Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene026695.t1 | XP_013466407.1 | 66.9 | 172 | 25 | 2 | 1 | 140 | 1 | 172 | 4.60E-48 | 200.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene026695.t1 | O23310 | 59.3 | 91 | 37 | 0 | 27 | 117 | 19 | 109 | 3.9e-24 | 112.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene026695.t1 | A0A072VGA7 | 66.9 | 172 | 25 | 2 | 1 | 140 | 1 | 172 | 3.3e-48 | 200.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene026695.t1 | TF | NF-YB |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene026695.t1 | MTR_1g029070 | 65.823 | 158 | 22 | 2 | 1 | 126 | 1 | 158 | 3.97e-65 | 196 |
MS.gene026695.t1 | MTR_1g072790 | 49.167 | 120 | 57 | 1 | 20 | 139 | 20 | 135 | 2.68e-35 | 120 |
MS.gene026695.t1 | MTR_8g091720 | 54.286 | 105 | 38 | 1 | 23 | 117 | 12 | 116 | 5.88e-35 | 120 |
MS.gene026695.t1 | MTR_7g061270 | 48.624 | 109 | 54 | 1 | 28 | 136 | 25 | 131 | 9.96e-34 | 116 |
MS.gene026695.t1 | MTR_7g100650 | 48.624 | 109 | 54 | 1 | 28 | 136 | 25 | 131 | 1.21e-33 | 116 |
MS.gene026695.t1 | MTR_1g039040 | 53.333 | 90 | 42 | 0 | 28 | 117 | 5 | 94 | 4.11e-33 | 115 |
MS.gene026695.t1 | MTR_5g095740 | 55.914 | 93 | 40 | 1 | 25 | 117 | 20 | 111 | 5.89e-33 | 114 |
MS.gene026695.t1 | MTR_2g026710 | 56.667 | 90 | 39 | 0 | 28 | 117 | 16 | 105 | 9.91e-33 | 113 |
MS.gene026695.t1 | MTR_3g058980 | 55.914 | 93 | 40 | 1 | 25 | 117 | 24 | 115 | 2.25e-32 | 113 |
MS.gene026695.t1 | MTR_4g133938 | 55.319 | 94 | 42 | 0 | 24 | 117 | 14 | 107 | 1.06e-30 | 107 |
MS.gene026695.t1 | MTR_4g133952 | 44.954 | 109 | 54 | 1 | 9 | 117 | 44 | 146 | 4.61e-30 | 108 |
MS.gene026695.t1 | MTR_8g093920 | 52.941 | 85 | 40 | 0 | 34 | 118 | 45 | 129 | 2.70e-29 | 106 |
MS.gene026695.t1 | MTR_1g088860 | 53.571 | 84 | 39 | 0 | 34 | 117 | 41 | 124 | 9.21e-29 | 104 |
MS.gene026695.t1 | MTR_4g119500 | 42.982 | 114 | 55 | 1 | 4 | 117 | 7 | 110 | 1.43e-28 | 102 |
MS.gene026695.t1 | MTR_0392s0020 | 50.000 | 84 | 42 | 0 | 34 | 117 | 23 | 106 | 1.66e-27 | 99.4 |
MS.gene026695.t1 | MTR_1g028480 | 53.488 | 86 | 31 | 1 | 60 | 136 | 20 | 105 | 1.03e-25 | 94.0 |
MS.gene026695.t1 | MTR_1g029100 | 45.000 | 80 | 44 | 0 | 30 | 109 | 3 | 82 | 1.95e-23 | 87.8 |
MS.gene026695.t1 | MTR_1g083070 | 42.857 | 84 | 48 | 0 | 34 | 117 | 9 | 92 | 5.77e-22 | 85.1 |
MS.gene026695.t1 | MTR_5g095900 | 35.632 | 87 | 56 | 0 | 34 | 120 | 21 | 107 | 2.80e-14 | 66.6 |
