AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene026886

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene026886.t1 MTR_2g075680 93.485 307 17 3 1 305 1 306 0.0 544
MS.gene026886.t1 MTR_2g075690 76.527 311 56 4 1 305 1 300 1.30e-163 457
MS.gene026886.t1 MTR_2g075700 75.082 305 70 5 1 305 1 299 4.46e-151 426
MS.gene026886.t1 MTR_7g073430 37.891 256 126 6 12 267 10 232 4.75e-49 165
MS.gene026886.t1 MTR_7g073380 38.983 236 115 5 12 245 11 219 3.24e-48 163
MS.gene026886.t1 MTR_2g075750 49.123 171 80 3 134 304 13 176 3.86e-47 157
MS.gene026886.t1 MTR_2g075610 46.893 177 86 4 131 304 11 182 1.75e-46 155
MS.gene026886.t1 MTR_8g005750 38.655 238 96 7 14 245 4 197 1.14e-40 143
MS.gene026886.t1 MTR_0002s1250 37.759 241 110 8 10 245 3 208 1.63e-40 142
MS.gene026886.t1 MTR_8g032510 38.655 238 116 7 11 245 4 214 6.01e-39 139
MS.gene026886.t1 MTR_3g093830 35.961 203 103 7 62 244 47 242 6.33e-28 110
MS.gene026886.t1 MTR_5g067700 39.831 118 68 2 132 249 90 204 6.81e-24 97.8
MS.gene026886.t1 MTR_7g117200 45.361 97 44 2 132 219 92 188 6.23e-20 88.6
MS.gene026886.t1 MTR_8g099350 29.384 211 112 7 10 208 6 191 6.39e-19 86.3
MS.gene026886.t1 MTR_3g090860 29.954 217 101 8 14 208 5 192 3.91e-18 84.0
MS.gene026886.t1 MTR_8g027860 43.158 95 45 2 125 211 105 198 1.34e-17 82.4
MS.gene026886.t1 MTR_5g067680 45.977 87 41 1 149 229 202 288 3.92e-17 81.3
MS.gene026886.t1 MTR_7g079010 40.952 105 51 4 105 206 99 195 4.92e-17 78.6
MS.gene026886.t1 MTR_7g028415 50.649 77 34 2 147 223 91 163 5.93e-16 74.7
MS.gene026886.t1 MTR_7g028710 50.649 77 34 2 147 223 91 163 5.93e-16 74.7
MS.gene026886.t1 MTR_2g075640 42.241 116 52 6 8 121 6 108 1.05e-15 72.4
MS.gene026886.t1 MTR_2g075730 41.379 116 53 6 8 121 6 108 2.73e-15 71.2
MS.gene026886.t1 MTR_7g109800 39.773 88 50 1 120 207 116 200 1.79e-14 72.8
MS.gene026886.t1 MTR_8g092140 50.000 60 27 1 147 206 158 214 2.47e-14 71.6
MS.gene026886.t1 MTR_1g086790 40.909 88 49 1 120 207 129 213 3.52e-14 72.4
MS.gene026886.t1 MTR_3g095080 49.180 61 28 1 147 207 166 223 4.18e-14 70.9
MS.gene026886.t1 MTR_3g095080 49.180 61 28 1 147 207 142 199 5.03e-14 70.5
MS.gene026886.t1 MTR_8g007270 40.000 90 48 2 120 206 122 208 5.13e-14 70.5
MS.gene026886.t1 MTR_5g073620 33.582 134 74 3 107 235 631 754 2.01e-13 71.2
MS.gene026886.t1 MTR_5g043880 39.326 89 48 2 148 233 123 208 2.36e-13 69.3
MS.gene026886.t1 MTR_4g122530 50.847 59 26 1 148 206 207 262 3.98e-13 69.7
MS.gene026886.t1 MTR_5g091390 52.542 59 25 1 148 206 156 211 4.21e-13 68.9
MS.gene026886.t1 MTR_7g100510 48.387 62 29 1 145 206 357 415 8.84e-13 68.6
MS.gene026886.t1 MTR_2g033820 45.946 74 37 1 148 221 202 272 1.14e-12 68.2
MS.gene026886.t1 MTR_3g104750 35.185 108 59 3 111 212 62 164 1.31e-12 65.1
MS.gene026886.t1 MTR_5g042920 50.000 60 27 1 147 206 318 374 1.44e-12 68.2
MS.gene026886.t1 MTR_4g094588 50.847 59 26 1 148 206 177 232 1.67e-12 67.4
MS.gene026886.t1 MTR_8g096730 45.000 60 30 1 147 206 68 124 1.78e-12 64.3
MS.gene026886.t1 MTR_5g085600 74.419 43 10 1 86 128 11 52 1.86e-12 62.0
