Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene027670.t1 | GAU33812.1 | 95.5 | 132 | 6 | 0 | 37 | 168 | 4 | 135 | 9.00E-67 | 263.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene027670.t1 | Q84JS6 | 77.3 | 132 | 29 | 1 | 38 | 168 | 196 | 327 | 4.8e-53 | 208.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene027670.t1 | A0A2Z6NAJ4 | 95.5 | 132 | 6 | 0 | 37 | 168 | 4 | 135 | 6.5e-67 | 263.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene027670.t1 | TF | HB-other |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene027670.t1 | MTR_5g033720 | 99.242 | 132 | 1 | 0 | 37 | 168 | 185 | 316 | 8.88e-95 | 277 |
MS.gene027670.t1 | MTR_1g017080 | 62.205 | 127 | 45 | 1 | 37 | 160 | 230 | 356 | 2.06e-43 | 148 |
MS.gene027670.t1 | MTR_2g024390 | 65.289 | 121 | 40 | 1 | 38 | 158 | 231 | 349 | 7.68e-42 | 144 |
MS.gene027670.t1 | MTR_1g084060 | 53.788 | 132 | 54 | 1 | 37 | 161 | 129 | 260 | 2.06e-39 | 134 |
MS.gene027670.t1 | MTR_1g084060 | 53.788 | 132 | 54 | 1 | 37 | 161 | 129 | 260 | 2.40e-39 | 135 |
MS.gene027670.t1 | MTR_5g085860 | 62.712 | 118 | 42 | 1 | 41 | 158 | 160 | 275 | 9.94e-37 | 128 |
MS.gene027670.t1 | MTR_5g011070 | 53.012 | 83 | 39 | 0 | 64 | 146 | 194 | 276 | 7.67e-23 | 92.4 |
MS.gene027670.t1 | MTR_2g461240 | 51.807 | 83 | 40 | 0 | 64 | 146 | 257 | 339 | 2.04e-22 | 92.0 |
MS.gene027670.t1 | MTR_3g106400 | 51.220 | 82 | 40 | 0 | 65 | 146 | 274 | 355 | 9.78e-22 | 90.5 |
MS.gene027670.t1 | MTR_3g106400 | 51.220 | 82 | 40 | 0 | 65 | 146 | 274 | 355 | 9.91e-22 | 90.5 |
MS.gene027670.t1 | MTR_1g012960 | 50.602 | 83 | 41 | 0 | 64 | 146 | 338 | 420 | 1.15e-21 | 90.9 |
MS.gene027670.t1 | MTR_4g116545 | 51.220 | 82 | 40 | 0 | 65 | 146 | 234 | 315 | 1.30e-21 | 89.7 |
MS.gene027670.t1 | MTR_4g116545 | 51.220 | 82 | 40 | 0 | 65 | 146 | 234 | 315 | 1.64e-21 | 89.4 |
MS.gene027670.t1 | MTR_3g106400 | 50.602 | 83 | 41 | 0 | 64 | 146 | 273 | 355 | 1.93e-21 | 90.1 |
MS.gene027670.t1 | MTR_4g019450 | 54.545 | 55 | 25 | 0 | 94 | 148 | 367 | 421 | 9.01e-14 | 68.6 |
MS.gene027670.t1 | MTR_8g098815 | 38.144 | 97 | 58 | 1 | 54 | 148 | 334 | 430 | 4.50e-13 | 66.2 |
MS.gene027670.t1 | MTR_8g078480 | 33.333 | 141 | 84 | 4 | 15 | 148 | 500 | 637 | 1.11e-12 | 65.5 |
MS.gene027670.t1 | MTR_7g065050 | 50.909 | 55 | 27 | 0 | 94 | 148 | 312 | 366 | 1.24e-12 | 65.1 |
