Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene026694.t1 | XP_013466407.1 | 91.3 | 172 | 15 | 0 | 1 | 172 | 1 | 172 | 7.50E-77 | 296.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene026694.t1 | O23310 | 54.2 | 96 | 44 | 0 | 50 | 145 | 19 | 114 | 3.1e-23 | 109.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene026694.t1 | A0A072VGA7 | 91.3 | 172 | 15 | 0 | 1 | 172 | 1 | 172 | 5.4e-77 | 296.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene026694.t1 | TF | NF-YB |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene026694.t1 | MTR_1g029070 | 91.279 | 172 | 15 | 0 | 1 | 172 | 1 | 172 | 2.43e-102 | 291 |
MS.gene026694.t1 | MTR_1g072790 | 48.333 | 120 | 54 | 2 | 57 | 172 | 34 | 149 | 5.90e-34 | 118 |
MS.gene026694.t1 | MTR_1g039040 | 55.056 | 89 | 40 | 0 | 57 | 145 | 11 | 99 | 8.25e-33 | 115 |
MS.gene026694.t1 | MTR_8g091720 | 57.143 | 91 | 39 | 0 | 57 | 147 | 33 | 123 | 1.57e-32 | 115 |
MS.gene026694.t1 | MTR_2g026710 | 54.255 | 94 | 43 | 0 | 57 | 150 | 22 | 115 | 2.25e-32 | 114 |
MS.gene026694.t1 | MTR_7g061270 | 46.903 | 113 | 49 | 1 | 57 | 169 | 31 | 132 | 2.31e-32 | 114 |
MS.gene026694.t1 | MTR_7g100650 | 46.903 | 113 | 49 | 1 | 57 | 169 | 31 | 132 | 2.34e-32 | 114 |
MS.gene026694.t1 | MTR_5g095740 | 48.246 | 114 | 52 | 1 | 39 | 145 | 3 | 116 | 1.11e-30 | 110 |
MS.gene026694.t1 | MTR_3g058980 | 55.056 | 89 | 40 | 0 | 57 | 145 | 32 | 120 | 2.95e-30 | 109 |
MS.gene026694.t1 | MTR_4g133938 | 48.182 | 110 | 57 | 0 | 53 | 162 | 20 | 129 | 5.87e-30 | 107 |
MS.gene026694.t1 | MTR_4g133952 | 50.538 | 93 | 46 | 0 | 57 | 149 | 63 | 155 | 9.51e-30 | 109 |
MS.gene026694.t1 | MTR_1g088860 | 44.037 | 109 | 61 | 0 | 37 | 145 | 21 | 129 | 4.37e-29 | 106 |
MS.gene026694.t1 | MTR_8g093920 | 52.809 | 89 | 42 | 0 | 57 | 145 | 45 | 133 | 1.87e-28 | 105 |
MS.gene026694.t1 | MTR_4g119500 | 50.000 | 88 | 44 | 0 | 57 | 144 | 27 | 114 | 1.88e-27 | 100 |
MS.gene026694.t1 | MTR_0392s0020 | 48.864 | 88 | 45 | 0 | 57 | 144 | 23 | 110 | 9.63e-27 | 98.6 |
MS.gene026694.t1 | MTR_1g028480 | 54.878 | 82 | 37 | 0 | 87 | 168 | 24 | 105 | 3.12e-26 | 96.7 |
MS.gene026694.t1 | MTR_1g029100 | 45.000 | 80 | 44 | 0 | 53 | 132 | 3 | 82 | 2.18e-21 | 83.6 |
MS.gene026694.t1 | MTR_1g083070 | 41.379 | 87 | 51 | 0 | 57 | 143 | 9 | 95 | 5.27e-21 | 83.6 |
MS.gene026694.t1 | MTR_5g095900 | 32.558 | 86 | 58 | 0 | 56 | 141 | 20 | 105 | 7.85e-13 | 63.5 |
MS.gene026694.t1 | MTR_2g056000 | 25.225 | 111 | 83 | 0 | 37 | 147 | 26 | 136 | 1.80e-11 | 60.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene026694.t1 | AT4G14540 | 54.167 | 96 | 44 | 0 | 50 | 145 | 19 | 114 | 6.95e-33 | 115 |
