AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene026918

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene026918.t1 MTR_2g073650 92.063 63 5 0 1 63 831 893 8.15e-36 126
MS.gene026918.t1 MTR_2g074820 93.651 63 4 0 1 63 305 367 1.98e-35 123
MS.gene026918.t1 MTR_2g073640 92.063 63 5 0 1 63 838 900 7.11e-35 124
MS.gene026918.t1 MTR_2g074990 90.476 63 6 0 1 63 821 883 1.52e-34 123
MS.gene026918.t1 MTR_2g075060 87.302 63 8 0 1 63 831 893 3.02e-34 122
MS.gene026918.t1 MTR_2g075010 90.476 63 6 0 1 63 823 885 3.89e-34 121
MS.gene026918.t1 MTR_2g074840 88.889 63 7 0 1 63 832 894 4.05e-34 121
MS.gene026918.t1 MTR_2g074980 87.302 63 8 0 1 63 799 861 1.45e-33 120
MS.gene026918.t1 MTR_2g074870 79.365 63 13 0 1 63 398 460 4.89e-29 107
MS.gene026918.t1 MTR_5g091950 73.016 63 17 0 1 63 847 909 3.53e-28 104
MS.gene026918.t1 MTR_5g091950 73.016 63 17 0 1 63 757 819 3.85e-28 104
MS.gene026918.t1 MTR_5g091950 73.016 63 17 0 1 63 712 774 4.00e-28 104
MS.gene026918.t1 MTR_5g083910 73.016 63 17 0 1 63 829 891 1.23e-27 103
MS.gene026918.t1 MTR_5g083910 73.016 63 17 0 1 63 697 759 1.53e-27 103
MS.gene026918.t1 MTR_2g075250 74.603 63 16 0 1 63 835 897 1.97e-27 102
MS.gene026918.t1 MTR_2g073630 71.429 63 18 0 1 63 797 859 1.99e-27 102
MS.gene026918.t1 MTR_2g075250 74.603 63 16 0 1 63 740 802 2.74e-27 102
MS.gene026918.t1 MTR_8g059615 73.016 63 17 0 1 63 812 874 6.36e-26 98.6
MS.gene026918.t1 MTR_2g073520 65.079 63 22 0 1 63 701 763 1.68e-25 97.4
MS.gene026918.t1 MTR_8g059605 71.429 63 18 0 1 63 829 891 1.68e-25 97.4
MS.gene026918.t1 MTR_8g059605 71.429 63 18 0 1 63 634 696 2.76e-25 96.7
MS.gene026918.t1 MTR_2g073540 65.079 63 22 0 1 63 595 657 3.10e-25 96.7
MS.gene026918.t1 MTR_8g058250 68.254 63 20 0 1 63 737 799 4.49e-25 95.9
MS.gene026918.t1 MTR_8g058250 68.254 63 20 0 1 63 833 895 4.50e-25 95.9
MS.gene026918.t1 MTR_2g073600 65.079 63 22 0 1 63 831 893 3.44e-24 93.6
MS.gene026918.t1 MTR_2g073560 65.079 63 22 0 1 63 807 869 3.68e-24 93.6
MS.gene026918.t1 MTR_8g057660 68.254 63 16 1 1 63 215 273 1.28e-22 87.8
MS.gene026918.t1 MTR_8g461110 60.317 63 25 0 1 63 856 918 5.61e-20 81.6
MS.gene026918.t1 MTR_8g058250 72.917 48 13 0 1 48 833 880 2.69e-19 79.7
MS.gene026918.t1 MTR_2g073520 70.833 48 14 0 1 48 833 880 3.67e-19 79.3
MS.gene026918.t1 MTR_8g445800 57.143 63 27 0 1 63 868 930 1.72e-18 77.4
MS.gene026918.t1 MTR_8g445800 57.143 63 27 0 1 63 670 732 1.96e-18 77.0
MS.gene026918.t1 MTR_8g445800 57.143 63 27 0 1 63 723 785 2.19e-18 77.0
MS.gene026918.t1 MTR_8g087740 52.381 63 30 0 1 63 838 900 2.53e-15 68.2
