Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene026692.t1 | AFK49669.1 | 85.2 | 88 | 12 | 1 | 41 | 128 | 1 | 87 | 7.90E-30 | 140.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene026692.t1 | Q9FGJ3 | 40.0 | 100 | 60 | 0 | 33 | 132 | 17 | 116 | 6.8e-14 | 78.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene026692.t1 | I3TAX7 | 85.2 | 88 | 12 | 1 | 41 | 128 | 1 | 87 | 5.7e-30 | 140.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene026692.t1 | TF | NF-YB |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene026692.t1 | MTR_1g029100 | 82.418 | 91 | 15 | 1 | 41 | 131 | 1 | 90 | 2.09e-48 | 151 |
MS.gene026692.t1 | MTR_1g029070 | 43.262 | 141 | 69 | 3 | 1 | 131 | 1 | 140 | 1.11e-27 | 101 |
MS.gene026692.t1 | MTR_1g072790 | 39.286 | 112 | 58 | 1 | 37 | 138 | 23 | 134 | 2.17e-22 | 87.8 |
MS.gene026692.t1 | MTR_4g133952 | 38.211 | 123 | 66 | 3 | 16 | 132 | 29 | 147 | 1.11e-21 | 87.4 |
MS.gene026692.t1 | MTR_1g088860 | 34.677 | 124 | 80 | 1 | 9 | 132 | 3 | 125 | 1.41e-21 | 86.3 |
MS.gene026692.t1 | MTR_3g058980 | 38.462 | 104 | 63 | 1 | 43 | 146 | 27 | 129 | 3.38e-21 | 85.1 |
MS.gene026692.t1 | MTR_7g061270 | 36.607 | 112 | 68 | 1 | 43 | 151 | 26 | 137 | 6.94e-21 | 84.0 |
MS.gene026692.t1 | MTR_7g100650 | 36.607 | 112 | 68 | 1 | 43 | 151 | 26 | 137 | 9.53e-21 | 83.6 |
MS.gene026692.t1 | MTR_8g091720 | 38.679 | 106 | 64 | 1 | 43 | 148 | 28 | 132 | 1.89e-20 | 83.6 |
MS.gene026692.t1 | MTR_1g039040 | 39.216 | 102 | 61 | 1 | 39 | 140 | 2 | 102 | 2.07e-20 | 83.2 |
MS.gene026692.t1 | MTR_4g119500 | 32.520 | 123 | 83 | 0 | 25 | 147 | 4 | 126 | 3.28e-20 | 80.9 |
MS.gene026692.t1 | MTR_2g026710 | 40.426 | 94 | 55 | 1 | 43 | 136 | 17 | 109 | 4.23e-20 | 81.6 |
MS.gene026692.t1 | MTR_5g095740 | 41.111 | 90 | 53 | 0 | 43 | 132 | 23 | 112 | 5.39e-20 | 82.0 |
MS.gene026692.t1 | MTR_4g133938 | 40.698 | 86 | 51 | 0 | 46 | 131 | 22 | 107 | 5.52e-20 | 80.5 |
MS.gene026692.t1 | MTR_0392s0020 | 33.010 | 103 | 69 | 0 | 30 | 132 | 5 | 107 | 2.02e-19 | 79.3 |
MS.gene026692.t1 | MTR_8g093920 | 40.449 | 89 | 53 | 0 | 43 | 131 | 40 | 128 | 1.25e-18 | 79.0 |
MS.gene026692.t1 | MTR_1g083070 | 35.294 | 85 | 55 | 0 | 48 | 132 | 9 | 93 | 5.45e-18 | 75.1 |
MS.gene026692.t1 | MTR_1g028480 | 38.372 | 86 | 39 | 1 | 79 | 150 | 25 | 110 | 1.88e-14 | 65.5 |
