AlfalfaGEDB | MS.gene027005

M. sativa cultivar XinJiangDaYe / MS.gene027005

KEGG: K12606
GO: -
PFAM: PF04078.16

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene027005.t1	XP_013459842.1	99.7	306	1	0	1	306	1	306	1.40E-166	595.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene027005.t1	Q6IP65	67.4	291	95	0	6	296	3	293	2.0e-105	383.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene027005.t1	A0A072UXT2	99.7	306	1	0	1	306	1	306	1.0e-166	595.5

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene027005.t1	TR	Rcd1-like

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene027005.t1	MTR_3g053170	99.673	306	1	0	1	306	1	306	0.0	624
MS.gene027005.t1	MTR_8g106940	60.390	308	116	2	1	304	11	316	4.14e-122	353
MS.gene027005.t1	MTR_6g065170	60.927	302	112	2	1	298	11	310	2.30e-120	348
MS.gene027005.t1	MTR_5g093460	59.220	282	114	1	16	297	157	437	1.94e-110	327
MS.gene027005.t1	MTR_5g093460	65.672	134	45	1	22	155	1	133	3.79e-50	172
MS.gene027005.t1	MTR_3g018640	57.093	289	122	1	3	289	13	301	5.67e-108	316
MS.gene027005.t1	MTR_1g056470	66.814	226	75	0	20	245	28	253	7.27e-105	307
MS.gene027005.t1	MTR_1g043540	56.000	125	54	1	130	254	9	132	8.69e-37	128
MS.gene027005.t1	MTR_1g043500	49.206	63	31	1	184	245	3	65	4.01e-13	64.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene027005.t1	AT3G20800	86.735	294	37	2	12	304	24	316	0.0	520
MS.gene027005.t1	AT5G12980	78.694	291	56	2	17	306	26	311	3.78e-169	471
MS.gene027005.t1	AT2G32550	34.432	273	163	5	27	286	51	320	8.03e-44	152
MS.gene027005.t1	AT2G32550	35.060	251	149	4	47	286	34	281	2.01e-42	147
MS.gene027005.t1	AT2G32550	34.934	229	135	4	69	286	1	226	2.76e-37	132

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Find 73 sgRNAs with CRISPR-Local

Find 0 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTCATCTAACCTGGAGC+AGG	0.510559	3.4:+49946689	None:intergenic
AAAGATTCTGTTAGACGATG+TGG	0.532417	3.4:-49943947	MS.gene027005:CDS
AAATGAATTCCATAGCAATG+GGG	0.741455	3.4:+49947696	None:intergenic
AACTCATCTAACCTGGAGCA+GGG	0.624665	3.4:+49946690	None:intergenic
AACTGATTCACAATGTTGGA+GGG	0.575243	3.4:-49942975	MS.gene027005:CDS
AAGATCTAGCCCCATTGCTA+TGG	0.486924	3.4:-49947705	MS.gene027005:CDS
AAGATTCTGTTAGACGATGT+GGG	0.593200	3.4:-49943946	MS.gene027005:CDS
AATCGGGTTCCTGCACTGCA+AGG	0.603945	3.4:-49942952	MS.gene027005:CDS
ACAAGGATGCTATTCCTGAA+TGG	0.556336	3.4:-49946180	MS.gene027005:intron
AGAAAGTAACATTACCATTC+AGG	0.352299	3.4:+49946166	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
chr3.4	gene	49942918	49950419	49942918	ID=MS.gene027005
chr3.4	mRNA	49942918	49950419	49942918	ID=MS.gene027005.t1;Parent=MS.gene027005
chr3.4	exon	49950279	49950419	49950279	ID=MS.gene027005.t1.exon1;Parent=MS.gene027005.t1
chr3.4	CDS	49950279	49950419	49950279	ID=cds.MS.gene027005.t1;Parent=MS.gene027005.t1
chr3.4	exon	49947672	49947743	49947672	ID=MS.gene027005.t1.exon2;Parent=MS.gene027005.t1
chr3.4	CDS	49947672	49947743	49947672	ID=cds.MS.gene027005.t1;Parent=MS.gene027005.t1
chr3.4	exon	49946702	49946791	49946702	ID=MS.gene027005.t1.exon3;Parent=MS.gene027005.t1
chr3.4	CDS	49946702	49946791	49946702	ID=cds.MS.gene027005.t1;Parent=MS.gene027005.t1
chr3.4	exon	49946181	49946223	49946181	ID=MS.gene027005.t1.exon4;Parent=MS.gene027005.t1
chr3.4	CDS	49946181	49946223	49946181	ID=cds.MS.gene027005.t1;Parent=MS.gene027005.t1
chr3.4	exon	49945157	49945263	49945157	ID=MS.gene027005.t1.exon5;Parent=MS.gene027005.t1
chr3.4	CDS	49945157	49945263	49945157	ID=cds.MS.gene027005.t1;Parent=MS.gene027005.t1
chr3.4	exon	49944718	49944813	49944718	ID=MS.gene027005.t1.exon6;Parent=MS.gene027005.t1
chr3.4	CDS	49944718	49944813	49944718	ID=cds.MS.gene027005.t1;Parent=MS.gene027005.t1
chr3.4	exon	49943799	49943989	49943799	ID=MS.gene027005.t1.exon7;Parent=MS.gene027005.t1
chr3.4	CDS	49943799	49943989	49943799	ID=cds.MS.gene027005.t1;Parent=MS.gene027005.t1
chr3.4	exon	49943592	49943661	49943592	ID=MS.gene027005.t1.exon8;Parent=MS.gene027005.t1
chr3.4	CDS	49943592	49943661	49943592	ID=cds.MS.gene027005.t1;Parent=MS.gene027005.t1
chr3.4	exon	49942918	49943028	49942918	ID=MS.gene027005.t1.exon9;Parent=MS.gene027005.t1
chr3.4	CDS	49942918	49943028	49942918	ID=cds.MS.gene027005.t1;Parent=MS.gene027005.t1

