Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027037.t1 | XP_013459813.1 | 99 | 192 | 2 | 0 | 1 | 192 | 29 | 220 | 2.10E-111 | 411.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027037.t1 | A0A072UVJ3 | 99.0 | 192 | 2 | 0 | 1 | 192 | 29 | 220 | 1.5e-111 | 411.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene027037.t1 | TF | C2H2 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027037.t1 | MTR_3g052770 | 89.401 | 217 | 18 | 1 | 1 | 212 | 29 | 245 | 1.87e-145 | 406 |
| MS.gene027037.t1 | MTR_4g104230 | 59.813 | 214 | 81 | 1 | 4 | 212 | 36 | 249 | 8.87e-96 | 281 |
| MS.gene027037.t1 | MTR_4g104230 | 59.813 | 214 | 81 | 1 | 4 | 212 | 37 | 250 | 1.67e-95 | 280 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027037.t1 | AT5G63280 | 62.500 | 192 | 70 | 1 | 1 | 190 | 26 | 217 | 3.28e-92 | 271 |
| MS.gene027037.t1 | AT5G40710 | 60.606 | 198 | 75 | 1 | 15 | 209 | 44 | 241 | 9.09e-90 | 265 |
| MS.gene027037.t1 | AT5G40710 | 64.706 | 153 | 54 | 0 | 15 | 167 | 44 | 196 | 2.49e-75 | 228 |
Find 43 sgRNAs with CRISPR-Local
Find 157 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACACTCCAATTTACTTAATT+TGG | 0.122652 | 3.3:-43708483 | MS.gene027037:intron |
| AATGTTATTGTTCAGAATTC+TGG | 0.162180 | 3.3:-43708901 | MS.gene027037:intron |
| TAATACCAAATTAAGTAAAT+TGG | 0.257196 | 3.3:+43708478 | None:intergenic |
| GGATACAATTCCTGTGAAAT+TGG | 0.260612 | 3.3:-43706314 | MS.gene027037:CDS |
| TGTGACCATGAAATTAATTC+TGG | 0.266563 | 3.3:-43707478 | MS.gene027037:CDS |
| CCTGCAGCGAGCCGGCTTCA+TGG | 0.327309 | 3.3:-43707287 | MS.gene027037:intron |
| GCTGCAGGACCCTCGTTAAC+TGG | 0.349350 | 3.3:+43707302 | None:intergenic |
| TTGACCCAGAATTAATTTCA+TGG | 0.350995 | 3.3:+43707473 | None:intergenic |
| TCAAATTACCCTGCGCCCTC+TGG | 0.382051 | 3.3:+43707117 | None:intergenic |
| TTATTTCTTGCTGCAGCAGC+AGG | 0.412858 | 3.3:+43707433 | None:intergenic |
| TCTCTATATATATCATTGTC+AGG | 0.427562 | 3.3:+43708611 | None:intergenic |
| TCGATAGGATGTTATACTTA+GGG | 0.444972 | 3.3:-43706335 | MS.gene027037:intron |
| GTCGATAGGATGTTATACTT+AGG | 0.449944 | 3.3:-43706336 | MS.gene027037:intron |
| ATTGTTCAGAATTCTGGATC+AGG | 0.460914 | 3.3:-43708895 | MS.gene027037:intron |
| CCATGAAGCCGGCTCGCTGC+AGG | 0.478890 | 3.3:+43707287 | None:intergenic |
| GCAGTATTTGACGACATTTG+TGG | 0.483411 | 3.3:-43708675 | MS.gene027037:intron |
| GAGAAAGAAGTAGAATAGCT+TGG | 0.485109 | 3.3:-43708839 | MS.gene027037:CDS |
| TGTGATGCTCACACCTGCAC+TGG | 0.492800 | 3.3:-43707157 | MS.gene027037:CDS |
| GTGACCATGAAATTAATTCT+GGG | 0.499220 | 3.3:-43707477 | MS.gene027037:CDS |
