AlfalfaGEDB | MS.gene026747

M. sativa cultivar XinJiangDaYe / MS.gene026747

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene026747.t1	ACU17795.1	79	119	25	0	1	119	138	256	4.00E-48	200.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene026747.t1	Q9LS95	49.2	122	61	1	1	122	436	556	1.3e-31	137.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene026747.t1	I1KVF8	79.0	119	25	0	1	119	138	256	2.9e-48	200.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene026747.t1	MTR_2g103950	75.207	121	30	0	1	121	141	261	1.29e-62	195
MS.gene026747.t1	MTR_4g129010	66.667	120	40	0	1	120	143	262	3.20e-54	174
MS.gene026747.t1	MTR_1g102190	62.500	120	45	0	1	120	148	267	6.51e-52	167
MS.gene026747.t1	MTR_5g019940	55.000	120	53	1	1	120	355	473	1.19e-40	142
MS.gene026747.t1	MTR_5g034210	51.261	119	58	0	1	119	158	276	1.05e-39	136
MS.gene026747.t1	MTR_5g034210	51.261	119	58	0	1	119	165	283	1.23e-39	136
MS.gene026747.t1	MTR_8g077850	52.500	120	56	1	1	120	436	554	3.51e-39	138
MS.gene026747.t1	MTR_5g034210	51.261	119	58	0	1	119	245	363	4.83e-39	136
MS.gene026747.t1	MTR_6g088510	50.000	118	59	0	3	120	199	316	1.48e-38	134
MS.gene026747.t1	MTR_7g018890	50.000	120	60	0	1	120	494	613	5.38e-37	132

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene026747.t1	AT2G18470	53.333	120	55	1	1	120	383	501	1.29e-38	137
MS.gene026747.t1	AT2G18470	53.333	120	55	1	1	120	383	501	1.29e-38	137
MS.gene026747.t1	AT2G18470	53.333	120	55	1	1	120	383	501	1.29e-38	137
MS.gene026747.t1	AT3G18810	49.180	122	61	1	1	122	436	556	2.26e-38	136
MS.gene026747.t1	AT1G49270	50.833	120	58	1	1	120	436	554	4.64e-38	135
MS.gene026747.t1	AT1G52540	50.413	121	57	2	1	120	138	256	5.71e-38	131
MS.gene026747.t1	AT1G52540	50.413	121	57	2	1	120	141	259	1.03e-37	130
MS.gene026747.t1	AT1G68690	51.667	120	58	0	1	120	475	594	1.75e-37	134
MS.gene026747.t1	AT1G68690	51.667	120	58	0	1	120	475	594	1.75e-37	134
MS.gene026747.t1	AT1G68690	51.667	120	58	0	1	120	475	594	1.75e-37	134

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Find 35 sgRNAs with CRISPR-Local