MS.gene026695.t1 | MTR_2g056000 | 24.194 | 124 | 93 | 1 | 11 | 134 | 24 | 146 | 1.98e-12 | 61.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene026695.t1 | AT4G14540 | 59.341 | 91 | 37 | 0 | 27 | 117 | 19 | 109 | 1.60e-35 | 120 |
MS.gene026695.t1 | AT2G38880 | 50.877 | 114 | 54 | 2 | 22 | 135 | 14 | 125 | 1.43e-34 | 117 |
MS.gene026695.t1 | AT2G38880 | 50.877 | 114 | 52 | 2 | 22 | 135 | 14 | 123 | 1.47e-34 | 117 |
MS.gene026695.t1 | AT2G38880 | 50.877 | 114 | 54 | 2 | 22 | 135 | 14 | 125 | 1.76e-34 | 117 |
MS.gene026695.t1 | AT2G38880 | 50.877 | 114 | 54 | 2 | 22 | 135 | 14 | 125 | 1.76e-34 | 117 |
MS.gene026695.t1 | AT2G38880 | 50.877 | 114 | 54 | 2 | 22 | 135 | 14 | 125 | 1.76e-34 | 117 |
MS.gene026695.t1 | AT3G53340 | 46.903 | 113 | 60 | 0 | 27 | 139 | 27 | 139 | 1.12e-33 | 116 |
MS.gene026695.t1 | AT3G53340 | 46.903 | 113 | 60 | 0 | 27 | 139 | 27 | 139 | 1.12e-33 | 116 |
MS.gene026695.t1 | AT5G47640 | 57.447 | 94 | 39 | 1 | 25 | 118 | 24 | 116 | 1.23e-33 | 116 |
MS.gene026695.t1 | AT2G38880 | 52.128 | 94 | 45 | 0 | 24 | 117 | 16 | 109 | 1.15e-32 | 112 |
MS.gene026695.t1 | AT2G38880 | 51.042 | 96 | 47 | 0 | 22 | 117 | 14 | 109 | 2.70e-32 | 112 |
MS.gene026695.t1 | AT2G38880 | 51.042 | 96 | 47 | 0 | 22 | 117 | 14 | 109 | 2.70e-32 | 112 |
MS.gene026695.t1 | AT2G37060 | 47.899 | 119 | 56 | 2 | 27 | 139 | 28 | 146 | 4.28e-32 | 112 |
MS.gene026695.t1 | AT2G37060 | 47.899 | 119 | 56 | 2 | 27 | 139 | 28 | 146 | 4.28e-32 | 112 |
MS.gene026695.t1 | AT2G37060 | 47.899 | 119 | 56 | 2 | 27 | 139 | 28 | 146 | 4.28e-32 | 112 |
MS.gene026695.t1 | AT3G53340 | 52.747 | 91 | 43 | 0 | 27 | 117 | 27 | 117 | 5.59e-32 | 110 |
MS.gene026695.t1 | AT2G38880 | 52.128 | 94 | 45 | 0 | 24 | 117 | 16 | 109 | 8.90e-32 | 110 |
MS.gene026695.t1 | AT2G38880 | 52.128 | 94 | 45 | 0 | 24 | 117 | 16 | 109 | 8.90e-32 | 110 |
MS.gene026695.t1 | AT2G38880 | 52.128 | 94 | 45 | 0 | 24 | 117 | 16 | 109 | 8.90e-32 | 110 |
MS.gene026695.t1 | AT3G53340 | 52.747 | 91 | 43 | 0 | 27 | 117 | 27 | 117 | 6.56e-31 | 108 |
MS.gene026695.t1 | AT3G53340 | 52.747 | 91 | 43 | 0 | 27 | 117 | 27 | 117 | 6.56e-31 | 108 |
MS.gene026695.t1 | AT2G13570 | 44.444 | 117 | 65 | 0 | 2 | 118 | 9 | 125 | 1.84e-30 | 109 |
MS.gene026695.t1 | AT1G21970 | 50.000 | 90 | 45 | 0 | 28 | 117 | 58 | 147 | 3.24e-30 | 109 |
MS.gene026695.t1 | AT5G47670 | 49.451 | 91 | 46 | 0 | 27 | 117 | 27 | 117 | 3.53e-30 | 108 |
MS.gene026695.t1 | AT5G47670 | 49.451 | 91 | 46 | 0 | 27 | 117 | 56 | 146 | 6.53e-30 | 108 |