| GCTCACACCTGCACTGGACG+TGG | 0.502873 | 3.3:-43707151 | MS.gene027037:CDS |
| AGGCTTTCCACGTCCAGTGC+AGG | 0.511555 | 3.3:+43707144 | None:intergenic |
| CTCATATAGATATAAATGAA+TGG | 0.514723 | 3.3:-43708571 | MS.gene027037:CDS |
| CAATGATATATATAGAGATC+AGG | 0.516644 | 3.3:-43708606 | MS.gene027037:CDS |
| ACCCTGCGCCCTCTGGAGAA+AGG | 0.523388 | 3.3:+43707124 | None:intergenic |
| AGCCTTTCTCCAGAGGGCGC+AGG | 0.526816 | 3.3:-43707126 | MS.gene027037:CDS |
| ACGAGGGTCCTGCAGCGAGC+CGG | 0.531828 | 3.3:-43707295 | MS.gene027037:CDS |
| ATAATATCTCAAGAAGGTGC+AGG | 0.547108 | 3.3:-43708640 | MS.gene027037:CDS |
| ACAACTGCAACCAATTTCAC+AGG | 0.563024 | 3.3:+43706304 | None:intergenic |
| GCCTTTCTCCAGAGGGCGCA+GGG | 0.563120 | 3.3:-43707125 | MS.gene027037:intron |
| TGGAAAACAACTATCAGCTA+TGG | 0.566317 | 3.3:+43707322 | None:intergenic |
| CACATACATCTGCTAAGCAC+CGG | 0.569311 | 3.3:+43707512 | None:intergenic |
| CTCTATATATATCATTGTCA+GGG | 0.590660 | 3.3:+43708612 | None:intergenic |
| ATATTGAAATACCATGAAGC+CGG | 0.593494 | 3.3:+43707276 | None:intergenic |
| TTGCAGCATCTGAATCTACA+TGG | 0.597085 | 3.3:+43709328 | None:intergenic |
| CGGTGCTTAGCAGATGTATG+TGG | 0.600256 | 3.3:-43707511 | MS.gene027037:CDS |
| ATGTAGATTCAGATGCTGCA+AGG | 0.607887 | 3.3:-43709326 | MS.gene027037:intron |
| CGTGGAAAGCCTTTCTCCAG+AGG | 0.614403 | 3.3:-43707133 | MS.gene027037:CDS |
| AGCTTGGAAGATCGTTCAAG+AGG | 0.626181 | 3.3:-43708823 | MS.gene027037:intron |
| AAGAAATAAGCATATATGTG+AGG | 0.634147 | 3.3:-43707419 | MS.gene027037:intron |
| GTGGAAAGCCTTTCTCCAGA+GGG | 0.645090 | 3.3:-43707132 | MS.gene027037:CDS |
| GCTGAATCCAGAAAGAAAGC+CGG | 0.646951 | 3.3:-43707531 | MS.gene027037:intron |
| GATATAAATGAATGGCAGTG+TGG | 0.647971 | 3.3:-43708563 | MS.gene027037:CDS |
| ATTCTGGATCAGGAGCAGAG+TGG | 0.757422 | 3.3:-43708885 | MS.gene027037:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATTCTTTTAAAATTTCT+AGG | + | chr3.3:43707877-43707896 | None:intergenic | 10.0% |
| !!! | AGAAATTAGAATATAATTTT+AGG | + | chr3.3:43708231-43708250 | None:intergenic | 10.0% |
| !!! | ATAATAATTTTAGAAAATAG+AGG | + | chr3.3:43707445-43707464 | None:intergenic | 10.0% |
| !!! | ATTTTTTGGAAATATTAATA+TGG | - | chr3.3:43707286-43707305 | MS.gene027037:intron | 10.0% |
| !!! | CTATTTTCTAAAATTATTAT+TGG | - | chr3.3:43707445-43707464 | MS.gene027037:CDS | 10.0% |
| !!! | GAAATTTTAAAAGAATTTTA+AGG | - | chr3.3:43707878-43707897 | MS.gene027037:intron | 10.0% |
| !! | AAAAATATAATATCTCAAGA+AGG | - | chr3.3:43706942-43706961 | MS.gene027037:intron | 15.0% |