MS.gene026692.t1 | MTR_5g095900 | 33.673 | 98 | 64 | 1 | 35 | 131 | 7 | 104 | 3.13e-14 | 66.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene026692.t1 | AT2G38880 | 37.795 | 127 | 75 | 2 | 22 | 147 | 3 | 126 | 6.44e-23 | 88.2 |
MS.gene026692.t1 | AT2G38880 | 37.209 | 129 | 75 | 2 | 22 | 147 | 3 | 128 | 1.25e-22 | 87.4 |
MS.gene026692.t1 | AT2G38880 | 37.209 | 129 | 75 | 2 | 22 | 147 | 3 | 128 | 1.35e-22 | 87.4 |
MS.gene026692.t1 | AT2G38880 | 37.209 | 129 | 75 | 2 | 22 | 147 | 3 | 128 | 1.35e-22 | 87.4 |
MS.gene026692.t1 | AT2G38880 | 37.209 | 129 | 75 | 2 | 22 | 147 | 3 | 128 | 1.35e-22 | 87.4 |
MS.gene026692.t1 | AT3G53340 | 40.541 | 111 | 63 | 1 | 43 | 150 | 29 | 139 | 2.45e-22 | 87.8 |
MS.gene026692.t1 | AT3G53340 | 40.541 | 111 | 63 | 1 | 43 | 150 | 29 | 139 | 2.45e-22 | 87.8 |
MS.gene026692.t1 | AT2G37060 | 39.640 | 111 | 64 | 1 | 43 | 150 | 30 | 140 | 5.80e-22 | 86.7 |
MS.gene026692.t1 | AT2G37060 | 39.640 | 111 | 64 | 1 | 43 | 150 | 30 | 140 | 5.80e-22 | 86.7 |
MS.gene026692.t1 | AT2G37060 | 39.640 | 111 | 64 | 1 | 43 | 150 | 30 | 140 | 5.80e-22 | 86.7 |
MS.gene026692.t1 | AT2G38880 | 37.838 | 111 | 66 | 1 | 22 | 132 | 3 | 110 | 4.86e-21 | 82.8 |
MS.gene026692.t1 | AT4G14540 | 41.111 | 90 | 53 | 0 | 43 | 132 | 21 | 110 | 6.73e-21 | 83.6 |
MS.gene026692.t1 | AT2G47810 | 35.593 | 118 | 74 | 1 | 16 | 131 | 22 | 139 | 1.21e-20 | 83.2 |
MS.gene026692.t1 | AT2G38880 | 37.838 | 111 | 66 | 1 | 22 | 132 | 3 | 110 | 1.76e-20 | 82.8 |
MS.gene026692.t1 | AT2G38880 | 37.838 | 111 | 66 | 1 | 22 | 132 | 3 | 110 | 1.76e-20 | 82.8 |
MS.gene026692.t1 | AT5G47640 | 42.222 | 90 | 52 | 0 | 43 | 132 | 27 | 116 | 2.46e-20 | 82.8 |
MS.gene026692.t1 | AT2G38880 | 37.838 | 111 | 66 | 1 | 22 | 132 | 3 | 110 | 5.46e-20 | 81.3 |
MS.gene026692.t1 | AT2G38880 | 37.838 | 111 | 66 | 1 | 22 | 132 | 3 | 110 | 5.46e-20 | 81.3 |
MS.gene026692.t1 | AT2G38880 | 37.838 | 111 | 66 | 1 | 22 | 132 | 3 | 110 | 5.46e-20 | 81.3 |
MS.gene026692.t1 | AT1G21970 | 32.886 | 149 | 82 | 2 | 1 | 132 | 1 | 148 | 5.71e-20 | 83.2 |
MS.gene026692.t1 | AT3G53340 | 42.222 | 90 | 52 | 0 | 43 | 132 | 29 | 118 | 1.79e-19 | 79.0 |
MS.gene026692.t1 | AT5G47670 | 36.000 | 100 | 64 | 0 | 43 | 142 | 29 | 128 | 2.46e-19 | 80.9 |
MS.gene026692.t1 | AT5G47670 | 36.000 | 100 | 64 | 0 | 43 | 142 | 58 | 157 | 5.32e-19 | 80.5 |
