AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene026859

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene026859.t1 MTR_2g076210 77.929 367 31 1 1 317 1 367 0.0 582
MS.gene026859.t1 MTR_2g076200 63.978 372 75 6 1 317 4 371 5.96e-161 454
MS.gene026859.t1 MTR_2g020280 40.833 360 129 8 37 317 39 393 7.69e-77 240
MS.gene026859.t1 MTR_5g020580 41.257 366 126 11 37 317 55 416 1.42e-74 235
MS.gene026859.t1 MTR_8g077195 39.153 378 145 8 22 317 38 412 1.95e-71 227
MS.gene026859.t1 MTR_1g098790 37.662 385 134 11 35 317 51 431 4.75e-71 226
MS.gene026859.t1 MTR_1g088960 38.504 361 134 9 37 317 50 402 2.46e-70 224
MS.gene026859.t1 MTR_1g022370 39.496 357 136 11 37 317 70 422 3.52e-68 219
MS.gene026859.t1 MTR_2g020280 47.368 266 106 7 81 317 34 294 1.64e-67 213
MS.gene026859.t1 MTR_2g007930 35.620 379 141 10 37 317 54 427 2.15e-67 217
MS.gene026859.t1 MTR_8g077620 36.827 353 146 11 25 308 40 384 1.91e-48 166
MS.gene026859.t1 MTR_8g077675 31.081 370 161 10 25 310 36 395 1.17e-39 144
MS.gene026859.t1 MTR_8g077650 37.860 243 126 9 83 309 95 328 6.52e-30 116
MS.gene026859.t1 MTR_8g077640 30.994 342 118 10 34 307 92 383 6.72e-23 98.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene026859.t1 AT1G53320 54.167 384 104 8 1 317 1 379 5.90e-125 363
MS.gene026859.t1 AT2G47900 37.222 360 142 7 37 317 52 406 2.37e-75 237
MS.gene026859.t1 AT2G47900 37.222 360 142 7 37 317 52 406 2.37e-75 237
MS.gene026859.t1 AT2G47900 37.119 361 142 7 37 317 52 407 4.00e-75 236
MS.gene026859.t1 AT2G18280 39.773 352 141 7 34 317 45 393 2.19e-73 231
MS.gene026859.t1 AT2G18280 39.773 352 141 7 34 317 45 393 2.19e-73 231
MS.gene026859.t1 AT1G76900 34.653 404 140 8 35 317 55 455 3.65e-68 220
MS.gene026859.t1 AT1G76900 34.653 404 140 8 35 317 55 455 3.65e-68 220
MS.gene026859.t1 AT1G76900 34.653 404 140 8 35 317 55 455 3.65e-68 220
MS.gene026859.t1 AT3G06380 38.122 362 141 10 31 317 27 380 5.69e-66 212
MS.gene026859.t1 AT1G25280 36.061 391 136 11 37 317 59 445 7.00e-66 214
MS.gene026859.t1 AT1G47270 37.535 357 143 10 33 317 40 388 7.98e-62 201
MS.gene026859.t1 AT1G47270 37.535 357 143 10 33 317 64 412 1.29e-61 201
MS.gene026859.t1 AT1G47270 37.535 357 143 10 33 317 65 413 1.43e-61 201
MS.gene026859.t1 AT5G18680 36.729 373 145 12 25 317 28 389 2.31e-60 197
MS.gene026859.t1 AT1G43640 34.715 386 140 12 35 317 53 429 1.38e-58 194
MS.gene026859.t1 AT3G06380 42.586 263 119 8 79 317 34 288 1.18e-56 185
MS.gene026859.t1 AT1G43640 34.677 372 131 12 49 317 1 363 7.59e-55 182
MS.gene026859.t1 AT5G18680 41.353 266 117 8 81 317 42 297 1.42e-52 175
MS.gene026859.t1 AT1G25280 39.114 271 102 9 106 317 1 267 3.75e-50 167
MS.gene026859.t1 AT1G25280 39.114 271 102 9 106 317 1 267 3.75e-50 167