MS.gene027670.t1 | MTR_4g051532 | 49.091 | 55 | 28 | 0 | 94 | 148 | 409 | 463 | 1.34e-12 | 65.1 |
MS.gene027670.t1 | MTR_5g018860 | 49.091 | 55 | 28 | 0 | 94 | 148 | 531 | 585 | 9.10e-12 | 62.8 |
MS.gene027670.t1 | MTR_7g106320 | 49.091 | 55 | 28 | 0 | 94 | 148 | 365 | 419 | 1.77e-11 | 61.6 |
MS.gene027670.t1 | MTR_3g112300 | 40.278 | 72 | 40 | 2 | 77 | 148 | 338 | 406 | 2.08e-11 | 61.6 |
MS.gene027670.t1 | MTR_1g023050 | 47.273 | 55 | 29 | 0 | 94 | 148 | 363 | 417 | 2.17e-11 | 61.6 |
MS.gene027670.t1 | MTR_3g112300 | 40.278 | 72 | 40 | 2 | 77 | 148 | 338 | 406 | 2.47e-11 | 61.2 |
MS.gene027670.t1 | MTR_1g057790 | 49.091 | 55 | 28 | 0 | 94 | 148 | 353 | 407 | 2.52e-11 | 61.2 |
MS.gene027670.t1 | MTR_3g112290 | 45.455 | 55 | 30 | 0 | 94 | 148 | 355 | 409 | 4.01e-11 | 60.8 |
MS.gene027670.t1 | MTR_2g095050 | 49.091 | 55 | 28 | 0 | 94 | 148 | 446 | 500 | 4.39e-11 | 60.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene027670.t1 | AT1G23380 | 77.273 | 132 | 29 | 1 | 38 | 168 | 198 | 329 | 4.09e-65 | 202 |
MS.gene027670.t1 | AT1G23380 | 77.273 | 132 | 29 | 1 | 38 | 168 | 196 | 327 | 4.65e-65 | 202 |
MS.gene027670.t1 | AT1G70510 | 71.970 | 132 | 36 | 1 | 37 | 167 | 179 | 310 | 1.00e-58 | 185 |
MS.gene027670.t1 | AT1G70510 | 71.970 | 132 | 36 | 1 | 37 | 167 | 183 | 314 | 1.11e-58 | 185 |
MS.gene027670.t1 | AT4G08150 | 62.205 | 127 | 45 | 1 | 37 | 160 | 248 | 374 | 8.99e-43 | 146 |
MS.gene027670.t1 | AT1G62360 | 61.417 | 127 | 44 | 1 | 32 | 158 | 234 | 355 | 6.03e-41 | 141 |
MS.gene027670.t1 | AT4G32040 | 51.807 | 83 | 40 | 0 | 64 | 146 | 280 | 362 | 3.27e-23 | 94.4 |
MS.gene027670.t1 | AT1G62990 | 53.012 | 83 | 39 | 0 | 64 | 146 | 193 | 275 | 3.49e-23 | 93.2 |
MS.gene027670.t1 | AT4G32040 | 51.807 | 83 | 40 | 0 | 64 | 146 | 280 | 362 | 3.68e-23 | 94.4 |
MS.gene027670.t1 | AT5G25220 | 50.602 | 83 | 41 | 0 | 64 | 146 | 321 | 403 | 8.73e-22 | 90.9 |
MS.gene027670.t1 | AT5G25220 | 50.602 | 83 | 41 | 0 | 64 | 146 | 321 | 403 | 8.88e-22 | 90.9 |
MS.gene027670.t1 | AT5G11060 | 50.602 | 83 | 41 | 0 | 64 | 146 | 285 | 367 | 8.88e-22 | 90.9 |
MS.gene027670.t1 | AT5G02030 | 52.727 | 55 | 26 | 0 | 94 | 148 | 355 | 409 | 1.98e-13 | 67.4 |
MS.gene027670.t1 | AT2G27220 | 50.909 | 55 | 27 | 0 | 94 | 148 | 235 | 289 | 5.17e-13 | 66.2 |
