Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027256.t1 | RHN70244.1 | 94.9 | 295 | 15 | 0 | 6 | 300 | 1029 | 1323 | 1.50E-155 | 558.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027256.t1 | Q9FWQ5 | 41.3 | 303 | 145 | 4 | 6 | 295 | 1393 | 1675 | 2.8e-70 | 266.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027256.t1 | A0A396J0M7 | 94.9 | 295 | 15 | 0 | 6 | 300 | 1029 | 1323 | 1.1e-155 | 558.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene027256.t1 | TR | TAZ |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027256.t1 | MTR_3g101100 | 92.027 | 301 | 18 | 1 | 6 | 300 | 1075 | 1375 | 0.0 | 581 |
| MS.gene027256.t1 | MTR_3g107960 | 80.339 | 295 | 50 | 2 | 6 | 300 | 900 | 1186 | 9.27e-166 | 493 |
| MS.gene027256.t1 | MTR_5g085310 | 66.102 | 295 | 48 | 2 | 6 | 300 | 779 | 1021 | 2.59e-126 | 385 |
| MS.gene027256.t1 | MTR_6g017010 | 64.310 | 297 | 51 | 3 | 6 | 300 | 509 | 752 | 9.00e-124 | 372 |
| MS.gene027256.t1 | MTR_4g005050 | 41.914 | 303 | 142 | 5 | 6 | 295 | 1397 | 1678 | 6.48e-78 | 259 |
| MS.gene027256.t1 | MTR_5g017020 | 62.326 | 215 | 26 | 3 | 27 | 239 | 364 | 525 | 2.07e-76 | 243 |
| MS.gene027256.t1 | MTR_5g017020 | 61.692 | 201 | 24 | 2 | 27 | 227 | 364 | 511 | 6.85e-70 | 227 |
| MS.gene027256.t1 | MTR_0299s0030 | 73.770 | 122 | 28 | 1 | 6 | 127 | 182 | 299 | 3.91e-57 | 188 |
| MS.gene027256.t1 | MTR_6g017000 | 65.354 | 127 | 44 | 0 | 6 | 132 | 818 | 944 | 4.92e-51 | 181 |
| MS.gene027256.t1 | MTR_6g017130 | 72.826 | 92 | 20 | 2 | 49 | 140 | 249 | 335 | 8.03e-35 | 130 |
| MS.gene027256.t1 | MTR_6g017130 | 77.358 | 53 | 12 | 0 | 243 | 295 | 330 | 382 | 7.03e-20 | 89.4 |
| MS.gene027256.t1 | MTR_6g017140 | 58.163 | 98 | 41 | 0 | 6 | 103 | 356 | 453 | 6.69e-33 | 126 |
| MS.gene027256.t1 | MTR_1g047940 | 54.167 | 96 | 20 | 1 | 205 | 300 | 117 | 188 | 9.29e-23 | 94.0 |
| MS.gene027256.t1 | MTR_1g047940 | 80.000 | 35 | 7 | 0 | 72 | 106 | 71 | 105 | 6.65e-12 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027256.t1 | AT1G16710 | 42.000 | 300 | 147 | 4 | 6 | 295 | 1393 | 1675 | 1.02e-79 | 264 |
| MS.gene027256.t1 | AT1G16710 | 42.000 | 300 | 147 | 4 | 6 | 295 | 1367 | 1649 | 1.04e-79 | 264 |
| MS.gene027256.t1 | AT1G16710 | 42.000 | 300 | 147 | 4 | 6 | 295 | 1367 | 1649 | 1.04e-79 | 264 |
| MS.gene027256.t1 | AT1G16710 | 42.000 | 300 | 147 | 4 | 6 | 295 | 1367 | 1649 | 1.04e-79 | 264 |
| MS.gene027256.t1 | AT1G16710 | 42.000 | 300 | 147 | 4 | 6 | 295 | 1367 | 1649 | 1.04e-79 | 264 |
| MS.gene027256.t1 | AT1G16710 | 42.000 | 300 | 147 | 4 | 6 | 295 | 1364 | 1646 | 1.22e-79 | 264 |