MS.gene026692.t1 | AT5G47670 | 36.000 | 100 | 64 | 0 | 43 | 142 | 58 | 157 | 5.32e-19 | 80.5 |
MS.gene026692.t1 | AT3G53340 | 42.222 | 90 | 52 | 0 | 43 | 132 | 29 | 118 | 3.79e-18 | 76.3 |
MS.gene026692.t1 | AT3G53340 | 42.222 | 90 | 52 | 0 | 43 | 132 | 29 | 118 | 3.79e-18 | 76.3 |
MS.gene026692.t1 | AT2G13570 | 40.449 | 89 | 53 | 0 | 43 | 131 | 36 | 124 | 1.03e-17 | 76.6 |
MS.gene026692.t1 | AT1G09030 | 31.522 | 92 | 63 | 0 | 41 | 132 | 1 | 92 | 7.97e-17 | 72.4 |
Find 39 sgRNAs with CRISPR-Local
Find 84 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GAGGAGTCTGTTCGGTCTCT+TGG | 0.335035 | 1.2:+15101272 | MS.gene026692:CDS |
TTTCCGCTGATGATTTACTA+TGG | 0.336830 | 1.2:+15101228 | MS.gene026692:CDS |
ATTTACTATGGACGATGAAT+AGG | 0.363355 | 1.2:+15101240 | MS.gene026692:CDS |
GATGCTCTACATTGGCTTGT+TGG | 0.407680 | 1.2:-15101196 | None:intergenic |
AGGAGTCTGTTCGGTCTCTT+GGG | 0.412177 | 1.2:+15101273 | MS.gene026692:CDS |
GATGAATAGGTTGGGCTTTG+AGG | 0.427694 | 1.2:+15101253 | MS.gene026692:CDS |
GTTGTTGGTGGTGTTTCTTT+CGG | 0.449562 | 1.2:-15100979 | None:intergenic |
CTATGGACGATGAATAGGTT+GGG | 0.452990 | 1.2:+15101245 | MS.gene026692:CDS |
ACCAACAACAACACTGGCAT+TGG | 0.458777 | 1.2:+15100993 | MS.gene026692:CDS |
TCCAATGCCAGTGTTGTTGT+TGG | 0.470529 | 1.2:-15100994 | None:intergenic |
TCAACGTTGGTCATCATCAT+TGG | 0.472149 | 1.2:-15101357 | None:intergenic |
CGCAAGAACATGGATGGGTC+AGG | 0.479316 | 1.2:+15101314 | MS.gene026692:CDS |
GACTCTTGGCACGTGACTGA+TGG | 0.483317 | 1.2:-15101069 | None:intergenic |
AATGCCAGTGTTGTTGTTGG+TGG | 0.486016 | 1.2:-15100991 | None:intergenic |
GAACGGTTGTTGTTAGATGA+AGG | 0.489970 | 1.2:-15099933 | None:intergenic |
TGGGCTTTGAGGAGTCTGTT+CGG | 0.494552 | 1.2:+15101264 | MS.gene026692:CDS |
CAACATTCAACTTCAGCAAT+GGG | 0.495332 | 1.2:+15101026 | MS.gene026692:CDS |
AGAACATTCTGCATGACTCT+TGG | 0.495807 | 1.2:-15101083 | None:intergenic |
AACTATCGCAAGAACATGGA+TGG | 0.501574 | 1.2:+15101308 | MS.gene026692:CDS |
CGTTCGGCACACTCAAGCTC+TGG | 0.525104 | 1.2:+15099951 | MS.gene026692:CDS |
TTCATCTAACAACAACCGTT+CGG | 0.526767 | 1.2:+15099935 | MS.gene026692:CDS |
TCATCAGTGATTATTGTGTC+TGG | 0.528332 | 1.2:-15101110 | None:intergenic |
ACTATGGACGATGAATAGGT+TGG | 0.532041 | 1.2:+15101244 | MS.gene026692:CDS |
CCATTGCTGAAGTTGAATGT+TGG | 0.536564 | 1.2:-15101025 | None:intergenic |