MS.gene026695.t1 | AT5G47670 | 49.451 | 91 | 46 | 0 | 27 | 117 | 56 | 146 | 6.53e-30 | 108 |
MS.gene026695.t1 | AT2G47810 | 50.000 | 84 | 42 | 0 | 34 | 117 | 56 | 139 | 2.76e-27 | 99.8 |
MS.gene026695.t1 | AT1G09030 | 44.944 | 89 | 48 | 1 | 30 | 117 | 3 | 91 | 2.88e-24 | 91.3 |
MS.gene026695.t1 | AT5G08190 | 29.060 | 117 | 79 | 2 | 20 | 136 | 3 | 115 | 6.60e-13 | 62.4 |
MS.gene026695.t1 | AT5G08190 | 30.392 | 102 | 67 | 2 | 20 | 121 | 3 | 100 | 3.92e-12 | 60.5 |
Find 38 sgRNAs with CRISPR-Local
Find 89 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AACTATCGCAACCATGCTTA+TGG | 0.229358 | 1.2:+15081710 | MS.gene026695:CDS |
GATTCTTGTCAAATTTCTAA+TGG | 0.267704 | 1.2:-15081471 | None:intergenic |
TTAGTGGTGAAGATTTAATA+TGG | 0.318108 | 1.2:+15081630 | MS.gene026695:CDS |
AAGCATGGTTGCGATAGTTT+TGG | 0.320197 | 1.2:-15081706 | None:intergenic |
ATATGGGCCATGGGTAGGTT+AGG | 0.325129 | 1.2:+15081647 | MS.gene026695:CDS |
TTTGGATTTAGTCCCTTTGC+AGG | 0.325363 | 1.2:+15081412 | MS.gene026695:intron |
CATGGGTAGGTTAGGGTTTG+AGG | 0.343933 | 1.2:+15081655 | MS.gene026695:CDS |
CGCAGTTCGTCATTCCTTGT+TGG | 0.350817 | 1.2:-15081443 | None:intergenic |
ATTCTTGTCAAATTTCTAAT+GGG | 0.396632 | 1.2:-15081470 | None:intergenic |
ACTATCGCAACCATGCTTAT+GGG | 0.422034 | 1.2:+15081711 | MS.gene026695:CDS |
ATTTAGTCCCTTTGCAGGTA+GGG | 0.436276 | 1.2:+15081417 | MS.gene026695:intron |
TATGGGCCATGGGTAGGTTA+GGG | 0.451016 | 1.2:+15081648 | MS.gene026695:CDS |
GATGTGTGTGTCTGAATTCA+TGG | 0.465046 | 1.2:+15081553 | MS.gene026695:CDS |
GAGAGTCGAAAGATCATTAG+TGG | 0.473561 | 1.2:+15081614 | MS.gene026695:CDS |
GATTTAGTCCCTTTGCAGGT+AGG | 0.490896 | 1.2:+15081416 | MS.gene026695:intron |
TAGTGGTGAAGATTTAATAT+GGG | 0.494669 | 1.2:+15081631 | MS.gene026695:CDS |
GGGTTCAACAAGGATGGATC+AGG | 0.507582 | 1.2:+15081731 | MS.gene026695:CDS |
AATTGCATGCATATCAATGT+TGG | 0.519524 | 1.2:-15081781 | None:intergenic |
TTAGGGTTTGAGGACTATGT+TGG | 0.522305 | 1.2:+15081665 | MS.gene026695:CDS |
CGTTCATCACAATCAAGCTC+TGG | 0.531661 | 1.2:+15080055 | MS.gene026695:CDS |
TTGGACTCCCTACCTGCAAA+GGG | 0.534149 | 1.2:-15081424 | None:intergenic |
TGAAGATTTAATATGGGCCA+TGG | 0.535798 | 1.2:+15081637 | MS.gene026695:CDS |
AGTGGCTCGAGCAGTGGCAA+TGG | 0.552171 | 1.2:+15081758 | MS.gene026695:CDS |
GTTGGACTCCCTACCTGCAA+AGG | 0.560700 | 1.2:-15081425 | None:intergenic |
GCTTATGGGTTCAACAAGGA+TGG | 0.560755 | 1.2:+15081725 | MS.gene026695:CDS |