| MS.gene027256.t1 | AT1G16710 | 42.000 | 300 | 147 | 4 | 6 | 295 | 1328 | 1610 | 1.45e-79 | 264 |
| MS.gene027256.t1 | AT1G16710 | 42.000 | 300 | 147 | 4 | 6 | 295 | 1328 | 1610 | 1.45e-79 | 264 |
| MS.gene027256.t1 | AT1G16710 | 42.000 | 300 | 147 | 4 | 6 | 295 | 1328 | 1610 | 1.45e-79 | 264 |
| MS.gene027256.t1 | AT1G79000 | 42.000 | 300 | 147 | 4 | 6 | 295 | 1384 | 1666 | 4.83e-79 | 262 |
| MS.gene027256.t1 | AT1G79000 | 42.000 | 300 | 147 | 4 | 6 | 295 | 1360 | 1642 | 6.43e-79 | 262 |
| MS.gene027256.t1 | AT1G79000 | 42.000 | 300 | 147 | 4 | 6 | 295 | 1384 | 1666 | 6.94e-79 | 262 |
| MS.gene027256.t1 | AT3G12980 | 38.889 | 306 | 152 | 7 | 6 | 301 | 1364 | 1644 | 2.34e-66 | 226 |
| MS.gene027256.t1 | AT3G12980 | 38.889 | 306 | 152 | 7 | 6 | 301 | 1283 | 1563 | 2.34e-66 | 226 |
| MS.gene027256.t1 | AT1G55970 | 36.149 | 296 | 162 | 6 | 6 | 292 | 1146 | 1423 | 1.37e-56 | 197 |
| MS.gene027256.t1 | AT1G55970 | 36.149 | 296 | 162 | 6 | 6 | 292 | 1160 | 1437 | 1.44e-56 | 197 |
| MS.gene027256.t1 | AT1G67220 | 31.457 | 302 | 170 | 8 | 8 | 293 | 1081 | 1361 | 3.70e-43 | 159 |
Find 58 sgRNAs with CRISPR-Local
Find 93 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCTGGTAGGCCATATATTT+TGG | 0.151804 | 3.4:-45071384 | None:intergenic |
| AGAGTAGATTATTTGAAAAT+AGG | 0.198691 | 3.4:+45071852 | MS.gene027256:CDS |
| TCTCACATTTCCAGCTCTTT+TGG | 0.200246 | 3.4:-45072030 | None:intergenic |
| CACTGAATGCAAGGAAATTC+AGG | 0.241855 | 3.4:+45071486 | MS.gene027256:CDS |
| ATTAGGTTGGCCAAAATATA+TGG | 0.272286 | 3.4:+45071374 | MS.gene027256:intron |
| TGATTCCTTGATTGATATAT+TGG | 0.275033 | 3.4:-45072184 | None:intergenic |
| GAGTAGATTATTTGAAAATA+GGG | 0.292484 | 3.4:+45071853 | MS.gene027256:CDS |
| TTTGAGTCAACTTGTGTTCA+TGG | 0.292920 | 3.4:-45072108 | None:intergenic |
| CATTTGCTCTGCATGCTATA+AGG | 0.316886 | 3.4:+45072069 | MS.gene027256:CDS |
| ATATCATTATGTTTAGTGTT+GGG | 0.350862 | 3.4:-45071821 | None:intergenic |
| GTGCGAAATTCGAGTGAATC+GGG | 0.363640 | 3.4:+45072429 | MS.gene027256:CDS |
| TCAGAGTAGGATTGTGTAGA+TGG | 0.383953 | 3.4:-45071961 | None:intergenic |
| AATATATCAATCAAGGAATC+AGG | 0.398544 | 3.4:+45072186 | MS.gene027256:CDS |
| TGCAACTCGCCATTCTTTGA+TGG | 0.413348 | 3.4:-45071678 | None:intergenic |
| CACTCGAATTTCGCACCTAC+TGG | 0.416982 | 3.4:-45072422 | None:intergenic |
| CGAGTTGCATACACTTTGTC+AGG | 0.417455 | 3.4:+45071692 | MS.gene027256:CDS |
| ATCAGGAGTCAAATGAGAAA+AGG | 0.432038 | 3.4:+45072203 | MS.gene027256:CDS |
| GACCATCATCGAGGAATACT+TGG | 0.446298 | 3.4:-45071933 | None:intergenic |
| GCCAAAATATATGGCCTACC+AGG | 0.452024 | 3.4:+45071383 | MS.gene027256:CDS |