MS.gene026918.t1 MTR_1g031780 50.000 66 27 2 1 63 220 282 2.93e-15 68.2
MS.gene026918.t1 MTR_3g064110 55.556 63 27 1 2 63 509 571 3.11e-15 68.2
MS.gene026918.t1 MTR_2g011230 46.032 63 34 0 1 63 685 747 5.78e-15 67.4
MS.gene026918.t1 MTR_3g064090 51.613 62 30 0 2 63 497 558 1.20e-14 66.2
MS.gene026918.t1 MTR_7g068190 52.381 63 30 0 1 63 213 275 1.20e-14 66.2
MS.gene026918.t1 MTR_8g461260 53.968 63 29 0 1 63 215 277 1.51e-14 65.9
MS.gene026918.t1 MTR_2g011240 44.444 63 35 0 1 63 672 734 3.19e-14 65.1
MS.gene026918.t1 MTR_0148s0080 46.032 63 34 0 1 63 880 942 9.20e-14 63.9
MS.gene026918.t1 MTR_8g013560 46.032 63 34 0 1 63 678 740 1.55e-13 63.2
MS.gene026918.t1 MTR_2g064940 50.794 63 31 0 1 63 212 274 1.96e-13 62.8
MS.gene026918.t1 MTR_6g083980 49.206 63 32 0 1 63 218 280 2.02e-13 62.8
MS.gene026918.t1 MTR_4g126930 50.000 62 31 0 2 63 305 366 2.28e-13 62.8
MS.gene026918.t1 MTR_2g064930 52.381 63 30 0 1 63 217 279 2.33e-13 62.8
MS.gene026918.t1 MTR_7g056590 41.270 63 37 0 1 63 532 594 2.78e-13 62.4
MS.gene026918.t1 MTR_2g013210 50.794 63 31 0 1 63 218 280 3.01e-13 62.4
MS.gene026918.t1 MTR_7g056450 41.270 63 37 0 1 63 678 740 3.49e-13 62.4
MS.gene026918.t1 MTR_8g013620 44.444 63 35 0 1 63 635 697 4.04e-13 62.0
MS.gene026918.t1 MTR_8g013620 44.444 63 35 0 1 63 675 737 4.68e-13 62.0
MS.gene026918.t1 MTR_8g051640 44.444 63 35 0 1 63 617 679 5.91e-13 61.6
MS.gene026918.t1 MTR_8g013600 42.857 63 36 0 1 63 652 714 7.06e-13 61.2
MS.gene026918.t1 MTR_3g064080 50.000 62 31 0 2 63 494 555 7.23e-13 61.2
MS.gene026918.t1 MTR_2g038675 48.387 62 32 0 2 63 283 344 7.76e-13 61.2
MS.gene026918.t1 MTR_7g056680 42.857 63 36 0 1 63 510 572 9.52e-13 60.8
MS.gene026918.t1 MTR_7g056680 42.857 63 36 0 1 63 670 732 1.13e-12 60.8
MS.gene026918.t1 MTR_7g056663 38.095 63 39 0 1 63 695 757 1.13e-12 60.8
MS.gene026918.t1 MTR_7g056680 42.857 63 36 0 1 63 666 728 1.16e-12 60.8
MS.gene026918.t1 MTR_7g056680 42.857 63 36 0 1 63 675 737 1.20e-12 60.8
MS.gene026918.t1 MTR_7g056680 42.857 63 36 0 1 63 671 733 1.22e-12 60.8
MS.gene026918.t1 MTR_1g105650 44.444 63 35 0 1 63 523 585 1.35e-12 60.5
MS.gene026918.t1 MTR_8g442270 42.857 63 36 0 1 63 648 710 1.39e-12 60.5
MS.gene026918.t1 MTR_8g463990 50.794 63 31 0 1 63 146 208 1.57e-12 60.1
MS.gene026918.t1 MTR_8g463990 50.794 63 31 0 1 63 156 218 1.61e-12 60.1
MS.gene026918.t1 MTR_8g463990 50.794 63 31 0 1 63 213 275 1.73e-12 60.1
MS.gene026918.t1 MTR_2g089290 42.857 63 36 0 1 63 843 905 1.86e-12 60.1
MS.gene026918.t1 MTR_1g052880 42.857 63 36 0 1 63 876 938 2.10e-12 60.1
MS.gene026918.t1 MTR_8g442310 42.857 63 36 0 1 63 604 666 2.17e-12 60.1