ATTTAATATGGGCCATGGGT+AGG | 0.572332 | 1.2:+15081642 | MS.gene026695:CDS |
TGAACGGTTGTTGTTAAATG+AGG | 0.576425 | 1.2:-15080038 | None:intergenic |
TCCTAAAGCAGTATGGAGCA+TGG | 0.581430 | 1.2:+15080010 | None:intergenic |
AAGGATGGATCAGGTGCTAG+TGG | 0.598209 | 1.2:+15081740 | MS.gene026695:CDS |
GGTGCTAGTGGCTCGAGCAG+TGG | 0.601799 | 1.2:+15081752 | MS.gene026695:CDS |
GAAGATTTAATATGGGCCAT+GGG | 0.602532 | 1.2:+15081638 | MS.gene026695:CDS |
CCTTGTTGAACCCATAAGCA+TGG | 0.602629 | 1.2:-15081721 | None:intergenic |
CTCAAACCCTAACCTACCCA+TGG | 0.607706 | 1.2:-15081654 | None:intergenic |
TGCAGGTAGGGAGTCCAACA+AGG | 0.616172 | 1.2:+15081429 | MS.gene026695:CDS |
CCATGCTTATGGGTTCAACA+AGG | 0.642059 | 1.2:+15081721 | MS.gene026695:CDS |
CAGAGCTTGATTGTGATGAA+CGG | 0.644080 | 1.2:-15080054 | None:intergenic |
ATGTGTGTGTCTGAATTCAT+GGG | 0.648992 | 1.2:+15081554 | MS.gene026695:CDS |
CATGGGCATCATCATCACTG+AGG | 0.744966 | 1.2:+15081571 | MS.gene026695:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATTAAATTAAAACATGTAA+TGG | - | chr1.2:15081298-15081317 | None:intergenic | 10.0% |
!!! | TTATTGTATTTAAAACTAAT+AGG | + | chr1.2:15080780-15080799 | MS.gene026695:intron | 10.0% |
!! | AGAGAGTAATTATATTTAAA+AGG | + | chr1.2:15080202-15080221 | MS.gene026695:intron | 15.0% |
!! | ATGCCAAAAAAAAAAAAATA+TGG | + | chr1.2:15080535-15080554 | MS.gene026695:intron | 15.0% |
!!! | GATCCATATTTTTTTTTTTT+TGG | - | chr1.2:15080541-15080560 | None:intergenic | 15.0% |
!!! | TGAATGAAATTTTGATTTAA+GGG | + | chr1.2:15080511-15080530 | MS.gene026695:intron | 15.0% |
!!! | TTGAATGAAATTTTGATTTA+AGG | + | chr1.2:15080510-15080529 | MS.gene026695:intron | 15.0% |
!! | AAAAAATTGAAATCTTAGCA+AGG | - | chr1.2:15080749-15080768 | None:intergenic | 20.0% |
!! | ATTCTTGTCAAATTTCTAAT+GGG | - | chr1.2:15081473-15081492 | None:intergenic | 20.0% |
!!! | AACAAAACTGAAGTATTTAA+AGG | - | chr1.2:15080917-15080936 | None:intergenic | 20.0% |
!!! | ACAAAACTGAAGTATTTAAA+GGG | - | chr1.2:15080916-15080935 | None:intergenic | 20.0% |
!!! | CTTTTCTTCTTTTTAATCTA+AGG | - | chr1.2:15081114-15081133 | None:intergenic | 20.0% |
!!! | GAAATTATACGTTACATTTT+TGG | + | chr1.2:15081133-15081152 | MS.gene026695:intron | 20.0% |
!!! | GAATGAAATTTTGATTTAAG+GGG | + | chr1.2:15080512-15080531 | MS.gene026695:intron | 20.0% |
!!! | TGTGTATATATTGTTTTGAA+TGG | + | chr1.2:15080290-15080309 | MS.gene026695:intron | 20.0% |