| AATATCATTATGTTTAGTGT+TGG | 0.457603 | 3.4:-45071822 | None:intergenic |
| CTTATAGCATGCAGAGCAAA+TGG | 0.457684 | 3.4:-45072068 | None:intergenic |
| CAAACTGAAACTGAGACTTC+TGG | 0.468204 | 3.4:-45071895 | None:intergenic |
| CATATTGCAAGTGAGCTATA+CGG | 0.471832 | 3.4:-45071414 | None:intergenic |
| TGCCGTGAAGTGATAGTGTC+TGG | 0.473473 | 3.4:+45071448 | MS.gene027256:CDS |
| TTCTTGATTTGAGAACAGTT+TGG | 0.474837 | 3.4:-45072385 | None:intergenic |
| ATGGGTGTGCATCAGAACTA+TGG | 0.476458 | 3.4:-45071659 | None:intergenic |
| TATCATTATGTTTAGTGTTG+GGG | 0.481563 | 3.4:-45071820 | None:intergenic |
| TTATACTTGCTGCTCACTCT+AGG | 0.483492 | 3.4:+45072479 | MS.gene027256:CDS |
| CAAGACCAATATATCAATCA+AGG | 0.484393 | 3.4:+45072179 | MS.gene027256:CDS |
| GGTGCGAAATTCGAGTGAAT+CGG | 0.490997 | 3.4:+45072428 | MS.gene027256:CDS |
| AGTGTAGCATTCCACGGTGC+AGG | 0.496224 | 3.4:+45072518 | MS.gene027256:CDS |
| TCCCAGACACTATCACTTCA+CGG | 0.498199 | 3.4:-45071450 | None:intergenic |
| TCAGGAGTCAAATGAGAAAA+GGG | 0.502725 | 3.4:+45072204 | MS.gene027256:CDS |
| GCAACTCGCCATTCTTTGAT+GGG | 0.505596 | 3.4:-45071677 | None:intergenic |
| TAGGATTGTGTAGATGGTAG+AGG | 0.509799 | 3.4:-45071955 | None:intergenic |
| CTCTAGGAATTGCAAAGACT+CGG | 0.517971 | 3.4:+45072495 | MS.gene027256:CDS |
| CATTATGTTTAGTGTTGGGG+GGG | 0.536864 | 3.4:-45071817 | None:intergenic |
| TTTCAAATAATCTACTCTCA+AGG | 0.542071 | 3.4:-45071847 | None:intergenic |
| TGCCAAGTATTCCTCGATGA+TGG | 0.542961 | 3.4:+45071931 | MS.gene027256:CDS |
| ACAATGTATTCCAAAAGAGC+TGG | 0.547262 | 3.4:+45072020 | MS.gene027256:CDS |
| TTTACAAAAGACATCAGAGT+AGG | 0.552058 | 3.4:-45071974 | None:intergenic |
| ATCATTATGTTTAGTGTTGG+GGG | 0.552385 | 3.4:-45071819 | None:intergenic |
| TCTGCATGCTATAAGGATAG+AGG | 0.554961 | 3.4:+45072076 | MS.gene027256:CDS |
| GAAAGTGACAAAGCAGTCGT+TGG | 0.555810 | 3.4:+45072736 | MS.gene027256:CDS |
| GCAGAGCAAATGGTGCACTC+TGG | 0.556191 | 3.4:-45072058 | None:intergenic |
| GATGCACACCCATCAAAGAA+TGG | 0.560620 | 3.4:+45071669 | MS.gene027256:CDS |
| AGGAAATTCAGGAGTGCGAA+AGG | 0.562968 | 3.4:+45071497 | MS.gene027256:CDS |
| TCATTATGTTTAGTGTTGGG+GGG | 0.567543 | 3.4:-45071818 | None:intergenic |
| AAGATTCAGCATTAGCTGCA+CGG | 0.583221 | 3.4:-45072354 | None:intergenic |
| TGATAGTGTCTGGGAAGCGA+TGG | 0.590031 | 3.4:+45071458 | MS.gene027256:CDS |
| CCAAAATATATGGCCTACCA+GGG | 0.605422 | 3.4:+45071384 | MS.gene027256:CDS |
| TGCGAAATTCGAGTGAATCG+GGG | 0.624993 | 3.4:+45072430 | MS.gene027256:CDS |
| GCCGTGAAGTGATAGTGTCT+GGG | 0.641094 | 3.4:+45071449 | MS.gene027256:CDS |
