AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene02673

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene02673.t1 MTR_3g090430 97.697 304 6 1 1 303 29 332 0.0 611
MS.gene02673.t1 MTR_1g056810 54.483 145 43 5 13 137 3 144 3.62e-43 149
MS.gene02673.t1 MTR_2g093220 75.000 72 18 0 6 77 23 94 7.84e-33 122
MS.gene02673.t1 MTR_3g091820 79.688 64 13 0 14 77 34 97 8.12e-32 120
MS.gene02673.t1 MTR_4g461080 74.648 71 18 0 5 75 11 81 8.90e-31 117
MS.gene02673.t1 MTR_2g096740 53.061 98 45 1 4 101 58 154 3.12e-30 116
MS.gene02673.t1 MTR_2g096740 53.061 98 45 1 4 101 43 139 4.53e-30 115
MS.gene02673.t1 MTR_4g088580 85.455 55 8 0 25 79 57 111 7.22e-30 117
MS.gene02673.t1 MTR_8g027295 76.562 64 13 1 14 77 17 78 1.14e-29 114
MS.gene02673.t1 MTR_8g479350 76.667 60 14 0 25 84 70 129 6.26e-29 113
MS.gene02673.t1 MTR_4g022370 68.116 69 22 0 9 77 68 136 6.50e-29 114
MS.gene02673.t1 MTR_7g059400 68.116 69 22 0 9 77 62 130 7.08e-29 113
MS.gene02673.t1 MTR_7g024670 74.242 66 14 1 22 84 76 141 7.99e-29 114
MS.gene02673.t1 MTR_1g077600 37.576 165 90 3 2 157 14 174 1.38e-28 111
MS.gene02673.t1 MTR_1g077600 37.576 165 90 3 2 157 14 174 1.46e-28 111
MS.gene02673.t1 MTR_4g063780 66.667 69 23 0 9 77 61 129 1.77e-28 112
MS.gene02673.t1 MTR_8g068210 66.667 69 23 0 11 79 20 88 2.57e-28 112
MS.gene02673.t1 MTR_3g077750 73.333 60 16 0 14 73 52 111 3.24e-28 111
MS.gene02673.t1 MTR_2g014060 86.000 50 7 0 25 74 27 76 2.56e-27 108
MS.gene02673.t1 MTR_5g031440 85.714 49 7 0 25 73 45 93 7.17e-27 107
MS.gene02673.t1 MTR_4g109980 87.755 49 6 0 25 73 42 90 2.40e-26 106
MS.gene02673.t1 MTR_8g079060 56.962 79 34 0 25 103 31 109 7.53e-26 102
MS.gene02673.t1 MTR_8g015840 82.000 50 9 0 25 74 22 71 1.05e-25 102
MS.gene02673.t1 MTR_4g089095 76.786 56 12 1 24 79 51 105 1.15e-25 103
MS.gene02673.t1 MTR_2g059540 82.353 51 9 0 21 71 29 79 1.40e-25 101
MS.gene02673.t1 MTR_4g089095 76.786 56 12 1 24 79 17 71 1.51e-25 102
MS.gene02673.t1 MTR_2g014170 84.000 50 8 0 22 71 44 93 1.97e-25 103
MS.gene02673.t1 MTR_2g013370 74.138 58 14 1 22 79 45 101 2.00e-25 102
MS.gene02673.t1 MTR_3g435480 73.077 52 14 0 25 76 138 189 4.38e-24 102
MS.gene02673.t1 MTR_7g010950 68.421 57 17 1 20 76 133 188 6.65e-23 98.6
MS.gene02673.t1 MTR_6g012450 71.154 52 15 0 25 76 138 189 9.24e-23 98.2
MS.gene02673.t1 MTR_4g082060 59.155 71 27 2 6 76 107 175 3.11e-22 96.7
MS.gene02673.t1 MTR_2g016030 65.517 58 20 0 19 76 43 100 3.61e-22 91.3