Find 65 sgRNAs with CRISPR-Local

Find 145 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCATTCGCCTTGGACGTTT+TGG 0.253223 2.4:+21144972 None:intergenic
TCGCCAGCATTAACAGATAA+AGG 0.277525 2.4:-21145680 MS.gene026859:intron
CTCTCCCTCCTGGTTGGCTT+TGG 0.281810 2.4:+21144718 None:intergenic
ATGATATCCGCAAGAAGTTC+TGG 0.302123 2.4:+21146584 None:intergenic
CGGGTAGCTCTGCTAGTTGA+TGG 0.323356 2.4:+21145086 None:intergenic
GCCATTTGCTTAACTAGCTT+CGG 0.353187 2.4:-21144600 MS.gene026859:CDS
GATATCTTCTAGCTGCTAAT+AGG 0.356446 2.4:+21145651 None:intergenic
TCTTCATCTCCTCTCCCTCC+TGG 0.374907 2.4:+21144708 None:intergenic
ATCTTACTGACAAGCCAGTT+TGG 0.393584 2.4:+21144575 None:intergenic
AGCTCTGCTAGTTGATGGTT+TGG 0.396144 2.4:+21145091 None:intergenic
CAAAGCCAACCAGGAGGGAG+AGG 0.411585 2.4:-21144717 MS.gene026859:CDS
CGCCAGCATTAACAGATAAA+GGG 0.417908 2.4:-21145679 MS.gene026859:intron
AACTAGCTTCGGCACCAAAC+TGG 0.421298 2.4:-21144589 MS.gene026859:CDS
CTGTCATATCCTTTCTCTCA+TGG 0.452722 2.4:+21144781 None:intergenic
TCTGTTTGCTTGCAAATCGT+CGG 0.458826 2.4:+21145066 None:intergenic
CCTGTCCTCCGATGCACTAT+CGG 0.461291 2.4:+21146628 None:intergenic
CTTGAACTTCCATGAGAGAA+AGG 0.465557 2.4:-21144790 MS.gene026859:CDS
CAAGGAAGTAATGCTTATGT+TGG 0.475540 2.4:-21145575 MS.gene026859:CDS
CGTTGCTAGCAGGAACTTGA+GGG 0.478306 2.4:+21145039 None:intergenic
AAACGCATGGAAGGCAGATA+AGG 0.478629 2.4:+21144623 None:intergenic
CATCGGAGGACAGGACTGAT+TGG 0.480082 2.4:-21146619 MS.gene026859:CDS
CATCTCCTCTCCCTCCTGGT+TGG 0.480773 2.4:+21144712 None:intergenic
TATTAGCAGCTAGAAGATAT+CGG 0.489255 2.4:-21145649 MS.gene026859:CDS
CTTGTGCCTGCGTTTGCAAA+CGG 0.489375 2.4:-21146508 MS.gene026859:CDS
CTGTTTGCTTGCAAATCGTC+GGG 0.497701 2.4:+21145067 None:intergenic
AACGCATGGAAGGCAGATAA+GGG 0.500964 2.4:+21144624 None:intergenic
CCGATAGTGCATCGGAGGAC+AGG 0.502831 2.4:-21146628 MS.gene026859:CDS
CTTTCGCATATTGATGAGGC+AGG 0.503626 2.4:+21144933 None:intergenic
GCCGAAGCTAGTTAAGCAAA+TGG 0.506693 2.4:+21144599 None:intergenic
AGAGAGCAAATCATTCGCCT+TGG 0.519881 2.4:+21144963 None:intergenic
CAGATACTTCAACAATGCTC+AGG 0.525873 2.4:-21146678 MS.gene026859:CDS
ATCAGTGAAGAACTTTCAGC+TGG 0.527624 2.4:-21144754 MS.gene026859:CDS
ACGTTGCTAGCAGGAACTTG+AGG 0.533605 2.4:+21145038 None:intergenic
CTTCACAATTTACGACAGTC+AGG 0.534994 2.4:-21145120 MS.gene026859:CDS
ATGCTTATGTTGGCAAGCTA+AGG 0.535171 2.4:-21145565 MS.gene026859:intron
ATTAAACGAGTTGATGTCAC+TGG 0.535809 2.4:-21146563 MS.gene026859:CDS
ACTGTCGTAAATTGTGAAGT+TGG 0.540021 2.4:+21145124 None:intergenic
CGCAAGAAGTTCTGGAAGCA+TGG 0.545732 2.4:+21146592 None:intergenic
GCTCAGGCTCTCAATGATAC+CGG 0.547995 2.4:-21146662 MS.gene026859:CDS