MS.gene026886.t1 MTR_7g011820 48.333 60 28 1 147 206 408 464 1.90e-12 67.8
MS.gene026886.t1 MTR_7g011820 45.902 61 29 2 146 206 225 281 5.33e-11 63.5
MS.gene026886.t1 MTR_4g082580 48.333 60 28 1 147 206 276 332 3.27e-12 67.0
MS.gene026886.t1 MTR_1g009613 34.286 105 62 4 104 206 218 317 4.93e-12 66.2
MS.gene026886.t1 MTR_4g127040 37.349 83 50 1 124 206 220 300 7.19e-12 65.5
MS.gene026886.t1 MTR_8g028565 37.634 93 51 2 121 213 132 217 1.26e-11 64.7
MS.gene026886.t1 MTR_3g056100 46.667 60 29 1 147 206 400 456 1.35e-11 65.5
MS.gene026886.t1 MTR_3g056100 46.667 60 29 1 147 206 413 469 1.45e-11 65.5
MS.gene026886.t1 MTR_5g094430 46.667 60 29 1 147 206 362 418 1.57e-11 65.1
MS.gene026886.t1 MTR_3g056100 46.667 60 29 1 147 206 256 312 1.95e-11 64.7
MS.gene026886.t1 MTR_3g056100 46.667 60 29 1 147 206 269 325 2.29e-11 64.3
MS.gene026886.t1 MTR_5g094430 46.667 60 29 1 147 206 228 284 2.39e-11 64.3
MS.gene026886.t1 MTR_5g094430 46.667 60 29 1 147 206 250 306 2.52e-11 64.3
MS.gene026886.t1 MTR_1g015140 43.939 66 34 1 142 207 95 157 4.26e-11 60.8
MS.gene026886.t1 MTR_5g074400 48.333 60 28 1 147 206 418 474 5.65e-11 63.5
MS.gene026886.t1 MTR_7g062220 51.667 60 26 1 147 206 122 178 5.87e-11 62.8
MS.gene026886.t1 MTR_7g110720 41.463 82 38 2 125 206 173 244 7.41e-11 62.8
MS.gene026886.t1 MTR_3g009470 37.079 89 48 2 147 230 493 578 8.42e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene026886.t1 AT5G22570 33.163 196 105 5 64 259 42 211 7.86e-25 101
MS.gene026886.t1 AT3G56400 32.020 203 113 4 7 208 1 179 7.91e-25 101
MS.gene026886.t1 AT5G01900 32.487 197 101 4 13 209 6 170 3.01e-23 96.7
MS.gene026886.t1 AT1G66560 60.294 68 26 1 149 215 103 170 3.46e-22 93.6
MS.gene026886.t1 AT1G66600 42.857 112 48 3 148 243 102 213 3.86e-22 93.2
MS.gene026886.t1 AT1G66550 55.882 68 29 1 149 215 103 170 1.70e-20 89.0
MS.gene026886.t1 AT1G66550 55.882 68 29 1 149 215 108 175 2.27e-20 88.6
MS.gene026886.t1 AT4G11070 29.936 157 101 2 61 208 44 200 1.91e-19 87.0
MS.gene026886.t1 AT2G46400 30.612 196 99 6 13 208 5 163 2.36e-19 86.7
MS.gene026886.t1 AT1G80590 41.379 87 51 0 128 214 64 150 4.78e-19 84.7
MS.gene026886.t1 AT2G40750 31.068 206 130 6 13 210 12 213 1.31e-18 85.1
MS.gene026886.t1 AT4G11070 29.648 199 105 4 10 208 5 168 3.04e-18 83.2
MS.gene026886.t1 AT4G23810 28.856 201 111 5 89 260 91 288 6.09e-18 83.2
MS.gene026886.t1 AT5G24110 33.987 153 73 3 63 208 41 172 7.34e-17 79.7
MS.gene026886.t1 AT2G40740 52.381 63 30 0 149 211 173 235 1.33e-16 79.0
MS.gene026886.t1 AT2G40740 52.381 63 30 0 149 211 182 244 1.68e-16 78.6
MS.gene026886.t1 AT2G46130 53.030 66 26 2 142 206 23 84 9.60e-15 69.7
MS.gene026886.t1 AT4G39410 42.553 94 48 3 125 215 196 286 2.12e-14 72.8
MS.gene026886.t1 AT4G18170 41.379 87 48 1 120 206 143 226 3.12e-14 72.4
MS.gene026886.t1 AT5G49520 53.333 60 25 1 148 207 220 276 4.25e-14 72.4
MS.gene026886.t1 AT2G44745 43.902 82 40 2 128 206 121 199 6.34e-14 70.1
MS.gene026886.t1 AT1G64000 51.667 60 26 1 147 206 112 168 7.63e-14 69.3
MS.gene026886.t1 AT5G41570 38.636 88 48 2 122 206 68 152 1.69e-13 68.2
