Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027574.t1 | XP_003613302.2 | 96 | 199 | 8 | 0 | 1 | 199 | 132 | 330 | 9.90E-105 | 389.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027574.t1 | G7K2T4 | 96.0 | 199 | 8 | 0 | 1 | 199 | 101 | 299 | 7.1e-105 | 389.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene027574.t1 | TR | GNAT |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027574.t1 | MTR_5g035060 | 95.980 | 199 | 8 | 0 | 1 | 199 | 101 | 299 | 1.47e-132 | 374 |
| MS.gene027574.t1 | MTR_5g035040 | 70.352 | 199 | 30 | 3 | 1 | 199 | 207 | 376 | 5.63e-92 | 273 |
| MS.gene027574.t1 | MTR_5g035050 | 89.773 | 88 | 9 | 0 | 112 | 199 | 29 | 116 | 3.25e-54 | 169 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027574.t1 | AT1G24040 | 63.684 | 190 | 65 | 3 | 1 | 187 | 114 | 302 | 3.02e-84 | 252 |
| MS.gene027574.t1 | AT1G24040 | 63.684 | 190 | 65 | 3 | 1 | 187 | 114 | 302 | 3.02e-84 | 252 |
| MS.gene027574.t1 | AT1G24040 | 63.684 | 190 | 65 | 3 | 1 | 187 | 114 | 302 | 3.02e-84 | 252 |
Find 34 sgRNAs with CRISPR-Local
Find 189 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACACATTAATATACCCTTTC+GGG | 0.235023 | 5.1:+25828847 | None:intergenic |
| TATAGAGGAAATGGTGTTAA+TGG | 0.254472 | 5.1:-25828750 | MS.gene027574:CDS |
| TAAGCCTTATATTTGTAATA+TGG | 0.284831 | 5.1:-25828625 | MS.gene027574:CDS |
| GGCTTATCTTTCGGTGGATC+CGG | 0.329893 | 5.1:+25828642 | None:intergenic |
| AACACATTAATATACCCTTT+CGG | 0.344759 | 5.1:+25828846 | None:intergenic |
| CAAATATAAGGCTTATCTTT+CGG | 0.347970 | 5.1:+25828633 | None:intergenic |
| ACAGCCATATTACAAATATA+AGG | 0.375127 | 5.1:+25828621 | None:intergenic |
| TCTCCCTTCAGGAGGGGCAT+TGG | 0.444220 | 5.1:-25825873 | MS.gene027574:intron |
| GAAGAGGAAATGCAGTTGGC+TGG | 0.454362 | 5.1:-25828717 | MS.gene027574:CDS |
| CAAGCGAGGAACTGATTTCT+CGG | 0.465423 | 5.1:-25825833 | MS.gene027574:CDS |
| TGCGTCTCTGCAACAACAGC+AGG | 0.469429 | 5.1:+25825700 | None:intergenic |
| ATTTCTCGGATGAGTTCATC+AGG | 0.474442 | 5.1:-25825819 | MS.gene027574:CDS |
| CATGGCACGTTTGTTTCTGA+AGG | 0.497482 | 5.1:+25825639 | None:intergenic |
| CTGTGGATAAATCTCTTAGA+AGG | 0.499813 | 5.1:-25828602 | MS.gene027574:intron |
| TAATTCTACTCTTCCTTCGC+CGG | 0.500339 | 5.1:-25828661 | MS.gene027574:CDS |
| CCTTCAGGAGGGGCATTGGA+TGG | 0.505384 | 5.1:-25825869 | MS.gene027574:intron |
| CATTGGATGGCATCTTCTAA+AGG | 0.517341 | 5.1:-25825856 | MS.gene027574:CDS |
| TCTTTCGGTGGATCCGGCGA+AGG | 0.517466 | 5.1:+25828648 | None:intergenic |
| CGCTATTGTATGCTTGCTTG+CGG | 0.520895 | 5.1:-25828895 | MS.gene027574:CDS |
| TGAAACAGTATTTGATTGAA+CGG | 0.524045 | 5.1:-25828812 | MS.gene027574:CDS |
| TTATATTTGTAATATGGCTG+TGG | 0.528854 | 5.1:-25828619 | MS.gene027574:CDS |