MS.gene02673.t1 MTR_5g041420 54.795 73 31 2 4 76 121 191 4.59e-22 94.4
MS.gene02673.t1 MTR_6g027450 52.000 75 34 1 3 77 71 143 1.98e-21 92.8
MS.gene02673.t1 MTR_7g086780 67.308 52 17 0 25 76 101 152 2.26e-21 94.0
MS.gene02673.t1 MTR_8g044220 64.151 53 19 0 25 77 120 172 2.27e-21 94.0
MS.gene02673.t1 MTR_6g027460 52.703 74 33 1 3 76 78 149 3.24e-21 92.8
MS.gene02673.t1 MTR_5g041530 63.333 60 21 1 21 80 139 197 1.12e-20 91.3
MS.gene02673.t1 MTR_5g041400 55.714 70 24 1 7 76 110 172 3.93e-20 89.7
MS.gene02673.t1 MTR_5g041380 62.712 59 18 1 22 76 122 180 9.80e-20 88.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene02673.t1 AT3G52440 61.864 118 31 3 15 127 13 121 2.16e-43 149
MS.gene02673.t1 AT3G52440 61.864 118 31 3 15 127 32 140 3.26e-43 149
MS.gene02673.t1 AT1G21340 43.458 214 97 9 14 215 25 226 9.60e-40 140
MS.gene02673.t1 AT5G60200 50.407 123 59 1 20 140 52 174 2.26e-35 128
MS.gene02673.t1 AT4G24060 78.125 64 14 0 14 77 44 107 1.92e-31 120
MS.gene02673.t1 AT2G28510 87.500 56 7 0 22 77 47 102 3.78e-31 118
MS.gene02673.t1 AT3G61850 76.562 64 13 1 14 77 55 116 1.64e-30 116
MS.gene02673.t1 AT3G61850 76.562 64 13 1 14 77 55 116 1.64e-30 116
MS.gene02673.t1 AT3G61850 76.562 64 13 1 14 77 67 128 2.13e-30 116
MS.gene02673.t1 AT3G61850 76.562 64 13 1 14 77 55 116 2.42e-30 116
MS.gene02673.t1 AT3G61850 76.562 64 13 1 14 77 67 128 3.44e-30 116
MS.gene02673.t1 AT2G37590 78.333 60 13 0 20 79 86 145 4.04e-30 116
MS.gene02673.t1 AT3G55370 75.000 64 16 0 17 80 70 133 9.03e-30 116
MS.gene02673.t1 AT3G55370 75.000 64 16 0 17 80 70 133 9.19e-30 115
MS.gene02673.t1 AT3G55370 75.000 64 16 0 17 80 115 178 1.13e-29 116
MS.gene02673.t1 AT1G07640 82.143 56 9 1 25 79 79 134 1.89e-29 114
MS.gene02673.t1 AT1G07640 82.143 56 9 1 25 79 87 142 2.48e-29 114
MS.gene02673.t1 AT1G07640 82.143 56 9 1 25 79 23 78 2.51e-29 113
MS.gene02673.t1 AT3G45610 50.467 107 47 3 25 126 42 147 6.46e-29 111
MS.gene02673.t1 AT5G02460 73.770 61 16 0 17 77 89 149 1.40e-28 113
MS.gene02673.t1 AT4G21050 57.831 83 35 0 25 107 26 108 2.02e-28 108
MS.gene02673.t1 AT5G60850 82.143 56 10 0 25 80 53 108 2.40e-28 111
MS.gene02673.t1 AT4G00940 85.185 54 8 0 24 77 69 122 3.11e-28 110
MS.gene02673.t1 AT4G00940 85.185 54 8 0 24 77 69 122 3.11e-28 110
MS.gene02673.t1 AT4G00940 85.185 54 8 0 24 77 69 122 3.11e-28 110
MS.gene02673.t1 AT5G65590 81.132 53 10 0 25 77 43 95 3.41e-28 111
