AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene026932

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene026932.t1 MTR_6g007647 98.606 287 4 0 1 287 1 287 0.0 584
MS.gene026932.t1 MTR_6g007647 98.814 253 3 0 35 287 1 253 0.0 513
MS.gene026932.t1 MTR_4g107650 39.576 283 111 9 1 228 1 278 2.40e-46 159
MS.gene026932.t1 MTR_5g038280 45.455 231 82 7 39 231 51 275 6.16e-46 157
MS.gene026932.t1 MTR_8g469430 70.297 101 30 0 63 163 85 185 6.69e-42 145
MS.gene026932.t1 MTR_8g468210 52.482 141 55 3 22 162 44 172 2.01e-39 139
MS.gene026932.t1 MTR_6g011610 62.162 111 41 1 52 162 82 191 1.39e-38 137
MS.gene026932.t1 MTR_6g011610 62.162 111 41 1 52 162 63 172 2.33e-38 135
MS.gene026932.t1 MTR_8g089895 52.113 142 55 1 32 173 32 160 2.62e-38 137
MS.gene026932.t1 MTR_5g039000 54.478 134 57 2 30 162 42 172 7.58e-38 135
MS.gene026932.t1 MTR_3g086790 62.264 106 40 0 66 171 59 164 1.37e-36 132
MS.gene026932.t1 MTR_3g080100 61.404 114 42 1 52 163 3 116 2.35e-36 129
MS.gene026932.t1 MTR_3g080100 59.664 119 46 1 47 163 37 155 4.97e-36 129
MS.gene026932.t1 MTR_7g103340 58.824 102 35 1 66 167 62 156 6.48e-32 118
MS.gene026932.t1 MTR_7g010020 56.250 112 45 2 52 162 67 175 4.86e-31 117
MS.gene026932.t1 MTR_1g061660 55.882 102 38 1 66 167 58 152 1.16e-29 112
MS.gene026932.t1 MTR_8g026960 54.255 94 43 0 71 164 38 131 4.30e-29 111
MS.gene026932.t1 MTR_3g092150 57.143 91 39 0 69 159 40 130 1.71e-28 109
MS.gene026932.t1 MTR_5g019650 47.748 111 56 1 67 175 53 163 1.00e-22 94.0
MS.gene026932.t1 MTR_5g019680 48.182 110 48 2 67 174 53 155 3.32e-22 92.0
MS.gene026932.t1 MTR_4g100550 47.222 108 48 2 52 159 107 205 5.24e-21 90.5
MS.gene026932.t1 MTR_1g017090 50.000 104 45 1 64 167 127 223 7.49e-21 90.1
MS.gene026932.t1 MTR_4g084750 43.089 123 58 3 64 186 62 172 1.61e-19 84.7
MS.gene026932.t1 MTR_5g013010 40.260 154 88 3 54 205 125 276 2.22e-19 86.3
MS.gene026932.t1 MTR_4g097600 50.538 93 39 1 67 159 127 212 3.71e-19 85.1
MS.gene026932.t1 MTR_8g006705 50.538 93 39 1 67 159 146 231 4.64e-19 85.5
MS.gene026932.t1 MTR_7g093430 42.500 120 69 0 61 180 154 273 6.21e-19 85.1
MS.gene026932.t1 MTR_5g014890 49.462 93 40 1 67 159 123 208 2.12e-18 83.2
MS.gene026932.t1 MTR_2g061030 42.105 114 66 0 67 180 200 313 4.35e-18 83.2
MS.gene026932.t1 MTR_3g103590 42.593 108 61 1 67 174 145 251 8.46e-18 82.0
MS.gene026932.t1 MTR_1g054285 40.833 120 71 0 61 180 148 267 9.84e-18 81.6
MS.gene026932.t1 MTR_4g126900 47.778 90 40 1 70 159 91 173 2.31e-17 79.3
MS.gene026932.t1 MTR_5g013010 55.385 65 27 1 54 118 125 187 7.82e-14 69.3
MS.gene026932.t1 MTR_2g038625 43.011 93 46 1 67 159 82 167 2.39e-13 68.2
MS.gene026932.t1 MTR_2g038580 43.011 93 46 1 67 159 82 167 2.39e-13 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene026932.t1 AT3G01470 56.794 287 101 8 1 281 1 270 3.18e-96 285
MS.gene026932.t1 AT5G65310 60.909 110 43 0 64 173 51 160 2.63e-38 137
MS.gene026932.t1 AT4G40060 49.315 146 67 1 53 191 45 190 3.05e-38 136
MS.gene026932.t1 AT5G65310 60.909 110 43 0 64 173 69 178 3.32e-38 137
MS.gene026932.t1 AT2G22430 68.367 98 31 0 66 163 61 158 3.97e-38 137
MS.gene026932.t1 AT1G69780 52.713 129 55 1 66 188 84 212 8.87e-38 135
MS.gene026932.t1 AT5G15150 70.213 94 28 0 66 159 114 207 1.18e-37 135
MS.gene026932.t1 AT3G01220 65.979 97 33 0 66 162 86 182 2.08e-35 129
MS.gene026932.t1 AT1G27045 58.716 109 45 0 58 166 16 124 4.85e-33 120
MS.gene026932.t1 AT1G27045 58.716 109 45 0 58 166 16 124 4.85e-33 120
MS.gene026932.t1 AT1G27045 58.716 109 45 0 58 166 8 116 4.91e-33 119
