCGATGATCTC+AGG - chr1.2:15308762-15308781 MS.gene026676:CDS 45.0%
CCACCTTATGTGAGATTGAC+CGG - chr1.2:15309106-15309125 MS.gene026676:CDS 45.0%
CCTGATATCCCAGAACTAGA+CGG + chr1.2:15308248-15308267 None:intergenic 45.0%
CTTCCTTGATTCACCTACAG+AGG - chr1.2:15308211-15308230 MS.gene026676:CDS 45.0%
GAGATCATCGATCATAGCTG+AGG + chr1.2:15308762-15308781 None:intergenic 45.0%
GGATAGAATTGCAGCCTACA+TGG - chr1.2:15308814-15308833 MS.gene026676:CDS 45.0%
GGTATGAAGTTGCCGGAAAA+TGG - chr1.2:15309617-15309636 MS.gene026676:CDS 45.0%
GGTTCTATCAGTTCCTCTGT+AGG + chr1.2:15308227-15308246 None:intergenic 45.0%
GTCAATGTCATTGCGTGTGA+GGG - chr1.2:15309577-15309596 MS.gene026676:CDS 45.0%
GTTCCTCTGTAGGTGAATCA+AGG + chr1.2:15308217-15308236 None:intergenic 45.0%
GTTGGAGGCCTAAGTATCAT+AGG - chr1.2:15309160-15309179 MS.gene026676:CDS 45.0%
TACCAGCTCAGAGCTAATTC+AGG - chr1.2:15308299-15308318 MS.gene026676:CDS 45.0%
TAGAATTGCAGCCTACATGG+TGG - chr1.2:15308817-15308836 MS.gene026676:CDS 45.0%
TAGGCTGCAATTCTATCCGA+AGG + chr1.2:15308812-15308831 None:intergenic 45.0%
TGAAGTTGCCGGAAAATGGA+GGG - chr1.2:15309621-15309640 MS.gene026676:CDS 45.0%
TGTCAATGTCATTGCGTGTG+AGG - chr1.2:15309576-15309595 MS.gene026676:CDS 45.0%
! CAGGCAGTTGGTTTCAATTC+AGG - chr1.2:15308781-15308800 MS.gene026676:CDS 45.0%
! CGACTTGTTCTGAATGGGAT+TGG + chr1.2:15308588-15308607 None:intergenic 45.0%
! CTGATAGAACCGTCTAGTTC+TGG - chr1.2:15308236-15308255 MS.gene026676:CDS 45.0%
! GAAATGGGGGGACTTCATTT+TGG - chr1.2:15309751-15309770 MS.gene026676:CDS 45.0%
! GCCCGATGAAAGTGTATCAA+CGG - chr1.2:15309333-15309352 MS.gene026676:CDS 45.0%
! GTTTAGGACTGTTCAGAGCA+TGG - chr1.2:15308535-15308554 MS.gene026676:CDS 45.0%
! TGATGAGTGTGATGACGATG+AGG - chr1.2:15308505-15308524 MS.gene026676:CDS 45.0%
!! TGCTAATGGTGCTATCTCTG+AGG - chr1.2:15308982-15309001 MS.gene026676:CDS 45.0%
AAATCATGGGAGGACAAGCC+AGG + chr1.2:15308125-15308144 None:intergenic 50.0%
ACAGATCGTTGCACGGATTC+GGG + chr1.2:15309142-15309161 None:intergenic 50.0%
AGGGCAAGGATGAAAATGGC+TGG - chr1.2:15309640-15309659 MS.gene026676:CDS 50.0%
AGTTGGCTGATGCGTCGTAT+GGG - chr1.2:15308060-15308079 MS.gene026676:CDS 50.0%
CAAACACTTGCTTCTAGGCC+AGG - chr1.2:15309079-15309098 MS.gene026676:CDS 50.0%