| GAGGAGTTTGATGCCGCATA+CGG | 0.537087 | 5.1:-25828790 | MS.gene027574:CDS |
| AAGAGGAAATGCAGTTGGCT+GGG | 0.542657 | 5.1:-25828716 | MS.gene027574:CDS |
| AATCGATGATGTTCCCGAAA+GGG | 0.553380 | 5.1:-25828860 | MS.gene027574:CDS |
| GGAAATGGTGTTAATGGTGA+TGG | 0.561718 | 5.1:-25828744 | MS.gene027574:CDS |
| ATATAAGGCTTATCTTTCGG+TGG | 0.596813 | 5.1:+25828636 | None:intergenic |
| TACTCATAGTCATTAGAACA+TGG | 0.612730 | 5.1:+25825621 | None:intergenic |
| GCAATCAACGTTGCCGTATG+CGG | 0.620770 | 5.1:+25828777 | None:intergenic |
| TCTGAAGGCATACTTAAGAG+AGG | 0.626310 | 5.1:+25825654 | None:intergenic |
| GAATCGATGATGTTCCCGAA+AGG | 0.633948 | 5.1:-25828861 | MS.gene027574:CDS |
| TAATGGTGATGGTGAAGAAG+AGG | 0.637013 | 5.1:-25828733 | MS.gene027574:CDS |
| TGAAGAAGAGGAAATGCAGT+TGG | 0.653928 | 5.1:-25828721 | MS.gene027574:CDS |
| GCATCTTCTAAAGGCAAGCG+AGG | 0.659909 | 5.1:-25825847 | MS.gene027574:CDS |
| AACAGTATTTGATTGAACGG+AGG | 0.685549 | 5.1:-25828809 | MS.gene027574:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGAAAATAATAAATAGTTTA+CGG | - | chr5.1:25827827-25827846 | MS.gene027574:intron | 10.0% |
| !!! | AAATGTAATTAATTTTGTAT+AGG | - | chr5.1:25827731-25827750 | MS.gene027574:intron | 10.0% |
| !! | AAAGAGTAATAAATAGTTAA+TGG | + | chr5.1:25828009-25828028 | None:intergenic | 15.0% |
| !! | AAATAACATTAATGTTTCAT+TGG | + | chr5.1:25827975-25827994 | None:intergenic | 15.0% |
| !! | AAATGTAATCAATTATGTAT+TGG | + | chr5.1:25828107-25828126 | None:intergenic | 15.0% |
| !! | TAAAAATTAGTTAATGTGTT+TGG | + | chr5.1:25826583-25826602 | None:intergenic | 15.0% |
| !! | TAAATAGTTAATGGTATAAA+AGG | + | chr5.1:25828000-25828019 | None:intergenic | 15.0% |
| !! | TATCAAATTTGCAAAAAATT+TGG | - | chr5.1:25826752-25826771 | MS.gene027574:intron | 15.0% |
| !! | TTTCCATTATTTAAAGATTA+AGG | - | chr5.1:25827008-25827027 | MS.gene027574:intron | 15.0% |
| !!! | AAAAATTTGGACTATTTTAA+CGG | - | chr5.1:25826765-25826784 | MS.gene027574:intron | 15.0% |
| !! | AAATCAACTATACATTCTAT+TGG | + | chr5.1:25826042-25826061 | None:intergenic | 20.0% |
| !! | ACAAAATTATCCTTCATTAA+CGG | - | chr5.1:25827774-25827793 | MS.gene027574:intron | 20.0% |
| !! | ACCAAAATGACTAATAATTT+GGG | + | chr5.1:25827693-25827712 | None:intergenic | 20.0% |
| !! | ACCAATATAATACATATTCT+GGG | - | chr5.1:25826940-25826959 | MS.gene027574:intron | 20.0% |
| !! | AGCTATATTTAATATCAAAG+AGG | + | chr5.1:25827237-25827256 | None:intergenic | 20.0% |
| !! | ATATAGCTTATACATAAACA+TGG | - | chr5.1:25827249-25827268 | MS.gene027574:intron | 20.0% |
| !! | ATGCTAAAAGTTACTATTAT+AGG | + | chr5.1:25828481-25828500 | None:intergenic | 20.0% |
| !! | ATGCTATAATAGTTATAACA+AGG | + | chr5.1:25828344-25828363 | None:intergenic | 20.0% |