MS.gene026932.t1 AT1G27045 58.716 109 45 0 58 166 59 167 7.00e-33 120
MS.gene026932.t1 AT1G26960 47.297 148 69 3 29 173 36 177 3.19e-32 120
MS.gene026932.t1 AT2G46680 51.961 102 49 0 68 169 33 134 7.29e-31 116
MS.gene026932.t1 AT1G27045 59.223 103 42 0 58 160 59 161 8.44e-31 116
MS.gene026932.t1 AT3G61890 53.684 95 44 0 70 164 33 127 2.18e-30 114
MS.gene026932.t1 AT2G46680 55.556 90 40 0 68 157 33 122 3.16e-29 112
MS.gene026932.t1 AT4G36740 56.701 97 35 1 67 163 55 144 9.25e-28 107
MS.gene026932.t1 AT4G36740 56.701 97 35 1 67 163 56 145 9.47e-28 107
MS.gene026932.t1 AT5G03790 55.914 93 34 1 67 159 77 162 5.24e-26 102
MS.gene026932.t1 AT2G18550 54.639 97 37 1 67 163 61 150 6.42e-26 102
MS.gene026932.t1 AT5G03790 53.465 101 40 1 67 167 77 170 6.85e-26 102
MS.gene026932.t1 AT5G66700 49.524 105 46 1 67 164 71 175 2.31e-24 98.6
MS.gene026932.t1 AT2G36610 45.902 122 43 3 66 179 70 176 3.57e-24 96.7
MS.gene026932.t1 AT5G53980 45.455 99 54 0 58 156 2 100 4.91e-20 85.1
MS.gene026932.t1 AT4G17460 47.115 104 48 1 56 159 124 220 3.90e-19 85.5
MS.gene026932.t1 AT5G06710 42.500 120 69 0 61 180 184 303 8.51e-19 85.5
MS.gene026932.t1 AT2G22800 38.710 124 73 1 58 178 101 224 1.26e-18 84.0
MS.gene026932.t1 AT5G47370 44.348 115 52 2 50 159 108 215 1.96e-18 83.6
MS.gene026932.t1 AT2G01430 47.115 104 45 2 56 156 125 221 3.67e-18 82.8
MS.gene026932.t1 AT4G37790 44.231 104 51 1 56 159 115 211 2.14e-17 80.5
MS.gene026932.t1 AT3G60390 47.917 96 43 1 64 159 159 247 3.60e-17 80.5
MS.gene026932.t1 AT2G44910 48.387 93 41 1 67 159 163 248 4.47e-17 80.1
MS.gene026932.t1 AT4G16780 46.237 93 43 1 67 159 129 214 5.17e-17 79.7
MS.gene026932.t1 AT2G01430 58.182 55 23 0 65 119 137 191 2.49e-14 70.9
MS.gene026932.t1 AT1G70920 46.237 93 43 1 67 159 69 154 3.36e-14 70.5
MS.gene026932.t1 AT1G70920 46.591 88 47 0 67 154 39 126 3.67e-14 69.7
MS.gene026932.t1 AT5G06710 56.897 58 25 0 61 118 184 241 3.45e-13 68.6
MS.gene026932.t1 AT1G73360 34.653 101 50 2 66 164 32 118 5.74e-11 63.5

Find 73 sgRNAs with CRISPR-Local

Find 181 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACTTGAAGCTTCTCATTTA+AGG 0.097700 6.3:-3320818 None:intergenic
AACATGAACATGCTGTTTCT+TGG 0.235472 6.3:+3318605 MS.gene026932:CDS
ATCCTAGTTTCTTGGCCAAC+TGG 0.259750 6.3:-3319985 None:intergenic
TCTGATTGAACTCTTTCAAT+AGG 0.332216 6.3:-3321060 None:intergenic
TTTCTTGGAAATGCTGATCT+TGG 0.335848 6.3:+3318620 MS.gene026932:CDS
GTGGATGACCACATGAGTTC+TGG 0.344344 6.3:+3320928 MS.gene026932:CDS
TCAGTGCCTCTCCCTCTTCA+TGG 0.347311 6.3:-3321155 None:intergenic
AGGTTGCAATCCTAGTTTCT+TGG 0.355925 6.3:-3319993 None:intergenic
AACATATGATTCCATTACTA+AGG 0.392206 6.3:+3320120 MS.gene026932:CDS
GGAATCATATGTTGAAAGTA+GGG 0.419448 6.3:-3320110 None:intergenic
TTCAGAACCGTAGGGCTAGA+TGG 0.424104 6.3:+3320035 MS.gene026932:CDS
GAAGATGATGGGAGTGATGA+TGG 0.439088 6.3:+3321084 MS.gene026932:CDS
TGGAATCATATGTTGAAAGT+AGG 0.440148 6.3:-3320111 None:intergenic
TGTTGAAAGTAGGGAATCAT+AGG 0.441815 6.3:-3320101 None:intergenic
TTTCTCATTCTCCTTAGTAA+TGG 0.443693 6.3:-3320131 None:intergenic
AACCTAGGCAGGTGGCTGTA+TGG 0.452751 6.3:+3320011 MS.gene026932:CDS
AAGAGGGAGAGGCACTGAAT+TGG 0.468712 6.3:+3321160 MS.gene026932:CDS
TCCTAGTTTCTTGGCCAACT+GGG 0.472188 6.3:-3319984 None:intergenic
AGGGAGAGGCACTGAATTGG+TGG 0.476724 6.3:+3321163 MS.gene026932:CDS
TCCTCATCATACAGTTCATC+CGG 0.477560 6.3:-3319302 None:intergenic
TGAGCTATGTCCACTGGAAG+TGG 0.478436 6.3:-3320889 None:intergenic
GTTCAATCAGAGGAAGATGA+TGG 0.478448 6.3:+3321072 MS.gene026932:CDS