! | AAAAATATCTCAAGATGCTA+AGG | + | chr1.2:15081520-15081539 | MS.gene026695:CDS | 25.0% |
! | AATAAAAGTGAGAGAAAAGT+TGG | + | chr1.2:15080869-15080888 | MS.gene026695:intron | 25.0% |
! | AGAAAAGAAAGATCTAACTT+GGG | + | chr1.2:15080433-15080452 | MS.gene026695:intron | 25.0% |
! | ATAAAAGTGAGAGAAAAGTT+GGG | + | chr1.2:15080870-15080889 | MS.gene026695:intron | 25.0% |
! | GATTCTTGTCAAATTTCTAA+TGG | - | chr1.2:15081474-15081493 | None:intergenic | 25.0% |
! | GGGTGAAAAAAAATAAACAA+GGG | + | chr1.2:15080890-15080909 | MS.gene026695:intron | 25.0% |
! | TAGTGGTGAAGATTTAATAT+GGG | + | chr1.2:15081631-15081650 | MS.gene026695:CDS | 25.0% |
! | TGGGTGAAAAAAAATAAACA+AGG | + | chr1.2:15080889-15080908 | MS.gene026695:intron | 25.0% |
! | TTAGTGGTGAAGATTTAATA+TGG | + | chr1.2:15081630-15081649 | MS.gene026695:CDS | 25.0% |
!! | CTAAAAAAGATTTGAGATCT+TGG | + | chr1.2:15080674-15080693 | MS.gene026695:intron | 25.0% |
!! | GTGTGAGTGTTATAAATTTT+GGG | + | chr1.2:15080632-15080651 | MS.gene026695:intron | 25.0% |
!! | TGTGAGTGTTATAAATTTTG+GGG | + | chr1.2:15080633-15080652 | MS.gene026695:intron | 25.0% |
!! | TGTGTGAGTGTTATAAATTT+TGG | + | chr1.2:15080631-15080650 | MS.gene026695:intron | 25.0% |
!! | TTCTTCTTTTTAATCTAAGG+TGG | - | chr1.2:15081111-15081130 | None:intergenic | 25.0% |
!!! | TTGTTAACCATTTTTGACAT+GGG | + | chr1.2:15080473-15080492 | MS.gene026695:intron | 25.0% |
!!! | TTTTTAGTGTGAATCGAATT+CGG | - | chr1.2:15080661-15080680 | None:intergenic | 25.0% |
!!! | TTTTTTGTCTGTGTATATAC+TGG | - | chr1.2:15080980-15080999 | None:intergenic | 25.0% |
AAAGAGATAGAGGTCAAATA+TGG | - | chr1.2:15080564-15080583 | None:intergenic | 30.0% | |
AAATTGAGAGAAAGAGATAG+AGG | - | chr1.2:15080574-15080593 | None:intergenic | 30.0% | |
AAGAGATAGAGGTCAAATAT+GGG | - | chr1.2:15080563-15080582 | None:intergenic | 30.0% | |
AATCTAAGAGAAGCAGTTAA+GGG | - | chr1.2:15080393-15080412 | None:intergenic | 30.0% | |
ACCATTAGATAGATCAACAA+TGG | - | chr1.2:15080947-15080966 | None:intergenic | 30.0% | |
CAGAAAAGAAAGATCTAACT+TGG | + | chr1.2:15080432-15080451 | MS.gene026695:intron | 30.0% | |
TCCATTGTTGATCTATCTAA+TGG | + | chr1.2:15080943-15080962 | MS.gene026695:intron | 30.0% | |
! | CCTTCTTTTTATTGCATAGA+GGG | - | chr1.2:15081184-15081203 | None:intergenic | 30.0% |
! | CTTAACTATGTGCTTCTTTT+TGG | + | chr1.2:15081394-15081413 | MS.gene026695:intron | 30.0% |
! | GTATTTTCCCATGTCAAAAA+TGG | - | chr1.2:15080483-15080502 | None:intergenic | 30.0% |