MS.gene02673.t1 AT2G28810 76.364 55 13 0 20 74 74 128 9.72e-28 110
MS.gene02673.t1 AT1G28310 81.818 55 10 0 25 79 29 83 1.24e-27 109
MS.gene02673.t1 AT2G28810 76.364 55 13 0 20 74 91 145 1.49e-27 109
MS.gene02673.t1 AT1G28310 81.818 55 10 0 25 79 53 107 1.75e-27 109
MS.gene02673.t1 AT5G62940 71.212 66 18 1 8 73 59 123 2.33e-27 110
MS.gene02673.t1 AT1G51700 56.471 85 31 2 25 103 35 119 5.42e-27 104
MS.gene02673.t1 AT2G46590 78.947 57 10 1 14 70 61 115 5.45e-27 108
MS.gene02673.t1 AT2G46590 91.489 47 4 0 24 70 81 127 6.47e-27 108
MS.gene02673.t1 AT3G21270 86.275 51 7 0 25 75 31 81 7.70e-27 104
MS.gene02673.t1 AT1G64620 77.586 58 13 0 14 71 40 97 1.82e-26 107
MS.gene02673.t1 AT3G50410 77.358 53 12 0 25 77 32 84 2.46e-25 102
MS.gene02673.t1 AT4G38000 66.129 62 21 0 12 73 30 91 1.57e-24 99.8
MS.gene02673.t1 AT5G66940 70.370 54 16 0 24 77 33 86 8.72e-24 97.1
MS.gene02673.t1 AT1G69570 64.706 68 22 1 9 76 120 185 8.76e-24 100
MS.gene02673.t1 AT2G34140 71.154 52 15 0 25 76 60 111 3.87e-23 94.0
MS.gene02673.t1 AT1G29160 68.421 57 17 1 20 76 60 115 4.43e-23 94.0
MS.gene02673.t1 AT1G47655 78.723 47 10 0 25 71 31 77 6.13e-23 94.7
MS.gene02673.t1 AT3G47500 71.154 52 15 0 25 76 112 163 7.18e-23 98.2
MS.gene02673.t1 AT4G21040 75.000 52 13 0 25 76 27 78 7.94e-23 94.7
MS.gene02673.t1 AT1G26790 57.746 71 29 1 6 76 95 164 1.66e-22 96.7
MS.gene02673.t1 AT5G62430 54.930 71 31 1 6 76 38 107 5.17e-22 94.0
MS.gene02673.t1 AT4G21080 71.154 52 15 0 25 76 27 78 9.73e-22 92.4
MS.gene02673.t1 AT5G39660 65.079 63 21 1 14 76 130 191 1.05e-21 95.1
MS.gene02673.t1 AT5G39660 65.079 63 21 1 14 76 130 191 1.05e-21 95.1
MS.gene02673.t1 AT5G39660 65.079 63 21 1 14 76 130 191 1.05e-21 95.1
MS.gene02673.t1 AT4G21030 43.373 83 47 0 25 107 23 105 1.67e-15 73.9

Find 73 sgRNAs with CRISPR-Local

Find 80 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGATGAGGTTCATAATTA+TGG 0.189418 3.1:-72568101 MS.gene02673:CDS
GATGAGTGCTATTTGGATTT+TGG 0.207106 3.1:+72568264 None:intergenic
GACCGTCTTTCCGCGAATTA+TGG 0.208626 3.1:-72568374 MS.gene02673:CDS
TCAACATGATGAGTGCTATT+TGG 0.209784 3.1:+72568257 None:intergenic
ATTATTGTAGTAACAGAATT+TGG 0.230505 3.1:+72568535 None:intergenic
GCAAAGGTTGTAGACGTTAT+TGG 0.239568 3.1:-72568484 MS.gene02673:CDS
TTCTCCGTTTCAACGCTTTC+GGG 0.242314 3.1:+72568152 None:intergenic
TAAGTGAAAGTTGGAATTCT+TGG 0.244522 3.1:-72567797 MS.gene02673:CDS