MS.gene026694.t1 | AT3G53340 | 47.748 | 111 | 47 | 1 | 57 | 167 | 34 | 133 | 5.04e-32 | 113 |
MS.gene026694.t1 | AT3G53340 | 47.748 | 111 | 47 | 1 | 57 | 167 | 34 | 133 | 5.04e-32 | 113 |
MS.gene026694.t1 | AT2G38880 | 49.107 | 112 | 53 | 2 | 57 | 168 | 26 | 133 | 5.55e-32 | 112 |
MS.gene026694.t1 | AT5G47640 | 53.763 | 93 | 43 | 0 | 57 | 149 | 32 | 124 | 8.90e-32 | 113 |
MS.gene026694.t1 | AT2G37060 | 46.552 | 116 | 59 | 2 | 57 | 172 | 35 | 147 | 1.01e-31 | 112 |
MS.gene026694.t1 | AT2G37060 | 46.552 | 116 | 59 | 2 | 57 | 172 | 35 | 147 | 1.01e-31 | 112 |
MS.gene026694.t1 | AT2G37060 | 46.552 | 116 | 59 | 2 | 57 | 172 | 35 | 147 | 1.01e-31 | 112 |
MS.gene026694.t1 | AT2G38880 | 49.123 | 114 | 52 | 2 | 57 | 168 | 26 | 135 | 1.73e-31 | 110 |
MS.gene026694.t1 | AT2G38880 | 49.123 | 114 | 52 | 2 | 57 | 168 | 26 | 135 | 2.25e-31 | 110 |
MS.gene026694.t1 | AT2G38880 | 49.123 | 114 | 52 | 2 | 57 | 168 | 26 | 135 | 2.25e-31 | 110 |
MS.gene026694.t1 | AT2G38880 | 49.123 | 114 | 52 | 2 | 57 | 168 | 26 | 135 | 2.25e-31 | 110 |
MS.gene026694.t1 | AT5G47670 | 52.809 | 89 | 42 | 0 | 57 | 145 | 34 | 122 | 2.85e-30 | 109 |
MS.gene026694.t1 | AT5G47670 | 44.715 | 123 | 57 | 2 | 26 | 145 | 37 | 151 | 6.44e-30 | 109 |
MS.gene026694.t1 | AT5G47670 | 44.715 | 123 | 57 | 2 | 26 | 145 | 37 | 151 | 6.44e-30 | 109 |
MS.gene026694.t1 | AT3G53340 | 53.571 | 84 | 39 | 0 | 57 | 140 | 34 | 117 | 7.28e-30 | 106 |
MS.gene026694.t1 | AT2G38880 | 53.571 | 84 | 39 | 0 | 57 | 140 | 26 | 109 | 1.02e-29 | 105 |
MS.gene026694.t1 | AT3G53340 | 51.685 | 89 | 43 | 0 | 57 | 145 | 34 | 122 | 1.41e-29 | 106 |
MS.gene026694.t1 | AT3G53340 | 51.685 | 89 | 43 | 0 | 57 | 145 | 34 | 122 | 1.41e-29 | 106 |
MS.gene026694.t1 | AT2G38880 | 53.571 | 84 | 39 | 0 | 57 | 140 | 26 | 109 | 2.63e-29 | 106 |
MS.gene026694.t1 | AT2G38880 | 53.571 | 84 | 39 | 0 | 57 | 140 | 26 | 109 | 2.63e-29 | 106 |
MS.gene026694.t1 | AT2G13570 | 53.933 | 89 | 41 | 0 | 57 | 145 | 41 | 129 | 2.83e-29 | 107 |
MS.gene026694.t1 | AT1G21970 | 48.077 | 104 | 52 | 1 | 42 | 143 | 47 | 150 | 3.43e-29 | 107 |
MS.gene026694.t1 | AT2G38880 | 53.571 | 84 | 39 | 0 | 57 | 140 | 26 | 109 | 7.53e-29 | 104 |
MS.gene026694.t1 | AT2G38880 | 53.571 | 84 | 39 | 0 | 57 | 140 | 26 | 109 | 7.53e-29 | 104 |
MS.gene026694.t1 | AT2G38880 | 53.571 | 84 | 39 | 0 | 57 | 140 | 26 | 109 | 7.53e-29 | 104 |
MS.gene026694.t1 | AT2G47810 | 43.363 | 113 | 56 | 1 | 57 | 169 | 56 | 160 | 6.75e-27 | 99.8 |
MS.gene026694.t1 | AT1G09030 | 42.105 | 95 | 55 | 0 | 51 | 145 | 2 | 96 | 1.88e-24 | 92.8 |
MS.gene026694.t1 | AT5G08190 | 27.434 | 113 | 77 | 2 | 46 | 158 | 5 | 112 | 5.65e-11 | 58.5 |