MS.gene026886.t1 AT2G37260 50.847 59 26 1 148 206 348 403 1.75e-13 70.9
MS.gene026886.t1 AT2G37260 50.847 59 26 1 148 206 266 321 2.06e-13 70.1
MS.gene026886.t1 AT2G37260 50.847 59 26 1 148 206 268 323 2.15e-13 70.1
MS.gene026886.t1 AT2G47260 39.773 88 50 1 120 207 145 229 2.78e-13 69.7
MS.gene026886.t1 AT1G29860 41.000 100 54 2 109 206 94 190 3.03e-13 69.3
MS.gene026886.t1 AT1G69310 49.153 59 27 1 148 206 146 201 5.02e-13 68.6
MS.gene026886.t1 AT1G69310 49.153 59 27 1 148 206 146 201 5.02e-13 68.6
MS.gene026886.t1 AT1G69310 49.153 59 27 1 148 206 146 201 5.02e-13 68.6
MS.gene026886.t1 AT1G13960 50.000 60 27 1 147 206 407 463 7.38e-13 69.3
MS.gene026886.t1 AT2G03340 50.000 60 27 1 147 206 413 469 1.44e-12 68.2
MS.gene026886.t1 AT1G13960 50.000 60 27 1 147 206 254 310 1.68e-12 67.8
MS.gene026886.t1 AT5G46350 47.692 65 31 1 142 206 176 237 1.74e-12 67.4
MS.gene026886.t1 AT5G13080 49.180 61 28 1 147 207 65 122 2.76e-12 63.9
MS.gene026886.t1 AT4G26640 40.000 100 49 4 147 240 339 433 3.49e-12 67.0
MS.gene026886.t1 AT4G26640 40.000 100 49 4 147 240 307 401 4.02e-12 67.0
MS.gene026886.t1 AT4G26640 40.000 100 49 4 147 240 379 473 4.18e-12 67.0
MS.gene026886.t1 AT2G04880 45.902 61 29 2 146 206 108 164 4.42e-12 66.6
MS.gene026886.t1 AT2G04880 46.667 60 29 1 147 206 281 337 3.28e-11 63.9
MS.gene026886.t1 AT4G26640 40.000 100 49 4 147 240 203 297 5.18e-12 66.2
MS.gene026886.t1 AT4G26640 40.000 100 49 4 147 240 203 297 5.18e-12 66.2
MS.gene026886.t1 AT4G26640 40.000 100 49 4 147 240 203 297 5.18e-12 66.2
MS.gene026886.t1 AT4G26640 40.000 100 49 4 147 240 203 297 5.18e-12 66.2
MS.gene026886.t1 AT2G04880 45.902 61 29 2 146 206 108 164 5.21e-12 66.6
MS.gene026886.t1 AT2G04880 46.667 60 29 1 147 206 305 361 4.59e-11 63.5
MS.gene026886.t1 AT2G23320 34.188 117 71 2 94 206 181 295 7.53e-12 65.5
MS.gene026886.t1 AT3G01970 47.541 61 29 1 147 207 63 120 1.87e-11 61.6
MS.gene026886.t1 AT5G26170 40.278 72 35 2 146 217 110 173 2.11e-11 62.0
MS.gene026886.t1 AT4G26440 50.000 58 25 2 149 206 178 231 4.66e-11 63.9
MS.gene026886.t1 AT2G30590 36.145 83 51 1 124 206 288 368 5.66e-11 63.2
MS.gene026886.t1 AT3G01080 46.154 65 32 1 142 206 337 398 6.98e-11 63.2
MS.gene026886.t1 AT3G01080 46.154 65 32 1 142 206 299 360 9.32e-11 62.8
MS.gene026886.t1 AT3G62340 48.333 60 28 1 148 207 117 173 9.67e-11 61.6

Find 52 sgRNAs with CRISPR-Local

Find 112 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCTTCAGCAACAATATTTA+AGG 0.169221 2.3:+21137796 None:intergenic
CTTTGGCTTCCAACAAATTA+TGG 0.175004 2.3:-21137953 MS.gene026886:CDS
TTACCATTCAGACTTAAATT+TGG 0.184409 2.3:-21135594 MS.gene026886:CDS
AGATATATACCTGAAATATT+TGG 0.232157 2.3:+21135877 None:intergenic
TAAGATGAAGGAGGAGGATT+TGG 0.258950 2.3:-21137651 MS.gene026886:CDS
TCACAAATGCCAAATATTTC+AGG 0.281113 2.3:-21135886 MS.gene026886:intron
TCAAATATTAGAGAAGTTAA+AGG 0.289246 2.3:-21137848 MS.gene026886:CDS
AGAGTCATCAGAGGAGAAAA+TGG 0.295638 2.3:+21135568 None:intergenic
AAACATCAAAATCGCATAAC+TGG 0.325641 2.3:+21135384 None:intergenic
AATCCTCCTCCTTCATCTTA+TGG 0.329589 2.3:+21137654 None:intergenic