ACTAGGATTGCAACCTAGGC+AGG 0.478866 6.3:+3320000 MS.gene026932:CDS
GTGAGGCGGCGCTTCTTCTC+CGG 0.486011 6.3:-3319344 None:intergenic
AGAAACTAGGATTGCAACCT+AGG 0.487565 6.3:+3319996 MS.gene026932:CDS
TTTGATTCTCCTGCTTGTCG+TGG 0.496337 6.3:+3318578 MS.gene026932:CDS
CTGTATGGTTTCAGAACCGT+AGG 0.504508 6.3:+3320026 MS.gene026932:CDS
CACATGAGTTCTGGAAGCGT+TGG 0.505249 6.3:+3320937 MS.gene026932:CDS
ACCCAGTTGGCCAAGAAACT+AGG 0.526542 6.3:+3319983 MS.gene026932:CDS
AACAATGACACCAACGACAC+GGG 0.527406 6.3:-3320986 None:intergenic
TGATGAATAGGTACATATGT+TGG 0.530364 6.3:+3319916 MS.gene026932:intron
CATCCAGCATAGTTGTCAGC+TGG 0.530440 6.3:-3321030 None:intergenic
TTGTCTTCCATCTAGCCCTA+CGG 0.531725 6.3:-3320042 None:intergenic
ATGTTATTCCCACGACAAGC+AGG 0.535589 6.3:-3318587 None:intergenic
TTTCCAGCTGACAACTATGC+TGG 0.536407 6.3:+3321027 MS.gene026932:CDS
TTGATTCTCCTGCTTGTCGT+GGG 0.539519 6.3:+3318579 MS.gene026932:CDS
GCGCCGCCTCACTTCCGAGC+AGG 0.539627 6.3:+3319355 MS.gene026932:CDS
AAGATGATGGGAGTGATGAT+GGG 0.542417 6.3:+3321085 MS.gene026932:CDS
GGAAGGTCAATGATGAGCAT+GGG 0.542750 6.3:+3319245 MS.gene026932:intron
TTCAATCAGAGGAAGATGAT+GGG 0.547251 6.3:+3321073 MS.gene026932:CDS
AAAATCTGAGCTATGTCCAC+TGG 0.550742 6.3:-3320895 None:intergenic
AGGAAGGTCAATGATGAGCA+TGG 0.567797 6.3:+3319244 MS.gene026932:intron
GAGACCTTTCTTTAGCTCAC+CGG 0.569954 6.3:+3319283 MS.gene026932:CDS
CAACAATGACACCAACGACA+CGG 0.575613 6.3:-3320987 None:intergenic
AACCATACAGCCACCTGCCT+AGG 0.579439 6.3:-3320013 None:intergenic
TATGTTGGAGAAGAGCTTTG+AGG 0.579800 6.3:+3319931 MS.gene026932:CDS
AGGCAAGAAACCAACCTGCT+CGG 0.580249 6.3:-3319369 None:intergenic
GGGAGAGGCACTGAATTGGT+GGG 0.586237 6.3:+3321164 MS.gene026932:CDS
TCATCCGGTGAGCTAAAGAA+AGG 0.588529 6.3:-3319287 None:intergenic
ACATAACCATGAAGAGGGAG+AGG 0.603541 6.3:+3321149 MS.gene026932:CDS
GTACTACGAACAGCAGTCGC+CGG 0.606381 6.3:+3319325 MS.gene026932:CDS
AACCAACCTGCTCGGAAGTG+AGG 0.608175 6.3:-3319361 None:intergenic
GAAAGCTGATCCACTTCCAG+TGG 0.611490 6.3:+3320879 MS.gene026932:CDS
AGAACAAACTTGAGCCAGAG+AGG 0.615094 6.3:+3319957 MS.gene026932:CDS
CAACCTGCTCGGAAGTGAGG+CGG 0.622855 6.3:-3319358 None:intergenic
GAAGGTCAATGATGAGCATG+GGG 0.623217 6.3:+3319246 MS.gene026932:CDS
ACAATGACACCAACGACACG+GGG 0.624556 6.3:-3320985 None:intergenic
GCCAGAGAGGAAAACCCAGT+TGG 0.627216 6.3:+3319970 MS.gene026932:CDS
TGAGCAACATAACCATGAAG+AGG 0.628182 6.3:+3321143 MS.gene026932:CDS
GAATGAGAAACTCAAATCTG+AGG 0.629755 6.3:+3320144 MS.gene026932:CDS
GGAGAGGCACTGAATTGGTG+GGG 0.631899 6.3:+3321165 MS.gene026932:CDS
AAGCGTTGGAAGTGCAGTGG+TGG 0.633588 6.3:+3320951 MS.gene026932:CDS
CAACGCTTCCAGAACTCATG+TGG 0.634732 6.3:-3320936 None:intergenic
GAGCAACATAACCATGAAGA+GGG 0.640168 6.3:+3321144 MS.gene026932:CDS
ACCGGATGAACTGTATGATG+AGG 0.641946 6.3:+3319301 MS.gene026932:CDS
TGACAACTATGCTGGATGTG+TGG 0.645273 6.3:+3321035 MS.gene026932:CDS
AGGATTGCAACCTAGGCAGG+TGG 0.665303 6.3:+3320003 MS.gene026932:CDS
TGGAAGCGTTGGAAGTGCAG+TGG 0.670661 6.3:+3320948 MS.gene026932:CDS
ATGATGGGAGTGATGATGGG+AGG 0.679048 6.3:+3321088 MS.gene026932:CDS
TATTGAAAGAGTTCAATCAG+AGG 0.686434 6.3:+3321062 MS.gene026932:CDS
TGTATGGTTTCAGAACCGTA+GGG 0.689319 6.3:+3320027 MS.gene026932:CDS
CAATGACACCAACGACACGG+GGG 0.756439 6.3:-3320984 None:intergenic
AAGGTCAATGATGAGCATGG+GGG 0.757009 6.3:+3319247 MS.gene026932:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAAAATCAAATGTTTTTAA+TGG + chr6.3:3320222-3320241 MS.gene026932:intron 10.0%
!! TACAAACACTAATAAATAAA+TGG - chr6.3:3319612-3319631 None:intergenic 15.0%