CAGCTCAGAGCTAATTCAGG+AGG - chr1.2:15308302-15308321 MS.gene026676:CDS 50.0%
CCGGTCAATCTCACATAAGG+TGG + chr1.2:15309109-15309128 None:intergenic 50.0%
GAATCCGTGCAACGATCTGT+TGG - chr1.2:15309142-15309161 MS.gene026676:CDS 50.0%
GATCGATGATCTCAGGCAGT+TGG - chr1.2:15308769-15308788 MS.gene026676:CDS 50.0%
GCTGCTAGACGATCAGAAGA+CGG + chr1.2:15308911-15308930 None:intergenic 50.0%
GGACAAGCCAGGTGTAACAT+CGG + chr1.2:15308114-15308133 None:intergenic 50.0%
GGATTCGGGATCATCAACAC+CGG + chr1.2:15309128-15309147 None:intergenic 50.0%
TCAATGCTCAACTGTCGTCC+CGG - chr1.2:15309268-15309287 MS.gene026676:CDS 50.0%
TCTTAACCATGCGGAGAAGC+TGG + chr1.2:15309372-15309391 None:intergenic 50.0%
TGAAAGGCAATGCTTGGCGA+GGG - chr1.2:15309549-15309568 MS.gene026676:CDS 50.0%
TGTGCTAGCGCACTTTCAGA+AGG - chr1.2:15308722-15308741 MS.gene026676:CDS 50.0%
TTCCAAGAGAGAGCCAGGAT+AGG - chr1.2:15309518-15309537 MS.gene026676:CDS 50.0%
TTGAAAGGCAATGCTTGGCG+AGG - chr1.2:15309548-15309567 MS.gene026676:CDS 50.0%
TTGGCACACTCAGCAAAGTC+AGG + chr1.2:15308569-15308588 None:intergenic 50.0%
! AACCTATCCTGGCTCTCTCT+TGG + chr1.2:15309523-15309542 None:intergenic 50.0%
! ATTGCAGCCTACATGGTGGA+AGG - chr1.2:15308821-15308840 MS.gene026676:CDS 50.0%
! CATCCTTGCCCTCCATTTTC+CGG + chr1.2:15309632-15309651 None:intergenic 50.0%
! CTACATGGTGGAAGGACTTG+CGG - chr1.2:15308829-15308848 MS.gene026676:CDS 50.0%
!! CCGTCTAGTTCTGGGATATC+AGG - chr1.2:15308245-15308264 MS.gene026676:CDS 50.0%
!! CTCCTGAATTAGCTCTGAGC+TGG + chr1.2:15308304-15308323 None:intergenic 50.0%
!! GGACGACAGTTGAGCATTGA+TGG + chr1.2:15309268-15309287 None:intergenic 50.0%
AAGGGAGCCGATGTTACACC+TGG - chr1.2:15308104-15308123 MS.gene026676:CDS 55.0%
AATGCTCAACTGTCGTCCCG+GGG - chr1.2:15309270-15309289 MS.gene026676:CDS 55.0%
AGTAATTGCTTCGGGGTCCG+AGG + chr1.2:15308695-15308714 None:intergenic 55.0%
CAATGCTCAACTGTCGTCCC+GGG - chr1.2:15309269-15309288 MS.gene026676:CDS 55.0%
CACTCTTCCAAGAGAGAGCC+AGG - chr1.2:15309513-15309532 MS.gene026676:CDS 55.0%
CATCGGGCATGTGATGAAGC+TGG + chr1.2:15309321-15309340 None:intergenic 55.0%
CGCAAGTCCTTCCACCATGT+AGG + chr1.2:15308831-15308850 None:intergenic 55.0%
CTCACATAAGGTGGCTTCCC+TGG + chr1.2:15309100-15309119 None:intergenic 55.0%