| !! | TAAATATCATTGTTTAAACT+AGG | - | chr3.3:43707783-43707802 | MS.gene027037:intron | 15.0% |
| !! | TAATACCAAATTAAGTAAAT+TGG | + | chr3.3:43707113-43707132 | None:intergenic | 15.0% |
| !!! | AAAATATTTTTACCTTTTCT+TGG | - | chr3.3:43706613-43706632 | MS.gene027037:intron | 15.0% |
| !!! | ATTAATATGGTTATTTTATG+AGG | - | chr3.3:43707299-43707318 | MS.gene027037:CDS | 15.0% |
| !!! | TAAAATTGTATTGATTCTAT+TGG | + | chr3.3:43707146-43707165 | None:intergenic | 15.0% |
| !! | ATTAACTATATCATGAATGA+TGG | + | chr3.3:43707257-43707276 | None:intergenic | 20.0% |
| !! | CTCATATAGATATAAATGAA+TGG | - | chr3.3:43707017-43707036 | MS.gene027037:intron | 20.0% |
| !! | TATTAAATGATGTCAAATAG+TGG | - | chr3.3:43708609-43708628 | MS.gene027037:CDS | 20.0% |
| !! | TTGCAGAATTTGTATATTTA+TGG | - | chr3.3:43708348-43708367 | MS.gene027037:intron | 20.0% |
| !!! | ACTGTTTTTATAAGCTATAT+TGG | + | chr3.3:43709035-43709054 | None:intergenic | 20.0% |
| !!! | TTTCCAGAAATCTTTATTTT+TGG | - | chr3.3:43708770-43708789 | MS.gene027037:intron | 20.0% |
| ! | AAGAAATAAGCATATATGTG+AGG | - | chr3.3:43708169-43708188 | MS.gene027037:intron | 25.0% |
| ! | AATGTTATTGTTCAGAATTC+TGG | - | chr3.3:43706687-43706706 | MS.gene027037:intron | 25.0% |
| ! | ACACTCCAATTTACTTAATT+TGG | - | chr3.3:43707105-43707124 | MS.gene027037:intron | 25.0% |
| ! | ACTAAAGTAAACAAACACAT+TGG | - | chr3.3:43706461-43706480 | MS.gene027037:intron | 25.0% |
| ! | ACTAGTTATTTGATCAACAA+TGG | + | chr3.3:43707178-43707197 | None:intergenic | 25.0% |
| ! | AGAATTCTGTCAAATTGTTA+AGG | + | chr3.3:43708397-43708416 | None:intergenic | 25.0% |
| ! | AGGATAAACTTGTAAAACAA+TGG | - | chr3.3:43708881-43708900 | MS.gene027037:CDS | 25.0% |
| ! | ATGTTCTTAAATATTAGGCT+TGG | + | chr3.3:43707607-43707626 | None:intergenic | 25.0% |
| ! | CAAGCATGTTCTTAAATATT+AGG | + | chr3.3:43707612-43707631 | None:intergenic | 25.0% |
| ! | CAATGATATATATAGAGATC+AGG | - | chr3.3:43706982-43707001 | MS.gene027037:intron | 25.0% |
| ! | CTCTATATATATCATTGTCA+GGG | + | chr3.3:43706979-43706998 | None:intergenic | 25.0% |
| ! | GATGATTCTATTATCATCAA+TGG | - | chr3.3:43706375-43706394 | MS.gene027037:intron | 25.0% |
| ! | GTTATTGAATGTAGCTATAT+AGG | - | chr3.3:43706531-43706550 | MS.gene027037:intron | 25.0% |
| ! | TATCCAATATTGATGTATGT+CGG | + | chr3.3:43706854-43706873 | None:intergenic | 25.0% |
| ! | TCAATTTCTTTACTTCTTAG+TGG | + | chr3.3:43706509-43706528 | None:intergenic | 25.0% |
| ! | TCACCAAAAATAAAGATTTC+TGG | + | chr3.3:43708776-43708795 | None:intergenic | 25.0% |
| ! | TCTCTATATATATCATTGTC+AGG | + | chr3.3:43706980-43706999 | None:intergenic | 25.0% |