MS.gene026918.t1 MTR_8g013580 44.444 63 35 0 1 63 680 742 2.17e-12 60.1
MS.gene026918.t1 MTR_4g098890 52.174 46 22 0 1 46 1235 1280 2.42e-12 59.7
MS.gene026918.t1 MTR_5g033690 50.943 53 24 1 1 51 479 531 3.10e-12 59.7
MS.gene026918.t1 MTR_8g013610 44.444 63 35 0 1 63 676 738 3.18e-12 59.7
MS.gene026918.t1 MTR_5g005520 46.032 63 34 0 1 63 522 584 3.23e-12 59.7
MS.gene026918.t1 MTR_2g011210 49.206 63 31 1 1 63 696 757 3.41e-12 59.3
MS.gene026918.t1 MTR_1g029610 47.692 65 29 2 1 63 461 522 3.59e-12 59.3
MS.gene026918.t1 MTR_4g091670 41.270 63 37 0 1 63 702 764 4.48e-12 58.9
MS.gene026918.t1 MTR_4g088975 58.000 50 19 2 1 49 216 264 5.20e-12 58.9
MS.gene026918.t1 MTR_7g056667 38.095 63 39 0 1 63 691 753 6.49e-12 58.5
MS.gene026918.t1 MTR_8g442370 42.857 63 36 0 1 63 638 700 6.68e-12 58.5
MS.gene026918.t1 MTR_8g465160 46.032 63 33 1 1 63 688 749 6.89e-12 58.5
MS.gene026918.t1 MTR_4g081685 44.444 63 35 0 1 63 674 736 6.95e-12 58.5
MS.gene026918.t1 MTR_8g088760 43.750 64 35 1 1 63 458 521 7.85e-12 58.5
MS.gene026918.t1 MTR_2g011270 42.857 63 35 1 1 63 675 736 8.05e-12 58.5
MS.gene026918.t1 MTR_4g040480 49.206 63 31 1 1 63 681 742 8.13e-12 58.5
MS.gene026918.t1 MTR_8g465150 46.032 63 33 1 1 63 686 747 8.37e-12 58.2
MS.gene026918.t1 MTR_2g011280 42.857 63 35 1 1 63 695 756 9.60e-12 58.2
MS.gene026918.t1 MTR_1g089570 44.444 63 31 1 1 63 285 343 9.96e-12 58.2
MS.gene026918.t1 MTR_2g011340 42.857 63 35 1 1 63 691 752 1.05e-11 58.2
MS.gene026918.t1 MTR_1g021610 46.032 63 34 0 1 63 521 583 1.06e-11 58.2
MS.gene026918.t1 MTR_2g006910 46.154 65 33 1 1 63 485 549 1.08e-11 58.2
MS.gene026918.t1 MTR_2g006910 46.154 65 33 1 1 63 485 549 1.08e-11 58.2
MS.gene026918.t1 MTR_4g081650 41.270 63 37 0 1 63 668 730 1.11e-11 58.2
MS.gene026918.t1 MTR_4g091570 49.206 63 31 1 1 63 924 985 1.33e-11 57.8
MS.gene026918.t1 MTR_3g011930 42.857 63 36 0 1 63 365 427 1.52e-11 57.8
MS.gene026918.t1 MTR_5g038450 47.619 63 32 1 2 63 314 376 1.55e-11 57.4
MS.gene026918.t1 MTR_8g052200 42.857 63 36 0 1 63 632 694 1.56e-11 57.4
MS.gene026918.t1 MTR_8g052513 42.857 63 36 0 1 63 632 694 1.58e-11 57.4
MS.gene026918.t1 MTR_7g056430 39.683 63 37 1 1 63 1010 1071 1.72e-11 57.4
MS.gene026918.t1 MTR_2g011160 46.032 63 33 1 1 63 702 763 1.85e-11 57.4
MS.gene026918.t1 MTR_7g056623 39.683 63 38 0 1 63 644 706 1.91e-11 57.4
MS.gene026918.t1 MTR_7g009320 46.032 63 33 1 2 63 301 363 1.91e-11 57.4
MS.gene026918.t1 MTR_8g052290 42.857 63 36 0 1 63 259 321 1.94e-11 57.4
MS.gene026918.t1 MTR_8g052060 42.857 63 36 0 1 63 611 673 1.98e-11 57.4
MS.gene026918.t1 MTR_2g011150 42.857 63 36 0 1 63 630 692 2.06e-11 57.4