ATTCTCCGTTTCAACGCTTT+CGG 0.269550 3.1:+72568151 None:intergenic
GATCAGTTTGAAGGGTTTCT+AGG 0.272563 3.1:-72568041 MS.gene02673:CDS
TAAATTGACACTAGTAGAAT+TGG 0.302955 3.1:+72567821 None:intergenic
GGTAATTCCATTTGTATCAT+TGG 0.309748 3.1:+72567915 None:intergenic
ATTTGTCCATTGAGGTTGTT+TGG 0.335075 3.1:+72568624 None:intergenic
GAAGCACAACGAGGACAATT+AGG 0.359511 3.1:+72568566 None:intergenic
TCATCATGTTGATGAGGAAT+TGG 0.377823 3.1:-72568246 MS.gene02673:CDS
GAGAGCGAGGCTAATAATAA+TGG 0.378005 3.1:-72568218 MS.gene02673:CDS
TTGTTGCCATGTATAATTAT+TGG 0.378408 3.1:+72567944 None:intergenic
TATCACGCGAACCATTGTTT+TGG 0.390102 3.1:+72568321 None:intergenic
AAGTGAAAGTTGGAATTCTT+GGG 0.392557 3.1:-72567796 MS.gene02673:CDS
TGACAAATTGTTGATATTGT+TGG 0.392892 3.1:+72568181 None:intergenic
TCAATTTAATAAGTGAAAGT+TGG 0.399372 3.1:-72567806 MS.gene02673:CDS
ATGTGGTACAAGATGTTCTA+TGG 0.409257 3.1:-72568007 MS.gene02673:CDS
TTGCGGCAGCCACCGCCAAC+GGG 0.427583 3.1:+72568434 None:intergenic
ATTGAATATGATCAGTTTGA+AGG 0.427963 3.1:-72568050 MS.gene02673:CDS
CATCAAAAGGTTTCTGAGGC+TGG 0.436350 3.1:+72568117 None:intergenic
ATTACCAGGAGAGTTGGAAT+TGG 0.443432 3.1:-72567898 MS.gene02673:CDS
GGACCAAAGGTGGCTCTCTT+CGG 0.446025 3.1:-72568463 MS.gene02673:CDS
TCCATTGAGGTTGTTTGGAA+TGG 0.451068 3.1:+72568629 None:intergenic
ACCACCACCAATGATACAAA+TGG 0.457520 3.1:-72567922 MS.gene02673:CDS
CTTCGGAATGTTCCCGTTGG+CGG 0.470284 3.1:-72568446 MS.gene02673:CDS
TAATTATGAACCTCATCAAA+AGG 0.476723 3.1:+72568104 None:intergenic
CGGAATGTTCCCGTTGGCGG+TGG 0.477735 3.1:-72568443 MS.gene02673:CDS
GTACCATTCTCATTATTCAA+TGG 0.481490 3.1:+72567852 None:intergenic
TTTGCGGCAGCCACCGCCAA+CGG 0.485880 3.1:+72568433 None:intergenic
ATTCCGAAGAGAGCCACCTT+TGG 0.486871 3.1:+72568460 None:intergenic
ATATTCATAGCATTAGAATC+AGG 0.491964 3.1:+72567984 None:intergenic
TCCATTTGTATCATTGGTGG+TGG 0.492349 3.1:+72567921 None:intergenic
CTTCTTCCAATAATTATACA+TGG 0.509902 3.1:-72567950 MS.gene02673:CDS
TTGAATATGATCAGTTTGAA+GGG 0.510238 3.1:-72568049 MS.gene02673:CDS
GATGAGGTTCATAATTATGG+AGG 0.510864 3.1:-72568098 MS.gene02673:CDS
AATGGAATTACCAGGAGAGT+TGG 0.513056 3.1:-72567904 MS.gene02673:CDS
TGAATTTGATTTGTCCATTG+AGG 0.513430 3.1:+72568616 None:intergenic
GACACCCGAAAGCGTTGAAA+CGG 0.518206 3.1:-72568156 MS.gene02673:CDS
AATTCCATTTGTATCATTGG+TGG 0.522083 3.1:+72567918 None:intergenic
GCCATTCCAAACAACCTCAA+TGG 0.522451 3.1:-72568630 MS.gene02673:CDS