| ! | TGTAAAACAATGGACATATT+TGG | - | chr3.3:43708891-43708910 | MS.gene027037:intron | 25.0% |
| ! | TTGGAGAACTTAATGAAAAT+AGG | + | chr3.3:43709016-43709035 | None:intergenic | 25.0% |
| ! | TTGTGTAGATAATACTATGA+TGG | - | chr3.3:43708832-43708851 | MS.gene027037:CDS | 25.0% |
| ! | TTGTTAAATAGATGCTATAG+TGG | - | chr3.3:43708529-43708548 | MS.gene027037:CDS | 25.0% |
| ! | TTGTTGATCAAATAACTAGT+TGG | - | chr3.3:43707178-43707197 | MS.gene027037:CDS | 25.0% |
| ! | TTTAAGGGAAGTAAAATTTC+AGG | + | chr3.3:43707724-43707743 | None:intergenic | 25.0% |
| !! | GTTAAACCTTCTGAAAATTT+CGG | - | chr3.3:43707975-43707994 | MS.gene027037:intron | 25.0% |
| !! | TAATACCAAAGAGCATATTA+CGG | + | chr3.3:43708594-43708613 | None:intergenic | 25.0% |
| !! | TTAAAATTTCTAGGTCAACA+GGG | + | chr3.3:43707868-43707887 | None:intergenic | 25.0% |
| !! | TTAAACTAGGCTAAGTTTTA+AGG | - | chr3.3:43707796-43707815 | MS.gene027037:intron | 25.0% |
| !! | TTGGATTAGATTGAAGTAAT+CGG | - | chr3.3:43707227-43707246 | MS.gene027037:intron | 25.0% |
| !! | TTTAAAATTTCTAGGTCAAC+AGG | + | chr3.3:43707869-43707888 | None:intergenic | 25.0% |
| !!! | AATCCGTTGATAATTGATAT+TGG | + | chr3.3:43709195-43709214 | None:intergenic | 25.0% |
| !!! | ATCCGTTGATAATTGATATT+GGG | + | chr3.3:43709194-43709213 | None:intergenic | 25.0% |
| !!! | CATTTGAGTCATTTTATAGT+TGG | + | chr3.3:43706804-43706823 | None:intergenic | 25.0% |
| !!! | CTTTTTTCAATTAGAAGTGT+CGG | - | chr3.3:43706587-43706606 | MS.gene027037:intron | 25.0% |
| !!! | GAAATCTTTATTTTTGGTGA+AGG | - | chr3.3:43708776-43708795 | MS.gene027037:intron | 25.0% |
| !!! | GGAATTAAAAAAGTTTGTTG+TGG | + | chr3.3:43709223-43709242 | None:intergenic | 25.0% |
| AAACTACAGCAATCAAACAA+AGG | + | chr3.3:43707837-43707856 | None:intergenic | 30.0% | |
| AATAAGTTGTTTATCCACAC+AGG | - | chr3.3:43709168-43709187 | MS.gene027037:intron | 30.0% | |
| ACAAGATAACATGTAGAGTT+TGG | + | chr3.3:43708743-43708762 | None:intergenic | 30.0% | |
| ACGGAAAAAAAAAACCAGTT+TGG | - | chr3.3:43707208-43707227 | MS.gene027037:intron | 30.0% | |
| ATAAGTTTCCTGAGACTATT+TGG | - | chr3.3:43708942-43708961 | MS.gene027037:intron | 30.0% | |
| ATATTGAAATACCATGAAGC+CGG | + | chr3.3:43708315-43708334 | None:intergenic | 30.0% | |
| ATTAGATTGAAGTAATCGGA+TGG | - | chr3.3:43707231-43707250 | MS.gene027037:intron | 30.0% | |
| CAAGCATATAAACCAAGAAA+AGG | + | chr3.3:43706628-43706647 | None:intergenic | 30.0% | |
| GATGAAATCAAGAGTCATTA+AGG | - | chr3.3:43709332-43709351 | MS.gene027037:CDS | 30.0% | |
| GATGATGCTAAATATGAAAG+TGG | + | chr3.3:43707753-43707772 | None:intergenic | 30.0% | |