MS.gene026694.t1 | AT5G08190 | 30.952 | 84 | 58 | 0 | 46 | 129 | 5 | 88 | 9.84e-11 | 57.8 |
Find 47 sgRNAs with CRISPR-Local
Find 97 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CATTAATTGCATATCAATAT+TGG | 0.281359 | 1.2:-15088138 | None:intergenic |
GCATGATTCTTGTCAAATTT+CGG | 0.290312 | 1.2:-15087805 | None:intergenic |
CCTCATGGTTGCGATAGTTT+TGG | 0.293177 | 1.2:-15088036 | None:intergenic |
TTAGTGGTGAAGATATAATA+TGG | 0.337402 | 1.2:+15087960 | MS.gene026694:CDS |
CATGGGTAGGTTAGGGTTTG+AGG | 0.343933 | 1.2:+15087985 | MS.gene026694:CDS |
ATATGGGCCATGGGTAGGTT+AGG | 0.348171 | 1.2:+15087977 | MS.gene026694:CDS |
CTGAAAACAATGAATCTCTA+AGG | 0.379089 | 1.2:+15087708 | MS.gene026694:CDS |
ATTGTGTGTGTCTGATTTCA+TGG | 0.410886 | 1.2:+15087883 | MS.gene026694:CDS |
AACATGGATGGGTCGGGTGC+TGG | 0.425049 | 1.2:+15088094 | MS.gene026694:CDS |
CACAGTTCCTCATTTGTTGT+TGG | 0.457296 | 1.2:-15087773 | None:intergenic |
ACACAATTGTGTTGTTGCCT+TGG | 0.463454 | 1.2:-15087867 | None:intergenic |
GATTTAGTTCGTTTGCAAGC+AGG | 0.483984 | 1.2:+15087677 | MS.gene026694:intron |
ATGGATGGGTCGGGTGCTGG+TGG | 0.486211 | 1.2:+15088097 | MS.gene026694:CDS |
TATGGGCCATGGGTAGGTTA+GGG | 0.487469 | 1.2:+15087978 | MS.gene026694:CDS |
CTCATTTAACAACATCCGTT+CGG | 0.488776 | 1.2:+15086453 | MS.gene026694:CDS |
TGGATTCAACATGGATGGGT+CGG | 0.500255 | 1.2:+15088087 | MS.gene026694:CDS |
GAGAGTCTAAAGATCATTAG+TGG | 0.502204 | 1.2:+15087944 | MS.gene026694:CDS |
CGAACGGATGTTGTTAAATG+AGG | 0.506308 | 1.2:-15086452 | None:intergenic |
AGTTCCTCATTTGTTGTTGG+AGG | 0.507953 | 1.2:-15087770 | None:intergenic |
GGATTCAACATGGATGGGTC+GGG | 0.516213 | 1.2:+15088088 | MS.gene026694:CDS |
ATTTAGTTCGTTTGCAAGCA+GGG | 0.516846 | 1.2:+15087678 | MS.gene026694:intron |
GATTCTTGTCAAATTTCGGA+TGG | 0.519326 | 1.2:-15087801 | None:intergenic |
TTAGGGTTTGAGGACTATGT+TGG | 0.522305 | 1.2:+15087995 | MS.gene026694:CDS |
TGAAGATATAATATGGGCCA+TGG | 0.523399 | 1.2:+15087967 | MS.gene026694:CDS |
CGTTCGGCACAATCAAGCTC+TGG | 0.526925 | 1.2:+15086469 | MS.gene026694:CDS |
GCTCGTGGATTCAACATGGA+TGG | 0.528087 | 1.2:+15088082 | MS.gene026694:CDS |
GGTGCTGGTGGCTCGAGCAG+TGG | 0.541755 | 1.2:+15088109 | MS.gene026694:CDS |
TAGTGGTGAAGATATAATAT+GGG | 0.544148 | 1.2:+15087961 | MS.gene026694:CDS |
GGTGGCTCGAGCAGTGGTAA+TGG | 0.549299 | 1.2:+15088115 | MS.gene026694:CDS |
AGTGGCATGTTAACTGCTCG+TGG | 0.555971 | 1.2:+15088067 | MS.gene026694:CDS |
TCCTAAAGCAGCATGGAGCA+TGG | 0.576127 | 1.2:+15086424 | None:intergenic |
AACCATGAGGCTCAATTCAG+TGG | 0.580561 | 1.2:+15088049 | MS.gene026694:CDS |
CTCGTGGATTCAACATGGAT+GGG | 0.584715 | 1.2:+15088083 | MS.gene026694:CDS |