GAGTTGGCTGATGCGTCGTA+TGG - chr1.2:15308059-15308078 MS.gene026676:CDS 55.0%
GCCTCCAACAGATCGTTGCA+CGG + chr1.2:15309149-15309168 None:intergenic 55.0%
GCTAGACGATCAGAAGACGG+AGG + chr1.2:15308908-15308927 None:intergenic 55.0%
GTCGCATCATGACTCGCCAA+AGG - chr1.2:15308604-15308623 MS.gene026676:CDS 55.0%
GTTCACCACAAGAGCTTCCC+CGG + chr1.2:15309290-15309309 None:intergenic 55.0%
TACGACGCATCAGCCAACTC+CGG + chr1.2:15308059-15308078 None:intergenic 55.0%
TCCGTGCAACGATCTGTTGG+AGG - chr1.2:15309145-15309164 MS.gene026676:CDS 55.0%
TTCACCACAAGAGCTTCCCC+GGG + chr1.2:15309289-15309308 None:intergenic 55.0%
TTGCCGGAAAATGGAGGGCA+AGG - chr1.2:15309626-15309645 MS.gene026676:CDS 55.0%
! CTGGCTCTCTCTTGGAAGAG+TGG + chr1.2:15309515-15309534 None:intergenic 55.0%
! TGCGGCTCGTTTGGCTTCAT+CGG - chr1.2:15308847-15308866 MS.gene026676:CDS 55.0%
! TGGGAGAAAGGGGGAAGTGT+TGG + chr1.2:15309440-15309459 None:intergenic 55.0%
! TGGGGGGACTTCATTTTGGG+TGG - chr1.2:15309755-15309774 MS.gene026676:CDS 55.0%
!! GAATTGGAGAGGGCACTGCT+TGG - chr1.2:15308473-15308492 MS.gene026676:CDS 55.0%
!! GGGGGGACTTCATTTTGGGT+GGG - chr1.2:15309756-15309775 MS.gene026676:CDS 55.0%
ACGAGACCAGCTTCTCCGCA+TGG - chr1.2:15309363-15309382 MS.gene026676:CDS 60.0%
GGAAGGACTTGCGGCTCGTT+TGG - chr1.2:15308838-15308857 MS.gene026676:CDS 60.0%
TGTCATTGCGTGTGAGGGCG+AGG - chr1.2:15309582-15309601 MS.gene026676:CDS 60.0%
! CGGCTCGTTTGGCTTCATCG+GGG - chr1.2:15308849-15308868 MS.gene026676:CDS 60.0%
! GCGGCTCGTTTGGCTTCATC+GGG - chr1.2:15308848-15308867 MS.gene026676:CDS 60.0%
TCGTCCCGGGGAAGCTCTTG+TGG - chr1.2:15309282-15309301 MS.gene026676:CDS 65.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 15308038 15309816 15308038 ID=MS.gene026676
chr1.2 mRNA 15308038 15309816 15308038 ID=MS.gene026676.t1;Parent=MS.gene026676
chr1.2 exon 15308038 15309816 15308038 ID=MS.gene026676.t1.exon1;Parent=MS.gene026676.t1
chr1.2 CDS 15308038 15309816 15308038 ID=cds.MS.gene026676.t1;Parent=MS.gene026676.t1
Gene Sequence

>MS.gene026676