! | TCCTTCTTTTTATTGCATAG+AGG | - | chr1.2:15081185-15081204 | None:intergenic | 30.0% |
!! | CTTGTTAACCATTTTTGACA+TGG | + | chr1.2:15080472-15080491 | MS.gene026695:intron | 30.0% |
ATCTAAGAGAAGCAGTTAAG+GGG | - | chr1.2:15080392-15080411 | None:intergenic | 35.0% | |
ATGTGTGTGTCTGAATTCAT+GGG | + | chr1.2:15081554-15081573 | MS.gene026695:CDS | 35.0% | |
CCCTCTATGCAATAAAAAGA+AGG | + | chr1.2:15081181-15081200 | MS.gene026695:intron | 35.0% | |
GAAGATTTAATATGGGCCAT+GGG | + | chr1.2:15081638-15081657 | MS.gene026695:CDS | 35.0% | |
GAATCTAAGAGAAGCAGTTA+AGG | - | chr1.2:15080394-15080413 | None:intergenic | 35.0% | |
TGAAGATTTAATATGGGCCA+TGG | + | chr1.2:15081637-15081656 | MS.gene026695:CDS | 35.0% | |
! | TGAACGGTTGTTGTTAAATG+AGG | - | chr1.2:15080041-15080060 | None:intergenic | 35.0% |
!! | TGAGATATTTTTGCGTACGA+TGG | - | chr1.2:15081512-15081531 | None:intergenic | 35.0% |
AACTATCGCAACCATGCTTA+TGG | + | chr1.2:15081710-15081729 | MS.gene026695:CDS | 40.0% | |
ACTATCGCAACCATGCTTAT+GGG | + | chr1.2:15081711-15081730 | MS.gene026695:CDS | 40.0% | |
ATTTAATATGGGCCATGGGT+AGG | + | chr1.2:15081642-15081661 | MS.gene026695:CDS | 40.0% | |
ATTTAGTCCCTTTGCAGGTA+GGG | + | chr1.2:15081417-15081436 | MS.gene026695:intron | 40.0% | |
CAGAGCTTGATTGTGATGAA+CGG | - | chr1.2:15080057-15080076 | None:intergenic | 40.0% | |
CTGCTTCTCTTAGATTCTCA+AGG | + | chr1.2:15080397-15080416 | MS.gene026695:intron | 40.0% | |
GAGAGTCGAAAGATCATTAG+TGG | + | chr1.2:15081614-15081633 | MS.gene026695:CDS | 40.0% | |
GATGTGTGTGTCTGAATTCA+TGG | + | chr1.2:15081553-15081572 | MS.gene026695:CDS | 40.0% | |
TTAGGGTTTGAGGACTATGT+TGG | + | chr1.2:15081665-15081684 | MS.gene026695:CDS | 40.0% | |
TTTGGATTTAGTCCCTTTGC+AGG | + | chr1.2:15081412-15081431 | MS.gene026695:intron | 40.0% | |
! | AAGCATGGTTGCGATAGTTT+TGG | - | chr1.2:15081709-15081728 | None:intergenic | 40.0% |
! | TGTAGTCACCTTTTACAAGC+TGG | + | chr1.2:15081081-15081100 | MS.gene026695:intron | 40.0% |
!! | TTTTGGAGGAGAACAGATAG+AGG | - | chr1.2:15081692-15081711 | None:intergenic | 40.0% |
CATGCATCACTTGACGTTAG+TGG | - | chr1.2:15081061-15081080 | None:intergenic | 45.0% | |
CCATGCTTATGGGTTCAACA+AGG | + | chr1.2:15081721-15081740 | MS.gene026695:CDS | 45.0% | |
CCTTGTTGAACCCATAAGCA+TGG | - | chr1.2:15081724-15081743 | None:intergenic | 45.0% | |
CGTTCATCACAATCAAGCTC+TGG | + | chr1.2:15080055-15080074 | MS.gene026695:CDS | 45.0% | |