!! AATATAGTGTAGAATCTTAT+GGG - chr6.3:3320550-3320569 None:intergenic 20.0%
!! ATATATGCAAATTGAGAATT+TGG + chr6.3:3320336-3320355 MS.gene026932:intron 20.0%
!! ATTAGTGTTATGCATTAAAA+AGG + chr6.3:3320373-3320392 MS.gene026932:intron 20.0%
!! GTACTATTACTATTATTAGT+TGG + chr6.3:3320300-3320319 MS.gene026932:intron 20.0%
!! TAATATAGTGTAGAATCTTA+TGG - chr6.3:3320551-3320570 None:intergenic 20.0%
!!! AATCAAATGTTTTTAATGGT+CGG + chr6.3:3320226-3320245 MS.gene026932:intron 20.0%
!!! ACTAATGAGTTTTTTAAAAG+AGG + chr6.3:3320705-3320724 MS.gene026932:intron 20.0%
!!! CTAATGAGTTTTTTAAAAGA+GGG + chr6.3:3320706-3320725 MS.gene026932:intron 20.0%
!!! CTTAATCTATTGAGTTTTTA+TGG + chr6.3:3318659-3318678 MS.gene026932:intron 20.0%
!!! GATTTGATTTGATTTGATTT+GGG + chr6.3:3318920-3318939 MS.gene026932:intron 20.0%
!!! TAATGAGTTTTTTAAAAGAG+GGG + chr6.3:3320707-3320726 MS.gene026932:intron 20.0%
!!! TGATTTGATTTGATTTGATT+TGG + chr6.3:3318919-3318938 MS.gene026932:intron 20.0%
!!! TGTTTATTAGTTTTAGTGAT+TGG + chr6.3:3319651-3319670 MS.gene026932:intron 20.0%
!!! TTGATTTGAGTTTTTGTTAA+AGG + chr6.3:3319008-3319027 MS.gene026932:intron 20.0%
!!! TTTTTTGGATTGTAAATTGT+TGG + chr6.3:3318693-3318712 MS.gene026932:intron 20.0%
! AAACATATCCAAATTCATTC+AGG - chr6.3:3319396-3319415 None:intergenic 25.0%
! AAATTGTCTGTCAAAAGTTA+TGG + chr6.3:3320411-3320430 MS.gene026932:intron 25.0%
! AACATATGATTCCATTACTA+AGG + chr6.3:3320120-3320139 MS.gene026932:CDS 25.0%
! AATTGTCTGTCAAAAGTTAT+GGG + chr6.3:3320412-3320431 MS.gene026932:intron 25.0%
! ACCATAAAATAGTTAACAAG+TGG + chr6.3:3320742-3320761 MS.gene026932:intron 25.0%
! GAAATATGTGTGAAAAATGA+GGG + chr6.3:3319533-3319552 MS.gene026932:intron 25.0%
! TACAATCCAAAAAAACGAAA+TGG - chr6.3:3318687-3318706 None:intergenic 25.0%
! TGAAATATGTGTGAAAAATG+AGG + chr6.3:3319532-3319551 MS.gene026932:intron 25.0%
! TGTTAAGAATGGTATTTGTT+TGG + chr6.3:3318741-3318760 MS.gene026932:intron 25.0%
! TTTGTGATTAACTAACTTTG+TGG + chr6.3:3319891-3319910 MS.gene026932:intron 25.0%
!!! AAATTGTTGGTTTTGTTGTT+TGG + chr6.3:3318706-3318725 MS.gene026932:intron 25.0%
!!! GAATTTTTTTGAATGAAAGC+AGG + chr6.3:3319224-3319243 MS.gene026932:intron 25.0%
!!! GAGATTTTCTTTTTTTGGTT+AGG + chr6.3:3318888-3318907 MS.gene026932:intron 25.0%
!!! TCCACTTGTTAACTATTTTA+TGG - chr6.3:3320746-3320765 None:intergenic 25.0%
!!! TTAGTTTTAGTGATTGGTTA+AGG + chr6.3:3319657-3319676 MS.gene026932:intron 25.0%
!!! TTGATTTTATGAGTTGAGTT+AGG + chr6.3:3318846-3318865 MS.gene026932:intron 25.0%
!!! TTGGTTTGTTTTGTTAAGAA+TGG + chr6.3:3318730-3318749 MS.gene026932:intron 25.0%
!!! TTTGATTTGATTTGGGTTTT+TGG + chr6.3:3318927-3318946 MS.gene026932:intron 25.0%
AAAACGAGTGTAAATTGATG+AGG + chr6.3:3319188-3319207 MS.gene026932:intron 30.0%
AAATTTCCACTTACCAAAGA+AGG + chr6.3:3320496-3320515 MS.gene026932:intron 30.0%
AACTTGAAGCTTCTCATTTA+AGG - chr6.3:3320821-3320840 None:intergenic 30.0%
AACTTTGTGGTTTGATGAAT+AGG + chr6.3:3319904-3319923 MS.gene026932:intron 30.0%
AAGAATGGTATTTGTTTGGA+TGG + chr6.3:3318745-3318764 MS.gene026932:intron 30.0%
ACTTGATCGTGTATCAAATT+TGG + chr6.3:3318961-3318980 MS.gene026932:intron 30.0%
CTTGATCGTGTATCAAATTT+GGG + chr6.3:3318962-3318981 MS.gene026932:intron 30.0%
GGAATCATATGTTGAAAGTA+GGG - chr6.3:3320113-3320132 None:intergenic 30.0%
TACTGAATATATTTAGTCCC+CGG + chr6.3:3319808-3319827 MS.gene026932:intron 30.0%
TATTGAAAGAGTTCAATCAG+AGG + chr6.3:3321062-3321081 MS.gene026932:CDS 30.0%
TCAGTATAAGAGAAAAAGAC+TGG - chr6.3:3319794-3319813 None:intergenic 30.0%
TCTGATTGAACTCTTTCAAT+AGG - chr6.3:3321063-3321082 None:intergenic 30.0%