ATAACCATCATCAATCAATT+TGG 0.330019 2.3:+21135937 None:intergenic
TCCAACAAATTATGGCAAAA+AGG 0.332872 2.3:-21137945 MS.gene026886:CDS
TTGTACCGGACTACATATTA+TGG 0.352265 2.3:-21135638 MS.gene026886:CDS
GATTCTCCGGTGAGAACAAT+TGG 0.405307 2.3:+21135408 None:intergenic
TATAGGAACCGCCACATCAT+TGG 0.416491 2.3:+21137709 None:intergenic
TCTTCAGCAACAATATTTAA+GGG 0.422613 2.3:+21137797 None:intergenic
AGTAATCAAGAATATCCGTT+TGG 0.452427 2.3:-21135512 MS.gene026886:CDS
ATATAATGGAGAATATGCTT+TGG 0.459020 2.3:-21137970 None:intergenic
CAAATATTAGAGAAGTTAAA+GGG 0.464900 2.3:-21137847 MS.gene026886:CDS
ATTCCAAATTTAAGTCTGAA+TGG 0.467467 2.3:+21135591 None:intergenic
GCCTCCAAATTGATTGATGA+TGG 0.475537 2.3:-21135941 MS.gene026886:CDS
AACTAATTGCCATAAGATGA+AGG 0.480574 2.3:-21137663 MS.gene026886:CDS
CCACTTCTTGCATCTACAAA+CGG 0.482853 2.3:-21135473 MS.gene026886:CDS
AAGATGAAGGAGGAGGATTT+GGG 0.487137 2.3:-21137650 MS.gene026886:CDS
ATGTATGCAGGAGCTACTAT+AGG 0.489699 2.3:-21135730 MS.gene026886:intron
TCATGATGTATCTCTTCCTT+AGG 0.501188 2.3:+21135446 None:intergenic
TCGCATAACTGGAGATTCTC+CGG 0.520000 2.3:+21135395 None:intergenic
AAAAGAACCCTTCGTTGTAC+CGG 0.521119 2.3:-21135652 MS.gene026886:CDS
ATCTACAAACGGAGATCCTA+AGG 0.526669 2.3:-21135462 MS.gene026886:CDS
TAGGTCAAGTGCACCAACTT+GGG 0.530587 2.3:-21135972 MS.gene026886:CDS
TTAGGTCAAGTGCACCAACT+TGG 0.536533 2.3:-21135973 MS.gene026886:intron
ACCATCATCAATCAATTTGG+AGG 0.542680 2.3:+21135940 None:intergenic
GATGACCATAATATGTAGTC+CGG 0.554702 2.3:+21135633 None:intergenic
GGTTATACATGGAGAAAGTA+CGG 0.556459 2.3:-21135920 MS.gene026886:CDS
ATGTAGTCCGGTACAACGAA+GGG 0.569798 2.3:+21135645 None:intergenic
TGATTGATGATGGTTATACA+TGG 0.570958 2.3:-21135931 MS.gene026886:CDS
TTGCCATAAGATGAAGGAGG+AGG 0.573073 2.3:-21137657 MS.gene026886:CDS
TGCACCAACTTGGGAAAAGA+CGG 0.575025 2.3:-21135963 MS.gene026886:CDS
TCAAAACCAATTGTTCTCAC+CGG 0.575943 2.3:-21135414 MS.gene026886:CDS
ATGAAGGAGGAGGATTTGGG+TGG 0.585719 2.3:-21137647 MS.gene026886:CDS
AATGGTGGTGACTGTCCAAA+CGG 0.615715 2.3:+21135497 None:intergenic
CCGTTTGTAGATGCAAGAAG+TGG 0.617465 2.3:+21135473 None:intergenic
TGCTGAAGATCTTGTGCGTG+AGG 0.635228 2.3:-21137783 MS.gene026886:CDS
GCTTATGAGAGGACGTGACA+TGG 0.640238 2.3:-21137909 MS.gene026886:CDS
TATGTAGTCCGGTACAACGA+AGG 0.640543 2.3:+21135644 None:intergenic
TGGTAAAGACTCCAATGATG+TGG 0.645157 2.3:-21137720 MS.gene026886:CDS
TAATATAGAAGAGTCATCAG+AGG 0.645563 2.3:+21135559 None:intergenic
ATGGAAGATGAGCTTATGAG+AGG 0.648590 2.3:-21137920 MS.gene026886:CDS
GTAGATGCAAGAAGTGGCAA+TGG 0.654729 2.3:+21135479 None:intergenic
GATGCAAGAAGTGGCAATGG+TGG 0.680588 2.3:+21135482 None:intergenic
TAAAGACTCCAATGATGTGG+CGG 0.681692 2.3:-21137717 MS.gene026886:CDS
TAATTGCCATAAGATGAAGG+AGG 0.755735 2.3:-21137660 MS.gene026886:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTTATAATATCAAACA+AGG - chr2.3:21135833-21135852 MS.gene026886:intron 10.0%
!! ATAAAATTTAATATGTATGC+AGG - chr2.3:21137554-21137573 MS.gene026886:intron 15.0%
!! ATATGAAAATTAATATAGTG+AGG + chr2.3:21135807-21135826 None:intergenic 15.0%