| !! | ATTTCTTAATCTGTGTAAAA+TGG | - | chr5.1:25828123-25828142 | MS.gene027574:intron | 20.0% |
| !! | CAACCTTAATCTTTAAATAA+TGG | + | chr5.1:25827014-25827033 | None:intergenic | 20.0% |
| !! | GAAATGCATAAATTTAACAA+TGG | + | chr5.1:25826527-25826546 | None:intergenic | 20.0% |
| !! | TGAAATAGTAAATGAATATG+TGG | + | chr5.1:25826661-25826680 | None:intergenic | 20.0% |
| !! | TGTAAAACGACATATAATTT+GGG | + | chr5.1:25827949-25827968 | None:intergenic | 20.0% |
| !! | TTGTAAAACGACATATAATT+TGG | + | chr5.1:25827950-25827969 | None:intergenic | 20.0% |
| !!! | AACATAAATTTCTAGTAATG+TGG | + | chr5.1:25826264-25826283 | None:intergenic | 20.0% |
| !!! | AGTTGACATATTGATTTTTT+TGG | + | chr5.1:25828272-25828291 | None:intergenic | 20.0% |
| !!! | GAGATTTCTTTTAATGTTTA+TGG | - | chr5.1:25825848-25825867 | MS.gene027574:CDS | 20.0% |
| !!! | GTTGACATATTGATTTTTTT+GGG | + | chr5.1:25828271-25828290 | None:intergenic | 20.0% |
| !!! | GTTGACATATTGATTTTTTT+TGG | + | chr5.1:25828271-25828290 | None:intergenic | 20.0% |
| !!! | TAAGCCTTATATTTGTAATA+TGG | - | chr5.1:25825910-25825929 | MS.gene027574:intron | 20.0% |
| ! | AAAACATTACACATGCTTTA+AGG | - | chr5.1:25825959-25825978 | MS.gene027574:intron | 25.0% |
| ! | AACACATTAATATACCCTTT+CGG | + | chr5.1:25825692-25825711 | None:intergenic | 25.0% |
| ! | ACAAAATTATCCTTCGTTAA+TGG | + | chr5.1:25828060-25828079 | None:intergenic | 25.0% |
| ! | ACAGCCATATTACAAATATA+AGG | + | chr5.1:25825917-25825936 | None:intergenic | 25.0% |
| ! | AGCTTAATTATTTATACTGC+AGG | + | chr5.1:25827593-25827612 | None:intergenic | 25.0% |
| ! | CAAATATAAGGCTTATCTTT+CGG | + | chr5.1:25825905-25825924 | None:intergenic | 25.0% |
| ! | GACCAAAATGACTAATAATT+TGG | + | chr5.1:25827694-25827713 | None:intergenic | 25.0% |
| ! | GACCAATATAATACATATTC+TGG | - | chr5.1:25826939-25826958 | MS.gene027574:intron | 25.0% |
| ! | GAGCTTATGTAAATAGTTTA+TGG | - | chr5.1:25827115-25827134 | MS.gene027574:intron | 25.0% |
| ! | GTCAAAACGACTTATAATTT+GGG | - | chr5.1:25828145-25828164 | MS.gene027574:intron | 25.0% |
| ! | TAAATAGTTTACGGTATAGT+AGG | - | chr5.1:25827836-25827855 | MS.gene027574:intron | 25.0% |
| ! | TAATGAGTTAGATCGAAATA+GGG | - | chr5.1:25826430-25826449 | MS.gene027574:intron | 25.0% |
| ! | TCCCAGAATATGTATTATAT+TGG | + | chr5.1:25826944-25826963 | None:intergenic | 25.0% |
| ! | TGAAACAGTATTTGATTGAA+CGG | - | chr5.1:25825723-25825742 | MS.gene027574:CDS | 25.0% |
| ! | TTAATGAGTTAGATCGAAAT+AGG | - | chr5.1:25826429-25826448 | MS.gene027574:intron | 25.0% |
| ! | TTATATTTGTAATATGGCTG+TGG | - | chr5.1:25825916-25825935 | MS.gene027574:intron | 25.0% |
| ! | TTATCAGAGAAATAAGTTCA+GGG | + | chr5.1:25826885-25826904 | None:intergenic | 25.0% |
| ! | TTTATCAGAGAAATAAGTTC+AGG | + | chr5.1:25826886-25826905 | None:intergenic | 25.0% |