TCTGTATAGGATAGAATTAG+TGG + chr6.3:3320443-3320462 MS.gene026932:intron 30.0%
TGATGAATAGGTACATATGT+TGG + chr6.3:3319916-3319935 MS.gene026932:intron 30.0%
TGGAATCATATGTTGAAAGT+AGG - chr6.3:3320114-3320133 None:intergenic 30.0%
TTTCTCATTCTCCTTAGTAA+TGG - chr6.3:3320134-3320153 None:intergenic 30.0%
! TGGAAATTTGCTTCTTATGA+TGG - chr6.3:3320485-3320504 None:intergenic 30.0%
! TTCGCATAGTTACTTTGAAA+AGG - chr6.3:3320632-3320651 None:intergenic 30.0%
! TTTTGTTAAAGGAAGCAACT+TGG + chr6.3:3319019-3319038 MS.gene026932:intron 30.0%
!! AAATGTTTTTAATGGTCGGA+CGG + chr6.3:3320230-3320249 MS.gene026932:intron 30.0%
!! TTTTAAAAGAGGGGTATGAA+AGG + chr6.3:3320716-3320735 MS.gene026932:intron 30.0%
!!! ATGGTACCATTTCGTTTTTT+TGG + chr6.3:3318678-3318697 MS.gene026932:intron 30.0%
!!! TTTTTTGAATGAAAGCAGGA+AGG + chr6.3:3319228-3319247 MS.gene026932:intron 30.0%
ACTTACCAAAGAAGGTGATT+AGG + chr6.3:3320504-3320523 MS.gene026932:intron 35.0%
ATATCCAAATTCATTCAGGC+AGG - chr6.3:3319392-3319411 None:intergenic 35.0%
ATCTAGTTGATCTACAGGTT+TGG - chr6.3:3319841-3319860 None:intergenic 35.0%
ATGGTATTTGTTTGGATGGT+TGG + chr6.3:3318749-3318768 MS.gene026932:intron 35.0%
CATCAATCTAGTTGATCTAC+AGG - chr6.3:3319846-3319865 None:intergenic 35.0%
CTTGGTTGTGCATCAAAATT+TGG + chr6.3:3319037-3319056 MS.gene026932:intron 35.0%
GAATGAGAAACTCAAATCTG+AGG + chr6.3:3320144-3320163 MS.gene026932:CDS 35.0%
TAATCACCTTCTTTGGTAAG+TGG - chr6.3:3320505-3320524 None:intergenic 35.0%
TAGTGTAGAATCTTATGGGT+AGG - chr6.3:3320546-3320565 None:intergenic 35.0%
TATTTGTTTGGATGGTTGGT+GGG + chr6.3:3318753-3318772 MS.gene026932:intron 35.0%
TGTTGAAAGTAGGGAATCAT+AGG - chr6.3:3320104-3320123 None:intergenic 35.0%
TTATACTGAACACCTTCACT+CGG - chr6.3:3318821-3318840 None:intergenic 35.0%
TTCAATCAGAGGAAGATGAT+GGG + chr6.3:3321073-3321092 MS.gene026932:CDS 35.0%
TTTCTTGGAAATGCTGATCT+TGG + chr6.3:3318620-3318639 MS.gene026932:CDS 35.0%
! ATGAGTTGAGTTAGGTCTTA+TGG + chr6.3:3318854-3318873 MS.gene026932:intron 35.0%
! ATGGGTTTGAGTTTCTGTAT+AGG + chr6.3:3320430-3320449 MS.gene026932:intron 35.0%
! CAACATGTTGACTATTTCAC+AGG + chr6.3:3320789-3320808 MS.gene026932:intron 35.0%
! GATTGGTTAAGGAGAAGTTT+AGG + chr6.3:3319668-3319687 MS.gene026932:intron 35.0%
! GGTGGGAGATTTTCTTTTTT+TGG + chr6.3:3318883-3318902 MS.gene026932:intron 35.0%
! TCAGCTTTCTTTTCTGACAA+AGG - chr6.3:3320868-3320887 None:intergenic 35.0%
!! AACATGAACATGCTGTTTCT+TGG + chr6.3:3318605-3318624 MS.gene026932:CDS 35.0%
!!! GTTGGTTTTGTTGTTTGGTT+TGG + chr6.3:3318711-3318730 MS.gene026932:intron 35.0%
AAAATCTGAGCTATGTCCAC+TGG - chr6.3:3320898-3320917 None:intergenic 40.0%
AATATATTTAGTCCCCGGAG+AGG + chr6.3:3319813-3319832 MS.gene026932:intron 40.0%
AGAAACTAGGATTGCAACCT+AGG + chr6.3:3319996-3320015 MS.gene026932:CDS 40.0%
AGGTGATTAGGAGCTATCAA+AGG + chr6.3:3320516-3320535 MS.gene026932:intron 40.0%
AGGTTGCAATCCTAGTTTCT+TGG - chr6.3:3319996-3320015 None:intergenic 40.0%
GAGCAACATAACCATGAAGA+GGG + chr6.3:3321144-3321163 MS.gene026932:CDS 40.0%
GGTGACTGAAAATTTCCAGT+AGG + chr6.3:3319712-3319731 MS.gene026932:intron 40.0%
GTATTTGTTTGGATGGTTGG+TGG + chr6.3:3318752-3318771 MS.gene026932:intron 40.0%
GTTCAATCAGAGGAAGATGA+TGG + chr6.3:3321072-3321091 MS.gene026932:CDS 40.0%
TAGCTCCTAATCACCTTCTT+TGG - chr6.3:3320512-3320531 None:intergenic 40.0%
TATACTGAACACCTTCACTC+GGG - chr6.3:3318820-3318839 None:intergenic 40.0%
TATGTTGGAGAAGAGCTTTG+AGG + chr6.3:3319931-3319950 MS.gene026932:CDS 40.0%
TCCTCATCATACAGTTCATC+CGG - chr6.3:3319305-3319324 None:intergenic 40.0%