CCTACCTCGACGTTGCTAGC+AGG 0.550618 2.4:+21145029 None:intergenic
GGAACGAGCAATTAGAGTGC+TGG 0.557590 2.4:-21144815 MS.gene026859:CDS
CTTTCAGCTGGTTGCCACTG+TGG 0.563933 2.4:-21144742 MS.gene026859:CDS
ACTGTGGACCAAAGCCAACC+AGG 0.574474 2.4:-21144726 MS.gene026859:CDS
TTTATTCTTCAAGATTGTGT+AGG 0.575970 2.4:+21144848 None:intergenic
GCAAATGGCAAACGCATGGA+AGG 0.579450 2.4:+21144614 None:intergenic
CCTGCTAGCAACGTCGAGGT+AGG 0.579723 2.4:-21145029 MS.gene026859:CDS
TTAAGCAAATGGCAAACGCA+TGG 0.595995 2.4:+21144610 None:intergenic
ACAATTTACGACAGTCAGGA+TGG 0.606470 2.4:-21145116 MS.gene026859:CDS
TAAGGGCTGTCTATAGTACA+TGG 0.607232 2.4:+21144641 None:intergenic
GTGCCTGCGTTTGCAAACGG+TGG 0.610120 2.4:-21146505 MS.gene026859:CDS
ACTATCGGTGGTGTCATCGC+CGG 0.619336 2.4:+21146643 None:intergenic
CATGCTTCCAGAACTTCTTG+CGG 0.624235 2.4:-21146591 MS.gene026859:CDS
TGAACTTTCGCATATTGATG+AGG 0.626688 2.4:+21144929 None:intergenic
CACCACCGATAGTGCATCGG+AGG 0.629479 2.4:-21146633 MS.gene026859:CDS
TGAAGAATAAAGCTCCGATG+TGG 0.636117 2.4:-21144836 MS.gene026859:CDS
TCTCCACCGTTTGCAAACGC+AGG 0.641600 2.4:+21146502 None:intergenic
GTCCTCCGATGCACTATCGG+TGG 0.643639 2.4:+21146631 None:intergenic
TGGTTGGCTTTGGTCCACAG+TGG 0.652104 2.4:+21144728 None:intergenic
TCTAATTGCTCGTTCCACAT+CGG 0.654420 2.4:+21144822 None:intergenic
TGGACCAAAGCCAACCAGGA+GGG 0.665639 2.4:-21144722 MS.gene026859:CDS
TGACACCACCGATAGTGCAT+CGG 0.672102 2.4:-21146636 MS.gene026859:CDS
GCGACGACATTTCGACGATG+CGG 0.691215 2.4:+21146530 None:intergenic
AGTTCCTGCTAGCAACGTCG+AGG 0.710261 2.4:-21145033 MS.gene026859:CDS
TTGATGTCACTGGAGAACAA+TGG 0.719375 2.4:-21146553 MS.gene026859:CDS
GTGGACCAAAGCCAACCAGG+AGG 0.733661 2.4:-21144723 MS.gene026859:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATATATTATTTTAATATT+AGG - chr2.4:21145249-21145268 MS.gene026859:intron 0.0%
!! AAAATACATTATTTGATTAT+GGG - chr2.4:21145876-21145895 MS.gene026859:intron 10.0%
!! ATAATGATTAAAGTTTCAAA+TGG - chr2.4:21145501-21145520 MS.gene026859:intron 15.0%
!! CAAAATACATTATTTGATTA+TGG - chr2.4:21145875-21145894 MS.gene026859:intron 15.0%
!! ATAACAAAAGAGAAAATAGA+AGG + chr2.4:21146036-21146055 None:intergenic 20.0%
!! GATGCATTTATTAAGTATAT+AGG - chr2.4:21145224-21145243 MS.gene026859:intron 20.0%
!! TCAAACTATTAATGAAGAAA+AGG + chr2.4:21145152-21145171 None:intergenic 20.0%
!! TTTATGGATCATGAAAAATT+TGG - chr2.4:21144923-21144942 MS.gene026859:CDS 20.0%
!! TTTCAAATTATTAGTTGTGT+CGG + chr2.4:21145052-21145071 None:intergenic 20.0%
!! TTTCTCTCTTGAATAATTTA+TGG - chr2.4:21144907-21144926 MS.gene026859:CDS 20.0%
!!! ATTTTGAAAACACTACATAA+AGG + chr2.4:21145861-21145880 None:intergenic 20.0%
! AAAACATTTCAGCAACTAAT+TGG + chr2.4:21146119-21146138 None:intergenic 25.0%