GAACGGATGTTGTTAAATGA+GGG | 0.585718 | 1.2:-15086451 | None:intergenic |
TTTACCTCCAACAACAAATG+AGG | 0.591369 | 1.2:+15087766 | MS.gene026694:CDS |
ATTCTTGTCAAATTTCGGAT+GGG | 0.595454 | 1.2:-15087800 | None:intergenic |
TTGTGTGTGTCTGATTTCAT+GGG | 0.598205 | 1.2:+15087884 | MS.gene026694:CDS |
ATATAATATGGGCCATGGGT+AGG | 0.601954 | 1.2:+15087972 | MS.gene026694:CDS |
CTCAAACCCTAACCTACCCA+TGG | 0.607706 | 1.2:-15087984 | None:intergenic |
GAAGATATAATATGGGCCAT+GGG | 0.615040 | 1.2:+15087968 | MS.gene026694:CDS |
CAGAGCTTGATTGTGCCGAA+CGG | 0.616322 | 1.2:-15086468 | None:intergenic |
GCATTTCTCAACAGCCTCAG+TGG | 0.623536 | 1.2:-15087915 | None:intergenic |
TGCCACTGAATTGAGCCTCA+TGG | 0.667350 | 1.2:-15088051 | None:intergenic |
AACTGCTCGTGGATTCAACA+TGG | 0.682600 | 1.2:+15088078 | MS.gene026694:CDS |
GAAATTTGACAAGAATCATG+CGG | 0.699293 | 1.2:+15087807 | MS.gene026694:CDS |
CCAAAACTATCGCAACCATG+AGG | 0.711644 | 1.2:+15088036 | MS.gene026694:CDS |
CATGGGCATCATCACCACTG+AGG | 0.758004 | 1.2:+15087901 | MS.gene026694:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATCTAATAAAAGAAATTAA+GGG | - | chr1.2:15086736-15086755 | None:intergenic | 10.0% |
!!! | ATTATTGTATTTAAAACTAA+TGG | + | chr1.2:15087139-15087158 | MS.gene026694:intron | 10.0% |
!!! | TTATTGTATTTAAAACTAAT+GGG | + | chr1.2:15087140-15087159 | MS.gene026694:intron | 10.0% |
!! | ATCTAATAAAAGAAATTAAG+GGG | - | chr1.2:15086735-15086754 | None:intergenic | 15.0% |
!! | GAATCTAATAAAAGAAATTA+AGG | - | chr1.2:15086737-15086756 | None:intergenic | 15.0% |
!!! | ATCACTTTTTTTTTTTTTGA+AGG | + | chr1.2:15086810-15086829 | MS.gene026694:intron | 15.0% |
!!! | TATTATTTTAATATGTCTGA+GGG | + | chr1.2:15086977-15086996 | MS.gene026694:intron | 15.0% |
!!! | TATTGTATTTAAAACTAATG+GGG | + | chr1.2:15087141-15087160 | MS.gene026694:intron | 15.0% |
!!! | TTATTATTTTAATATGTCTG+AGG | + | chr1.2:15086976-15086995 | MS.gene026694:intron | 15.0% |
!!! | TTTTTCTACTTTTAAATCTA+AGG | - | chr1.2:15087469-15087488 | None:intergenic | 15.0% |
!! | TCTAATAAAAGAAATTAAGG+GGG | - | chr1.2:15086734-15086753 | None:intergenic | 20.0% |
!!! | ATCAAAATCAATCTTTTACA+AGG | - | chr1.2:15086641-15086660 | None:intergenic | 20.0% |
!!! | TATTATTTTAGAGAAATACG+AGG | - | chr1.2:15086558-15086577 | None:intergenic | 20.0% |
!!! | TTTCTTTTATTAGATTCTCA+AGG | + | chr1.2:15086740-15086759 | MS.gene026694:intron | 20.0% |
! | AACAAAACTTGCGTATTTAA+GGG | - | chr1.2:15087279-15087298 | None:intergenic | 25.0% |
! | ACTCATTATAAAGAGATACA+AGG | - | chr1.2:15086529-15086548 | None:intergenic | 25.0% |