| ACTCGGAGTGTAGCATTCCA+CGG | 0.643411 | 3.4:+45072512 | MS.gene027256:CDS |
| AGCTGTTCTCTCATGCCAGT+AGG | 0.676221 | 3.4:+45072407 | MS.gene027256:CDS |
| TCGAGGAATACTTGGCACGA+CGG | 0.681417 | 3.4:-45071925 | None:intergenic |
| ATGGTAGAGGACCATCATCG+AGG | 0.748774 | 3.4:-45071942 | None:intergenic |
| ATAACAGCACACCTGCACCG+TGG | 0.748808 | 3.4:-45072529 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGTATATGTATTCATTTTAA+AGG | - | chr3.4:45071565-45071584 | None:intergenic | 15.0% |
| !!! | GTATATGTATTCATTTTAAA+GGG | - | chr3.4:45071564-45071583 | None:intergenic | 15.0% |
| !! | AATATCATTATGTTTAGTGT+TGG | - | chr3.4:45071825-45071844 | None:intergenic | 20.0% |
| !! | AGAGTAGATTATTTGAAAAT+AGG | + | chr3.4:45071852-45071871 | MS.gene027256:CDS | 20.0% |
| !! | ATATCATTATGTTTAGTGTT+GGG | - | chr3.4:45071824-45071843 | None:intergenic | 20.0% |
| !! | ATTATGTAAACAACTTAAAC+TGG | - | chr3.4:45071315-45071334 | None:intergenic | 20.0% |
| !! | GAGTAGATTATTTGAAAATA+GGG | + | chr3.4:45071853-45071872 | MS.gene027256:CDS | 20.0% |
| !! | TTTAACCATAAAAAATGACT+TGG | - | chr3.4:45072628-45072647 | None:intergenic | 20.0% |
| !!! | ATATTTATGTTGATTTTGCA+GGG | + | chr3.4:45072673-45072692 | MS.gene027256:intron | 20.0% |
| !!! | TATATTTATGTTGATTTTGC+AGG | + | chr3.4:45072672-45072691 | MS.gene027256:intron | 20.0% |
| ! | AATATATCAATCAAGGAATC+AGG | + | chr3.4:45072186-45072205 | MS.gene027256:CDS | 25.0% |
| ! | AGAATCATATGAAAAACATC+AGG | - | chr3.4:45071730-45071749 | None:intergenic | 25.0% |
| ! | ATATGAAAAACATCAGGTTT+AGG | - | chr3.4:45071724-45071743 | None:intergenic | 25.0% |
| ! | GTATTGAAAACAACAAATCT+AGG | - | chr3.4:45072243-45072262 | None:intergenic | 25.0% |
| ! | TATCATTATGTTTAGTGTTG+GGG | - | chr3.4:45071823-45071842 | None:intergenic | 25.0% |
| ! | TATTCAGTGCACAATAATTA+AGG | + | chr3.4:45071598-45071617 | MS.gene027256:intron | 25.0% |
| ! | TGATTCCTTGATTGATATAT+TGG | - | chr3.4:45072187-45072206 | None:intergenic | 25.0% |
| ! | TTTCAAATAATCTACTCTCA+AGG | - | chr3.4:45071850-45071869 | None:intergenic | 25.0% |
| !!! | TACTTTCTGACTTGTTTTTT+GGG | + | chr3.4:45072598-45072617 | MS.gene027256:intron | 25.0% |
| !!! | TATGTATTCATTTTAAAGGG+AGG | - | chr3.4:45071561-45071580 | None:intergenic | 25.0% |
| !!! | TTACTTTCTGACTTGTTTTT+TGG | + | chr3.4:45072597-45072616 | MS.gene027256:intron | 25.0% |
| CAAGACCAATATATCAATCA+AGG | + | chr3.4:45072179-45072198 | MS.gene027256:CDS | 30.0% | |
| TTTACAAAAGACATCAGAGT+AGG | - | chr3.4:45071977-45071996 | None:intergenic | 30.0% | |