! ATACATTATTTGATTATGGG+TGG - chr2.4:21145879-21145898 MS.gene026859:intron 25.0%
! TTTATTCTTCAAGATTGTGT+AGG + chr2.4:21146440-21146459 None:intergenic 25.0%
!! AAATGAATTCATTTTGTTGC+AGG + chr2.4:21144883-21144902 None:intergenic 25.0%
!! CTAACATTTTGTTCAATTAG+TGG - chr2.4:21144981-21145000 MS.gene026859:CDS 25.0%
!!! TTTTATTTCTTTCCTGAATG+AGG + chr2.4:21145778-21145797 None:intergenic 25.0%
CAAAACAGTACTTACTTACA+TGG + chr2.4:21145453-21145472 None:intergenic 30.0%
CACTACATAAAGGTAAACTA+TGG + chr2.4:21145851-21145870 None:intergenic 30.0%
GAGTAAAATTATCCTCATTC+AGG - chr2.4:21145763-21145782 MS.gene026859:intron 30.0%
TACTTACTTACATGGTGTAA+GGG + chr2.4:21145445-21145464 None:intergenic 30.0%
TATTAGCAGCTAGAAGATAT+CGG - chr2.4:21145636-21145655 MS.gene026859:CDS 30.0%
TATTCCAATTTACAACACAG+TGG + chr2.4:21145392-21145411 None:intergenic 30.0%
! CAAAAGGCTAAACTTTTTGT+AGG + chr2.4:21146290-21146309 None:intergenic 30.0%
!! CATGTAAGTAAGTACTGTTT+TGG - chr2.4:21145451-21145470 MS.gene026859:intron 30.0%
!! GTTTTGGCAAAAGGATTATT+TGG - chr2.4:21145467-21145486 MS.gene026859:intron 30.0%
!! TTCTCCAGTTTTGTAAAGTA+GGG - chr2.4:21146608-21146627 MS.gene026859:CDS 30.0%
!!! TGAGCTGTTTTTGAAAGATA+CGG - chr2.4:21145825-21145844 MS.gene026859:intron 30.0%
AAGATAGAGGTAAAATGTGG+AGG + chr2.4:21145421-21145440 None:intergenic 35.0%
ACTGTCGTAAATTGTGAAGT+TGG + chr2.4:21146164-21146183 None:intergenic 35.0%
ATTATGGGTGGAACAATTCT+TGG - chr2.4:21145891-21145910 MS.gene026859:intron 35.0%
CAAGGAAGTAATGCTTATGT+TGG - chr2.4:21145710-21145729 MS.gene026859:intron 35.0%
CTAGCATTTGATCTTACACT+TGG - chr2.4:21146010-21146029 MS.gene026859:intron 35.0%
GTAATTACAAGTGTTCGTGT+CGG - chr2.4:21145089-21145108 MS.gene026859:CDS 35.0%
GTACTTACTTACATGGTGTA+AGG + chr2.4:21145446-21145465 None:intergenic 35.0%
GTGAGAATTAGAACTTGTGA+TGG - chr2.4:21146063-21146082 MS.gene026859:intron 35.0%
TGAACTTTCGCATATTGATG+AGG + chr2.4:21146359-21146378 None:intergenic 35.0%
TTCCCTTTATCTGTTAATGC+TGG + chr2.4:21145611-21145630 None:intergenic 35.0%
TTGTGTTAATCCTCTATTCC+CGG + chr2.4:21145969-21145988 None:intergenic 35.0%
TTTCCCTTCTTGTCTTAAAC+AGG - chr2.4:21144856-21144875 MS.gene026859:CDS 35.0%
! ACAAGTTCTAATTCTCACAC+AGG + chr2.4:21146061-21146080 None:intergenic 35.0%
! GATATCTTCTAGCTGCTAAT+AGG + chr2.4:21145637-21145656 None:intergenic 35.0%
! GTGATTTTTCCGTTAAGAGA+AGG + chr2.4:21144836-21144855 None:intergenic 35.0%
!! ACTCTTGATTTTGACAACCT+TGG - chr2.4:21145327-21145346 MS.gene026859:intron 35.0%
!! ATTAAACGAGTTGATGTCAC+TGG - chr2.4:21144722-21144741 MS.gene026859:CDS 35.0%
!! CTTCTCCAGTTTTGTAAAGT+AGG - chr2.4:21146607-21146626 MS.gene026859:CDS 35.0%
!! TCTCCAGTTTTGTAAAGTAG+GGG - chr2.4:21146609-21146628 MS.gene026859:CDS 35.0%