! | ACTCTGTGTAATAAAAAAGA+AGG | + | chr1.2:15087541-15087560 | MS.gene026694:intron | 25.0% |
! | CTCATTATAAAGAGATACAA+GGG | - | chr1.2:15086528-15086547 | None:intergenic | 25.0% |
! | TAACAAAACTTGCGTATTTA+AGG | - | chr1.2:15087280-15087299 | None:intergenic | 25.0% |
! | TAGAAATAAAGTGAGAGAAA+AGG | + | chr1.2:15087230-15087249 | MS.gene026694:intron | 25.0% |
! | TAGTGGTGAAGATATAATAT+GGG | + | chr1.2:15087961-15087980 | MS.gene026694:CDS | 25.0% |
! | TTAGTGGTGAAGATATAATA+TGG | + | chr1.2:15087960-15087979 | MS.gene026694:CDS | 25.0% |
! | TTCATTGTTGATCTATCTAA+TGG | + | chr1.2:15087305-15087324 | MS.gene026694:intron | 25.0% |
!! | AATTTCAGCATCAATGTTTT+CGG | - | chr1.2:15087735-15087754 | None:intergenic | 25.0% |
!! | CTAAAAAAGATTTGAGATCT+TGG | + | chr1.2:15087033-15087052 | MS.gene026694:intron | 25.0% |
!!! | TTCTACTTTTAAATCTAAGG+TGG | - | chr1.2:15087466-15087485 | None:intergenic | 25.0% |
!!! | TTTTTAGTGTGAATCGAATT+CGG | - | chr1.2:15087020-15087039 | None:intergenic | 25.0% |
AAAAATATCTCAAGATGCCA+AGG | + | chr1.2:15087850-15087869 | MS.gene026694:CDS | 30.0% | |
AAATAAAGTGAGAGAAAAGG+TGG | + | chr1.2:15087233-15087252 | MS.gene026694:intron | 30.0% | |
AAATTGAGAGAAAGAGATAG+AGG | - | chr1.2:15086931-15086950 | None:intergenic | 30.0% | |
AATAAAGTGAGAGAAAAGGT+GGG | + | chr1.2:15087234-15087253 | MS.gene026694:intron | 30.0% | |
ACAAAACTTGCGTATTTAAG+GGG | - | chr1.2:15087278-15087297 | None:intergenic | 30.0% | |
ATTCTTGTCAAATTTCGGAT+GGG | - | chr1.2:15087803-15087822 | None:intergenic | 30.0% | |
CTGAAAACAATGAATCTCTA+AGG | + | chr1.2:15087708-15087727 | MS.gene026694:CDS | 30.0% | |
GAAATTTGACAAGAATCATG+CGG | + | chr1.2:15087807-15087826 | MS.gene026694:CDS | 30.0% | |
GCATGATTCTTGTCAAATTT+CGG | - | chr1.2:15087808-15087827 | None:intergenic | 30.0% | |
TATTTGAGAGAAAGAGATAG+AGG | - | chr1.2:15086903-15086922 | None:intergenic | 30.0% | |
! | AGAGATTCATTGTTTTCAGA+TGG | - | chr1.2:15087707-15087726 | None:intergenic | 30.0% |
! | GTCTGAGGGTTATAAATTTT+GGG | + | chr1.2:15086991-15087010 | MS.gene026694:intron | 30.0% |
! | TCTGAGGGTTATAAATTTTG+GGG | + | chr1.2:15086992-15087011 | MS.gene026694:intron | 30.0% |
! | TGTCTGAGGGTTATAAATTT+TGG | + | chr1.2:15086990-15087009 | MS.gene026694:intron | 30.0% |
!!! | CTTGTTAGCGATTTTTTACA+CGG | + | chr1.2:15086846-15086865 | MS.gene026694:intron | 30.0% |
!!! | TTGTTAGCGATTTTTTACAC+GGG | + | chr1.2:15086847-15086866 | MS.gene026694:intron | 30.0% |
ATTGTGTGTGTCTGATTTCA+TGG | + | chr1.2:15087883-15087902 | MS.gene026694:CDS | 35.0% | |
CGGAAAGAAAGATCTAACTT+GGG | + | chr1.2:15086775-15086794 | MS.gene026694:intron | 35.0% | |