| GGAAGTAAAATTTCAGGATT+TGG | + | chr3.3:43707718-43707737 | None:intergenic | 30.0% | |
| GTGACCATGAAATTAATTCT+GGG | - | chr3.3:43708111-43708130 | MS.gene027037:intron | 30.0% | |
| TAAGTTTCCTGAGACTATTT+GGG | - | chr3.3:43708943-43708962 | MS.gene027037:intron | 30.0% | |
| TACTTCAATCTAATCCAAAC+TGG | + | chr3.3:43707225-43707244 | None:intergenic | 30.0% | |
| TCGATAGGATGTTATACTTA+GGG | - | chr3.3:43709253-43709272 | MS.gene027037:intron | 30.0% | |
| TGTGACCATGAAATTAATTC+TGG | - | chr3.3:43708110-43708129 | MS.gene027037:intron | 30.0% | |
| TTAATTACAAGTGTCAGTGT+CGG | + | chr3.3:43707413-43707432 | None:intergenic | 30.0% | |
| TTGACCCAGAATTAATTTCA+TGG | + | chr3.3:43708118-43708137 | None:intergenic | 30.0% | |
| TTGATCAAATAACTAGTTGG+TGG | - | chr3.3:43707181-43707200 | MS.gene027037:intron | 30.0% | |
| ! | ATTGTTTTCATGTTTTGTCC+AGG | + | chr3.3:43707643-43707662 | None:intergenic | 30.0% |
| ! | GTTTTACAAGTTTATCCTTC+AGG | + | chr3.3:43708879-43708898 | None:intergenic | 30.0% |
| ! | TAAAATTTCTAGGTCAACAG+GGG | + | chr3.3:43707867-43707886 | None:intergenic | 30.0% |
| ! | TACTAACTCACAACTTGTTT+CGG | + | chr3.3:43707670-43707689 | None:intergenic | 30.0% |
| !! | AGTCAGTTTTAATGTCTGAT+TGG | - | chr3.3:43706287-43706306 | MS.gene027037:CDS | 30.0% |
| !! | ATAACTAGTTGGTGGAAAAA+CGG | - | chr3.3:43707189-43707208 | MS.gene027037:intron | 30.0% |
| !! | TGGTTATTTTATGAGGAACT+TGG | - | chr3.3:43707306-43707325 | MS.gene027037:CDS | 30.0% |
| !! | TTTTAAGGATAAACACCTGT+TGG | - | chr3.3:43707893-43707912 | MS.gene027037:intron | 30.0% |
| !!! | ATGTCTGATTGGAAGTATTT+TGG | - | chr3.3:43706298-43706317 | MS.gene027037:CDS | 30.0% |
| AACCTAATTATCTCTCCTGA+AGG | - | chr3.3:43708861-43708880 | MS.gene027037:CDS | 35.0% | |
| AATGTAGCTATATAGGTCAG+TGG | - | chr3.3:43706538-43706557 | MS.gene027037:intron | 35.0% | |
| ATCCTTCAGGAGAGATAATT+AGG | + | chr3.3:43708866-43708885 | None:intergenic | 35.0% | |
| ATTCCAGTGATTTAGTCGAT+AGG | - | chr3.3:43709238-43709257 | MS.gene027037:intron | 35.0% | |
| ATTGTTCAGAATTCTGGATC+AGG | - | chr3.3:43706693-43706712 | MS.gene027037:intron | 35.0% | |
| CTCTGCTCAATTTATCGTAA+TGG | - | chr3.3:43708005-43708024 | MS.gene027037:intron | 35.0% | |
| GAGAAAGAAGTAGAATAGCT+TGG | - | chr3.3:43706749-43706768 | MS.gene027037:intron | 35.0% | |
| GATATAAATGAATGGCAGTG+TGG | - | chr3.3:43707025-43707044 | MS.gene027037:intron | 35.0% | |
| GGATACAATTCCTGTGAAAT+TGG | - | chr3.3:43709274-43709293 | MS.gene027037:intron | 35.0% | |
| GGCCCAATATCAATTATCAA+CGG | - | chr3.3:43709189-43709208 | MS.gene027037:intron | 35.0% | |