!!! GTAAGTACTGTTTTGGCAAA+AGG - chr2.4:21145458-21145477 MS.gene026859:intron 35.0%
!!! TTGGACGTTTTGGTTTCAAA+AGG + chr2.4:21146306-21146325 None:intergenic 35.0%
!!! TTTTGAAACCAAAACGTCCA+AGG - chr2.4:21146305-21146324 MS.gene026859:intron 35.0%
ACAATTTACGACAGTCAGGA+TGG - chr2.4:21146169-21146188 MS.gene026859:intron 40.0%
ATCAGTGAAGAACTTTCAGC+TGG - chr2.4:21146531-21146550 MS.gene026859:CDS 40.0%
ATCTGTTAATGCTGGCGATT+TGG + chr2.4:21145603-21145622 None:intergenic 40.0%
ATGATATCCGCAAGAAGTTC+TGG + chr2.4:21144704-21144723 None:intergenic 40.0%
ATGCTTATGTTGGCAAGCTA+AGG - chr2.4:21145720-21145739 MS.gene026859:intron 40.0%
CAATTTACAACACAGTGGTG+GGG + chr2.4:21145387-21145406 None:intergenic 40.0%
CAGATACTTCAACAATGCTC+AGG - chr2.4:21144607-21144626 MS.gene026859:CDS 40.0%
CCAATTTACAACACAGTGGT+GGG + chr2.4:21145388-21145407 None:intergenic 40.0%
CGCCAGCATTAACAGATAAA+GGG - chr2.4:21145606-21145625 MS.gene026859:CDS 40.0%
CTGTCATATCCTTTCTCTCA+TGG + chr2.4:21146507-21146526 None:intergenic 40.0%
CTTCACAATTTACGACAGTC+AGG - chr2.4:21146165-21146184 MS.gene026859:intron 40.0%
CTTGAACTTCCATGAGAGAA+AGG - chr2.4:21146495-21146514 MS.gene026859:CDS 40.0%
GAAAGGTAACCCTAGTAATC+TGG + chr2.4:21145945-21145964 None:intergenic 40.0%
GGCAAGATAGAGGTAAAATG+TGG + chr2.4:21145424-21145443 None:intergenic 40.0%
TAAGGGCTGTCTATAGTACA+TGG + chr2.4:21146647-21146666 None:intergenic 40.0%
TAGTGGCTATCTATGAAGCA+CGG - chr2.4:21144998-21145017 MS.gene026859:CDS 40.0%
TCCAATTTACAACACAGTGG+TGG + chr2.4:21145389-21145408 None:intergenic 40.0%
TCGCCAGCATTAACAGATAA+AGG - chr2.4:21145605-21145624 MS.gene026859:CDS 40.0%
TCTAATTGCTCGTTCCACAT+CGG + chr2.4:21146466-21146485 None:intergenic 40.0%
TCTACGAGTCAATTTCACGT+AGG - chr2.4:21145286-21145305 MS.gene026859:intron 40.0%
TCTGTTTGCTTGCAAATCGT+CGG + chr2.4:21146222-21146241 None:intergenic 40.0%
TGAAGAATAAAGCTCCGATG+TGG - chr2.4:21146449-21146468 MS.gene026859:intron 40.0%
TGTGTTAATCCTCTATTCCC+GGG + chr2.4:21145968-21145987 None:intergenic 40.0%
TTAAGCAAATGGCAAACGCA+TGG + chr2.4:21146678-21146697 None:intergenic 40.0%
TTGATGTCACTGGAGAACAA+TGG - chr2.4:21144732-21144751 MS.gene026859:CDS 40.0%
! AACCCTAGTAATCTGGAGTT+CGG + chr2.4:21145938-21145957 None:intergenic 40.0%
! AGGACCTGTTTAAGACAAGA+AGG + chr2.4:21144863-21144882 None:intergenic 40.0%
! GATGCTGATGACTTTTCACA+AGG - chr2.4:21145692-21145711 MS.gene026859:intron 40.0%
! GCCATTTGCTTAACTAGCTT+CGG - chr2.4:21146685-21146704 MS.gene026859:CDS 40.0%
! GGACCTGTTTAAGACAAGAA+GGG + chr2.4:21144862-21144881 None:intergenic 40.0%
!! CTCCAGTTTTGTAAAGTAGG+GGG - chr2.4:21146610-21146629 MS.gene026859:CDS 40.0%
AAACGCATGGAAGGCAGATA+AGG + chr2.4:21146665-21146684 None:intergenic 45.0%