MS.gene026918.t1 MTR_8g088780 45.312 64 34 1 1 63 489 552 2.11e-11 57.4
MS.gene026918.t1 MTR_8g052570 42.857 63 36 0 1 63 232 294 2.14e-11 57.0
MS.gene026918.t1 MTR_8g052517 42.857 63 36 0 1 63 232 294 2.14e-11 57.0
MS.gene026918.t1 MTR_8g052190 42.857 63 36 0 1 63 646 708 2.18e-11 57.0
MS.gene026918.t1 MTR_8g052190 42.857 63 36 0 1 63 647 709 2.18e-11 57.0
MS.gene026918.t1 MTR_7g056420 39.683 63 37 1 1 63 1010 1071 2.19e-11 57.0
MS.gene026918.t1 MTR_8g101670 49.206 63 32 0 1 63 560 622 2.64e-11 57.0
MS.gene026918.t1 MTR_8g101670 49.206 63 32 0 1 63 572 634 2.64e-11 57.0
MS.gene026918.t1 MTR_8g101670 49.206 63 32 0 1 63 572 634 2.64e-11 57.0
MS.gene026918.t1 MTR_7g033135 47.692 65 28 3 1 63 483 543 2.67e-11 57.0
MS.gene026918.t1 MTR_8g106100 43.750 64 35 1 1 63 749 812 2.74e-11 57.0
MS.gene026918.t1 MTR_7g056640 39.683 63 38 0 1 63 686 748 2.87e-11 57.0
MS.gene026918.t1 MTR_5g065130 54.000 50 22 1 1 49 509 558 2.89e-11 57.0
MS.gene026918.t1 MTR_8g052490 42.857 63 36 0 1 63 233 295 3.02e-11 56.6
MS.gene026918.t1 MTR_8g051600 41.270 63 37 0 1 63 643 705 3.07e-11 56.6
MS.gene026918.t1 MTR_8g061110 44.444 63 34 1 1 63 576 637 3.22e-11 56.6
MS.gene026918.t1 MTR_8g052420 41.270 63 37 0 1 63 635 697 3.49e-11 56.6
MS.gene026918.t1 MTR_4g067230 44.444 63 35 0 1 63 690 752 3.57e-11 56.6
MS.gene026918.t1 MTR_8g041650 42.857 63 36 0 1 63 505 567 4.31e-11 56.2
MS.gene026918.t1 MTR_8g051540 46.875 64 32 2 1 63 650 712 4.41e-11 56.2
MS.gene026918.t1 MTR_7g100500 46.032 63 33 1 2 63 245 307 4.45e-11 56.2
MS.gene026918.t1 MTR_6g012810 42.857 63 36 0 1 63 770 832 5.22e-11 56.2
MS.gene026918.t1 MTR_8g016120 46.032 63 34 0 1 63 573 635 5.31e-11 56.2
MS.gene026918.t1 MTR_2g011180 41.270 63 37 0 1 63 700 762 5.37e-11 56.2
MS.gene026918.t1 MTR_1g021635 44.444 63 35 0 1 63 528 590 6.01e-11 55.8
MS.gene026918.t1 MTR_2g011190 47.619 63 32 1 1 63 692 753 6.34e-11 55.8
MS.gene026918.t1 MTR_7g074610 41.270 63 36 1 2 63 266 328 6.94e-11 55.8
MS.gene026918.t1 MTR_8g052080 42.857 63 36 0 1 63 655 717 6.99e-11 55.8
MS.gene026918.t1 MTR_8g052050 41.270 63 37 0 1 63 654 716 8.67e-11 55.5
MS.gene026918.t1 MTR_7g116130 42.857 63 36 0 1 63 524 586 9.24e-11 55.5
MS.gene026918.t1 MTR_1g104890 44.444 63 35 0 1 63 513 575 9.43e-11 55.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene026918.t1 AT1G53440 73.016 63 17 0 1 63 836 898 3.64e-27 102
MS.gene026918.t1 AT1G53430 73.016 63 17 0 1 63 797 859 4.59e-27 101
MS.gene026918.t1 AT1G53430 73.016 63 17 0 1 63 838 900 4.59e-27 101
MS.gene026918.t1 AT1G07650 71.429 63 18 0 1 63 635 697 2.39e-26 99.8