| ! | ATCATTATGTTTAGTGTTGG+GGG | - | chr3.4:45071822-45071841 | None:intergenic | 30.0% |
| ! | GCACAATAATTAAGGCTTTT+TGG | + | chr3.4:45071606-45071625 | MS.gene027256:intron | 30.0% |
| ! | TTCTTGATTTGAGAACAGTT+TGG | - | chr3.4:45072388-45072407 | None:intergenic | 30.0% |
| ! | TTGAATTGTCTTCCATTTTC+AGG | + | chr3.4:45071778-45071797 | MS.gene027256:intron | 30.0% |
| !! | ATTAGGTTGGCCAAAATATA+TGG | + | chr3.4:45071374-45071393 | MS.gene027256:intron | 30.0% |
| !!! | GACAACCAAGTCATTTTTTA+TGG | + | chr3.4:45072620-45072639 | MS.gene027256:intron | 30.0% |
| ACAATGTATTCCAAAAGAGC+TGG | + | chr3.4:45072020-45072039 | MS.gene027256:CDS | 35.0% | |
| ATCAGGAGTCAAATGAGAAA+AGG | + | chr3.4:45072203-45072222 | MS.gene027256:CDS | 35.0% | |
| CAAAATCTCTCAAACTCTCT+AGG | - | chr3.4:45072570-45072589 | None:intergenic | 35.0% | |
| CATATTGCAAGTGAGCTATA+CGG | - | chr3.4:45071417-45071436 | None:intergenic | 35.0% | |
| TATTCCCCCCAATTTCTATT+AGG | + | chr3.4:45071357-45071376 | MS.gene027256:intron | 35.0% | |
| TCAGGAGTCAAATGAGAAAA+GGG | + | chr3.4:45072204-45072223 | MS.gene027256:CDS | 35.0% | |
| TGGCCAACCTAATAGAAATT+GGG | - | chr3.4:45071367-45071386 | None:intergenic | 35.0% | |
| TTGGCCAACCTAATAGAAAT+TGG | - | chr3.4:45071368-45071387 | None:intergenic | 35.0% | |
| TTTGAGTCAACTTGTGTTCA+TGG | - | chr3.4:45072111-45072130 | None:intergenic | 35.0% | |
| ! | ACCATATCTTTTTACACTGC+TGG | - | chr3.4:45072459-45072478 | None:intergenic | 35.0% |
| ! | CTAGAGAGTTTGAGAGATTT+TGG | + | chr3.4:45072568-45072587 | MS.gene027256:intron | 35.0% |
| ! | TCATTATGTTTAGTGTTGGG+GGG | - | chr3.4:45071821-45071840 | None:intergenic | 35.0% |
| AAGATTCAGCATTAGCTGCA+CGG | - | chr3.4:45072357-45072376 | None:intergenic | 40.0% | |
| ATTGGGGGGAATAAAAGAGA+AGG | - | chr3.4:45071350-45071369 | None:intergenic | 40.0% | |
| CAAACTGAAACTGAGACTTC+TGG | - | chr3.4:45071898-45071917 | None:intergenic | 40.0% | |
| CACTGAATGCAAGGAAATTC+AGG | + | chr3.4:45071486-45071505 | MS.gene027256:CDS | 40.0% | |
| CATTTGCTCTGCATGCTATA+AGG | + | chr3.4:45072069-45072088 | MS.gene027256:CDS | 40.0% | |
| CCAAAATATATGGCCTACCA+GGG | + | chr3.4:45071384-45071403 | MS.gene027256:CDS | 40.0% | |
| CCAACCTAATAGAAATTGGG+GGG | - | chr3.4:45071364-45071383 | None:intergenic | 40.0% | |
| CTTATAGCATGCAGAGCAAA+TGG | - | chr3.4:45072071-45072090 | None:intergenic | 40.0% | |
| GCCAACCTAATAGAAATTGG+GGG | - | chr3.4:45071365-45071384 | None:intergenic | 40.0% | |
| GCCAGCAGTGTAAAAAGATA+TGG | + | chr3.4:45072455-45072474 | MS.gene027256:CDS | 40.0% | |
| GGCCAACCTAATAGAAATTG+GGG | - | chr3.4:45071366-45071385 | None:intergenic | 40.0% | |