AACGCATGGAAGGCAGATAA+GGG + chr2.4:21146664-21146683 None:intergenic 45.0%
AGAGAGCAAATCATTCGCCT+TGG + chr2.4:21146325-21146344 None:intergenic 45.0%
ATATCACACGTGAGGTCGTA+GGG - chr2.4:21144807-21144826 MS.gene026859:CDS 45.0%
ATGGTGTAAGGGCAAGATAG+AGG + chr2.4:21145434-21145453 None:intergenic 45.0%
CACCCCCTACTTTACAAAAC+TGG + chr2.4:21146615-21146634 None:intergenic 45.0%
CATGCTTCCAGAACTTCTTG+CGG - chr2.4:21144694-21144713 MS.gene026859:CDS 45.0%
CCCACCACTGTGTTGTAAAT+TGG - chr2.4:21145385-21145404 MS.gene026859:intron 45.0%
CTATTCAGAAGAGACGCGTA+AGG + chr2.4:21145805-21145824 None:intergenic 45.0%
CTGTTTGCTTGCAAATCGTC+GGG + chr2.4:21146221-21146240 None:intergenic 45.0%
CTTTCGCATATTGATGAGGC+AGG + chr2.4:21146355-21146374 None:intergenic 45.0%
GCCGAAGCTAGTTAAGCAAA+TGG + chr2.4:21146689-21146708 None:intergenic 45.0%
GCTGGAAGTCATCAAAACCA+AGG + chr2.4:21145347-21145366 None:intergenic 45.0%
GTAGGGTCACCTTCTCTTAA+CGG - chr2.4:21144824-21144843 MS.gene026859:CDS 45.0%
GTGTTAATCCTCTATTCCCG+GGG + chr2.4:21145967-21145986 None:intergenic 45.0%
TTACTAGGGTTACCTTTCCC+CGG - chr2.4:21145947-21145966 MS.gene026859:intron 45.0%
! ATCATTCGCCTTGGACGTTT+TGG + chr2.4:21146316-21146335 None:intergenic 45.0%
!! AGCTCTGCTAGTTGATGGTT+TGG + chr2.4:21146197-21146216 None:intergenic 45.0%
!! GTTTTGATGACTTCCAGCCA+GGG - chr2.4:21145349-21145368 MS.gene026859:intron 45.0%
AATCCTCTATTCCCGGGGAA+AGG + chr2.4:21145962-21145981 None:intergenic 50.0%
ACGTTGCTAGCAGGAACTTG+AGG + chr2.4:21146250-21146269 None:intergenic 50.0%
CGTTGCTAGCAGGAACTTGA+GGG + chr2.4:21146249-21146268 None:intergenic 50.0%
CTTGTGCCTGCGTTTGCAAA+CGG - chr2.4:21144777-21144796 MS.gene026859:CDS 50.0%
GATATCACACGTGAGGTCGT+AGG - chr2.4:21144806-21144825 MS.gene026859:CDS 50.0%
GCAAATGGCAAACGCATGGA+AGG + chr2.4:21146674-21146693 None:intergenic 50.0%
GCTCAGGCTCTCAATGATAC+CGG - chr2.4:21144623-21144642 MS.gene026859:CDS 50.0%
GGAACGAGCAATTAGAGTGC+TGG - chr2.4:21146470-21146489 MS.gene026859:intron 50.0%
GGCCGAACTCCAGATTACTA+GGG - chr2.4:21145933-21145952 MS.gene026859:intron 50.0%
GGTCAGACTGTACTTGCTCA+TGG - chr2.4:21145912-21145931 MS.gene026859:intron 50.0%
GTGGAGAGATATCACACGTG+AGG - chr2.4:21144799-21144818 MS.gene026859:CDS 50.0%
TACTAGGGTTACCTTTCCCC+GGG - chr2.4:21145948-21145967 MS.gene026859:intron 50.0%
TGACACCACCGATAGTGCAT+CGG - chr2.4:21144649-21144668 MS.gene026859:CDS 50.0%
TGGCCGAACTCCAGATTACT+AGG - chr2.4:21145932-21145951 MS.gene026859:intron 50.0%
TTACCTTTCCCCGGGAATAG+AGG - chr2.4:21145956-21145975 MS.gene026859:intron 50.0%
! AACTAGCTTCGGCACCAAAC+TGG - chr2.4:21146696-21146715 MS.gene026859:CDS 50.0%
! TTACAACACAGTGGTGGGGA+AGG + chr2.4:21145383-21145402 None:intergenic 50.0%