TGAGCAACATAACCATGAAG+AGG + chr6.3:3321143-3321162 MS.gene026932:CDS 40.0%
TGATTAGGAGCTATCAAAGG+AGG + chr6.3:3320519-3320538 MS.gene026932:intron 40.0%
TGGTTAAGGAGAAGTTTAGG+TGG + chr6.3:3319671-3319690 MS.gene026932:intron 40.0%
TGTATGGTTTCAGAACCGTA+GGG + chr6.3:3320027-3320046 MS.gene026932:CDS 40.0%
! AGCTCAGATTTTCAGCATCA+AGG + chr6.3:3320906-3320925 MS.gene026932:CDS 40.0%
! AGTTAGGTCTTATGGACAGA+TGG + chr6.3:3318862-3318881 MS.gene026932:intron 40.0%
! CATGTTGACTATTTCACAGG+TGG + chr6.3:3320792-3320811 MS.gene026932:intron 40.0%
! GAAATTTTCAGTCACCAGAG+AGG - chr6.3:3319708-3319727 None:intergenic 40.0%
! TAAAAGAGGGGTATGAAAGG+TGG + chr6.3:3320719-3320738 MS.gene026932:intron 40.0%
! TCAGATTTTCAGCATCAAGG+TGG + chr6.3:3320909-3320928 MS.gene026932:CDS 40.0%
!! AAAGGCTTTTTCTTCACACC+AGG - chr6.3:3320614-3320633 None:intergenic 40.0%
!! AAGATGATGGGAGTGATGAT+GGG + chr6.3:3321085-3321104 MS.gene026932:CDS 40.0%
!! AATGCTGATCTTGGTTTTCG+AGG + chr6.3:3318629-3318648 MS.gene026932:CDS 40.0%
AACAATGACACCAACGACAC+GGG - chr6.3:3320989-3321008 None:intergenic 45.0%
AAGGTCAATGATGAGCATGG+GGG + chr6.3:3319247-3319266 MS.gene026932:CDS 45.0%
ACATAACCATGAAGAGGGAG+AGG + chr6.3:3321149-3321168 MS.gene026932:CDS 45.0%
ACCGGATGAACTGTATGATG+AGG + chr6.3:3319301-3319320 MS.gene026932:CDS 45.0%
AGAACAAACTTGAGCCAGAG+AGG + chr6.3:3319957-3319976 MS.gene026932:CDS 45.0%
AGGAAGGTCAATGATGAGCA+TGG + chr6.3:3319244-3319263 MS.gene026932:intron 45.0%
ATCCTAGTTTCTTGGCCAAC+TGG - chr6.3:3319988-3320007 None:intergenic 45.0%
ATGTTATTCCCACGACAAGC+AGG - chr6.3:3318590-3318609 None:intergenic 45.0%
CAACAATGACACCAACGACA+CGG - chr6.3:3320990-3321009 None:intergenic 45.0%
CACACACAACTGAGAAGTTC+AGG + chr6.3:3318788-3318807 MS.gene026932:intron 45.0%
CTCAGTTGTGTGTGAGTTTC+AGG - chr6.3:3318782-3318801 None:intergenic 45.0%
CTGTATGGTTTCAGAACCGT+AGG + chr6.3:3320026-3320045 MS.gene026932:CDS 45.0%
CTTGCCTGCCTGAATGAATT+TGG + chr6.3:3319385-3319404 MS.gene026932:intron 45.0%
GAAGGTCAATGATGAGCATG+GGG + chr6.3:3319246-3319265 MS.gene026932:CDS 45.0%
GGAAGGTCAATGATGAGCAT+GGG + chr6.3:3319245-3319264 MS.gene026932:intron 45.0%
TAGGATCGAGTAAGACTGGT+TGG + chr6.3:3319731-3319750 MS.gene026932:intron 45.0%
TCAGTCACCAGAGAGGATTT+GGG - chr6.3:3319701-3319720 None:intergenic 45.0%
TCATCCGGTGAGCTAAAGAA+AGG - chr6.3:3319290-3319309 None:intergenic 45.0%
TCCTAGTTTCTTGGCCAACT+GGG - chr6.3:3319987-3320006 None:intergenic 45.0%
TGACAACTATGCTGGATGTG+TGG + chr6.3:3321035-3321054 MS.gene026932:CDS 45.0%
TTCAGTCACCAGAGAGGATT+TGG - chr6.3:3319702-3319721 None:intergenic 45.0%
TTGATTCTCCTGCTTGTCGT+GGG + chr6.3:3318579-3318598 MS.gene026932:CDS 45.0%
TTGTCTTCCATCTAGCCCTA+CGG - chr6.3:3320045-3320064 None:intergenic 45.0%
TTTCCAGCTGACAACTATGC+TGG + chr6.3:3321027-3321046 MS.gene026932:CDS 45.0%
TTTGATTCTCCTGCTTGTCG+TGG + chr6.3:3318578-3318597 MS.gene026932:CDS 45.0%
! AGGATCGAGTAAGACTGGTT+GGG + chr6.3:3319732-3319751 MS.gene026932:intron 45.0%
! AGGTCTTATGGACAGATGGT+GGG + chr6.3:3318866-3318885 MS.gene026932:intron 45.0%
! CTTTTTCTTCACACCAGGTG+GGG - chr6.3:3320609-3320628 None:intergenic 45.0%
! GAGACCTTTCTTTAGCTCAC+CGG + chr6.3:3319283-3319302 MS.gene026932:CDS 45.0%
! TAGGTCTTATGGACAGATGG+TGG + chr6.3:3318865-3318884 MS.gene026932:intron 45.0%
!! GAAGATGATGGGAGTGATGA+TGG + chr6.3:3321084-3321103 MS.gene026932:CDS 45.0%
!! GCTTTTTCTTCACACCAGGT+GGG - chr6.3:3320610-3320629 None:intergenic 45.0%
ACAATGACACCAACGACACG+GGG - chr6.3:3320988-3321007 None:intergenic 50.0%