Gene Sequence

>MS.gene027005

ATGAACAACACTTCTTCATTCGGCTCTATTCCTCCTTCTCCCGCTTCTTCCAACTCATCCTCGATGGCTTCCTCTGAACAACTCGTTCTCGAACTCAGCAATCCCGAACTTCGTGAAAACGCTCTTCTCGAACTCTCTAAGGTATCTTCTTCTTCATCATCATCGTAACCATTTTCTCTTTCACCTTTTTCTTTCATAACTCTAAACAATTTCAAATTTCTCCATTTAATTGTTTAAATACGTGATTAGGGTTATGGATTATGATTACGGTTATGTTAGTTAATTTTTGAGATCTATGTAGCACTGACACATGAAACTAAGAAGCTGGCACAATTTGAGTAAATGACATAATTTAATGTAATTACATGTGTTTGGTGTAATTACATGTGTTTGGTGTCTGACACTGACACATGTCAGACACCAAACATGCTTTCGATCAAAAGTGTTGAGATATGAGAATGGTACACTGTTTATTTGTGTTGTTATGTGTTGAAAGGTTGATTTGGTTTTCCTTTTTTAGTTGATTGTTTTGTTATGTTACACTGTTTATGATTAGGGTTTTGTTAGTTAATTGTTGGGATCGATGAAATACAGAAATGAACACCGGACATTACATGACATGACATGATGACACTAGTAATAATTTGAGAAAATGACATAATTGAATGTAATATCATGAGGTAGTGTCGGACACTAGAGATGCATTTGGTCAGAAGTTTGGATGATATGTGTTGTTATGATAATTCTACACTGTTTAATTACGTTGTTATGTGTTGAAAATTTGTTCTGGTTTTTATTTTATTTATATTTTTTTAATTGTAGTTTTGTTTTTGCTGTTTTGTGTGTTTGTTATGACATTTGTTTTTAGTTGATGATTACTGATTTGGTTTTTGGTATAGATTTATAGTGTGATCAATTTTGTGAGAGTGAGAATTGGTTTCAATGGAATTTGATGTGTGGGTCATTGATTGATCGATTCCTTTTGTTGAAATTAGGGTTGCACGGGGAGATGTAAATTTAGTTATTGTTTGTTTTGTTGCTGACTCACTTTTTTTATTTTTTGTATTTACACTCAAAATTTGAAATTGTTACGTTACTTCTTGTGCTAGGGTTTTTGTGGTTTTGTTAAACTTAATTTATTTTTTTGACTGGATTTAAACCTAATTTATTCAGAATTACGATATGGCAATCTTGATATCTCAACAGCAGATATACTAGAGCTGTCTAGTCTTGAGTGTGAGAGCGTGCGTTACAGATTTTCAAAGGGTGTCTGTTTAAAAATAACAAATATCAAGTCTAGTATGTAAGAAAACTACAAATGTTCAGCTTGCGCGTGGGGGGCGCGTTAAAATGTGTGGAGTGCTACACCACATTTACGAAATTTACGGTTTTTACCCCTTTATTGTGCGTAGTTTTGTAATTTTGAACGTGATTAGGATTGTCAAAATCGGTAAACCGTCTTAAAGAAAAATACAAATATCCAATCGGATATGCAACAAAACTAAAGATGTTCAGCTTGCGTGTGGGGGGCACGTTAAAATGCGTGTAGTTCCATGCACAATTACCAGTTTTGCGGTTTTTTACCCCTTTATTGTGTGTACTTTTGTGATCTTGAACGTGATCTTGATTGTCAAAGTCGGCAAACCTTCTTAAAGGAAAATAGATTAAAATGGTAAAAATATAACCGTTGTTACAAAACATGACAGTAAAATTGACATCATGATGTTACATTAAATTGCCGTGTTGTGTTCAAAACGATGAGATAAATGATAAATCAAGTGAGAAGAAACCGAAACAGAAAATATCAACTGTCCACAAAAGTGACATGCCGACTACTCAGGGTGCCACTGCCCAGGGTTCAGCCGCCGCCAAAGATGGCACGATGCGTTCTGCTGCGGAACAACTCATTTGTAAACTTAGAAACCCTGACGACATTGAAAATGCACTTCGTGAGTTCTGCAAGGTTACCATTTCCCCTTTATTTTAGAATACCAGATTAGAGTTTCAACAAATTTGGATTGAAAACAAAGTGCGTGAAGAGGGATTGCGGGTTCGAACCCGCATCTCAACACATCAGATGTCCCCACAACCTTTTACTTACCCTCTCAATCACATTTACTGGATTGTATTTACTTTTTTTTTTGTTAATGCGCGGTTAGGTTTTCATTTAATTAATTTCTTGTTGCAGAGATGGTTTGGAACTTTGATCTGGCTTTCAAATGTTAGTTAATTTTGAACATATGATATTGATATTATGTTTATGTGTTCTTGTTATGAGTTTGCTGTCGTGTCGGACAAATTTGACTTTTTTAATGTTTTTCTGTTTTGCGTGTTTTTCGAATCTCAGTTTTCCTTTGTTGTTACAATTTTTACCTGAGAGAAAAGTAGAAAGAGGTATGATCATTTTTGCATGAGTATTCCCATTTGAGTGTGAATCTGTTTCAATGGCTTTGGTTTGTGCATTATTTCTTCCTTATGTTGAATTTGGGGTTACATGGGAGATGTAATCATTATTTTTTAATGGATTGATGCTGATTAACTAATTAAATTTTAGATTTGTGCTAAAAATTGTTTAGACTTTATTGAATTATATCACGATGATTTGACTTGGTTTCTGTTTGTTTGGATTGCTACTGCACTCATATGGGTATCTCATTTTTGTTTTATGTATTGTAGAAGAGGGAGCAATTTCAAGATCTAGCCCCATTGCTATGGAATTCATTTGGTACTATTGCAGCACTTCTGCAGGTATGTTGTGTCACTTTTTTCCTATCTGTATTGTTTAGCTTGTGTTGCTATAATCTTTCATATGAATCTGTAGTCAATAGAAGCCGTCACTACGCGAAACCCTGCCCTGTTGATTTTCATTTTTGAGTAGCAGCAAAATATCGTGGCCTCTCTCTACAGTGAATCTCCTGTAAAATTCCAAATATGCCTTCAATTTATAGATGCTCCGGTGTTCCCTTTCGTTTCTTTTGAAACTTTTTGGTCATTTCATCCTAAACTATGCTTTATGTTGGGTTTGAATATTGATAACACTGAACTTTGATTATTAGTTTTGAATGTGTAAGATACTATGGTATAGATTTCTGAGCTTTTTATGTGTATCATACTATGGTATAAATTTCTTGTATTGTTTTTCCAAACTTTAATGTAGCGGTATCGATGATGCCCTTTCTCATGATACCGCTATAGCATTTTGGAGGTCCACTGCTATGCTCTACTATCTGCCATTGACAACATAAATATTTGCTTAGTTTTGAATATATTGTGGCATTCACATTTTTCTCTTCTCCCCCTATTTCTTTGTTTTGGTAACCTGTTGTTATACTTTGTTCCAACTATTTTTCCTTGACTAGACCAACTTTGAAATTTGATAATTAGTCAAAACTACGCATTGTTGTGATTTAACTTCGATCGTTTTAAAACTGTAAATCTAAAAATTGGTTAGCTTTAAAATACTATAATATCAGCATACTCTGTAAACTGCTCTCAGTTTCTCCGCATTTATTTTAATTTAATATTTTCTCACCTCAGTCTGCTCTATATCTCCCTTTCTGTTTCCATTAGCAAGGTTTCTCAGTTTTGTCCTCCACTAAGTTGGATTTGATATTTTGTTTTCTTTCAGGAAATTGTTTCAATATACCCTGTTTTGTCTCCTCCCAACCTCACTCCAGCACAATCAAATCGAGTGTGCAATGCTCTTGCCCTGCTCCAGGTTAGATGAGTTTGTCTAACTCAATCCTTTTATTTGTTTGTGAATAACTTGATTATATGAATACTCATTTTAAATCACCAAACAGTGAAATTTGGACATCTATATCACGCTTTTAGTAGAAATATCTTAGTAAAATTTCAAGGTGGGATACACATAAAAAACATAACACTTGTTAGAACTGTGTGCGTGTGGACTGTTACAGGATATACTTTGCGTGGTAGGTTATTTGTATTTGACCATTCCACCTGCGTTCTTCGCAAGATAGTAGAAAAGAAAAGAAGACACTGATGTGCAGTGTTTCTTCAGTTTATTAAATCTTAAGTTCAGATAATCAATTGATTAGGAAAGGAACCAGCCATAGATATTATACTTTTTAGTTTTTTTGTTCTTATTTTCTTTTGAGACATATCATTAAGAACATAAAAAAAAAAAAAAACGGCACTAAGTTTTTTCTTCTTCTCCTCTTGTTTTCTTACAGTGTGTAGCATCTCACCCTGATACAAGGATGCTATTCCTGAATGGTAATGTTACTTTCTTCATTCATTCGATGAATTTTGAATTTCTGTCTGATTTTTAATTATCATCTATGCTTCAAATATTCTGATGGGTGTTGGACTAATGTGTTCTTAAAAATTAAAGTTGGCATTTGTATTTTGCTGAAATGCTTTGGGAAATGGTGCTGGCTTCTCTAAATTTGGTCGATGCCATTTCCATCGAAGTAATACAGTAATAGTAAATAGTGCTATGGAAATTATAGGATTGAGGTAAGCATGGTAGGTACTAGGGACTTGATATACACCAAGTTGATGTGATTAATCATAGACTGCATATGGATGAAGGATTTGCTAGGGTGGTTTGAATTGTCCACATTTTTGGTTCATGCATGACTGATCGATGTTACCCTTTTAATTTGATCATTCTTTTTGATATATTTACTGCATGAACAAATGACGAATTCTCTCCTGCTCTGGGTTATTGTAAATCTCTATTTCACATATCTGATGCAGTCTGATATAATATGGTCTGCTTAATGTCATACATCTAACAAATTGCTTCTGTGTAAAAATGAATGTTGCTAATAAACTTTAAATTCAACTCGCATGCCCTTGCGATTACCTTAACCATCTTAGGAGTCTCCACTTTGCTAACTTTCTCCTATTATTTAAAGGTTACCCCATCTGATGCACCGTTTCAGTAGGCGTAATCGTGCCTTTCCTTGTTGCTTTTGAATTTTTTTTACTTCTAATATCTATACACTTGTAAAACTGCTAAACCAGACGCTTTTGGAAATTGGATGGTGTAATACCTTTTCTTTTTATATTGAATATAAGGAGACTGCTTGAATGTCAGAAGATCCATTGGTTTTTGTTAGTTAAAGATAGTTCATAAGGTAAGTTGTATTCTTTTAACGATTCTTTTCACCTGCTTTTGTCTTCAGCGCACATTCCTCTGTATTTGTATCCGTTCCTGAACACAACAAGCAAATCGAGACCTTTTGAGTACTTGAGGCTTACTAGTCTTGGTGTCATCGGTGCATTAGTGAAGGTACTTCCTCCTTACTCATTCTGATGTTGGGTGGAAATAACTGTGAGATGACCTACATTTCATACGGTTACATTTTTACTGCAAAAATTAATTTGAAATAATAACAAAAAATTGTCCAAAAGATTCATCACAAAATCCTCGACACAACTCTTTATAATGGAATGAAAGTCCAACAACTTGTTTGGATGAATTCGTAAACTAGTGTTCCTCTATTTTTTGTTTTATATTATTATTATTATTGTTATTATTATTATTATTATTATTATCATCATCATCATCATTATTATTATTATATCATCTATGTTAGTGTTTTTCAATTTAGTCTGAATTTTCTGTTCACCAGGTTGATGATACTGAGGTTATTAGTTTTCTGCTTTCGACTGAAATAATTCCCCTGTGCCTGCGCACTATGGAGATGGGGAGTGAGCTCTCTAAAACGGTGAGTGTACTGATTCTTGATTGTCTGTCTTGGGTAAATTTATGCAAACACAGGCAAATCAGACTTTATTACCATCTCCTTAGCCACATTTTTCCTGTCAATGTTCGATTAACATTAATATATGCATTTGAAGTTATTTTCGTATTTCAATGCTGTGTTAGACATACGTATAATAAGTGCTTGTTTGTTTGTGCGGTGAGTGACCGCTACTACATGTTTAAAGTCAATCTCACCGTGGTATTGAGAAGCTAGTAGGTGTAGCTTTACGCCAACCGTGCCTTTTCACCTTGGTTTTGTTAGTTTCCAAACACATGCTAAATCAGTTTATGCATTCATACGTCATAGCACAAGATAAATAGATACTGTGAACTTATCACTTAAGAAGACTGCTTTTGATATTCTTGTTTTACCTTTTGGATAGCTGCTCCCAATCCAAGGGTTTAGCTATGGTCATGGGATTGTTTAAACTTTGCTGGGGATGTTTAATGTTATCAATATGTTATTTGAGTAATGGCATTTGTATGGGTTCAACTTTAAATACTATTTTGTCATTAGGATAAATTATTGAATACAATTTTTGGTCATTAGGATAAACTCTCGATCTTTTATTGTATAGATTTTAAGGCACCAGTTTATTTTATGTTGCCACTGTCTGGTTTCCCTATTAATGTATATGAGATAATAATAAAATTGAGCATGATAGTCTAACGAAGGCTCTGCTGCAACAGGTTGCAACATTTATTGTTCAAAAGATTCTGTTAGACGATGTGGGCTTGGACTATATTTGTACTACAGCTGAGCGCTTTTTCGCTGTTGGTCGAGTTCTTGGAAACATGGTGGCAGCTCTTGCTGAGCAACCATCATCTCGTCTGTTGAAGCATATCATTCGATGCTATCTTCGTCTGTCAGATAACCCGAGGTTTGTTAATAGGATTGCAACTTACTGCGAGTTCCTCCTTCCCCTCCTCCCTTTCTGCTGAAATTGCCTCTTTCATGCCCTTTCCTGCCAAGTTTCAAATGCCATCATTAATCAAACTCTTGGTCTTGTTAAATCAGGGCTTGTGATGCATTAAGAAGCTGTCTTCCTGACATGTTAAGGGATGCTACATTCAGCAGCTGCCTTCGTGTAAGTATTCCTTGTGATTACTACTCCCTCCATTCTTTTTTTGGTGTGATTTTACGATTATTTATACATACCAAGAAAACTAATAAATTGTTACTTTTGATTGAATATTTTGTTTTTGCCTACAATATCTAAACTATTTATTATCTAATTCCACCTGGTTTTTTCTCTGCAATAAACACTTAAGAGTATTATTGACAAAACAAAATTAATGTTTGAACTTTGAAAATGACTAGTAAATAAGAACAATTTTTTTCCTACATAAGTGACAAATAGAATCAGAGGGAGTAATTTTTAATCAATTAGGCCTTGACATCCAATGTAAAATTTTGTCGAATCTCTATGACTTGGACCAAATATGCAATAGTCTGTTGTTTGCTGAGTGAAATGGCATGAGTGAAGAAATCATTAACAATAGGTCCATGAGAAAGGTCGTAACTAGAACAATTCATCTTCTTCTCCAAATCTGTAATGTTAGAGCTGAAAATTTTCCATTCAGTCACTTTGAAAAAAAATTCATGATTTTAGTTTGTTTACAATTCTTATTTTTGGTTTTGTTTATTCAGGAGGACCCAACAACTAGGAAGTGGCTGCAACAACTGATTCACAATGTTGGAGGGAATCGGGTTCCTGCACTGCAAGGTGGAGGAGGTTTTGATCATCTAATGGTGAATTGA

Protein sequence

>MS.gene027005.t1

MNNTSSFGSIPPSPASSNSSSMASSEQLVLELSNPELRENALLELSKKREQFQDLAPLLWNSFGTIAALLQEIVSIYPVLSPPNLTPAQSNRVCNALALLQCVASHPDTRMLFLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKVDDTEVISFLLSTEIIPLCLRTMEMGSELSKTVATFIVQKILLDDVGLDYICTTAERFFAVGRVLGNMVAALAEQPSSRLLKHIIRCYLRLSDNPRACDALRSCLPDMLRDATFSSCLREDPTTRKWLQQLIHNVGGNRVPALQGGGGFDHLMVN