ACTCTTGGCACGTGACTGAT+GGG | 0.544229 | 1.2:-15101068 | None:intergenic |
ATTCTCTTGATGCTCTACAT+TGG | 0.555958 | 1.2:-15101204 | None:intergenic |
AATAATCACTGATGATGCTA+AGG | 0.558102 | 1.2:+15101118 | MS.gene026692:CDS |
TTCAACTTCAGCAATGGGCG+AGG | 0.564498 | 1.2:+15101031 | MS.gene026692:CDS |
CCAACATTCAACTTCAGCAA+TGG | 0.571857 | 1.2:+15101025 | MS.gene026692:CDS |
TGTGTCTAAATTTATGAACA+AGG | 0.573477 | 1.2:+15101157 | MS.gene026692:CDS |
ATGGATGGGTCAGGTGCTAG+TGG | 0.576300 | 1.2:+15101323 | MS.gene026692:CDS |
CGTTAATTTCATATCAACGT+TGG | 0.576753 | 1.2:-15101370 | None:intergenic |
AACACCACCAACAACAACAC+TGG | 0.611171 | 1.2:+15100987 | MS.gene026692:CDS |
TATGAACAAGGTCACAAGTG+AGG | 0.614031 | 1.2:+15101169 | MS.gene026692:CDS |
TCAGTGATTATTGTGTCTGG+TGG | 0.634070 | 1.2:-15101107 | None:intergenic |
ACTATCGCAAGAACATGGAT+GGG | 0.635414 | 1.2:+15101309 | MS.gene026692:CDS |
CGTCCATAGTAAATCATCAG+CGG | 0.656317 | 1.2:-15101231 | None:intergenic |
CAGAGCTTGAGTGTGCCGAA+CGG | 0.666284 | 1.2:-15099950 | None:intergenic |
TTACAAAGCAGTATGGAGCG+TGG | 0.683718 | 1.2:+15099906 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATAAATAAATTAATTAATTA+AGG | + | chr1.2:15100538-15100557 | MS.gene026692:intron | 0.0% |
!! | TAATTAATATTATATCCCAT+TGG | - | chr1.2:15100513-15100532 | None:intergenic | 15.0% |
!!! | ATTATTGTATTTAAAACCAA+TGG | + | chr1.2:15100494-15100513 | MS.gene026692:intron | 15.0% |
!!! | TTATTGTATTTAAAACCAAT+GGG | + | chr1.2:15100495-15100514 | MS.gene026692:intron | 15.0% |
!! | AAATTAAGTAAAAGAGATAG+AGG | - | chr1.2:15100286-15100305 | None:intergenic | 20.0% |
!! | AAGAAATAAAATGAGAGAAA+AGG | + | chr1.2:15100588-15100607 | MS.gene026692:intron | 20.0% |
!! | AATCTAATAGAAGCAATTAA+GGG | - | chr1.2:15100113-15100132 | None:intergenic | 20.0% |
!! | AATTCGATTCACATTAAAAA+AGG | + | chr1.2:15100375-15100394 | MS.gene026692:intron | 20.0% |
!! | TGATAGATCAATAATGAAAT+TGG | - | chr1.2:15100662-15100681 | None:intergenic | 20.0% |
!!! | ATCTTGGAATTAATTTTGTT+AGG | + | chr1.2:15100404-15100423 | MS.gene026692:intron | 20.0% |
!!! | ATGTTTTTAATAGAGGTAAA+AGG | - | chr1.2:15100954-15100973 | None:intergenic | 20.0% |
!!! | CACTTAACCATTTTTTATAT+GGG | + | chr1.2:15100190-15100209 | MS.gene026692:intron | 20.0% |
!!! | GTATTTTCCCATATAAAAAA+TGG | - | chr1.2:15100200-15100219 | None:intergenic | 20.0% |