!! CGCAAGAAGTTCTGGAAGCA+TGG + chr2.4:21144696-21144715 None:intergenic 50.0%
!! GGTTTTGATGACTTCCAGCC+AGG - chr2.4:21145348-21145367 MS.gene026859:intron 50.0%
ACTGTGGACCAAAGCCAACC+AGG - chr2.4:21146559-21146578 MS.gene026859:CDS 55.0%
AGTTCCTGCTAGCAACGTCG+AGG - chr2.4:21146252-21146271 MS.gene026859:intron 55.0%
CATCGGAGGACAGGACTGAT+TGG - chr2.4:21144666-21144685 MS.gene026859:CDS 55.0%
CCTGTCCTCCGATGCACTAT+CGG + chr2.4:21144660-21144679 None:intergenic 55.0%
CTTTCAGCTGGTTGCCACTG+TGG - chr2.4:21146543-21146562 MS.gene026859:CDS 55.0%
GCACGGATACAGACACGACA+CGG - chr2.4:21145015-21145034 MS.gene026859:CDS 55.0%
GCGACGACATTTCGACGATG+CGG + chr2.4:21144758-21144777 None:intergenic 55.0%
TCTCCACCGTTTGCAAACGC+AGG + chr2.4:21144786-21144805 None:intergenic 55.0%
TCTTCATCTCCTCTCCCTCC+TGG + chr2.4:21146580-21146599 None:intergenic 55.0%
TGGACCAAAGCCAACCAGGA+GGG - chr2.4:21146563-21146582 MS.gene026859:CDS 55.0%
! CGGGTAGCTCTGCTAGTTGA+TGG + chr2.4:21146202-21146221 None:intergenic 55.0%
!! ACTATCGGTGGTGTCATCGC+CGG + chr2.4:21144645-21144664 None:intergenic 55.0%
!! TGGTTGGCTTTGGTCCACAG+TGG + chr2.4:21146560-21146579 None:intergenic 55.0%
CAAAGCCAACCAGGAGGGAG+AGG - chr2.4:21146568-21146587 MS.gene026859:CDS 60.0%
CACCACCGATAGTGCATCGG+AGG - chr2.4:21144652-21144671 MS.gene026859:CDS 60.0%
CATCTCCTCTCCCTCCTGGT+TGG + chr2.4:21146576-21146595 None:intergenic 60.0%
CCGATAGTGCATCGGAGGAC+AGG - chr2.4:21144657-21144676 MS.gene026859:CDS 60.0%
CCTACCTCGACGTTGCTAGC+AGG + chr2.4:21146259-21146278 None:intergenic 60.0%
CCTGCTAGCAACGTCGAGGT+AGG - chr2.4:21146256-21146275 MS.gene026859:intron 60.0%
GTCCTCCGATGCACTATCGG+TGG + chr2.4:21144657-21144676 None:intergenic 60.0%
GTGCCTGCGTTTGCAAACGG+TGG - chr2.4:21144780-21144799 MS.gene026859:CDS 60.0%
GTGGACCAAAGCCAACCAGG+AGG - chr2.4:21146562-21146581 MS.gene026859:CDS 60.0%
!! CTCTCCCTCCTGGTTGGCTT+TGG + chr2.4:21146570-21146589 None:intergenic 60.0%
! CAGTGGTGGGGAAGGTCGCG+TGG + chr2.4:21145375-21145394 None:intergenic 70.0%
GAAGGTCGCGTGGCCCTGGC+TGG + chr2.4:21145365-21145384 None:intergenic 75.0%
TGGGGAAGGTCGCGTGGCCC+TGG + chr2.4:21145369-21145388 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr2.4 gene 21144578 21146729 21144578 ID=MS.gene026859
chr2.4 mRNA 21144578 21146729 21144578 ID=MS.gene026859.t1;Parent=MS.gene026859
chr2.4 exon 21146492 21146729 21146492 ID=MS.gene026859.t1.exon1;Parent=MS.gene026859.t1
chr2.4 CDS 21146492 21146729 21146492 ID=cds.MS.gene026859.t1;Parent=MS.gene026859.t1
chr2.4 exon 21145566 21145695 21145566 ID=MS.gene026859.t1.exon2;Parent=MS.gene026859.t1
chr2.4 CDS 21145566 21145695 21145566 ID=cds.MS.gene026859.t1;Parent=MS.gene026859.t1