| GTCGATAGGATGTTATACTT+AGG | - | chr3.3:43709252-43709271 | MS.gene027037:intron | 35.0% | |
| TGACCGACATACATCAATAT+TGG | - | chr3.3:43706848-43706867 | MS.gene027037:intron | 35.0% | |
| TGCTAACTATTTCCTTGAGA+AGG | - | chr3.3:43707549-43707568 | MS.gene027037:intron | 35.0% | |
| TGGAAAACAACTATCAGCTA+TGG | + | chr3.3:43708269-43708288 | None:intergenic | 35.0% | |
| TTGTTCCGTAATATGCTCTT+TGG | - | chr3.3:43708586-43708605 | MS.gene027037:CDS | 35.0% | |
| ! | AAGCTACCGAAATTTTCAGA+AGG | + | chr3.3:43707984-43708003 | None:intergenic | 35.0% |
| ! | ATAATATCTCAAGAAGGTGC+AGG | - | chr3.3:43706948-43706967 | MS.gene027037:intron | 35.0% |
| ! | CTAATTGAAAAAAGCGTGTC+AGG | + | chr3.3:43706581-43706600 | None:intergenic | 35.0% |
| ! | TCTAAGCTGATAGTGTATGA+AGG | - | chr3.3:43707346-43707365 | MS.gene027037:intron | 35.0% |
| !! | AGTTGTTTTCCAGTTAACGA+GGG | - | chr3.3:43708277-43708296 | MS.gene027037:intron | 35.0% |
| !! | ATGAAAGTGGTGTTGCTTTA+AGG | + | chr3.3:43707740-43707759 | None:intergenic | 35.0% |
| !! | TAGTTGTTTTCCAGTTAACG+AGG | - | chr3.3:43708276-43708295 | MS.gene027037:intron | 35.0% |
| !! | TCAACAATGAAGCATTGACA+CGG | + | chr3.3:43707505-43707524 | None:intergenic | 35.0% |
| !! | TGAAAGTGGTGTTGCTTTAA+GGG | + | chr3.3:43707739-43707758 | None:intergenic | 35.0% |
| ACAACTGCAACCAATTTCAC+AGG | + | chr3.3:43709287-43709306 | None:intergenic | 40.0% | |
| ATGTAGATTCAGATGCTGCA+AGG | - | chr3.3:43706262-43706281 | MS.gene027037:CDS | 40.0% | |
| ATGTCAAATAGTGGCTAACG+TGG | - | chr3.3:43708618-43708637 | MS.gene027037:CDS | 40.0% | |
| GCAGTATTTGACGACATTTG+TGG | - | chr3.3:43706913-43706932 | MS.gene027037:intron | 40.0% | |
| TAACCACAAATCACTCCAAC+AGG | + | chr3.3:43707911-43707930 | None:intergenic | 40.0% | |
| TAATTGATATTGGGCCTGTG+TGG | + | chr3.3:43709185-43709204 | None:intergenic | 40.0% | |
| TCAAATTCCGCTACACAACA+GGG | + | chr3.3:43708652-43708671 | None:intergenic | 40.0% | |
| TTCAAATTCCGCTACACAAC+AGG | + | chr3.3:43708653-43708672 | None:intergenic | 40.0% | |
| TTGCAGCATCTGAATCTACA+TGG | + | chr3.3:43706263-43706282 | None:intergenic | 40.0% | |
| TTTGCAGCTTATAGCACAAG+TGG | + | chr3.3:43709150-43709169 | None:intergenic | 40.0% | |
| ! | ATGCCTTCAATCTGAGGTAT+CGG | + | chr3.3:43707373-43707392 | None:intergenic | 40.0% |
| ! | CATCCTATCGACTAAATCAC+TGG | + | chr3.3:43709244-43709263 | None:intergenic | 40.0% |
| ! | CTTGTGCTTTTCTTGCTTGT+CGG | - | chr3.3:43706644-43706663 | MS.gene027037:intron | 40.0% |
| ! | CTTTTCTTGCTTGTCGGAAT+TGG | - | chr3.3:43706650-43706669 | MS.gene027037:intron | 40.0% |