ATCAGCAGAGCCATAATTCG+CGG 0.525005 3.1:+72568364 None:intergenic
TTGCCATTGAATAATGAGAA+TGG 0.531446 3.1:-72567855 MS.gene02673:CDS
TTCTGACCGCCTTTCCACGA+CGG 0.537387 3.1:+72568408 None:intergenic
TATTCCAATTCCAACTCTCC+TGG 0.541184 3.1:+72567894 None:intergenic
TTCTCATTATTCAATGGCAA+TGG 0.542279 3.1:+72567858 None:intergenic
GAACATGAATTGAGTTTGAG+TGG 0.542405 3.1:-72568074 MS.gene02673:CDS
ATGAGGTTCATAATTATGGA+GGG 0.547185 3.1:-72568097 MS.gene02673:CDS
AACATGAATTGAGTTTGAGT+GGG 0.550139 3.1:-72568073 MS.gene02673:CDS
TCTCTTCGGAATGTTCCCGT+TGG 0.557776 3.1:-72568449 MS.gene02673:CDS
AGCCATAATTCGCGGAAAGA+CGG 0.562712 3.1:+72568372 None:intergenic
TTATTCAATGGCAATGGCAA+TGG 0.570708 3.1:+72567864 None:intergenic
ACCTCATCAAAAGGTTTCTG+AGG 0.573056 3.1:+72568113 None:intergenic
CAACCACGGTATTTCTGCAA+AGG 0.575852 3.1:-72568500 MS.gene02673:CDS
TGTAGACGTTATTGGACCAA+AGG 0.588786 3.1:-72568476 MS.gene02673:CDS
TGGACAAATCAAATTCAAAG+TGG 0.607924 3.1:-72568610 MS.gene02673:CDS
AGACGTTATTGGACCAAAGG+TGG 0.608980 3.1:-72568473 MS.gene02673:CDS
TAGCACTCATCATGTTGATG+AGG 0.614970 3.1:-72568252 MS.gene02673:CDS
TGAGGTTCATAATTATGGAG+GGG 0.616763 3.1:-72568096 MS.gene02673:CDS
TCTAGGTGTTGATGAAGATG+TGG 0.622739 3.1:-72568024 MS.gene02673:CDS
TTAGGAGCTATCTCAATGTG+TGG 0.628107 3.1:+72568584 None:intergenic
GGAATTGGAAATTGAGAGCG+AGG 0.633302 3.1:-72568231 MS.gene02673:CDS
CATCAGCAAAACCAAAACAA+TGG 0.640773 3.1:-72568332 MS.gene02673:CDS
ATGATACAAATGGAATTACC+AGG 0.647801 3.1:-72567912 MS.gene02673:CDS
TGAAACGGAGAATGATGCAG+TGG 0.672585 3.1:-72568141 MS.gene02673:CDS
CAACCTTTGCAGAAATACCG+TGG 0.687599 3.1:+72568497 None:intergenic
TGGTTCGCGTGATATAGACA+TGG 0.703930 3.1:-72568312 MS.gene02673:CDS
ATTATAGCTTGTCACAACCA+CGG 0.706519 3.1:-72568514 MS.gene02673:CDS
GTGTTTGATGAAGCACAACG+AGG 0.730421 3.1:+72568557 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATTGTAGTAACAGAATT+TGG + chr3.1:72567843-72567862 None:intergenic 20.0%
!! TCAATTTAATAAGTGAAAGT+TGG - chr3.1:72568569-72568588 MS.gene02673:CDS 20.0%
! ATATTCATAGCATTAGAATC+AGG + chr3.1:72568394-72568413 None:intergenic 25.0%
! ATTGAATATGATCAGTTTGA+AGG - chr3.1:72568325-72568344 MS.gene02673:CDS 25.0%
! CTTCTTCCAATAATTATACA+TGG - chr3.1:72568425-72568444 MS.gene02673:CDS 25.0%
! TAAATTGACACTAGTAGAAT+TGG + chr3.1:72568557-72568576 None:intergenic 25.0%
! TAATTATGAACCTCATCAAA+AGG + chr3.1:72568274-72568293 None:intergenic 25.0%