Find 53 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACTCCTTCAGCGCATCCAA+TGG	0.645259	4.1:-85706383	None:intergenic
ACAAGTGACTGCAAATGTTA+AGG	0.381788	4.1:+85706925	MS.gene026747:CDS
AGTTGTGATGTTTATAGCTT+TGG	0.426376	4.1:+85707001	MS.gene026747:CDS
ATATCTCTATGGATGATACG+TGG	0.724450	4.1:-85706815	None:intergenic
ATTGCCATTGGATGCGCTGA+AGG	0.538378	4.1:+85706379	MS.gene026747:CDS
ATTTCTTCTCACAAACCAAA+TGG	0.475393	4.1:-85707112	None:intergenic
CAAACCCAATAATGTGTTAT+TGG	0.179587	4.1:+85706838	MS.gene026747:CDS
CAAGTGACTGCAAATGTTAA+GGG	0.416430	4.1:+85706926	MS.gene026747:CDS
CACTAGCTAGTTCCAGAAGG+AGG	0.630116	4.1:-85707027	None:intergenic
CGAAACCACCGATTCGAGCT+CGG	0.582431	4.1:-85706871	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGGAAAAGGCTATTAAATCT+TGG	+	chr4.1:85706629-85706648	MS.gene026747:intron	30.0%
AGTCTAAGTTACTAAGGAAA+AGG	+	chr4.1:85706615-85706634	MS.gene026747:intron	30.0%
AGTTGTGATGTTTATAGCTT+TGG	+	chr4.1:85707001-85707020	MS.gene026747:CDS	30.0%
CAAACCCAATAATGTGTTAT+TGG	+	chr4.1:85706838-85706857	MS.gene026747:CDS	30.0%
GTGGAACTAACCTTTATAAT+TGG	-	chr4.1:85707061-85707080	None:intergenic	30.0%
TATTGGGTTTGATATCTCTA+TGG	-	chr4.1:85706829-85706848	None:intergenic	30.0%
TCCTTAGTAACTTAGACTTT+GGG	-	chr4.1:85706613-85706632	None:intergenic	30.0%
TTACCTGATATAGCATATTC+TGG	-	chr4.1:85706971-85706990	None:intergenic	30.0%
TTCCTTAGTAACTTAGACTT+TGG	-	chr4.1:85706614-85706633	None:intergenic	30.0%
ACAAGTGACTGCAAATGTTA+AGG	+	chr4.1:85706925-85706944	MS.gene026747:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.1	gene	85706373	85707126	85706373	ID=MS.gene026747
chr4.1	mRNA	85706373	85707126	85706373	ID=MS.gene026747.t1;Parent=MS.gene026747
chr4.1	exon	85706373	85706407	85706373	ID=MS.gene026747.t1.exon1;Parent=MS.gene026747.t1
chr4.1	CDS	85706373	85706407	85706373	ID=cds.MS.gene026747.t1;Parent=MS.gene026747.t1
chr4.1	exon	85706793	85707126	85706793	ID=MS.gene026747.t1.exon2;Parent=MS.gene026747.t1
chr4.1	CDS	85706793	85707126	85706793	ID=cds.MS.gene026747.t1;Parent=MS.gene026747.t1

Gene Sequence

>MS.gene026747

ATGAATATTGCCATTGGATGCGCTGAAGGAGTTGTGTGAGTACTAGCTTTAGTTTTTCGGATTCGGATTCTCTCAAGTCCTAAAATTATTGAAGTTCATGCTATTTAGGCAAAACACACTTGAAATTTTCCTAACTGCAAAATCTTCAAGAATTTTGAAATTTAGATAACCCCAAATATGACTTTTTTACTATCTCGTTACATTATTCTTGAATCGTGCTACTTTCAGTAGGGTCGGCCCAAAGTCTAAGTTACTAAGGAAAAGGCTATTAAATCTTGGAAAAAAAATATACTTATTATTAATGACTAATTAGTATTCTTTTTAGAAAAAAGCCAAATCTAAAACTCTTGCACAAAGTTAAAAATCTCTCAAAAAAACTGTTTTAGGTGTCACTTATTTTGAGTTTGTATCGACTTTCAGATATCTTCATCACCAAGCAACGCCACGTATCATCCATAGAGATATCAAACCCAATAATGTGTTATTGGATTCAGATTTCCGAGCTCGAATCGGTGGTTTCGGGTTCGCTAGGTTGATCCCTGATGGAGCAACACAAGTGACTGCAAATGTTAAGGGTACCTTAGGCTATGTTGCACCAGAATATGCTATATCAGGTAAAGTAACTGAAAGTTGTGATGTTTATAGCTTTGGTATCCTCCTTCTGGAACTAGCTAGTGGGAAAAAACCAATTATAAAGGTTAGTTCCACATTGAAGAAAACAATAGTTGATTGGGCATTGCCATTTGGTTTGTGA

Protein sequence

>MS.gene026747.t1

MNIAIGCAEGVVYLHHQATPRIIHRDIKPNNVLLDSDFRARIGGFGFARLIPDGATQVTANVKGTLGYVAPEYAISGKVTESCDVYSFGILLLELASGKKPIIKVSSTLKKTIVDWALPFGL