CTCATTTAACAACATCCGTT+CGG | + | chr1.2:15086453-15086472 | MS.gene026694:CDS | 35.0% | |
CTTAACTACGTGCTTATGTT+TGG | + | chr1.2:15087655-15087674 | MS.gene026694:intron | 35.0% | |
GAACGGATGTTGTTAAATGA+GGG | - | chr1.2:15086454-15086473 | None:intergenic | 35.0% | |
GAAGATATAATATGGGCCAT+GGG | + | chr1.2:15087968-15087987 | MS.gene026694:CDS | 35.0% | |
GAGAGTCTAAAGATCATTAG+TGG | + | chr1.2:15087944-15087963 | MS.gene026694:CDS | 35.0% | |
GATTCTTGTCAAATTTCGGA+TGG | - | chr1.2:15087804-15087823 | None:intergenic | 35.0% | |
GGTGGGTGAAAAAATAAACA+AGG | + | chr1.2:15087251-15087270 | MS.gene026694:intron | 35.0% | |
TCGGAAAGAAAGATCTAACT+TGG | + | chr1.2:15086774-15086793 | MS.gene026694:intron | 35.0% | |
TGAAGATATAATATGGGCCA+TGG | + | chr1.2:15087967-15087986 | MS.gene026694:CDS | 35.0% | |
TTGTGTGTGTCTGATTTCAT+GGG | + | chr1.2:15087884-15087903 | MS.gene026694:CDS | 35.0% | |
TTTACCTCCAACAACAAATG+AGG | + | chr1.2:15087766-15087785 | MS.gene026694:CDS | 35.0% | |
! | ATTTAGTTCGTTTGCAAGCA+GGG | + | chr1.2:15087678-15087697 | MS.gene026694:intron | 35.0% |
! | TCTCAAGGCATTATTTGCTT+CGG | + | chr1.2:15086755-15086774 | MS.gene026694:intron | 35.0% |
! | TTTTGTGTCTGTGTAGATAC+CGG | - | chr1.2:15087342-15087361 | None:intergenic | 35.0% |
!! | TGAGATATTTTTGCGTACGT+TGG | - | chr1.2:15087842-15087861 | None:intergenic | 35.0% |
ACATCATCACATGACGTTAG+TGG | - | chr1.2:15087417-15087436 | None:intergenic | 40.0% | |
ATATAATATGGGCCATGGGT+AGG | + | chr1.2:15087972-15087991 | MS.gene026694:CDS | 40.0% | |
CGAACGGATGTTGTTAAATG+AGG | - | chr1.2:15086455-15086474 | None:intergenic | 40.0% | |
TCTAATGGTGTGAAGCTAAC+CGG | + | chr1.2:15087320-15087339 | MS.gene026694:intron | 40.0% | |
TTAGGGTTTGAGGACTATGT+TGG | + | chr1.2:15087995-15088014 | MS.gene026694:CDS | 40.0% | |
! | ACACAATTGTGTTGTTGCCT+TGG | - | chr1.2:15087870-15087889 | None:intergenic | 40.0% |
! | GATTTAGTTCGTTTGCAAGC+AGG | + | chr1.2:15087677-15087696 | MS.gene026694:intron | 40.0% |
! | TGTAGTCACCTTTTACATGC+TGG | + | chr1.2:15087436-15087455 | MS.gene026694:intron | 40.0% |
!! | AGTTCCTCATTTGTTGTTGG+AGG | - | chr1.2:15087773-15087792 | None:intergenic | 40.0% |
!! | CACAGTTCCTCATTTGTTGT+TGG | - | chr1.2:15087776-15087795 | None:intergenic | 40.0% |
!! | TTTTGGAGGAGAAGAGATAG+AGG | - | chr1.2:15088022-15088041 | None:intergenic | 40.0% |
AACCATGAGGCTCAATTCAG+TGG | + | chr1.2:15088049-15088068 | MS.gene026694:CDS | 45.0% | |
AACTGCTCGTGGATTCAACA+TGG | + | chr1.2:15088078-15088097 | MS.gene026694:CDS | 45.0% | |
CCAAAACTATCGCAACCATG+AGG | + | chr1.2:15088036-15088055 | MS.gene026694:CDS | 45.0% | |
CTCGTGGATTCAACATGGAT+GGG | + | chr1.2:15088083-15088102 | MS.gene026694:CDS | 45.0% | |