ACCCAGTTGGCCAAGAAACT+AGG + chr6.3:3319983-3320002 MS.gene026932:CDS 50.0%
ACTAGGATTGCAACCTAGGC+AGG + chr6.3:3320000-3320019 MS.gene026932:CDS 50.0%
AGGCAAGAAACCAACCTGCT+CGG - chr6.3:3319372-3319391 None:intergenic 50.0%
CAACGCTTCCAGAACTCATG+TGG - chr6.3:3320939-3320958 None:intergenic 50.0%
CATCCAGCATAGTTGTCAGC+TGG - chr6.3:3321033-3321052 None:intergenic 50.0%
CCAGTAGGATCGAGTAAGAC+TGG + chr6.3:3319727-3319746 MS.gene026932:intron 50.0%
CCAGTCTTACTCGATCCTAC+TGG - chr6.3:3319730-3319749 None:intergenic 50.0%
GAAAGCTGATCCACTTCCAG+TGG + chr6.3:3320879-3320898 MS.gene026932:CDS 50.0%
GTGGATGACCACATGAGTTC+TGG + chr6.3:3320928-3320947 MS.gene026932:CDS 50.0%
TCAATGATGAGCATGGGGGA+AGG + chr6.3:3319251-3319270 MS.gene026932:CDS 50.0%
TGAGCTATGTCCACTGGAAG+TGG - chr6.3:3320892-3320911 None:intergenic 50.0%
TGGAGAACCCAAATCCTCTC+TGG + chr6.3:3319691-3319710 MS.gene026932:intron 50.0%
TTCAGAACCGTAGGGCTAGA+TGG + chr6.3:3320035-3320054 MS.gene026932:CDS 50.0%
! CTACAGGTTTGGTTCCTCTC+CGG - chr6.3:3319830-3319849 None:intergenic 50.0%
! TACAGGTTTGGTTCCTCTCC+GGG - chr6.3:3319829-3319848 None:intergenic 50.0%
!! AAGAGGGAGAGGCACTGAAT+TGG + chr6.3:3321160-3321179 MS.gene026932:CDS 50.0%
!! ATGATGGGAGTGATGATGGG+AGG + chr6.3:3321088-3321107 MS.gene026932:CDS 50.0%
!! CACATGAGTTCTGGAAGCGT+TGG + chr6.3:3320937-3320956 MS.gene026932:CDS 50.0%
!! GGCTTTTTCTTCACACCAGG+TGG - chr6.3:3320611-3320630 None:intergenic 50.0%
AACCAACCTGCTCGGAAGTG+AGG - chr6.3:3319364-3319383 None:intergenic 55.0%
AACCATACAGCCACCTGCCT+AGG - chr6.3:3320016-3320035 None:intergenic 55.0%
AACCTAGGCAGGTGGCTGTA+TGG + chr6.3:3320011-3320030 MS.gene026932:CDS 55.0%
AGGATTGCAACCTAGGCAGG+TGG + chr6.3:3320003-3320022 MS.gene026932:CDS 55.0%
CAATGACACCAACGACACGG+GGG - chr6.3:3320987-3321006 None:intergenic 55.0%
GCATGGGGGAAGGCTCAAAA+AGG + chr6.3:3319261-3319280 MS.gene026932:CDS 55.0%
GCCAGAGAGGAAAACCCAGT+TGG + chr6.3:3319970-3319989 MS.gene026932:CDS 55.0%
GTACTACGAACAGCAGTCGC+CGG + chr6.3:3319325-3319344 MS.gene026932:CDS 55.0%
TCAGGTTCGAACCCGAGTGA+AGG + chr6.3:3318806-3318825 MS.gene026932:intron 55.0%
TCAGTGCCTCTCCCTCTTCA+TGG - chr6.3:3321158-3321177 None:intergenic 55.0%
! ACAGGTTTGGTTCCTCTCCG+GGG - chr6.3:3319828-3319847 None:intergenic 55.0%
! CATCTGTTCTGAACCCCACC+TGG + chr6.3:3320593-3320612 MS.gene026932:intron 55.0%
! GCCAACTGGGTTTTCCTCTC+TGG - chr6.3:3319974-3319993 None:intergenic 55.0%
!! AAGCGTTGGAAGTGCAGTGG+TGG + chr6.3:3320951-3320970 MS.gene026932:CDS 55.0%
!! AGGGAGAGGCACTGAATTGG+TGG + chr6.3:3321163-3321182 MS.gene026932:CDS 55.0%
!! GGAGAGGCACTGAATTGGTG+GGG + chr6.3:3321165-3321184 MS.gene026932:CDS 55.0%
!! GGGAGAGGCACTGAATTGGT+GGG + chr6.3:3321164-3321183 MS.gene026932:CDS 55.0%
!! TGGAAGCGTTGGAAGTGCAG+TGG + chr6.3:3320948-3320967 MS.gene026932:CDS 55.0%
CAACCTGCTCGGAAGTGAGG+CGG - chr6.3:3319361-3319380 None:intergenic 60.0%
CGCCTCACTTCCGAGCAGGT+TGG + chr6.3:3319359-3319378 MS.gene026932:intron 65.0%
GAGAGTAGCCCCCGTGTCGT+TGG + chr6.3:3320976-3320995 MS.gene026932:CDS 65.0%
GTGAGGCGGCGCTTCTTCTC+CGG - chr6.3:3319347-3319366 None:intergenic 65.0%
GCGCCGCCTCACTTCCGAGC+AGG + chr6.3:3319355-3319374 MS.gene026932:CDS 75.0%


Chromosome Type Strat End Strand Name
chr6.3 gene 3318557 3321209 3318557 ID=MS.gene026932
chr6.3 mRNA 3318557 3321209 3318557 ID=MS.gene026932.t1;Parent=MS.gene026932
chr6.3 exon 3318557 3318650 3318557 ID=MS.gene026932.t1.exon1;Parent=MS.gene026932.t1
chr6.3 CDS 3318557 3318650 3318557 ID=cds.MS.gene026932.t1;Parent=MS.gene026932.t1