ATGTCATTGATTATATCTCCGGAGTTGGCTGATGCGTCGTATGGGAATGCCAAGCTATACTCGTTAAAGGGAGCCGATGTTACACCTGGCTTGTCCTCCCATGATTTTGCTCCTGATAAGCATAGAAGCATGTACATGAATAATTCTTACTCGAGTGAGAGTTACGAAAAGTACTTCCTTGATTCACCTACAGAGGAACTGATAGAACCGTCTAGTTCTGGGATATCAGGAAATTCTGTTCATGCTGATGGTGATTCTTCGTACCAGCTCAGAGCTAATTCAGGAGGTTCTATGGTTACTGATAACCAGTTTGAAACTTATGTTTCGTCTACAAGGCAGCGTGATGCATATCAGTCCAATTTTGAATCAGATTTCTTGGAAAGTGAAAGCCCTGATTGCTTTGAATTTGACGGTGATATGCGATTGAAAATACAAGAATTGGAGAGGGCACTGCTTGGTGACAATAATGATGAGTGTGATGACGATGAGGAAAACATGTTTAGGACTGTTCAGAGCATGGAGATTGATCCTGACTTTGCTGAGTGTGCCAATCCCATTCAGAACAAGTCGCATCATGACTCGCCAAAGGAATCTTTGTCCTCAGATTCAAATCTTAGTAGCACCAGTAGCACCAAAGAAATATCACAAAACTTTCCTCGGACCCCGAAGCAATTACTCTATGAATGTGCTAGCGCACTTTCAGAAGGAAATGAAGTAAAAGCCTCAGCTATGATCGATGATCTCAGGCAGTTGGTTTCAATTCAGGGAGAACCTTCGGATAGAATTGCAGCCTACATGGTGGAAGGACTTGCGGCTCGTTTGGCTTCATCGGGGAAATGTATTTATAAAGCTTTGAAATGCAAGGAACCTCCGTCTTCTGATCGTCTAGCAGCAATGCAGATACTATTCGAGGTGTGCCCATGTTTTAAGTTTGGATTTATTGCTGCTAATGGTGCTATCTCTGAGGCTATTAAAGATGATAAGAAGGTTCACATTATAGATTTTGATATCAACCAAGGAAGTCAATATATAACCCTGATACAAACACTTGCTTCTAGGCCAGGGAAGCCACCTTATGTGAGATTGACCGGTGTTGATGATCCCGAATCCGTGCAACGATCTGTTGGAGGCCTAAGTATCATAGGTCAAAGACTTGAAAAGCTAGCAGAAGTACTCGGATTGCCATTTGAATTTCGTGCTGTAGCATCAAGGTCTTCAATTGTTACTCCATCAATGCTCAACTGTCGTCCCGGGGAAGCTCTTGTGGTGAACTTTGCATTCCAGCTTCATCACATGCCCGATGAAAGTGTATCAACGGTAAACGAACGAGACCAGCTTCTCCGCATGGTTAAGAGCCTTAATCCAAAACTTGTGACAGTTGTGGAACAAGATGTGAACACCAACACTTCCCCCTTTCTCCCAAGATTTGTTGAAGCCTATAATTACTACTCTGCTGTGTATGAGTCACTCGACGCCACTCTTCCAAGAGAGAGCCAGGATAGGTTAAATGTTGAAAGGCAATGCTTGGCGAGGGACATTGTCAATGTCATTGCGTGTGAGGGCGAGGATAGAATAGAACGGTATGAAGTTGCCGGAAAATGGAGGGCAAGGATGAAAATGGCTGGATTCACTTCATCACCAATGAGCACAAATGTCAAAGAAGCAATCAGGGAACTCATAAGGCAGTACTGTGACAAGTACAAGATAATAGAGGAAATGGGGGGACTTCATTTTGGGTGGGAAGACAAAAACTTGATTGTTGCTTCAGCATGGAAGTGA
Protein sequence

>MS.gene026676.t1

MSLIISPELADASYGNAKLYSLKGADVTPGLSSHDFAPDKHRSMYMNNSYSSESYEKYFLDSPTEELIEPSSSGISGNSVHADGDSSYQLRANSGGSMVTDNQFETYVSSTRQRDAYQSNFESDFLESESPDCFEFDGDMRLKIQELERALLGDNNDECDDDEENMFRTVQSMEIDPDFAECANPIQNKSHHDSPKESLSSDSNLSSTSSTKEISQNFPRTPKQLLYECASALSEGNEVKASAMIDDLRQLVSIQGEPSDRIAAYMVEGLAARLASSGKCIYKALKCKEPPSSDRLAAMQILFEVCPCFKFGFIAANGAISEAIKDDKKVHIIDFDINQGSQYITLIQTLASRPGKPPYVRLTGVDDPESVQRSVGGLSIIGQRLEKLAEVLGLPFEFRAVASRSSIVTPSMLNCRPGEALVVNFAFQLHHMPDESVSTVNERDQLLRMVKSLNPKLVTVVEQDVNTNTSPFLPRFVEAYNYYSAVYESLDATLPRESQDRLNVERQCLARDIVNVIACEGEDRIERYEVAGKWRARMKMAGFTSSPMSTNVKEAIRELIRQYCDKYKIIEEMGGLHFGWEDKNLIVASAWK