! TGACAAATTGTTGATATTGT+TGG + chr3.1:72568197-72568216 None:intergenic 25.0%
! TTGAATATGATCAGTTTGAA+GGG - chr3.1:72568326-72568345 MS.gene02673:CDS 25.0%
! TTGTTGCCATGTATAATTAT+TGG + chr3.1:72568434-72568453 None:intergenic 25.0%
! TTTGATGAGGTTCATAATTA+TGG - chr3.1:72568274-72568293 MS.gene02673:CDS 25.0%
!! TTCTTTTGATCTTTCAACTA+TGG - chr3.1:72568603-72568622 MS.gene02673:CDS 25.0%
!!! TGGATTTTGGTTTAAGAATT+TGG + chr3.1:72568101-72568120 None:intergenic 25.0%
AACATGAATTGAGTTTGAGT+GGG - chr3.1:72568302-72568321 MS.gene02673:CDS 30.0%
AAGTGAAAGTTGGAATTCTT+GGG - chr3.1:72568579-72568598 MS.gene02673:CDS 30.0%
AATTCCATTTGTATCATTGG+TGG + chr3.1:72568460-72568479 None:intergenic 30.0%
ATGAGGTTCATAATTATGGA+GGG - chr3.1:72568278-72568297 MS.gene02673:CDS 30.0%
ATGATACAAATGGAATTACC+AGG - chr3.1:72568463-72568482 MS.gene02673:CDS 30.0%
GGTAATTCCATTTGTATCAT+TGG + chr3.1:72568463-72568482 None:intergenic 30.0%
GTACCATTCTCATTATTCAA+TGG + chr3.1:72568526-72568545 None:intergenic 30.0%
TAAGTGAAAGTTGGAATTCT+TGG - chr3.1:72568578-72568597 MS.gene02673:CDS 30.0%
TGGACAAATCAAATTCAAAG+TGG - chr3.1:72567765-72567784 MS.gene02673:CDS 30.0%
TTCTCATTATTCAATGGCAA+TGG + chr3.1:72568520-72568539 None:intergenic 30.0%
TTGCCATTGAATAATGAGAA+TGG - chr3.1:72568520-72568539 MS.gene02673:CDS 30.0%
!! TGAATTTGATTTGTCCATTG+AGG + chr3.1:72567762-72567781 None:intergenic 30.0%
ATGTGGTACAAGATGTTCTA+TGG - chr3.1:72568368-72568387 MS.gene02673:CDS 35.0%
ATTTGTCCATTGAGGTTGTT+TGG + chr3.1:72567754-72567773 None:intergenic 35.0%
CATCAGCAAAACCAAAACAA+TGG - chr3.1:72568043-72568062 MS.gene02673:CDS 35.0%
GAACATGAATTGAGTTTGAG+TGG - chr3.1:72568301-72568320 MS.gene02673:CDS 35.0%
GATGAGGTTCATAATTATGG+AGG - chr3.1:72568277-72568296 MS.gene02673:CDS 35.0%
TGAGGTTCATAATTATGGAG+GGG - chr3.1:72568279-72568298 MS.gene02673:CDS 35.0%
TTATTCAATGGCAATGGCAA+TGG + chr3.1:72568514-72568533 None:intergenic 35.0%
! ATTATAGCTTGTCACAACCA+CGG - chr3.1:72567861-72567880 MS.gene02673:CDS 35.0%
! TCAACATGATGAGTGCTATT+TGG + chr3.1:72568121-72568140 None:intergenic 35.0%
! TCATCATGTTGATGAGGAAT+TGG - chr3.1:72568129-72568148 MS.gene02673:CDS 35.0%
!!! GATGAGTGCTATTTGGATTT+TGG + chr3.1:72568114-72568133 None:intergenic 35.0%
AATGGAATTACCAGGAGAGT+TGG - chr3.1:72568471-72568490 MS.gene02673:CDS 40.0%
ACCACCACCAATGATACAAA+TGG - chr3.1:72568453-72568472 MS.gene02673:CDS 40.0%