!!! | TACCAAATCTTTTAATTTTG+AGG | + | chr1.2:15100904-15100923 | MS.gene026692:intron | 20.0% |
!!! | TCACTTAACCATTTTTTATA+TGG | + | chr1.2:15100189-15100208 | MS.gene026692:intron | 20.0% |
!!! | TGAATGAAATTTTGATTGAA+GGG | + | chr1.2:15100228-15100247 | MS.gene026692:intron | 20.0% |
!!! | TTGAATGAAATTTTGATTGA+AGG | + | chr1.2:15100227-15100246 | MS.gene026692:intron | 20.0% |
! | AACAAAACTGACGTATTTAA+AGG | - | chr1.2:15100638-15100657 | None:intergenic | 25.0% |
! | ACAAAACTGACGTATTTAAA+GGG | - | chr1.2:15100637-15100656 | None:intergenic | 25.0% |
! | ATCTAATAGAAGCAATTAAG+GGG | - | chr1.2:15100112-15100131 | None:intergenic | 25.0% |
! | CTCCTCAAAATTAAAAGATT+TGG | - | chr1.2:15100909-15100928 | None:intergenic | 25.0% |
! | GAATCTAATAGAAGCAATTA+AGG | - | chr1.2:15100114-15100133 | None:intergenic | 25.0% |
! | TGTGTCTAAATTTATGAACA+AGG | + | chr1.2:15101157-15101176 | MS.gene026692:CDS | 25.0% |
!! | CTTTTCTTCTGTTTAATCTA+AGG | - | chr1.2:15100813-15100832 | None:intergenic | 25.0% |
!! | GTGTGAGTGTTATAAATTTT+GGG | + | chr1.2:15100346-15100365 | MS.gene026692:intron | 25.0% |
!! | TGTGAGTGTTATAAATTTTG+GGG | + | chr1.2:15100347-15100366 | MS.gene026692:intron | 25.0% |
!! | TGTGTGAGTGTTATAAATTT+TGG | + | chr1.2:15100345-15100364 | MS.gene026692:intron | 25.0% |
!! | TTAAAAAAGGTTTGAGATCT+TGG | + | chr1.2:15100388-15100407 | MS.gene026692:intron | 25.0% |
!! | TTTGTTGTCTGTGTATATAT+TGG | - | chr1.2:15100701-15100720 | None:intergenic | 25.0% |
!!! | GAATGAAATTTTGATTGAAG+GGG | + | chr1.2:15100229-15100248 | MS.gene026692:intron | 25.0% |
AAAGAGATAGAGGTCAAATA+TGG | - | chr1.2:15100276-15100295 | None:intergenic | 30.0% | |
AAGAGATAGAGGTCAAATAT+GGG | - | chr1.2:15100275-15100294 | None:intergenic | 30.0% | |
ATAAAATGAGAGAAAAGGTG+TGG | + | chr1.2:15100593-15100612 | MS.gene026692:intron | 30.0% | |
ATTTACTATGGACGATGAAT+AGG | + | chr1.2:15101240-15101259 | MS.gene026692:CDS | 30.0% | |
CTACTATGAAATTAGATACG+AGG | - | chr1.2:15100034-15100053 | None:intergenic | 30.0% | |
GTGTGGCGAAAAAAAAAATA+AGG | + | chr1.2:15100610-15100629 | MS.gene026692:intron | 30.0% | |
TTCTTCTGTTTAATCTAAGG+TGG | - | chr1.2:15100810-15100829 | None:intergenic | 30.0% | |
TTGCTTCTATTAGATTCTCA+AGG | + | chr1.2:15100117-15100136 | MS.gene026692:intron | 30.0% | |
! | AATAATCACTGATGATGCTA+AGG | + | chr1.2:15101118-15101137 | MS.gene026692:CDS | 30.0% |