| TAGGATTGTGTAGATGGTAG+AGG | - | chr3.4:45071958-45071977 | None:intergenic | 40.0% | |
| TCAGAGTAGGATTGTGTAGA+TGG | - | chr3.4:45071964-45071983 | None:intergenic | 40.0% | |
| TCTGCATGCTATAAGGATAG+AGG | + | chr3.4:45072076-45072095 | MS.gene027256:CDS | 40.0% | |
| TTCACCATCTGTGTGTAAGT+CGG | - | chr3.4:45072301-45072320 | None:intergenic | 40.0% | |
| ! | CATTATGTTTAGTGTTGGGG+GGG | - | chr3.4:45071820-45071839 | None:intergenic | 40.0% |
| ! | CTCTAGGAATTGCAAAGACT+CGG | + | chr3.4:45072495-45072514 | MS.gene027256:CDS | 40.0% |
| ! | TCTCACATTTCCAGCTCTTT+TGG | - | chr3.4:45072033-45072052 | None:intergenic | 40.0% |
| ! | TTATACTTGCTGCTCACTCT+AGG | + | chr3.4:45072479-45072498 | MS.gene027256:CDS | 40.0% |
| !! | ATGGTTTTGCACTGAATGCA+AGG | + | chr3.4:45071477-45071496 | MS.gene027256:CDS | 40.0% |
| ATGGGTGTGCATCAGAACTA+TGG | - | chr3.4:45071662-45071681 | None:intergenic | 45.0% | |
| CATCAACAACGGCCTGAAAA+TGG | - | chr3.4:45071793-45071812 | None:intergenic | 45.0% | |
| CCCCCCAATTTCTATTAGGT+TGG | + | chr3.4:45071361-45071380 | MS.gene027256:intron | 45.0% | |
| CGAGTTGCATACACTTTGTC+AGG | + | chr3.4:45071692-45071711 | MS.gene027256:CDS | 45.0% | |
| GAAAGTGACAAAGCAGTCGT+TGG | + | chr3.4:45072736-45072755 | MS.gene027256:CDS | 45.0% | |
| GACCATCATCGAGGAATACT+TGG | - | chr3.4:45071936-45071955 | None:intergenic | 45.0% | |
| GATGCACACCCATCAAAGAA+TGG | + | chr3.4:45071669-45071688 | MS.gene027256:CDS | 45.0% | |
| GCAACTCGCCATTCTTTGAT+GGG | - | chr3.4:45071680-45071699 | None:intergenic | 45.0% | |
| GCCAAAATATATGGCCTACC+AGG | + | chr3.4:45071383-45071402 | MS.gene027256:CDS | 45.0% | |
| GGTGCGAAATTCGAGTGAAT+CGG | + | chr3.4:45072428-45072447 | MS.gene027256:CDS | 45.0% | |
| GTGCGAAATTCGAGTGAATC+GGG | + | chr3.4:45072429-45072448 | MS.gene027256:CDS | 45.0% | |
| TCCCAGACACTATCACTTCA+CGG | - | chr3.4:45071453-45071472 | None:intergenic | 45.0% | |
| TGCAACTCGCCATTCTTTGA+TGG | - | chr3.4:45071681-45071700 | None:intergenic | 45.0% | |
| TGCCAAGTATTCCTCGATGA+TGG | + | chr3.4:45071931-45071950 | MS.gene027256:CDS | 45.0% | |
| TGCGAAATTCGAGTGAATCG+GGG | + | chr3.4:45072430-45072449 | MS.gene027256:CDS | 45.0% | |
| ! | AGCTATACGGAAGTTTTCCC+TGG | - | chr3.4:45071404-45071423 | None:intergenic | 45.0% |
| ! | AGGAAATTCAGGAGTGCGAA+AGG | + | chr3.4:45071497-45071516 | MS.gene027256:CDS | 45.0% |
| ! | ATACGGAAGTTTTCCCTGGT+AGG | - | chr3.4:45071400-45071419 | None:intergenic | 45.0% |
| ! | CCCTGGTAGGCCATATATTT+TGG | - | chr3.4:45071387-45071406 | None:intergenic | 45.0% |