| !! | AGCTTAAAACAAGTTGAAAT+TGG | + | chr5.1:25827153-25827172 | None:intergenic | 25.0% |
| !! | GAGAGTACATTATTACAATT+TGG | + | chr5.1:25827639-25827658 | None:intergenic | 25.0% |
| !! | GCTTTTGTATACATGTTAAA+TGG | + | chr5.1:25828779-25828798 | None:intergenic | 25.0% |
| !! | TACAATTTGGAATTCATTGA+TGG | + | chr5.1:25827626-25827645 | None:intergenic | 25.0% |
| !! | TCCCAAATTATTAGTCATTT+TGG | - | chr5.1:25827689-25827708 | MS.gene027574:intron | 25.0% |
| !! | TTGCATTTGTTGGATTAATT+TGG | - | chr5.1:25825988-25826007 | MS.gene027574:intron | 25.0% |
| !!! | AGGTTAAGTAGGATATTTTT+TGG | - | chr5.1:25827407-25827426 | MS.gene027574:intron | 25.0% |
| !!! | AGTTGATTTGAAGAATCAAT+AGG | - | chr5.1:25826053-25826072 | MS.gene027574:intron | 25.0% |
| !!! | GAAAGTATTTAACACTAACA+AGG | + | chr5.1:25827450-25827469 | None:intergenic | 25.0% |
| !!! | GGTTAAGTAGGATATTTTTT+GGG | - | chr5.1:25827408-25827427 | MS.gene027574:intron | 25.0% |
| !!! | GTTGATTTGAAGAATCAATA+GGG | - | chr5.1:25826054-25826073 | MS.gene027574:intron | 25.0% |
| !!! | TAATTTTTTACTCTTCTGCT+AGG | - | chr5.1:25827387-25827406 | MS.gene027574:intron | 25.0% |
| !!! | TTTTTTTTTACCTTTTCCTG+TGG | - | chr5.1:25828419-25828438 | MS.gene027574:intron | 25.0% |
| AAACGACTTATAATTTGGGA+CGG | - | chr5.1:25828149-25828168 | MS.gene027574:intron | 30.0% | |
| AAGCTAGAACTATTAGAAGT+GGG | - | chr5.1:25827333-25827352 | MS.gene027574:intron | 30.0% | |
| AAGGAAAGTAAGTCAAATAG+AGG | - | chr5.1:25826352-25826371 | MS.gene027574:intron | 30.0% | |
| AAGTAAGTCAAATAGAGGAT+AGG | - | chr5.1:25826357-25826376 | MS.gene027574:intron | 30.0% | |
| ACACATTAATATACCCTTTC+GGG | + | chr5.1:25825691-25825710 | None:intergenic | 30.0% | |
| AGATACTTGAGCTTATCTAT+TGG | - | chr5.1:25827062-25827081 | MS.gene027574:intron | 30.0% | |
| ATAGTTTATGGCATGTCTAT+AGG | - | chr5.1:25827127-25827146 | MS.gene027574:intron | 30.0% | |
| ATGCATTTCATGTCAACATT+AGG | - | chr5.1:25826538-25826557 | MS.gene027574:intron | 30.0% | |
| ATTGGGAGGACTAATTAAAA+TGG | - | chr5.1:25826097-25826116 | MS.gene027574:intron | 30.0% | |
| CATTCAAACTAGAGTGAATA+GGG | + | chr5.1:25826817-25826836 | None:intergenic | 30.0% | |
| CATTTAACATGCAATGTCAT+AGG | + | chr5.1:25826217-25826236 | None:intergenic | 30.0% | |
| CTCAAAGCGACTTATAATTT+GGG | - | chr5.1:25828201-25828220 | MS.gene027574:intron | 30.0% | |
| GGTCAAAACGACTTATAATT+TGG | - | chr5.1:25828144-25828163 | MS.gene027574:intron | 30.0% | |
| GTTAGAATCCAATTACATTC+AGG | + | chr5.1:25828630-25828649 | None:intergenic | 30.0% | |
| TAACTGTAGAAGTTATGAGA+GGG | - | chr5.1:25826690-25826709 | MS.gene027574:intron | 30.0% | |
| TAAGCTAGAACTATTAGAAG+TGG | - | chr5.1:25827332-25827351 | MS.gene027574:intron | 30.0% | |