chr6.3 exon 3319246 3319376 3319246 ID=MS.gene026932.t1.exon2;Parent=MS.gene026932.t1
chr6.3 CDS 3319246 3319376 3319246 ID=cds.MS.gene026932.t1;Parent=MS.gene026932.t1
chr6.3 exon 3319926 3320165 3319926 ID=MS.gene026932.t1.exon3;Parent=MS.gene026932.t1
chr6.3 CDS 3319926 3320165 3319926 ID=cds.MS.gene026932.t1;Parent=MS.gene026932.t1
chr6.3 exon 3320811 3321209 3320811 ID=MS.gene026932.t1.exon4;Parent=MS.gene026932.t1
chr6.3 CDS 3320811 3321209 3320811 ID=cds.MS.gene026932.t1;Parent=MS.gene026932.t1
Gene Sequence

>MS.gene026932

ATGGAGTCTGGTCGTCTTTACTTTGATTCTCCTGCTTGTCGTGGGAATAACATGAACATGCTGTTTCTTGGAAATGCTGATCTTGGTTTTCGAGGTATTTTTCTTAATCTATTGAGTTTTTATGGTACCATTTCGTTTTTTTGGATTGTAAATTGTTGGTTTTGTTGTTTGGTTTGGTTTGTTTTGTTAAGAATGGTATTTGTTTGGATGGTTGGTGGGACACCTGAAACTCACACACAACTGAGAAGTTCAGGTTCGAACCCGAGTGAAGGTGTTCAGTATAACAGTATTGATTTTATGAGTTGAGTTAGGTCTTATGGACAGATGGTGGGAGATTTTCTTTTTTTGGTTAGGAAAAGATATGATTTGATTTGATTTGATTTGGGTTTTTGGTAAAAGAAGCAACTTGATCGTGTATCAAATTTGGGCACACAAAAAAAGAAGATATGATTTGATTTGAGTTTTTGTTAAAGGAAGCAACTTGGTTGTGCATCAAAATTTGGCTATGAGAAATAATGAATTAGAATTTTTCTCTCTTTTTTTTTTAAAAAATTTTGTTTTTTGTTTATGATTTTGTATTTGTAAGTGTTATGATTTGTGATATAGATGTTGTTTGAAGTGTTTGATGTAGAAAACGAGTGTAAATTGATGAGGTTGTTAATTTTTTGAATTTTTTTGAATGAAAGCAGGAAGGTCAATGATGAGCATGGGGGAAGGCTCAAAAAGGAGACCTTTCTTTAGCTCACCGGATGAACTGTATGATGAGGAGTACTACGAACAGCAGTCGCCGGAGAAGAAGCGCCGCCTCACTTCCGAGCAGGTTGGTTTCTTGCCTGCCTGAATGAATTTGGATATGTTTTTCATTATCTTGTGCTGATACTCTAACTATGAAAGAAACTATATTAATTTTTGTCAATTTTTCTCGTCAGCAATTAGTCTCACATCTAATATGATATGTGTTTAGCTTTTAATTAATGAAATATGTGTGAAAAATGAGGGTTGACTTTCAATTGCAATTTGATTTTGTAGTCATCAATTGATTGATTTTGAAACCATTTATTTATTAGTGTTTGTATATCAAAACTACATGTACTTGTTTATTAGTTTTAGTGATTGGTTAAGGAGAAGTTTAGGTGGAGAACCCAAATCCTCTCTGGTGACTGAAAATTTCCAGTAGGATCGAGTAAGACTGGTTGGGATATAATGATAATATTTATACAAGTATTATATTCAACCAGTCTTTTTCTCTTATACTGAATATATTTAGTCCCCGGAGAGGAACCAAACCTGTAGATCAACTAGATTGATGAGAGAGATATTACATGATATTAGTTTTTGTGATTAACTAACTTTGTGGTTTGATGAATAGGTACATATGTTGGAGAAGAGCTTTGAGGAAGAGAACAAACTTGAGCCAGAGAGGAAAACCCAGTTGGCCAAGAAACTAGGATTGCAACCTAGGCAGGTGGCTGTATGGTTTCAGAACCGTAGGGCTAGATGGAAGACAAAACAACTTGAAAGAGATTATGATGTTCTCAAGTCTTCCTATGATTCCCTACTTTCAACATATGATTCCATTACTAAGGAGAATGAGAAACTCAAATCTGAGGTATTTAACTACATATGTATTGTATAATCAAATGTGTGCATTTATAGTAGTTACGATTAAAATCAAATGTTTTTAATGGTCGGACGGTTATGATCGATCGACAACGTAAAAAAATTGTATATAAATTAAGTACTGTACTATTACTATTATTAGTTGGATTTTGTTATGCTATATATGCAAATTGAGAATTTGGTGAAGTCTGAAATGATTAGTGTTATGCATTAAAAAGGTAATGAATAGAATATAAATTGTCTGTCAAAAGTTATGGGTTTGAGTTTCTGTATAGGATAGAATTAGTGGCTTTACAATCAGAACTCCATCATAAGAAGCAAATTTCCACTTACCAAAGAAGGTGATTAGGAGCTATCAAAGGAGGTCCTACCCATAAGATTCTACACTATATTAATCACATACTAACAAAGAGTAGCATCTGTTCTGAACCCCACCTGGTGTGAAGAAAAAGCCTTTTCAAAGTAACTATGCGAATATACTTTTCTAGAGTTCTAAAAATATGCTTAAAACTTCATTTTGTGATAAAGACTAATGAGTTTTTTAAAAGAGGGGTATGAAAGGTGGACCATAAAATAGTTAACAAGTGGAAATTGAAGTATTGATTATCTTAACAACATGTTGACTATTTCACAGGTGGTATCCTTAAATGAGAAGCTTCAAGTTCAAGCTAAAGATATGCTTGAAGAACCTTTGTCAGAAAAGAAAGCTGATCCACTTCCAGTGGACATAGCTCAGATTTTCAGCATCAAGGTGGATGACCACATGAGTTCTGGAAGCGTTGGAAGTGCAGTGGTGGACGAGAGTAGCCCCCGTGTCGTTGGTGTCATTGTTGACAGCGTCGATTCATACTTTCCAGCTGACAACTATGCTGGATGTGTGGCTCCTATTGAAAGAGTTCAATCAGAGGAAGATGATGGGAGTGATGATGGGAGGAACTACTTTGATGTGTTTGTTGCATCTGAAACTGAGCAACATAACCATGAAGAGGGAGAGGCACTGAATTGGTGGGGTAATATGTATTATGTTGCATAA
Protein sequence

>MS.gene026932.t1

MESGRLYFDSPACRGNNMNMLFLGNADLGFRGRSMMSMGEGSKRRPFFSSPDELYDEEYYEQQSPEKKRRLTSEQVHMLEKSFEEENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDVLKSSYDSLLSTYDSITKENEKLKSEVVSLNEKLQVQAKDMLEEPLSEKKADPLPVDIAQIFSIKVDDHMSSGSVGSAVVDESSPRVVGVIVDSVDSYFPADNYAGCVAPIERVQSEEDDGSDDGRNYFDVFVASETEQHNHEEGEALNWWGNMYYVA