MS.gene026918.t1 AT1G07650 71.429 63 18 0 1 63 822 884 2.40e-26 99.8
MS.gene026918.t1 AT1G07650 71.429 63 18 0 1 63 848 910 2.40e-26 99.8
MS.gene026918.t1 AT1G07650 71.429 63 18 0 1 63 854 916 2.40e-26 99.8
MS.gene026918.t1 AT3G14840 66.667 63 21 0 1 63 841 903 2.19e-24 94.0
MS.gene026918.t1 AT1G53420 66.667 63 21 0 1 63 793 855 1.25e-23 92.0
MS.gene026918.t1 AT1G29730 59.375 64 25 1 1 63 840 903 3.21e-20 82.4
MS.gene026918.t1 AT1G29730 59.375 64 25 1 1 63 808 871 3.79e-20 82.0
MS.gene026918.t1 AT1G29720 57.143 63 27 0 1 63 840 902 2.79e-19 79.7
MS.gene026918.t1 AT1G56140 58.730 63 26 0 1 63 860 922 4.17e-19 79.0
MS.gene026918.t1 AT1G56130 58.730 63 26 0 1 63 861 923 7.93e-19 78.2
MS.gene026918.t1 AT1G56130 58.730 63 26 0 1 63 713 775 8.39e-19 78.2
MS.gene026918.t1 AT1G56130 58.730 63 26 0 1 63 662 724 8.89e-19 78.2
MS.gene026918.t1 AT1G29740 57.812 64 26 1 1 63 844 907 2.00e-18 77.0
MS.gene026918.t1 AT1G29740 57.812 64 26 1 1 63 844 907 2.12e-18 77.0
MS.gene026918.t1 AT1G56120 57.143 63 27 0 1 63 877 939 9.25e-18 75.5
MS.gene026918.t1 AT1G56120 57.143 63 27 0 1 63 859 921 1.14e-17 75.1
MS.gene026918.t1 AT1G56120 57.143 63 27 0 1 63 711 773 1.49e-17 74.7
MS.gene026918.t1 AT1G70740 50.794 63 31 0 1 63 230 292 1.92e-16 71.6
MS.gene026918.t1 AT1G29750 53.968 63 29 0 1 63 835 897 3.32e-16 70.9
MS.gene026918.t1 AT1G29750 53.968 63 29 0 1 63 850 912 3.32e-16 70.9
MS.gene026918.t1 AT1G16670 57.143 63 27 0 1 63 212 274 5.32e-16 70.1
MS.gene026918.t1 AT1G56145 53.968 63 29 0 1 63 751 813 5.55e-16 70.1
MS.gene026918.t1 AT1G56145 53.968 63 29 0 1 63 854 916 5.56e-16 70.1
MS.gene026918.t1 AT1G56145 53.968 63 29 0 1 63 881 943 5.56e-16 70.1
MS.gene026918.t1 AT1G29730 65.306 49 16 1 1 48 840 888 3.48e-15 68.2
MS.gene026918.t1 AT1G29730 65.306 49 16 1 1 48 808 856 3.55e-15 67.8
MS.gene026918.t1 AT3G09010 52.381 63 30 0 1 63 215 277 5.77e-15 67.4
MS.gene026918.t1 AT4G23180 47.619 63 33 0 1 63 517 579 1.80e-14 65.9
MS.gene026918.t1 AT4G23230 46.032 63 34 0 1 63 506 568 2.19e-13 62.8
MS.gene026918.t1 AT1G70740 42.667 75 31 1 1 63 218 292 2.61e-13 62.8
MS.gene026918.t1 AT4G23140 49.206 63 32 0 1 63 520 582 2.83e-13 62.4
MS.gene026918.t1 AT4G23140 49.206 63 32 0 1 63 526 588 2.83e-13 62.4
MS.gene026918.t1 AT4G23150 46.032 63 34 0 1 63 505 567 1.30e-12 60.8
MS.gene026918.t1 AT4G23160 47.619 63 33 0 1 63 528 590 2.89e-12 59.7
MS.gene026918.t1 AT3G09010 54.902 51 23 0 1 51 215 265 3.29e-12 59.3
MS.gene026918.t1 AT2G16750 42.857 63 36 0 1 63 443 505 4.71e-12 58.9
MS.gene026918.t1 AT2G16750 42.857 63 36 0 1 63 443 505 4.71e-12 58.9