! | TTAGATTCTCAAGGCATTAT+AGG | + | chr1.2:15100126-15100145 | MS.gene026692:intron | 30.0% |
!! | GGCTAAGATGTTTTTAATAG+AGG | - | chr1.2:15100961-15100980 | None:intergenic | 30.0% |
ATTCTCTTGATGCTCTACAT+TGG | - | chr1.2:15101207-15101226 | None:intergenic | 35.0% | |
CAAAAACTATCGCAAGAACA+TGG | + | chr1.2:15101304-15101323 | MS.gene026692:CDS | 35.0% | |
CAACATTCAACTTCAGCAAT+GGG | + | chr1.2:15101026-15101045 | MS.gene026692:CDS | 35.0% | |
TCATCAGTGATTATTGTGTC+TGG | - | chr1.2:15101113-15101132 | None:intergenic | 35.0% | |
TTCATCTAACAACAACCGTT+CGG | + | chr1.2:15099935-15099954 | MS.gene026692:CDS | 35.0% | |
TTTCCGCTGATGATTTACTA+TGG | + | chr1.2:15101228-15101247 | MS.gene026692:CDS | 35.0% | |
! | GTAGTCACATTTTTACAAGC+TGG | + | chr1.2:15100780-15100799 | MS.gene026692:intron | 35.0% |
! | TGTTCTTGCGATAGTTTTTG+AGG | - | chr1.2:15101304-15101323 | None:intergenic | 35.0% |
AACTATCGCAAGAACATGGA+TGG | + | chr1.2:15101308-15101327 | MS.gene026692:CDS | 40.0% | |
ACTATCGCAAGAACATGGAT+GGG | + | chr1.2:15101309-15101328 | MS.gene026692:CDS | 40.0% | |
ACTATGGACGATGAATAGGT+TGG | + | chr1.2:15101244-15101263 | MS.gene026692:CDS | 40.0% | |
AGAACATTCTGCATGACTCT+TGG | - | chr1.2:15101086-15101105 | None:intergenic | 40.0% | |
CCAACATTCAACTTCAGCAA+TGG | + | chr1.2:15101025-15101044 | MS.gene026692:CDS | 40.0% | |
CCATTGCTGAAGTTGAATGT+TGG | - | chr1.2:15101028-15101047 | None:intergenic | 40.0% | |
CGTCCATAGTAAATCATCAG+CGG | - | chr1.2:15101234-15101253 | None:intergenic | 40.0% | |
CTATGGACGATGAATAGGTT+GGG | + | chr1.2:15101245-15101264 | MS.gene026692:CDS | 40.0% | |
GAGCAGATCTGCATATACAA+TGG | + | chr1.2:15100426-15100445 | MS.gene026692:intron | 40.0% | |
GGGCAAGAATGATCTAACTT+GGG | + | chr1.2:15100153-15100172 | MS.gene026692:intron | 40.0% | |
TATGAACAAGGTCACAAGTG+AGG | + | chr1.2:15101169-15101188 | MS.gene026692:CDS | 40.0% | |
TCAACGTTGGTCATCATCAT+TGG | - | chr1.2:15101360-15101379 | None:intergenic | 40.0% | |
TCAGTGATTATTGTGTCTGG+TGG | - | chr1.2:15101110-15101129 | None:intergenic | 40.0% | |
! | GAACGGTTGTTGTTAGATGA+AGG | - | chr1.2:15099936-15099955 | None:intergenic | 40.0% |
!! | GTTGTTGGTGGTGTTTCTTT+CGG | - | chr1.2:15100982-15101001 | None:intergenic | 40.0% |
AACACCACCAACAACAACAC+TGG | + | chr1.2:15100987-15101006 | MS.gene026692:CDS | 45.0% | |