!! ATCAATCTTATAACTTAATT+TGG + chr2.3:21135932-21135951 None:intergenic 15.0%
!! TTAACTTTGTAAGTATAAAA+TGG + chr2.3:21136942-21136961 None:intergenic 15.0%
!! TTATATTTACGTAGTATAAT+TGG - chr2.3:21137262-21137281 MS.gene026886:intron 15.0%
!!! ATATAATTTTTTTTCAGTCT+AGG + chr2.3:21137051-21137070 None:intergenic 15.0%
!!! TATAATTTTTTTTCAGTCTA+GGG + chr2.3:21137050-21137069 None:intergenic 15.0%
!!! TATATTTTTGTCTTCATATT+AGG - chr2.3:21137305-21137324 MS.gene026886:intron 15.0%
!! AAAATAATTCATGCAATCAT+GGG - chr2.3:21136785-21136804 MS.gene026886:intron 20.0%
!! AGATATATACCTGAAATATT+TGG + chr2.3:21137422-21137441 None:intergenic 20.0%
!! CAAATATTAGAGAAGTTAAA+GGG - chr2.3:21135449-21135468 MS.gene026886:CDS 20.0%
!! CAAATTAGAATGTTTGTTTA+GGG - chr2.3:21136337-21136356 MS.gene026886:intron 20.0%
!! GAAAAATCTTTAACAGTTAT+AGG + chr2.3:21135607-21135626 None:intergenic 20.0%
!! TAAACAAACATTCTAATTTG+AGG + chr2.3:21136337-21136356 None:intergenic 20.0%
!! TCAAATATTAGAGAAGTTAA+AGG - chr2.3:21135448-21135467 MS.gene026886:CDS 20.0%
!! TCAAATTAGAATGTTTGTTT+AGG - chr2.3:21136336-21136355 MS.gene026886:intron 20.0%
!! TTGTAAGTATAAAATGGTTT+GGG + chr2.3:21136936-21136955 None:intergenic 20.0%
!! TTTGTAAGTATAAAATGGTT+TGG + chr2.3:21136937-21136956 None:intergenic 20.0%
!!! ATAATTTTTTTTCAGTCTAG+GGG + chr2.3:21137049-21137068 None:intergenic 20.0%
!!! GTTTAAAACTTTAGAACATT+TGG + chr2.3:21135869-21135888 None:intergenic 20.0%
! ATAACCATCATCAATCAATT+TGG + chr2.3:21137362-21137381 None:intergenic 25.0%
! ATATGATCATCATTACTCAA+TGG - chr2.3:21137178-21137197 MS.gene026886:intron 25.0%
! ATCTTCAGCAACAATATTTA+AGG + chr2.3:21135503-21135522 None:intergenic 25.0%
! ATGATGATCATATATATGTC+TGG + chr2.3:21137171-21137190 None:intergenic 25.0%
! ATTCCAAATTTAAGTCTGAA+TGG + chr2.3:21137708-21137727 None:intergenic 25.0%
! ATTTGAATGTTACAGATTGA+TGG + chr2.3:21137519-21137538 None:intergenic 25.0%
! GAAAATAATTCATGCAATCA+TGG - chr2.3:21136784-21136803 MS.gene026886:intron 25.0%
! GAAACAAGTCAAATACTTAT+AGG + chr2.3:21135768-21135787 None:intergenic 25.0%
! TAGGAACATAGTATAAAACA+TGG + chr2.3:21135749-21135768 None:intergenic 25.0%
! TCTTCAGCAACAATATTTAA+GGG + chr2.3:21135502-21135521 None:intergenic 25.0%
! TTACCATTCAGACTTAAATT+TGG - chr2.3:21137702-21137721 MS.gene026886:CDS 25.0%
! TTGAGATTTAATTAGAGCTA+TGG + chr2.3:21136975-21136994 None:intergenic 25.0%
! TTTACTTCCATGTTTGTTTA+GGG - chr2.3:21136276-21136295 MS.gene026886:intron 25.0%
!! TTTTACTTCCATGTTTGTTT+AGG - chr2.3:21136275-21136294 MS.gene026886:intron 25.0%
!!! AAGTATTTGACTTGTTTCAA+AGG - chr2.3:21135770-21135789 MS.gene026886:intron 25.0%
!!! TCGTTAACTTGTCTTTTTAA+GGG + chr2.3:21137086-21137105 None:intergenic 25.0%
!!! TTCGTTAACTTGTCTTTTTA+AGG + chr2.3:21137087-21137106 None:intergenic 25.0%
AAACATCAAAATCGCATAAC+TGG + chr2.3:21137915-21137934 None:intergenic 30.0%
AAATTATGGCAAAAAGGCAA+TGG - chr2.3:21135357-21135376 MS.gene026886:CDS 30.0%
AACTAATTGCCATAAGATGA+AGG - chr2.3:21135633-21135652 MS.gene026886:CDS 30.0%
ACAAAAACCCTAAACAAACA+TGG + chr2.3:21136286-21136305 None:intergenic 30.0%