ACCTCATCAAAAGGTTTCTG+AGG + chr3.1:72568265-72568284 None:intergenic 40.0%
ATTACCAGGAGAGTTGGAAT+TGG - chr3.1:72568477-72568496 MS.gene02673:CDS 40.0%
ATTCTCCGTTTCAACGCTTT+CGG + chr3.1:72568227-72568246 None:intergenic 40.0%
GAGAGCGAGGCTAATAATAA+TGG - chr3.1:72568157-72568176 MS.gene02673:CDS 40.0%
GATCAGTTTGAAGGGTTTCT+AGG - chr3.1:72568334-72568353 MS.gene02673:CDS 40.0%
GCAAAGGTTGTAGACGTTAT+TGG - chr3.1:72567891-72567910 MS.gene02673:CDS 40.0%
TAGCACTCATCATGTTGATG+AGG - chr3.1:72568123-72568142 MS.gene02673:CDS 40.0%
TATTCCAATTCCAACTCTCC+TGG + chr3.1:72568484-72568503 None:intergenic 40.0%
TCCATTGAGGTTGTTTGGAA+TGG + chr3.1:72567749-72567768 None:intergenic 40.0%
TCCATTTGTATCATTGGTGG+TGG + chr3.1:72568457-72568476 None:intergenic 40.0%
TGTAGACGTTATTGGACCAA+AGG - chr3.1:72567899-72567918 MS.gene02673:CDS 40.0%
TTAGGAGCTATCTCAATGTG+TGG + chr3.1:72567794-72567813 None:intergenic 40.0%
! TATCACGCGAACCATTGTTT+TGG + chr3.1:72568057-72568076 None:intergenic 40.0%
!! TCTAGGTGTTGATGAAGATG+TGG - chr3.1:72568351-72568370 MS.gene02673:CDS 40.0%
AGACGTTATTGGACCAAAGG+TGG - chr3.1:72567902-72567921 MS.gene02673:CDS 45.0%
AGCCATAATTCGCGGAAAGA+CGG + chr3.1:72568006-72568025 None:intergenic 45.0%
ATCAGCAGAGCCATAATTCG+CGG + chr3.1:72568014-72568033 None:intergenic 45.0%
CAACCTTTGCAGAAATACCG+TGG + chr3.1:72567881-72567900 None:intergenic 45.0%
GAAGCACAACGAGGACAATT+AGG + chr3.1:72567812-72567831 None:intergenic 45.0%
GCCATTCCAAACAACCTCAA+TGG - chr3.1:72567745-72567764 MS.gene02673:CDS 45.0%
GGAATTGGAAATTGAGAGCG+AGG - chr3.1:72568144-72568163 MS.gene02673:CDS 45.0%
GTGTTTGATGAAGCACAACG+AGG + chr3.1:72567821-72567840 None:intergenic 45.0%
TGAAACGGAGAATGATGCAG+TGG - chr3.1:72568234-72568253 MS.gene02673:CDS 45.0%
TGGTTCGCGTGATATAGACA+TGG - chr3.1:72568063-72568082 MS.gene02673:CDS 45.0%
TTCTCCGTTTCAACGCTTTC+GGG + chr3.1:72568226-72568245 None:intergenic 45.0%
! CAACCACGGTATTTCTGCAA+AGG - chr3.1:72567875-72567894 MS.gene02673:CDS 45.0%
! GCCTCAGAAACCTTTTGATG+AGG - chr3.1:72568261-72568280 MS.gene02673:CDS 45.0%
!! CATCAAAAGGTTTCTGAGGC+TGG + chr3.1:72568261-72568280 None:intergenic 45.0%
ATTCCGAAGAGAGCCACCTT+TGG + chr3.1:72567918-72567937 None:intergenic 50.0%
CAAAAACCGTCGTGGAAAGG+CGG - chr3.1:72567961-72567980 MS.gene02673:CDS 50.0%
GACCGTCTTTCCGCGAATTA+TGG - chr3.1:72568001-72568020 MS.gene02673:CDS 50.0%
TCTCTTCGGAATGTTCCCGT+TGG - chr3.1:72567926-72567945 MS.gene02673:CDS 50.0%