| TACTCATAGTCATTAGAACA+TGG | + | chr5.1:25828917-25828936 | None:intergenic | 30.0% | |
| TCATTCAAACTAGAGTGAAT+AGG | + | chr5.1:25826818-25826837 | None:intergenic | 30.0% | |
| TCTCAAAGCGACTTATAATT+TGG | - | chr5.1:25828200-25828219 | MS.gene027574:intron | 30.0% | |
| TGAAGAATCAATAGGGAAAT+TGG | - | chr5.1:25826061-25826080 | MS.gene027574:intron | 30.0% | |
| TGCATTTCATGTCAACATTA+GGG | - | chr5.1:25826539-25826558 | MS.gene027574:intron | 30.0% | |
| TTAATATCAAAGAGGAAACG+TGG | + | chr5.1:25827229-25827248 | None:intergenic | 30.0% | |
| ! | ATTGCGTTTTATAGAGGAAA+TGG | - | chr5.1:25825776-25825795 | MS.gene027574:CDS | 30.0% |
| ! | CTTTTCAATACCATTAACGA+AGG | - | chr5.1:25828047-25828066 | MS.gene027574:intron | 30.0% |
| ! | GACATGTGAATTTTGTAGTA+AGG | - | chr5.1:25826333-25826352 | MS.gene027574:intron | 30.0% |
| ! | GTTTTACACCTGAATGTAAT+TGG | - | chr5.1:25828619-25828638 | MS.gene027574:CDS | 30.0% |
| ! | TAAAAGTTCAAGTTCAAGCA+AGG | + | chr5.1:25827483-25827502 | None:intergenic | 30.0% |
| ! | TATAGAGGAAATGGTGTTAA+TGG | - | chr5.1:25825785-25825804 | MS.gene027574:CDS | 30.0% |
| !! | ATTGGTGTTTGACTTGATAT+TGG | - | chr5.1:25826079-25826098 | MS.gene027574:intron | 30.0% |
| !! | TTGGTGTTTGACTTGATATT+GGG | - | chr5.1:25826080-25826099 | MS.gene027574:intron | 30.0% |
| AACAGTATTTGATTGAACGG+AGG | - | chr5.1:25825726-25825745 | MS.gene027574:CDS | 35.0% | |
| AAGCGACTTATAATTTGGGA+CGG | + | chr5.1:25828224-25828205 | None:intergenic | 35.0% | |
| AAGCGACTTATAATTTGGGA+TGG | - | chr5.1:25828205-25828224 | MS.gene027574:intron | 35.0% | |
| ACTATTAGAAGTGGGTGAAA+AGG | - | chr5.1:25827341-25827360 | MS.gene027574:intron | 35.0% | |
| AGCATCCAAGATTAAGATTG+AGG | - | chr5.1:25828496-25828515 | MS.gene027574:intron | 35.0% | |
| ATATAAGGCTTATCTTTCGG+TGG | + | chr5.1:25825902-25825921 | None:intergenic | 35.0% | |
| ATGCAAGCCATTAGAATTTC+AGG | + | chr5.1:25828543-25828562 | None:intergenic | 35.0% | |
| ATTAGGGCTATTATCACTTC+AGG | - | chr5.1:25826555-25826574 | MS.gene027574:intron | 35.0% | |
| CATGTTCAATTTAATCCCCA+TGG | - | chr5.1:25826615-25826634 | MS.gene027574:intron | 35.0% | |
| CTAACTGTAGAAGTTATGAG+AGG | - | chr5.1:25826689-25826708 | MS.gene027574:intron | 35.0% | |
| CTATTAGAAGTGGGTGAAAA+GGG | - | chr5.1:25827342-25827361 | MS.gene027574:intron | 35.0% | |
| CTGTGGATAAATCTCTTAGA+AGG | - | chr5.1:25825933-25825952 | MS.gene027574:intron | 35.0% | |
| CTTTCTCATACCGTTAATGA+AGG | + | chr5.1:25827787-25827806 | None:intergenic | 35.0% | |
| GCACGTTAAATTCATGCATT+TGG | - | chr5.1:25826284-25826303 | MS.gene027574:intron | 35.0% | |
| GGTTACCTCAATCTTAATCT+TGG | + | chr5.1:25828504-25828523 | None:intergenic | 35.0% | |
| TCAGGAGGAGAATATATCTT+TGG | + | chr5.1:25828525-25828544 | None:intergenic | 35.0% | |