ACAAACATTCTAATTTGAGG+TGG + chr2.3:21136334-21136353 None:intergenic 30.0%
AGTAATCAAGAATATCCGTT+TGG - chr2.3:21137784-21137803 MS.gene026886:CDS 30.0%
ATGATCATATATATGTCTGG+AGG + chr2.3:21137168-21137187 None:intergenic 30.0%
TAATATAGAAGAGTCATCAG+AGG + chr2.3:21137740-21137759 None:intergenic 30.0%
TCAACTTTCAATCTCAAGTT+TGG - chr2.3:21136887-21136906 MS.gene026886:intron 30.0%
TCACAAATGCCAAATATTTC+AGG - chr2.3:21137410-21137429 MS.gene026886:intron 30.0%
TCCAACAAATTATGGCAAAA+AGG - chr2.3:21135351-21135370 MS.gene026886:CDS 30.0%
TGGATAATTCATGTGAGATT+GGG - chr2.3:21136907-21136926 MS.gene026886:intron 30.0%
TTGGATAATTCATGTGAGAT+TGG - chr2.3:21136906-21136925 MS.gene026886:intron 30.0%
!! TGATTGATGATGGTTATACA+TGG - chr2.3:21137365-21137384 MS.gene026886:intron 30.0%
AAGAAGGAAGAAAAACCAGT+TGG + chr2.3:21136238-21136257 None:intergenic 35.0%
ACCATCATCAATCAATTTGG+AGG + chr2.3:21137359-21137378 None:intergenic 35.0%
GATGACCATAATATGTAGTC+CGG + chr2.3:21137666-21137685 None:intergenic 35.0%
GGTTATACATGGAGAAAGTA+CGG - chr2.3:21137376-21137395 MS.gene026886:intron 35.0%
TAATTGCCATAAGATGAAGG+AGG - chr2.3:21135636-21135655 MS.gene026886:CDS 35.0%
TCAAAACCAATTGTTCTCAC+CGG - chr2.3:21137882-21137901 MS.gene026886:CDS 35.0%
TCATGATGTATCTCTTCCTT+AGG + chr2.3:21137853-21137872 None:intergenic 35.0%
TTGTACCGGACTACATATTA+TGG - chr2.3:21137658-21137677 MS.gene026886:CDS 35.0%
! CTTTGGCTTCCAACAAATTA+TGG - chr2.3:21135343-21135362 MS.gene026886:CDS 35.0%
! GGTTTTTCTTCCTTCTTTGT+CGG - chr2.3:21136241-21136260 MS.gene026886:intron 35.0%
! GTTTTTCTTCCTTCTTTGTC+GGG - chr2.3:21136242-21136261 MS.gene026886:intron 35.0%
!! GCCTTTTTGCCATAATTTGT+TGG + chr2.3:21135355-21135374 None:intergenic 35.0%
!! TTTTAATTCACAGCACAGCT+AGG - chr2.3:21137142-21137161 MS.gene026886:intron 35.0%
!!! ACACTTTTGCTGTTGAACAA+TGG - chr2.3:21135556-21135575 MS.gene026886:CDS 35.0%
!!! ATTTTTTTTCAGTCTAGGGG+AGG + chr2.3:21137046-21137065 None:intergenic 35.0%
!!! TTTTTTTTCAGTCTAGGGGA+GGG + chr2.3:21137045-21137064 None:intergenic 35.0%
AAAAGAACCCTTCGTTGTAC+CGG - chr2.3:21137644-21137663 MS.gene026886:CDS 40.0%
AAGATGAAGGAGGAGGATTT+GGG - chr2.3:21135646-21135665 MS.gene026886:CDS 40.0%
AAGGAAGAAAAACCAGTTGG+CGG + chr2.3:21136235-21136254 None:intergenic 40.0%
AATCCTCCTCCTTCATCTTA+TGG + chr2.3:21135645-21135664 None:intergenic 40.0%
AGAGTCATCAGAGGAGAAAA+TGG + chr2.3:21137731-21137750 None:intergenic 40.0%
ATCTACAAACGGAGATCCTA+AGG - chr2.3:21137834-21137853 MS.gene026886:CDS 40.0%
ATGGAAGATGAGCTTATGAG+AGG - chr2.3:21135376-21135395 MS.gene026886:CDS 40.0%
ATGTATGCAGGAGCTACTAT+AGG - chr2.3:21137566-21137585 MS.gene026886:intron 40.0%
CCACTTCTTGCATCTACAAA+CGG - chr2.3:21137823-21137842 MS.gene026886:CDS 40.0%
GACAATTTACCCGACAAAGA+AGG + chr2.3:21136254-21136273 None:intergenic 40.0%
GCCTCCAAATTGATTGATGA+TGG - chr2.3:21137355-21137374 MS.gene026886:intron 40.0%
TAAAGACTCCAATGATGTGG+CGG - chr2.3:21135579-21135598 MS.gene026886:CDS 40.0%
TAAGATGAAGGAGGAGGATT+TGG - chr2.3:21135645-21135664 MS.gene026886:CDS 40.0%