MS.gene026918.t1 AT4G23130 43.750 64 35 1 1 63 509 572 4.85e-12 58.9
MS.gene026918.t1 AT4G23130 43.750 64 35 1 1 63 513 576 4.86e-12 58.9
MS.gene026918.t1 AT4G11530 43.750 64 35 1 1 63 521 584 6.26e-12 58.9
MS.gene026918.t1 AT4G21390 50.794 63 30 1 1 63 698 759 6.54e-12 58.5
MS.gene026918.t1 AT1G70460 44.776 67 33 1 1 63 520 586 6.65e-12 58.5
MS.gene026918.t1 AT4G23190 43.939 66 34 1 1 63 441 506 6.88e-12 58.5
MS.gene026918.t1 AT4G23190 43.939 66 34 1 1 63 441 506 6.88e-12 58.5
MS.gene026918.t1 AT4G23190 43.939 66 34 1 1 63 519 584 6.90e-12 58.5
MS.gene026918.t1 AT4G38830 44.444 63 35 0 1 63 514 576 7.32e-12 58.5
MS.gene026918.t1 AT1G11330 42.857 63 36 0 1 63 693 755 7.50e-12 58.5
MS.gene026918.t1 AT4G23300 43.939 66 34 1 1 63 522 587 7.76e-12 58.5
MS.gene026918.t1 AT1G11330 42.857 63 36 0 1 63 691 753 7.80e-12 58.5
MS.gene026918.t1 AT1G55200 46.032 63 34 0 1 63 547 609 8.56e-12 58.5
MS.gene026918.t1 AT1G55200 46.032 63 34 0 1 63 547 609 8.56e-12 58.5
MS.gene026918.t1 AT1G55200 46.032 63 34 0 1 63 547 609 8.56e-12 58.5
MS.gene026918.t1 AT1G55200 46.032 63 34 0 1 63 547 609 8.56e-12 58.5
MS.gene026918.t1 AT1G61610 46.032 63 33 1 1 63 694 755 1.05e-11 58.2
MS.gene026918.t1 AT4G23180 47.917 48 25 0 1 48 517 564 1.13e-11 58.2
MS.gene026918.t1 AT1G61860 50.794 63 30 1 2 63 257 319 1.27e-11 57.8
MS.gene026918.t1 AT4G11490 42.424 66 33 2 1 63 490 553 1.44e-11 57.8
MS.gene026918.t1 AT4G00960 43.077 65 33 2 1 63 140 202 1.64e-11 57.4
MS.gene026918.t1 AT3G26940 46.154 65 32 1 2 63 245 309 1.71e-11 57.4
MS.gene026918.t1 AT4G00970 43.077 65 33 2 1 63 515 577 1.84e-11 57.4
MS.gene026918.t1 AT4G00960 43.077 65 33 2 1 63 133 195 1.91e-11 57.0
MS.gene026918.t1 AT4G00960 43.077 65 33 2 1 63 227 289 2.47e-11 57.0
MS.gene026918.t1 AT5G15080 50.000 56 26 1 2 55 320 375 2.54e-11 57.0
MS.gene026918.t1 AT1G11350 44.444 63 35 0 1 63 681 743 2.92e-11 57.0
MS.gene026918.t1 AT3G17420 41.270 63 37 0 1 63 323 385 3.30e-11 56.6
MS.gene026918.t1 AT4G23130 44.444 54 29 1 1 53 513 566 3.52e-11 56.6
MS.gene026918.t1 AT4G23270 45.312 64 34 1 1 63 495 558 3.60e-11 56.6
MS.gene026918.t1 AT4G23270 45.312 64 34 1 1 63 495 558 3.60e-11 56.6
MS.gene026918.t1 AT4G23270 45.312 64 34 1 1 63 495 558 3.60e-11 56.6
MS.gene026918.t1 AT5G01020 41.270 63 36 1 2 63 244 306 3.72e-11 56.6
MS.gene026918.t1 AT1G23540 46.269 67 32 1 1 63 538 604 3.79e-11 56.6
MS.gene026918.t1 AT3G01300 50.000 56 26 1 2 55 314 369 4.30e-11 56.2
MS.gene026918.t1 AT3G45860 43.077 65 35 1 1 63 520 584 4.34e-11 56.2
MS.gene026918.t1 AT1G11340 44.444 63 33 1 1 63 684 744 5.46e-11 56.2