| ACTCGGAGTGTAGCATTCCA+CGG | + | chr3.4:45072512-45072531 | MS.gene027256:CDS | 50.0% | |
| AGCTGTTCTCTCATGCCAGT+AGG | + | chr3.4:45072407-45072426 | MS.gene027256:CDS | 50.0% | |
| ATGGTAGAGGACCATCATCG+AGG | - | chr3.4:45071945-45071964 | None:intergenic | 50.0% | |
| CACTCGAATTTCGCACCTAC+TGG | - | chr3.4:45072425-45072444 | None:intergenic | 50.0% | |
| GGGGGGGATATCATCAACAA+CGG | - | chr3.4:45071804-45071823 | None:intergenic | 50.0% | |
| TCGAGGAATACTTGGCACGA+CGG | - | chr3.4:45071928-45071947 | None:intergenic | 50.0% | |
| ! | GCCGTGAAGTGATAGTGTCT+GGG | + | chr3.4:45071449-45071468 | MS.gene027256:CDS | 50.0% |
| ! | TGATAGTGTCTGGGAAGCGA+TGG | + | chr3.4:45071458-45071477 | MS.gene027256:CDS | 50.0% |
| ! | TGCCGTGAAGTGATAGTGTC+TGG | + | chr3.4:45071448-45071467 | MS.gene027256:CDS | 50.0% |
| !! | CTTGCCGACTTACACACAGA+TGG | + | chr3.4:45072294-45072313 | MS.gene027256:intron | 50.0% |
| AGTGTAGCATTCCACGGTGC+AGG | + | chr3.4:45072518-45072537 | MS.gene027256:CDS | 55.0% | |
| ATAACAGCACACCTGCACCG+TGG | - | chr3.4:45072532-45072551 | None:intergenic | 55.0% | |
| GCAGAGCAAATGGTGCACTC+TGG | - | chr3.4:45072061-45072080 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 45071283 | 45072775 | 45071283 | ID=MS.gene027256 |
| chr3.4 | mRNA | 45071283 | 45072775 | 45071283 | ID=MS.gene027256.t1;Parent=MS.gene027256 |
| chr3.4 | exon | 45071283 | 45071297 | 45071283 | ID=MS.gene027256.t1.exon1;Parent=MS.gene027256.t1 |
| chr3.4 | CDS | 45071283 | 45071297 | 45071283 | ID=cds.MS.gene027256.t1;Parent=MS.gene027256.t1 |
| chr3.4 | exon | 45071379 | 45071518 | 45071379 | ID=MS.gene027256.t1.exon2;Parent=MS.gene027256.t1 |
| chr3.4 | CDS | 45071379 | 45071518 | 45071379 | ID=cds.MS.gene027256.t1;Parent=MS.gene027256.t1 |
| chr3.4 | exon | 45071656 | 45071713 | 45071656 | ID=MS.gene027256.t1.exon3;Parent=MS.gene027256.t1 |
| chr3.4 | CDS | 45071656 | 45071713 | 45071656 | ID=cds.MS.gene027256.t1;Parent=MS.gene027256.t1 |
| chr3.4 | exon | 45071800 | 45072225 | 45071800 | ID=MS.gene027256.t1.exon4;Parent=MS.gene027256.t1 |
| chr3.4 | CDS | 45071800 | 45072225 | 45071800 | ID=cds.MS.gene027256.t1;Parent=MS.gene027256.t1 |
| chr3.4 | exon | 45072313 | 45072539 | 45072313 | ID=MS.gene027256.t1.exon5;Parent=MS.gene027256.t1 |
| chr3.4 | CDS | 45072313 | 45072539 | 45072313 | ID=cds.MS.gene027256.t1;Parent=MS.gene027256.t1 |
| chr3.4 | exon | 45072694 | 45072775 | 45072694 | ID=MS.gene027256.t1.exon6;Parent=MS.gene027256.t1 |
| chr3.4 | CDS | 45072694 | 45072775 | 45072694 | ID=cds.MS.gene027256.t1;Parent=MS.gene027256.t1 |
| Gene Sequence |
| Protein sequence |