| TCCCAAATTATAAGTCGCTT+CGG | - | chr5.1:25827910-25827929 | MS.gene027574:intron | 35.0% | |
| TCGTAACGAGTTAGTCAAAA+TGG | + | chr5.1:25826717-25826736 | None:intergenic | 35.0% | |
| TGAACATGTGATCTTACATG+TGG | - | chr5.1:25826235-25826254 | MS.gene027574:intron | 35.0% | |
| TGTGGCTAAATGCATATTCA+GGG | - | chr5.1:25826972-25826991 | MS.gene027574:intron | 35.0% | |
| TTACACATCTATATACGCTC+CGG | + | chr5.1:25827315-25827334 | None:intergenic | 35.0% | |
| TTCTCCTCCTGAAATTCTAA+TGG | - | chr5.1:25828533-25828552 | MS.gene027574:intron | 35.0% | |
| ! | GACTTATAATTTGGGATGGA+GGG | - | chr5.1:25828209-25828228 | MS.gene027574:intron | 35.0% |
| !! | AAGGCTTGATTTGCATTTGT+TGG | - | chr5.1:25825978-25825997 | MS.gene027574:intron | 35.0% |
| !! | ACGTTGATTGCGTTTTATAG+AGG | - | chr5.1:25825770-25825789 | MS.gene027574:CDS | 35.0% |
| !! | TATTCTGGGACTAATTTGTG+TGG | - | chr5.1:25826954-25826973 | MS.gene027574:intron | 35.0% |
| !!! | CAACTTGTTTTAAGCTCTCA+AGG | - | chr5.1:25827157-25827176 | MS.gene027574:intron | 35.0% |
| !!! | TTGTTTTAAGCTCTCAAGGA+TGG | - | chr5.1:25827161-25827180 | MS.gene027574:intron | 35.0% |
| AATCGATGATGTTCCCGAAA+GGG | - | chr5.1:25825675-25825694 | MS.gene027574:CDS | 40.0% | |
| ACTCAAAGAAAGTAGACCAC+AGG | + | chr5.1:25828438-25828457 | None:intergenic | 40.0% | |
| ACTCTTCTGCTAGGTTAAGT+AGG | - | chr5.1:25827396-25827415 | MS.gene027574:intron | 40.0% | |
| AGAAAGTAGACCACAGGAAA+AGG | + | chr5.1:25828432-25828451 | None:intergenic | 40.0% | |
| ATTGGTCAAATTTGTCCTCG+TGG | + | chr5.1:25826926-25826945 | None:intergenic | 40.0% | |
| ATTTCTCGGATGAGTTCATC+AGG | - | chr5.1:25828716-25828735 | MS.gene027574:CDS | 40.0% | |
| CAAGCCATTAGAATTTCAGG+AGG | + | chr5.1:25828540-25828559 | None:intergenic | 40.0% | |
| CAATTTAATCCCCATGGTGT+AGG | - | chr5.1:25826621-25826640 | MS.gene027574:intron | 40.0% | |
| CATTGGATGGCATCTTCTAA+AGG | - | chr5.1:25828679-25828698 | MS.gene027574:CDS | 40.0% | |
| CCCAAATTATAAGTCGCTTC+GGG | - | chr5.1:25827911-25827930 | MS.gene027574:intron | 40.0% | |
| CCCGAAGCGACTTATAATTT+GGG | + | chr5.1:25827914-25827933 | None:intergenic | 40.0% | |
| CTTTGAGTCAATGCATGCTA+TGG | - | chr5.1:25828450-25828469 | MS.gene027574:intron | 40.0% | |
| GTGGCTAAATGCATATTCAG+GGG | - | chr5.1:25826973-25826992 | MS.gene027574:intron | 40.0% | |
| GTGTGGCTAAATGCATATTC+AGG | - | chr5.1:25826971-25826990 | MS.gene027574:intron | 40.0% | |
| GTTGTTTATTCAAACCCTCC+CGG | - | chr5.1:25827293-25827312 | MS.gene027574:intron | 40.0% | |
| TAATTCTACTCTTCCTTCGC+CGG | - | chr5.1:25825874-25825893 | MS.gene027574:intron | 40.0% | |
| TACACATCTATATACGCTCC+GGG | + | chr5.1:25827314-25827333 | None:intergenic | 40.0% | |