MS.gene026918.t1 AT5G35580 44.444 63 34 1 2 63 251 313 6.55e-11 55.8
MS.gene026918.t1 AT5G35580 44.444 63 34 1 2 63 263 325 6.56e-11 55.8
MS.gene026918.t1 AT1G10620 46.377 69 29 4 1 63 537 603 6.82e-11 55.8
MS.gene026918.t1 AT3G13690 46.032 63 34 0 1 63 579 641 6.96e-11 55.8
MS.gene026918.t1 AT3G13690 46.032 63 34 0 1 63 579 641 6.96e-11 55.8
MS.gene026918.t1 AT3G13690 46.032 63 34 0 1 63 579 641 6.96e-11 55.8
MS.gene026918.t1 AT1G11410 41.270 63 35 1 1 63 577 637 7.60e-11 55.8
MS.gene026918.t1 AT1G11410 41.270 63 35 1 1 63 699 759 7.77e-11 55.8
MS.gene026918.t1 AT5G63940 41.270 63 37 0 1 63 531 593 8.21e-11 55.5
MS.gene026918.t1 AT4G23310 42.188 64 36 1 1 63 637 700 8.31e-11 55.5
MS.gene026918.t1 AT4G23310 42.188 64 36 1 1 63 677 740 8.32e-11 55.5
MS.gene026918.t1 AT1G11410 41.270 63 35 1 1 63 692 752 8.32e-11 55.5
MS.gene026918.t1 AT1G11410 41.270 63 35 1 1 63 668 728 8.73e-11 55.5

Find 12 sgRNAs with CRISPR-Local

Find 26 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAGGAAGCATTCTATCTTT+TGG 0.231989 2.2:+18423318 MS.gene026918:CDS
AAAGCAGATGTTTATAGTTT+CGG 0.289810 2.2:+18423241 MS.gene026918:CDS
TAACCATGCATTGCATATTC+AGG 0.342447 2.2:-18423208 None:intergenic
GTTGCTTTAGAAATCGTTAG+TGG 0.454203 2.2:+18423268 MS.gene026918:CDS
GCACATTTGTTGAATGAAAG+AGG 0.491857 2.2:+18423783 MS.gene026918:CDS
TTCCTCCTTTGACCAATACA+TGG 0.510364 2.2:-18423302 None:intergenic
GAATGAAAGAGGTGATCTAA+TGG 0.511730 2.2:+18423794 MS.gene026918:CDS
GAAGGAGCAACACCATGTAT+TGG 0.536082 2.2:+18423290 MS.gene026918:CDS
CTTTAGAAATCGTTAGTGGA+AGG 0.541669 2.2:+18423272 MS.gene026918:CDS
CAACACCATGTATTGGTCAA+AGG 0.584242 2.2:+18423297 MS.gene026918:CDS
CACCATGTATTGGTCAAAGG+AGG 0.636451 2.2:+18423300 MS.gene026918:CDS
GCTCCTGAATATGCAATGCA+TGG 0.667238 2.2:+18423205 MS.gene026918:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATTTTAAGATTTTAGAAA+TGG - chr2.2:18423596-18423615 None:intergenic 10.0%
!! TAATTGTAAAATACATTTCA+TGG + chr2.2:18423563-18423582 MS.gene026918:intron 15.0%
!! AACTCTACTACATATAAAAA+GGG - chr2.2:18423471-18423490 None:intergenic 20.0%
!! GTCATTTACAAAATTACAAT+AGG - chr2.2:18423723-18423742 None:intergenic 20.0%
!!! TTTCTATTTTTTCTTTCAAC+AGG + chr2.2:18423761-18423780 MS.gene026918:intron 20.0%
! AAAGCAGATGTTTATAGTTT+CGG + chr2.2:18423241-18423260 MS.gene026918:CDS 25.0%
! CAACTCTACTACATATAAAA+AGG - chr2.2:18423472-18423491 None:intergenic 25.0%
AAGTCTTACACTTCTCTAAA+AGG + chr2.2:18423492-18423511 MS.gene026918:intron 30.0%
AGTGTAAGTAAACAGTACTA+TGG - chr2.2:18423391-18423410 None:intergenic 30.0%
TTACATGATCAATGAGAACA+TGG - chr2.2:18423358-18423377 None:intergenic 30.0%