TGGTAAAGACTCCAATGATG+TGG - chr2.3:21135576-21135595 MS.gene026886:CDS 40.0%
!! GTGGTTTTTGTTTCTCTCTC+TGG + chr2.3:21136315-21136334 None:intergenic 40.0%
!!! GGTGAGAACAATTGGTTTTG+AGG + chr2.3:21137883-21137902 None:intergenic 40.0%
!!! GTTCGACACTTTCGAGTTTT+TGG + chr2.3:21135704-21135723 None:intergenic 40.0%
!!! TTTTTTTCAGTCTAGGGGAG+GGG + chr2.3:21137044-21137063 None:intergenic 40.0%
ATGTAGTCCGGTACAACGAA+GGG + chr2.3:21137654-21137673 None:intergenic 45.0%
CCGTTTGTAGATGCAAGAAG+TGG + chr2.3:21137826-21137845 None:intergenic 45.0%
GAGGAGAGGGAGAAAAATGA+AGG + chr2.3:21136213-21136232 None:intergenic 45.0%
GATTCTCCGGTGAGAACAAT+TGG + chr2.3:21137891-21137910 None:intergenic 45.0%
GTAGATGCAAGAAGTGGCAA+TGG + chr2.3:21137820-21137839 None:intergenic 45.0%
TAGGTCAAGTGCACCAACTT+GGG - chr2.3:21137324-21137343 MS.gene026886:intron 45.0%
TATAGGAACCGCCACATCAT+TGG + chr2.3:21135590-21135609 None:intergenic 45.0%
TATGTAGTCCGGTACAACGA+AGG + chr2.3:21137655-21137674 None:intergenic 45.0%
TCGCATAACTGGAGATTCTC+CGG + chr2.3:21137904-21137923 None:intergenic 45.0%
TGCACCAACTTGGGAAAAGA+CGG - chr2.3:21137333-21137352 MS.gene026886:intron 45.0%
TTAGGTCAAGTGCACCAACT+TGG - chr2.3:21137323-21137342 MS.gene026886:intron 45.0%
TTGCCATAAGATGAAGGAGG+AGG - chr2.3:21135639-21135658 MS.gene026886:CDS 45.0%
! AATGGTGGTGACTGTCCAAA+CGG + chr2.3:21137802-21137821 None:intergenic 45.0%
!!! TTTTTTCAGTCTAGGGGAGG+GGG + chr2.3:21137043-21137062 None:intergenic 45.0%
!! ATGTATATATATATATATAT+CGG + chr2.3:21136018-21136037 None:intergenic 5.0%
!!! GAATTTATTTAATATTTTAT+AGG + chr2.3:21137005-21137024 None:intergenic 5.0%
ATGAAGGAGGAGGATTTGGG+TGG - chr2.3:21135649-21135668 MS.gene026886:CDS 50.0%
GAAGAAAAACCAGTTGGCGG+AGG + chr2.3:21136232-21136251 None:intergenic 50.0%
GATGCAAGAAGTGGCAATGG+TGG + chr2.3:21137817-21137836 None:intergenic 50.0%
GCTTATGAGAGGACGTGACA+TGG - chr2.3:21135387-21135406 MS.gene026886:CDS 50.0%
TGCTGAAGATCTTGTGCGTG+AGG - chr2.3:21135513-21135532 MS.gene026886:CDS 50.0%
AAAACCAGTTGGCGGAGGAG+AGG + chr2.3:21136227-21136246 None:intergenic 55.0%
AAACCAGTTGGCGGAGGAGA+GGG + chr2.3:21136226-21136245 None:intergenic 55.0%
! GAGGCCGTCTTTTCCCAAGT+TGG + chr2.3:21137340-21137359 None:intergenic 55.0%
CAGTCTAGGGGAGGGGGATT+TGG + chr2.3:21137037-21137056 None:intergenic 60.0%
TCTCCCTCTCCTCCGCCAAC+TGG - chr2.3:21136220-21136239 MS.gene026886:intron 65.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 21135331 21137987 21135331 ID=MS.gene026886
chr2.3 mRNA 21135331 21137987 21135331 ID=MS.gene026886.t1;Parent=MS.gene026886
chr2.3 exon 21137587 21137987 21137587 ID=MS.gene026886.t1.exon1;Parent=MS.gene026886.t1
chr2.3 CDS 21137587 21137987 21137587 ID=cds.MS.gene026886.t1;Parent=MS.gene026886.t1
chr2.3 exon 21135887 21135991 21135887 ID=MS.gene026886.t1.exon2;Parent=MS.gene026886.t1
chr2.3 CDS 21135887 21135991 21135887 ID=cds.MS.gene026886.t1;Parent=MS.gene026886.t1
chr2.3 exon 21135331 21135742 21135331 ID=MS.gene026886.t1.exon3;Parent=MS.gene026886.t1
chr2.3 CDS 21135331 21135742 21135331 ID=cds.MS.gene026886.t1;Parent=MS.gene026886.t1