| TCACAAACCAATTCACGTGT+AGG | + | chr5.1:25827039-25827058 | None:intergenic | 40.0% | |
| TCCCGAAGCGACTTATAATT+TGG | + | chr5.1:25827915-25827934 | None:intergenic | 40.0% | |
| TGAAGAAGAGGAAATGCAGT+TGG | - | chr5.1:25825814-25825833 | MS.gene027574:CDS | 40.0% | |
| ! | ACTTTTAGCACAGACAGAGT+AGG | - | chr5.1:25827496-25827515 | MS.gene027574:intron | 40.0% |
| ! | CGACTTATAATTTGGGATGG+AGG | - | chr5.1:25828208-25828227 | MS.gene027574:intron | 40.0% |
| ! | CTTTTAGCACAGACAGAGTA+GGG | - | chr5.1:25827497-25827516 | MS.gene027574:intron | 40.0% |
| ! | GACTTATAATTTGGGACGGA+GGG | - | chr5.1:25828153-25828172 | MS.gene027574:intron | 40.0% |
| ! | GACTTATAATTTGGGACGGA+GGG | + | chr5.1:25828172-25828153 | None:intergenic | 40.0% |
| ! | GGAAATGGTGTTAATGGTGA+TGG | - | chr5.1:25825791-25825810 | MS.gene027574:CDS | 40.0% |
| ! | TCTGAAGGCATACTTAAGAG+AGG | + | chr5.1:25828884-25828903 | None:intergenic | 40.0% |
| !! | GTGTTTGACTTGATATTGGG+AGG | - | chr5.1:25826083-25826102 | MS.gene027574:intron | 40.0% |
| !! | TAATGGTGATGGTGAAGAAG+AGG | - | chr5.1:25825802-25825821 | MS.gene027574:CDS | 40.0% |
| AAGAGGAAATGCAGTTGGCT+GGG | - | chr5.1:25825819-25825838 | MS.gene027574:CDS | 45.0% | |
| CACGTAAATCCTACACCATG+GGG | + | chr5.1:25826633-25826652 | None:intergenic | 45.0% | |
| CCACGTAAATCCTACACCAT+GGG | + | chr5.1:25826634-25826653 | None:intergenic | 45.0% | |
| CGCTATTGTATGCTTGCTTG+CGG | - | chr5.1:25825640-25825659 | MS.gene027574:CDS | 45.0% | |
| GAATCGATGATGTTCCCGAA+AGG | - | chr5.1:25825674-25825693 | MS.gene027574:CDS | 45.0% | |
| GTCAAATAGAGGATAGGCAG+AGG | - | chr5.1:25826363-25826382 | MS.gene027574:intron | 45.0% | |
| TCCACGTAAATCCTACACCA+TGG | + | chr5.1:25826635-25826654 | None:intergenic | 45.0% | |
| ! | AAGCCTTATCCCACTAAGTG+GGG | + | chr5.1:25826499-25826518 | None:intergenic | 45.0% |
| ! | CAAGCCTTATCCCACTAAGT+GGG | + | chr5.1:25826500-25826519 | None:intergenic | 45.0% |
| ! | CAAGCGAGGAACTGATTTCT+CGG | - | chr5.1:25828702-25828721 | MS.gene027574:CDS | 45.0% |
| ! | CGACTTATAATTTGGGACGG+AGG | - | chr5.1:25828152-25828171 | MS.gene027574:intron | 45.0% |
| ! | CGACTTATAATTTGGGACGG+AGG | + | chr5.1:25828171-25828152 | None:intergenic | 45.0% |
| ! | GGACGGAGGGAGTATAATTT+GGG | - | chr5.1:25828166-25828185 | MS.gene027574:intron | 45.0% |
| ! | TCAAGCCTTATCCCACTAAG+TGG | + | chr5.1:25826501-25826520 | None:intergenic | 45.0% |
| !! | CATGGCACGTTTGTTTCTGA+AGG | + | chr5.1:25828899-25828918 | None:intergenic | 45.0% |
| !! | TAGAAGTGTCAAGAACCACG+AGG | - | chr5.1:25826908-25826927 | MS.gene027574:intron | 45.0% |
| !! | TTCTAAGAGTGTCTCCCTTC+AGG | - | chr5.1:25828651-25828670 | MS.gene027574:CDS | 45.0% |
| ACATCTATATACGCTCCGGG+AGG | + | chr5.1:25827311-25827330 | None:intergenic | 50.0% | |