GAGCAGATCTGCGTATACAA+TGG | + | chr1.2:15087071-15087090 | MS.gene026694:intron | 45.0% | |
GTGGCAAACCAGCATGTAAA+AGG | - | chr1.2:15087447-15087466 | None:intergenic | 45.0% | |
TGGATTCAACATGGATGGGT+CGG | + | chr1.2:15088087-15088106 | MS.gene026694:CDS | 45.0% | |
! | CCTCATGGTTGCGATAGTTT+TGG | - | chr1.2:15088039-15088058 | None:intergenic | 45.0% |
!!! | CATGGTTGCGATAGTTTTGG+AGG | - | chr1.2:15088036-15088055 | None:intergenic | 45.0% |
!! | AATAATAAATTAATTATTTG+AGG | + | chr1.2:15087179-15087198 | MS.gene026694:intron | 5.0% |
AGTGGCATGTTAACTGCTCG+TGG | + | chr1.2:15088067-15088086 | MS.gene026694:CDS | 50.0% | |
ATATGGGCCATGGGTAGGTT+AGG | + | chr1.2:15087977-15087996 | MS.gene026694:CDS | 50.0% | |
CAGAGCTTGATTGTGCCGAA+CGG | - | chr1.2:15086471-15086490 | None:intergenic | 50.0% | |
CATGGGTAGGTTAGGGTTTG+AGG | + | chr1.2:15087985-15088004 | MS.gene026694:CDS | 50.0% | |
CTCAAACCCTAACCTACCCA+TGG | - | chr1.2:15087987-15088006 | None:intergenic | 50.0% | |
GCATTTCTCAACAGCCTCAG+TGG | - | chr1.2:15087918-15087937 | None:intergenic | 50.0% | |
GCTCGTGGATTCAACATGGA+TGG | + | chr1.2:15088082-15088101 | MS.gene026694:CDS | 50.0% | |
GGATTCAACATGGATGGGTC+GGG | + | chr1.2:15088088-15088107 | MS.gene026694:CDS | 50.0% | |
TATGGGCCATGGGTAGGTTA+GGG | + | chr1.2:15087978-15087997 | MS.gene026694:CDS | 50.0% | |
TGCCACTGAATTGAGCCTCA+TGG | - | chr1.2:15088054-15088073 | None:intergenic | 50.0% | |
CATGGGCATCATCACCACTG+AGG | + | chr1.2:15087901-15087920 | MS.gene026694:CDS | 55.0% | |
CGTTCGGCACAATCAAGCTC+TGG | + | chr1.2:15086469-15086488 | MS.gene026694:CDS | 55.0% | |
AACATGGATGGGTCGGGTGC+TGG | + | chr1.2:15088094-15088113 | MS.gene026694:CDS | 60.0% | |
GGTGGCTCGAGCAGTGGTAA+TGG | + | chr1.2:15088115-15088134 | MS.gene026694:CDS | 60.0% | |
!! | ATGGATGGGTCGGGTGCTGG+TGG | + | chr1.2:15088097-15088116 | MS.gene026694:CDS | 65.0% |
!! | GGTGCTGGTGGCTCGAGCAG+TGG | + | chr1.2:15088109-15088128 | MS.gene026694:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.2 | gene | 15086436 | 15088147 | 15086436 | ID=MS.gene026694 |
chr1.2 | mRNA | 15086436 | 15088147 | 15086436 | ID=MS.gene026694.t1;Parent=MS.gene026694 |
chr1.2 | exon | 15086436 | 15086490 | 15086436 | ID=MS.gene026694.t1.exon1;Parent=MS.gene026694.t1 |
chr1.2 | CDS | 15086436 | 15086490 | 15086436 | ID=cds.MS.gene026694.t1;Parent=MS.gene026694.t1 |
chr1.2 | exon | 15087684 | 15088147 | 15087684 | ID=MS.gene026694.t1.exon2;Parent=MS.gene026694.t1 |
chr1.2 | CDS | 15087684 | 15088147 | 15087684 | ID=cds.MS.gene026694.t1;Parent=MS.gene026694.t1 |
Gene Sequence |
Protein sequence |