| !! | TTGTCATAAGCCGTTTTCAC+AGG | + | chr3.3:43708973-43708992 | None:intergenic | 40.0% |
| !!! | CTGCTTTTTGCTTAGCTGTA+AGG | - | chr3.3:43709310-43709329 | MS.gene027037:intron | 40.0% |
| AAGGCATGTCTGACATGTGT+CGG | - | chr3.3:43707386-43707405 | MS.gene027037:intron | 45.0% | |
| ACACCTGTTGGAGTGATTTG+TGG | - | chr3.3:43707905-43707924 | MS.gene027037:intron | 45.0% | |
| AGCTTGGAAGATCGTTCAAG+AGG | - | chr3.3:43706765-43706784 | MS.gene027037:intron | 45.0% | |
| ATCTGTGGTTGACGACACTT+TGG | - | chr3.3:43708692-43708711 | MS.gene027037:intron | 45.0% | |
| CACATACATCTGCTAAGCAC+CGG | + | chr3.3:43708079-43708098 | None:intergenic | 45.0% | |
| CTTGCTTGTCGGAATTGGTA+TGG | - | chr3.3:43706655-43706674 | MS.gene027037:intron | 45.0% | |
| GAGCTCAGAAAAGTCCAAGA+TGG | + | chr3.3:43707577-43707596 | None:intergenic | 45.0% | |
| GCTGAATCCAGAAAGAAAGC+CGG | - | chr3.3:43708057-43708076 | MS.gene027037:intron | 45.0% | |
| GTTATAGCCCTGTTGTGTAG+CGG | - | chr3.3:43708642-43708661 | MS.gene027037:CDS | 45.0% | |
| TCAGACATGCCTTCAATCTG+AGG | + | chr3.3:43707379-43707398 | None:intergenic | 45.0% | |
| TCCAAGATGGTACCTTCTCA+AGG | + | chr3.3:43707564-43707583 | None:intergenic | 45.0% | |
| TTTGGGAGAGCCTGTGAAAA+CGG | - | chr3.3:43708960-43708979 | MS.gene027037:intron | 45.0% | |
| ! | TTATTTCTTGCTGCAGCAGC+AGG | + | chr3.3:43708158-43708177 | None:intergenic | 45.0% |
| !! | TCCTTGAGAAGGTACCATCT+TGG | - | chr3.3:43707560-43707579 | MS.gene027037:intron | 45.0% |
| !! | TGAAGCATTGACACGGACAT+TGG | + | chr3.3:43707498-43707517 | None:intergenic | 45.0% |
| !!! | GTGCTATTTTCTGCGATCTG+TGG | - | chr3.3:43708677-43708696 | MS.gene027037:intron | 45.0% |
| !!! | TTAATAAATGTTATATTTTT+TGG | - | chr3.3:43707272-43707291 | MS.gene027037:intron | 5.0% |
| AACATGCTTGAGTCGTGTCC+TGG | - | chr3.3:43707622-43707641 | MS.gene027037:intron | 50.0% | |
| AGGCTCTCCCAAATAGTCTC+AGG | + | chr3.3:43708953-43708972 | None:intergenic | 50.0% | |
| ATTCTGGATCAGGAGCAGAG+TGG | - | chr3.3:43706703-43706722 | MS.gene027037:intron | 50.0% | |
| CGGTGCTTAGCAGATGTATG+TGG | - | chr3.3:43708077-43708096 | MS.gene027037:intron | 50.0% | |
| GGACCGATACCTCAGATTGA+AGG | - | chr3.3:43707367-43707386 | MS.gene027037:intron | 50.0% | |
| GTGGAAAGCCTTTCTCCAGA+GGG | - | chr3.3:43708456-43708475 | MS.gene027037:intron | 50.0% | |
| !! | CTAAGCACCGGCTTTCTTTC+TGG | + | chr3.3:43708067-43708086 | None:intergenic | 50.0% |
| CGTGGAAAGCCTTTCTCCAG+AGG | - | chr3.3:43708455-43708474 | MS.gene027037:intron | 55.0% | |
| TCAAATTACCCTGCGCCCTC+TGG | + | chr3.3:43708474-43708493 | None:intergenic | 55.0% | |