GAGCAGATCTGCGTATACAA+TGG | + | chr1.2:15080712-15080731 | MS.gene026695:intron | 45.0% | |
GATTTAGTCCCTTTGCAGGT+AGG | + | chr1.2:15081416-15081435 | MS.gene026695:intron | 45.0% | |
GCTTATGGGTTCAACAAGGA+TGG | + | chr1.2:15081725-15081744 | MS.gene026695:CDS | 45.0% | |
GTGGCAAACCAGCTTGTAAA+AGG | - | chr1.2:15081092-15081111 | None:intergenic | 45.0% | |
!!! | CATGGTTGCGATAGTTTTGG+AGG | - | chr1.2:15081706-15081725 | None:intergenic | 45.0% |
!! | TTATAATAATAAATTAATCA+AGG | + | chr1.2:15080815-15080834 | MS.gene026695:intron | 5.0% |
!!! | TTTTATTGAAAATAATTTTA+AGG | - | chr1.2:15081324-15081343 | None:intergenic | 5.0% |
AAGGATGGATCAGGTGCTAG+TGG | + | chr1.2:15081740-15081759 | MS.gene026695:CDS | 50.0% | |
ATATGGGCCATGGGTAGGTT+AGG | + | chr1.2:15081647-15081666 | MS.gene026695:CDS | 50.0% | |
CATGGGCATCATCATCACTG+AGG | + | chr1.2:15081571-15081590 | MS.gene026695:CDS | 50.0% | |
CATGGGTAGGTTAGGGTTTG+AGG | + | chr1.2:15081655-15081674 | MS.gene026695:CDS | 50.0% | |
CGCAGTTCGTCATTCCTTGT+TGG | - | chr1.2:15081446-15081465 | None:intergenic | 50.0% | |
CTCAAACCCTAACCTACCCA+TGG | - | chr1.2:15081657-15081676 | None:intergenic | 50.0% | |
GGGTTCAACAAGGATGGATC+AGG | + | chr1.2:15081731-15081750 | MS.gene026695:CDS | 50.0% | |
TATGGGCCATGGGTAGGTTA+GGG | + | chr1.2:15081648-15081667 | MS.gene026695:CDS | 50.0% | |
TTGGACTCCCTACCTGCAAA+GGG | - | chr1.2:15081427-15081446 | None:intergenic | 50.0% | |
GTTGGACTCCCTACCTGCAA+AGG | - | chr1.2:15081428-15081447 | None:intergenic | 55.0% | |
TGCAGGTAGGGAGTCCAACA+AGG | + | chr1.2:15081429-15081448 | MS.gene026695:CDS | 55.0% | |
AGTGGCTCGAGCAGTGGCAA+TGG | + | chr1.2:15081758-15081777 | MS.gene026695:CDS | 60.0% | |
GGTGCTAGTGGCTCGAGCAG+TGG | + | chr1.2:15081752-15081771 | MS.gene026695:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.2 | gene | 15080022 | 15081790 | 15080022 | ID=MS.gene026695 |
chr1.2 | mRNA | 15080022 | 15081790 | 15080022 | ID=MS.gene026695.t1;Parent=MS.gene026695 |
chr1.2 | exon | 15080022 | 15080076 | 15080022 | ID=MS.gene026695.t1.exon1;Parent=MS.gene026695.t1 |
chr1.2 | CDS | 15080022 | 15080076 | 15080022 | ID=cds.MS.gene026695.t1;Parent=MS.gene026695.t1 |
chr1.2 | exon | 15081423 | 15081790 | 15081423 | ID=MS.gene026695.t1.exon2;Parent=MS.gene026695.t1 |
chr1.2 | CDS | 15081423 | 15081790 | 15081423 | ID=cds.MS.gene026695.t1;Parent=MS.gene026695.t1 |
Gene Sequence |
Protein sequence |