ACCAACAACAACACTGGCAT+TGG | + | chr1.2:15100993-15101012 | MS.gene026692:CDS | 45.0% | |
AGTTAGATCATTCTTGCCCG+AGG | - | chr1.2:15100152-15100171 | None:intergenic | 45.0% | |
CGGGCAAGAATGATCTAACT+TGG | + | chr1.2:15100152-15100171 | MS.gene026692:intron | 45.0% | |
! | AATGCCAGTGTTGTTGTTGG+TGG | - | chr1.2:15100994-15101013 | None:intergenic | 45.0% |
! | GATGAATAGGTTGGGCTTTG+AGG | + | chr1.2:15101253-15101272 | MS.gene026692:CDS | 45.0% |
! | TCCAATGCCAGTGTTGTTGT+TGG | - | chr1.2:15100997-15101016 | None:intergenic | 45.0% |
! | TCTCAAGGCATTATAGGCCT+CGG | + | chr1.2:15100132-15100151 | MS.gene026692:intron | 45.0% |
!! | GATGCTCTACATTGGCTTGT+TGG | - | chr1.2:15101199-15101218 | None:intergenic | 45.0% |
ACTCTTGGCACGTGACTGAT+GGG | - | chr1.2:15101071-15101090 | None:intergenic | 50.0% | |
AGGAGTCTGTTCGGTCTCTT+GGG | + | chr1.2:15101273-15101292 | MS.gene026692:CDS | 50.0% | |
TTCAACTTCAGCAATGGGCG+AGG | + | chr1.2:15101031-15101050 | MS.gene026692:CDS | 50.0% | |
! | CTCAAGGCATTATAGGCCTC+GGG | + | chr1.2:15100133-15100152 | MS.gene026692:intron | 50.0% |
!! | TGGGCTTTGAGGAGTCTGTT+CGG | + | chr1.2:15101264-15101283 | MS.gene026692:CDS | 50.0% |
ATGGATGGGTCAGGTGCTAG+TGG | + | chr1.2:15101323-15101342 | MS.gene026692:CDS | 55.0% | |
CAGAGCTTGAGTGTGCCGAA+CGG | - | chr1.2:15099953-15099972 | None:intergenic | 55.0% | |
CGCAAGAACATGGATGGGTC+AGG | + | chr1.2:15101314-15101333 | MS.gene026692:CDS | 55.0% | |
GACTCTTGGCACGTGACTGA+TGG | - | chr1.2:15101072-15101091 | None:intergenic | 55.0% | |
GAGGAGTCTGTTCGGTCTCT+TGG | + | chr1.2:15101272-15101291 | MS.gene026692:CDS | 55.0% | |
CGTTCGGCACACTCAAGCTC+TGG | + | chr1.2:15099951-15099970 | MS.gene026692:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.2 | gene | 15099918 | 15101379 | 15099918 | ID=MS.gene026692 |
chr1.2 | mRNA | 15099918 | 15101379 | 15099918 | ID=MS.gene026692.t1;Parent=MS.gene026692 |
chr1.2 | exon | 15099918 | 15099972 | 15099918 | ID=MS.gene026692.t1.exon1;Parent=MS.gene026692.t1 |
chr1.2 | CDS | 15099918 | 15099972 | 15099918 | ID=cds.MS.gene026692.t1;Parent=MS.gene026692.t1 |
chr1.2 | exon | 15100979 | 15101379 | 15100979 | ID=MS.gene026692.t1.exon2;Parent=MS.gene026692.t1 |
chr1.2 | CDS | 15100979 | 15101379 | 15100979 | ID=cds.MS.gene026692.t1;Parent=MS.gene026692.t1 |
Gene Sequence |
Protein sequence |