| CATCTATATACGCTCCGGGA+GGG | + | chr5.1:25827310-25827329 | None:intergenic | 50.0% | |
| CCCATGGTGTAGGATTTACG+TGG | - | chr5.1:25826631-25826650 | MS.gene027574:intron | 50.0% | |
| CTTATCCCACTAAGTGGGGT+CGG | + | chr5.1:25826495-25826514 | None:intergenic | 50.0% | |
| GAAGAGGAAATGCAGTTGGC+TGG | - | chr5.1:25825818-25825837 | MS.gene027574:CDS | 50.0% | |
| GAGGAGTTTGATGCCGCATA+CGG | - | chr5.1:25825745-25825764 | MS.gene027574:CDS | 50.0% | |
| GCAATCAACGTTGCCGTATG+CGG | + | chr5.1:25825761-25825780 | None:intergenic | 50.0% | |
| GCTCTCAACACACTCACAAG+TGG | + | chr5.1:25827099-25827118 | None:intergenic | 50.0% | |
| GGCTTATCTTTCGGTGGATC+CGG | + | chr5.1:25825896-25825915 | None:intergenic | 50.0% | |
| ! | GCATCTTCTAAAGGCAAGCG+AGG | - | chr5.1:25828688-25828707 | MS.gene027574:CDS | 50.0% |
| ! | GGGACGGAGGGAGTATAATT+TGG | - | chr5.1:25828165-25828184 | MS.gene027574:intron | 50.0% |
| !! | AAGAGTGTCTCCCTTCAGGA+GGG | - | chr5.1:25828655-25828674 | MS.gene027574:CDS | 50.0% |
| !! | TAAGAGTGTCTCCCTTCAGG+AGG | - | chr5.1:25828654-25828673 | MS.gene027574:CDS | 50.0% |
| ATGTAGCCGACCCCACTTAG+TGG | - | chr5.1:25826486-25826505 | MS.gene027574:intron | 55.0% | |
| CATCCAATGCCCCTCCTGAA+GGG | + | chr5.1:25828668-25828687 | None:intergenic | 55.0% | |
| CGACCCCACTTAGTGGGATA+AGG | - | chr5.1:25826493-25826512 | MS.gene027574:intron | 55.0% | |
| GGTTGCGCCTACACGTGAAT+TGG | - | chr5.1:25827029-25827048 | MS.gene027574:intron | 55.0% | |
| TGCGTCTCTGCAACAACAGC+AGG | + | chr5.1:25828838-25828857 | None:intergenic | 55.0% | |
| TGTAGCCGACCCCACTTAGT+GGG | - | chr5.1:25826487-25826506 | MS.gene027574:intron | 55.0% | |
| ! | AGAGTGTCTCCCTTCAGGAG+GGG | - | chr5.1:25828656-25828675 | MS.gene027574:CDS | 55.0% |
| CCATCCAATGCCCCTCCTGA+AGG | + | chr5.1:25828669-25828688 | None:intergenic | 60.0% | |
| TCTTTCGGTGGATCCGGCGA+AGG | + | chr5.1:25825890-25825909 | None:intergenic | 60.0% | |
| ! | TCTCCCTTCAGGAGGGGCAT+TGG | - | chr5.1:25828662-25828681 | MS.gene027574:CDS | 60.0% |
| !! | CCTTCAGGAGGGGCATTGGA+TGG | - | chr5.1:25828666-25828685 | MS.gene027574:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 25825620 | 25828937 | 25825620 | ID=MS.gene027574 |
| chr5.1 | mRNA | 25825620 | 25828937 | 25825620 | ID=MS.gene027574.t1;Parent=MS.gene027574 |
| chr5.1 | exon | 25828603 | 25828937 | 25828603 | ID=MS.gene027574.t1.exon1;Parent=MS.gene027574.t1 |
| chr5.1 | CDS | 25828603 | 25828937 | 25828603 | ID=cds.MS.gene027574.t1;Parent=MS.gene027574.t1 |
| chr5.1 | exon | 25825620 | 25825884 | 25825620 | ID=MS.gene027574.t1.exon2;Parent=MS.gene027574.t1 |
| chr5.1 | CDS | 25825620 | 25825884 | 25825620 | ID=cds.MS.gene027574.t1;Parent=MS.gene027574.t1 |
| Gene Sequence |
| Protein sequence |