!! AAGCATTCTATCTTTTGGAA+TGG + chr2.2:18423323-18423342 MS.gene026918:CDS 30.0%
!!! AGCATTCTATCTTTTGGAAT+GGG + chr2.2:18423324-18423343 MS.gene026918:CDS 30.0%
GAATGAAAGAGGTGATCTAA+TGG + chr2.2:18423794-18423813 MS.gene026918:CDS 35.0%
TAACCATGCATTGCATATTC+AGG - chr2.2:18423211-18423230 None:intergenic 35.0%
! CTTTAGAAATCGTTAGTGGA+AGG + chr2.2:18423272-18423291 MS.gene026918:CDS 35.0%
! GCACATTTGTTGAATGAAAG+AGG + chr2.2:18423783-18423802 MS.gene026918:CDS 35.0%
! TTCTCTAAAAGGACAGTGAT+GGG + chr2.2:18423503-18423522 MS.gene026918:intron 35.0%
!! GTTGCTTTAGAAATCGTTAG+TGG + chr2.2:18423268-18423287 MS.gene026918:CDS 35.0%
TTCCTCCTTTGACCAATACA+TGG - chr2.2:18423305-18423324 None:intergenic 40.0%
! CAACACCATGTATTGGTCAA+AGG + chr2.2:18423297-18423316 MS.gene026918:CDS 40.0%
! CTTCTCTAAAAGGACAGTGA+TGG + chr2.2:18423502-18423521 MS.gene026918:intron 40.0%
!!! GGAGGAAGCATTCTATCTTT+TGG + chr2.2:18423318-18423337 MS.gene026918:CDS 40.0%
GAAGGAGCAACACCATGTAT+TGG + chr2.2:18423290-18423309 MS.gene026918:CDS 45.0%
GCTCCTGAATATGCAATGCA+TGG + chr2.2:18423205-18423224 MS.gene026918:CDS 45.0%
! CACCATGTATTGGTCAAAGG+AGG + chr2.2:18423300-18423319 MS.gene026918:CDS 45.0%
! GACAGTGATGGGATCGAAAA+AGG + chr2.2:18423514-18423533 MS.gene026918:intron 45.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 18423202 18423830 18423202 ID=MS.gene026918
chr2.2 mRNA 18423202 18423830 18423202 ID=MS.gene026918.t1;Parent=MS.gene026918
chr2.2 exon 18423202 18423345 18423202 ID=MS.gene026918.t1.exon1;Parent=MS.gene026918.t1
chr2.2 CDS 18423202 18423345 18423202 ID=cds.MS.gene026918.t1;Parent=MS.gene026918.t1
chr2.2 exon 18423783 18423830 18423783 ID=MS.gene026918.t1.exon2;Parent=MS.gene026918.t1
chr2.2 CDS 18423783 18423830 18423783 ID=cds.MS.gene026918.t1;Parent=MS.gene026918.t1
Gene Sequence

>MS.gene026918

ATGGCTCCTGAATATGCAATGCATGGTTATTTAACAAACAAAGCAGATGTTTATAGTTTCGGAATTGTTGCTTTAGAAATCGTTAGTGGAAGGAGCAACACCATGTATTGGTCAAAGGAGGAAGCATTCTATCTTTTGGAATGGGTAACTTTTCCATGTTCTCATTGATCATGTAAATTTGATTATCCATAGTACTGTTTACTTACACTTCATTTTGTGTCATACATATATTGTTGTTCATTTTCGACGAGAATAGAATCATGTGTCCCTTTTTATATGTAGTAGAGTTGAAGTCTTACACTTCTCTAAAAGGACAGTGATGGGATCGAAAAAGGATAAAACTGTAATTTATCTTGAAGAGTAATTGTAAAATACATTTCATGGATACTGTCCATTTCTAAAATCTTAAAATTACGAAGAATCTAAGTGACATACTAGTGAAATCATATTGTTTTTCAGATGTTTAATATAAATATGAACAATCTCGTATTTTGAATTTTTTTCTGAAGTTGAATGTACCTATTGTAATTTTGTAAATGACTTGCGTTTCAAATCAAACTTTCTATTTTTTCTTTCAACAGGCACATTTGTTGAATGAAAGAGGTGATCTAATGGAGTTAGTTGATTGA
Protein sequence

>MS.gene026918.t1

MAPEYAMHGYLTNKADVYSFGIVALEIVSGRSNTMYWSKEEAFYLLEWAHLLNERGDLMELVD