| TGTGATGCTCACACCTGCAC+TGG | - | chr3.3:43708431-43708450 | MS.gene027037:intron | 55.0% | |
| AGGCTTTCCACGTCCAGTGC+AGG | + | chr3.3:43708447-43708466 | None:intergenic | 60.0% | |
| GCTGCAGGACCCTCGTTAAC+TGG | + | chr3.3:43708289-43708308 | None:intergenic | 60.0% | |
| GCTCACACCTGCACTGGACG+TGG | - | chr3.3:43708437-43708456 | MS.gene027037:intron | 65.0% | |
| ! | ACCCTGCGCCCTCTGGAGAA+AGG | + | chr3.3:43708467-43708486 | None:intergenic | 65.0% |
| ! | AGCCTTTCTCCAGAGGGCGC+AGG | - | chr3.3:43708462-43708481 | MS.gene027037:intron | 65.0% |
| ! | GCCTTTCTCCAGAGGGCGCA+GGG | - | chr3.3:43708463-43708482 | MS.gene027037:intron | 65.0% |
| ACGAGGGTCCTGCAGCGAGC+CGG | - | chr3.3:43708293-43708312 | MS.gene027037:intron | 70.0% | |
| ! | CCTGCAGCGAGCCGGCTTCA+TGG | - | chr3.3:43708301-43708320 | MS.gene027037:intron | 70.0% |
| !! | CCATGAAGCCGGCTCGCTGC+AGG | + | chr3.3:43708304-43708323 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 43706258 | 43709352 | 43706258 | ID=MS.gene027037 |
| chr3.3 | mRNA | 43706258 | 43709352 | 43706258 | ID=MS.gene027037.t1;Parent=MS.gene027037 |
| chr3.3 | exon | 43709327 | 43709352 | 43709327 | ID=MS.gene027037.t1.exon1;Parent=MS.gene027037.t1 |
| chr3.3 | CDS | 43709327 | 43709352 | 43709327 | ID=cds.MS.gene027037.t1;Parent=MS.gene027037.t1 |
| chr3.3 | exon | 43708824 | 43708908 | 43708824 | ID=MS.gene027037.t1.exon2;Parent=MS.gene027037.t1 |
| chr3.3 | CDS | 43708824 | 43708908 | 43708824 | ID=cds.MS.gene027037.t1;Parent=MS.gene027037.t1 |
| chr3.3 | exon | 43708484 | 43708693 | 43708484 | ID=MS.gene027037.t1.exon3;Parent=MS.gene027037.t1 |
| chr3.3 | CDS | 43708484 | 43708693 | 43708484 | ID=cds.MS.gene027037.t1;Parent=MS.gene027037.t1 |
| chr3.3 | exon | 43707420 | 43707542 | 43707420 | ID=MS.gene027037.t1.exon4;Parent=MS.gene027037.t1 |
| chr3.3 | CDS | 43707420 | 43707542 | 43707420 | ID=cds.MS.gene027037.t1;Parent=MS.gene027037.t1 |
| chr3.3 | exon | 43707288 | 43707345 | 43707288 | ID=MS.gene027037.t1.exon5;Parent=MS.gene027037.t1 |
| chr3.3 | CDS | 43707288 | 43707345 | 43707288 | ID=cds.MS.gene027037.t1;Parent=MS.gene027037.t1 |
| chr3.3 | exon | 43707126 | 43707199 | 43707126 | ID=MS.gene027037.t1.exon6;Parent=MS.gene027037.t1 |
| chr3.3 | CDS | 43707126 | 43707199 | 43707126 | ID=cds.MS.gene027037.t1;Parent=MS.gene027037.t1 |
| chr3.3 | exon | 43706258 | 43706350 | 43706258 | ID=MS.gene027037.t1.exon7;Parent=MS.gene027037.t1 |
| chr3.3 | CDS | 43706258 | 43706350 | 43706258 | ID=cds.MS.gene027037.t1;Parent=MS.gene027037.t1 |
| Gene Sequence |
| Protein sequence |