chr2.4 exon 21144578 21145163 21144578 ID=MS.gene026859.t1.exon3;Parent=MS.gene026859.t1
chr2.4 CDS 21144578 21145163 21144578 ID=cds.MS.gene026859.t1;Parent=MS.gene026859.t1
Gene Sequence

>MS.gene026859

ATGAAGCTCTTTCGATCTCTTAAATTCTTCAGATACTTCAACAATGCTCAGGCTCTCAATGATACCGGCGATGACACCACCGATAGTGCATCGGAGGACAGGACTGATTGGTCTACCATGCTTCCAGAACTTCTTGCGGATATCATTAAACGAGTTGATGTCACTGGAGAACAATGGCCGCATCGTCGAAATGTCGTCGCTTGTGCCTGCGTTTGCAAACGGTGGAGAGATATCACACGTGAGGTCGTAGGGTCACCTTCTCTTAACGGAAAAATCACTTTCCCTTCTTGTCTTAAACAGGTCCTGCAACAAAATGAATTCATTTTATTTTTCTCTCTTGAATAATTTATGGATCATGAAAAATTTGGATGTAGTAATACATTATTTTTCTTCATAATGAAGACTAACATTTTGTTCAATTAGTGGCTATCTATGAAGCACGGATACAGACACGACACGGACACTGACAGACCGACACAACTAATAATTTGAAAAAATTACATAATTCAGTGTAATTACAAGTGTTCGTGTCGGTTAATTACATATTTCATCTCAATTTTTAAACTCAATTCCTTTTCTTCATTAATAGTTTGATTTTGTTCATATCAATTTTTTCTTTAGAATTGAGTTAAAATTTTGAATTATTGATGCATTTATTAAGTATATAGGTCATATATATTATTTTAATATTAGGTAAACTCGTACAAGTCTACGAGTCAATTTCACGTAGGCAAATTGAGTTTACTTAAACTCTTGATTTTGACAACCTTGGTTTTGATGACTTCCAGCCAGGGCCACGCGACCTTCCCCACCACTGTGTTGTAAATTGGAATAAGAAGACCTCCACATTTTACCTCTATCTTGCCCTTACACCATGTAAGTAAGTACTGTTTTGGCAAAAGGATTATTTGGTTATAACTATGATAATGATTAAAGTTTCAAATGGAGATTAGACAGTGTTATTTTTCTCAATATTCAAAAAATATAACTTGATAATATTGCACAACTTATGATTTCTTTTTCCAAATCGCCAGCATTAACAGATAAAGGGAAGTTCCTATTAGCAGCTAGAAGATATCGGTGTGTTACACATACTGAGCATGTTATGTCGCTCGATGCTGATGACTTTTCACAAGGAAGTAATGCTTATGTTGGCAAGCTAAGGTAAATATTTCTTGTAACAGAGAGTAAAATTATCCTCATTCAGGAAAGAAATAAAAAGTTCCTTACGCGTCTCTTCTGAATAGTGAGCTGTTTTTGAAAGATACGGCCATAGTTTACCTTTATGTAGTGTTTTCAAAATACATTATTTGATTATGGGTGGAACAATTCTTGGTCAGACTGTACTTGCTCATGGCCGAACTCCAGATTACTAGGGTTACCTTTCCCCGGGAATAGAGGATTAACACAAAAAAAACGCATTAGTGTAGTGCTAGCATTTGATCTTACACTTGGCCTTCTATTTTCTCTTTTGTTATCACCTGTGTGAGAATTAGAACTTGTGATGGCACAATTTTTTGCTTCATCTCGAGTACTGACCAATTAGTTGCTGAAATGTTTTCACAGTTCAGATTTTCTTGAAGCCAACTTCACAATTTACGACAGTCAGGATGGTGCCAAACCATCAACTAGCAGAGCTACCCGACGATTTGCAAGCAAACAGATAAGCCCTCAAGTTCCTGCTAGCAACGTCGAGGTAGGAAACATCTCCTACAAAAAGTTTAGCCTTTTGAAACCAAAACGTCCAAGGCGAATGATTTGCTCTCTGAAGTCTCCTGCCTCATCAATATGCGAAAGTTCAGACAGCAAGTCTTTCGATCAACATACGATGCACTGTAAAGAACAAGCTACTTCTTCTGCCTACACAATCTTGAAGAATAAAGCTCCGATGTGGAACGAGCAATTAGAGTGCTGGTTCTTGAACTTCCATGAGAGAAAGGATATGACAGTAGCATCAGTGAAGAACTTTCAGCTGGTTGCCACTGTGGACCAAAGCCAACCAGGAGGGAGAGGAGATGAAGAAACAGTTCTTCTCCAGTTTTGTAAAGTAGGGGGTGATACTTTCACCATGTACTATAGACAGCCCTTATCTGCCTTCCATGCGTTTGCCATTTGCTTAACTAGCTTCGGCACCAAACTGGCTTGTCAGTAA
Protein sequence

>MS.gene026859.t1

MKLFRSLKFFRYFNNAQALNDTGDDTTDSASEDRTDWSTMLPELLADIIKRVDVTGEQWPHRRNVVACACVCKRWRDITPLTDKGKFLLAARRYRCVTHTEHVMSLDADDFSQGSNAYVGKLSSDFLEANFTIYDSQDGAKPSTSRATRRFASKQISPQVPASNVEVGNISYKKFSLLKPKRPRRMICSLKSPASSICESSDSKSFDQHTMHCKEQATSSAYTILKNKAPMWNEQLECWFLNFHERKDMTVASVKNFQLVATVDQSQPGGRGDEETVLLQFCKVGGDTFTMYYRQPLSAFHAFAICLTSFGTKLACQ