Gene Sequence

>MS.gene026886

ATGGAGAATATGCTTTGGCTTCCAACAAATTATGGCAAAAAGGCAATGGAAGATGAGCTTATGAGAGGACGTGACATGGCAAATCAATTACTTGAAGTACTAACTTTTGATGATAAGTCAAATATTAGAGAAGTTAAAGGGTCAAACACAAATTCATCAAAAGTGTTACCCTTAAATATTGTTGCTGAAGATCTTGTGCGTGAGGTGCTCAAATCATTGACAAACACACTTTTGCTGTTGAACAATGGTAAAGACTCCAATGATGTGGCGGTTCCTATAACTGTTAAAGATTTTTCTTTTTCAACTAATTGCCATAAGATGAAGGAGGAGGATTTGGGTGGAGCTTGCAAGAAACTCAAAACTCTCAACACCAAAAACTCGAAAGTGTCGAACAAGAGAAAGTAAGAATCTTTATCCATGTTTTATACTATGTTCCTATAAGTATTTGACTTGTTTCAAAGGTTTTTTTTTTTCCTCACTATATTAATTTTCATATTATTTGTATTTTTATAATATCAAACAAGGATTTCTGTTTCCAAATGTTCTAAAGTTTTAAACATGTACAAAACTTAGCTAGATTCAACAATAATCTTGATATCCAAATTAAGTTATAAGATTGATTTTTGAATCAACAGTCAATTATGTCATTAATCTAATAGAAAATTTTGCAATTTCTCTCTTTCTCCGATATATATATATATATACATACACACATATTATATATATATATATATATGTACACACACACACACACACACACACACACACACACACACACACACATATATATATATATATATATATATATATATATATATATATACATACATACATAGACATATATGTGTAAATAATTTAGTACAACTTTATTTTCTAAATCCTTCATTTTTCTCCCTCTCCTCCGCCAACTGGTTTTTCTTCCTTCTTTGTCGGGTAAATTGTCGTTTTACTTCCATGTTTGTTTAGGGTTTTTGTGAAAAACCAGAGAGAGAAACAAAAACCACCTCAAATTAGAATGTTTGTTTAGGGTTTTTATTAATATTCACACACACACACACACACACAGATATATATATATATATATATATATATATATATATATATATATATATATATACATATACATATATATATATATATATACATATATATATATATATATACATATATATATATATATATATATACATATATATATATATATATACACATATATGTGTAAATAATTTAGTACAACTTTATTTTCTAAATCCTTCATTTTTCTCCCTCTCCTCCGCCAACTGGTTTTTCTTCCTTCTTTGTCGGGTAAATTGTCGTTTTACTTCCATGTTTGTTTAGGGTTTTTGTGAAAAACCAGAGAGAGAAACAAAAACCACCTCAAATTAGAATGTTTGTTTAGGGTTTTTATTAATATTGTTATTTTTCTATAAAAAATTATATTAATTCTTAAAATGAAAATAATTCATGCAATCATGGGCATATATTTACGAAATTGATATAAATATATATATATATATATATATATATATATATATATATTATATCTATATATAATATCAACTTTCAATCTCAAGTTTGGATAATTCATGTGAGATTGGGTAACCCAAACCATTTTATACTTACAAAGTTAATATAAATTGACCATAGCTCTAATTAAATCTCAAACTCTTTCCTATAAAATATTAAATAAATTCTTATATTGTCCAAATCCCCCTCCCCTAGACTGAAAAAAAATTATATACTATGTCTGTACCCTTAAAAAGACAAGTTAACGAAATAAAAAAATGTATGATGCACGTAGATCTTCATAATTTTAATTCACAGCACAGCTAGGCCTCCAGACATATATATGATCATCATTACTCAATGGAAGCATATATCGATCTATTAATATTTTATAAATATTTTCGTCAATTTTATTAATTAATTTATTATATTTACGTAGTATAATTGGATATAAATCATTCATTAACATATATTTTTGTCTTCATATTAGGTCAAGTGCACCAACTTGGGAAAAGACGGCCTCCAAATTGATTGATGATGGTTATACATGGAGAAAGTACGGTCAAAAAATGATCACAAATGCCAAATATTTCAGGTATATATCTATAGTGCAAATTCAGATAAGAATAAATATTAGTCAACATTATACACTAATGTGATAATTTTAATGTGTTAGATTCCATCAATCTGTAACATTCAAATTAAAAATTAATATAGATAAAATTTAATATGTATGCAGGAGCTACTATAGGTGCACTCACATGAATGATCAACAATGTGAAGCAATCAAACATGTTCAAAGAATACAAAAGAACCCTTCGTTGTACCGGACTACATATTATGGTCATCACACTTGCAAAAGCTCTTACCATTCAGACTTAAATTTGGAATCCATTTTCTCCTCTGATGACTCTTCTATATTACTTAGTTTCGATAACAACATTTCAAGTAATCAAGAATATCCGTTTGGACAGTCACCACCATTGCCACTTCTTGCATCTACAAACGGAGATCCTAAGGAAGAGATACATCATGATCATTTTCCTCAAAACCAATTGTTCTCACCGGAGAATCTCCAGTTATGCGATTTTGATGTTTATTTTGATTATTTGAGACATGTCACTGAGTCATCATCGAGTGAATCTTTTTAA
Protein sequence

>MS.gene026886.t1

MENMLWLPTNYGKKAMEDELMRGRDMANQLLEVLTFDDKSNIREVKGSNTNSSKVLPLNIVAEDLVREVLKSLTNTLLLLNNGKDSNDVAVPITVKDFSFSTNCHKMKEEDLGGACKKLKTLNTKNSKVSNKRKSSAPTWEKTASKLIDDGYTWRKYGQKMITNAKYFRSYYRCTHMNDQQCEAIKHVQRIQKNPSLYRTTYYGHHTCKSSYHSDLNLESIFSSDDSSILLSFDNNISSNQEYPFGQSPPLPLLASTNGDPKEEIHHDHFPQNQLFSPENLQLCDFDVYFDYLRHVTESSSSESF