! CCTTTCCACGACGGTTTTTG+CGG + chr3.1:72567961-72567980 None:intergenic 50.0%
!! GACACCCGAAAGCGTTGAAA+CGG - chr3.1:72568219-72568238 MS.gene02673:CDS 50.0%
CCGCAAAAACCGTCGTGGAA+AGG - chr3.1:72567958-72567977 MS.gene02673:CDS 55.0%
CTTCGGAATGTTCCCGTTGG+CGG - chr3.1:72567929-72567948 MS.gene02673:CDS 55.0%
GGACCAAAGGTGGCTCTCTT+CGG - chr3.1:72567912-72567931 MS.gene02673:CDS 55.0%
TTCTGACCGCCTTTCCACGA+CGG + chr3.1:72567970-72567989 None:intergenic 55.0%
CGGAATGTTCCCGTTGGCGG+TGG - chr3.1:72567932-72567951 MS.gene02673:CDS 65.0%
GGCTGCCGCAAAAACCGTCG+TGG - chr3.1:72567953-72567972 MS.gene02673:CDS 65.0%
TTTGCGGCAGCCACCGCCAA+CGG + chr3.1:72567945-72567964 None:intergenic 65.0%
TTGCGGCAGCCACCGCCAAC+GGG + chr3.1:72567944-72567963 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 72567743 72568654 72567743 ID=MS.gene02673
chr3.1 mRNA 72567743 72568654 72567743 ID=MS.gene02673.t1;Parent=MS.gene02673
chr3.1 exon 72567743 72568654 72567743 ID=MS.gene02673.t1.exon1;Parent=MS.gene02673.t1
chr3.1 CDS 72567743 72568654 72567743 ID=cds.MS.gene02673.t1;Parent=MS.gene02673.t1
Gene Sequence

>MS.gene02673

ATGCCATTCCAAACAACCTCAATGGACAAATCAAATTCAAAGTGGAAACCACACATTGAGATAGCTCCTAATTGTCCTCGTTGTGCTTCATCAAACACCAAATTCTGTTACTACAATAATTATAGCTTGTCACAACCACGGTATTTCTGCAAAGGTTGTAGACGTTATTGGACCAAAGGTGGCTCTCTTCGGAATGTTCCCGTTGGCGGTGGCTGCCGCAAAAACCGTCGTGGAAAGGCGGTCAGAAATTCTCAAACTGACCGTCTTTCCGCGAATTATGGCTCTGCTGATGATGAAGATCATCAGCAAAACCAAAACAATGGTTCGCGTGATATAGACATGGCTGTTGTTTTTGCCAAATTCTTAAACCAAAATCCAAATAGCACTCATCATGTTGATGAGGAATTGGAAATTGAGAGCGAGGCTAATAATAATGGTTTGTCTTCTTCTTCCAACAATATCAACAATTTGTCATCGACACCCGAAAGCGTTGAAACGGAGAATGATGCAGTGGTCCAGCCTCAGAAACCTTTTGATGAGGTTCATAATTATGGAGGGGAACATGAATTGAGTTTGAGTGGGATTGAATATGATCAGTTTGAAGGGTTTCTAGGTGTTGATGAAGATGTGGTACAAGATGTTCTATGGCCTGATTCTAATGCTATGAATATGATGATGTCATCTTCTTCCAATAATTATACATGGCAACAACCACCACCAATGATACAAATGGAATTACCAGGAGAGTTGGAATTGGAATACTCAATGCCATTGCCATTGCCATTGAATAATGAGAATGGTACTATTAATTCCAATTCTACTAGTGTCAATTTAATAAGTGAAAGTTGGAATTCTTGGGATTCTTTTGATCTTTCAACTATGGAAGTCTTCTCTTCAAGTTCAAGACCTTAA
Protein sequence

>MS.gene02673.t1

MPFQTTSMDKSNSKWKPHIEIAPNCPRCASSNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRRGKAVRNSQTDRLSANYGSADDEDHQQNQNNGSRDIDMAVVFAKFLNQNPNSTHHVDEELEIESEANNNGLSSSSNNINNLSSTPESVETENDAVVQPQKPFDEVHNYGGEHELSLSGIEYDQFEGFLGVDEDVVQDVLWPDSNAMNMMMSSSSNNYTWQQPPPMIQMELPGELELEYSMPLPLPLNNENGTINSNSTSVNLISESWNSWDSFDLSTMEVFSSSSRP