MS.gene027670.t1 | AT2G27220 | 50.909 | 55 | 27 | 0 | 94 | 148 | 235 | 289 | 5.17e-13 | 66.2 |
MS.gene027670.t1 | AT2G27220 | 50.909 | 55 | 27 | 0 | 94 | 148 | 253 | 307 | 5.31e-13 | 66.2 |
MS.gene027670.t1 | AT5G41410 | 39.130 | 92 | 54 | 1 | 59 | 148 | 361 | 452 | 5.98e-13 | 66.2 |
MS.gene027670.t1 | AT2G23760 | 39.423 | 104 | 51 | 5 | 52 | 148 | 387 | 485 | 1.40e-12 | 65.1 |
MS.gene027670.t1 | AT2G23760 | 39.423 | 104 | 51 | 5 | 52 | 148 | 387 | 485 | 1.40e-12 | 65.1 |
MS.gene027670.t1 | AT2G23760 | 39.423 | 104 | 51 | 5 | 52 | 148 | 387 | 485 | 1.40e-12 | 65.1 |
MS.gene027670.t1 | AT1G75430 | 49.091 | 55 | 28 | 0 | 94 | 148 | 209 | 263 | 1.63e-12 | 64.3 |
MS.gene027670.t1 | AT1G19700 | 50.909 | 55 | 27 | 0 | 94 | 148 | 358 | 412 | 1.84e-12 | 64.7 |
MS.gene027670.t1 | AT1G19700 | 50.909 | 55 | 27 | 0 | 94 | 148 | 358 | 412 | 1.84e-12 | 64.7 |
MS.gene027670.t1 | AT1G19700 | 50.909 | 55 | 27 | 0 | 94 | 148 | 358 | 412 | 1.84e-12 | 64.7 |
MS.gene027670.t1 | AT1G19700 | 50.909 | 55 | 27 | 0 | 94 | 148 | 358 | 412 | 1.84e-12 | 64.7 |
MS.gene027670.t1 | AT1G19700 | 50.909 | 55 | 27 | 0 | 94 | 148 | 358 | 412 | 1.84e-12 | 64.7 |
MS.gene027670.t1 | AT4G36870 | 49.091 | 55 | 28 | 0 | 94 | 148 | 505 | 559 | 5.56e-12 | 63.2 |
MS.gene027670.t1 | AT4G36870 | 49.091 | 55 | 28 | 0 | 94 | 148 | 505 | 559 | 5.56e-12 | 63.2 |
MS.gene027670.t1 | AT2G27990 | 50.909 | 55 | 27 | 0 | 94 | 148 | 431 | 485 | 5.59e-12 | 63.2 |
MS.gene027670.t1 | AT2G35940 | 50.909 | 55 | 27 | 0 | 94 | 148 | 392 | 446 | 5.86e-12 | 63.2 |
MS.gene027670.t1 | AT2G35940 | 50.909 | 55 | 27 | 0 | 94 | 148 | 392 | 446 | 5.86e-12 | 63.2 |
MS.gene027670.t1 | AT2G35940 | 50.909 | 55 | 27 | 0 | 94 | 148 | 392 | 446 | 5.86e-12 | 63.2 |
MS.gene027670.t1 | AT2G16400 | 49.091 | 55 | 28 | 0 | 94 | 148 | 292 | 346 | 7.90e-12 | 62.8 |
MS.gene027670.t1 | AT4G34610 | 49.091 | 55 | 28 | 0 | 94 | 148 | 321 | 375 | 8.18e-12 | 62.8 |
MS.gene027670.t1 | AT4G34610 | 49.091 | 55 | 28 | 0 | 94 | 148 | 321 | 375 | 8.18e-12 | 62.8 |
MS.gene027670.t1 | AT4G34610 | 49.091 | 55 | 28 | 0 | 94 | 148 | 321 | 375 | 8.18e-12 | 62.8 |
MS.gene027670.t1 | AT4G34610 | 49.091 | 55 | 28 | 0 | 94 | 148 | 321 | 375 | 8.18e-12 | 62.8 |
MS.gene027670.t1 | AT1G75410 | 49.091 | 55 | 28 | 0 | 94 | 148 | 353 | 407 | 1.28e-11 | 62.4 |
MS.gene027670.t1 | AT1G75410 | 49.091 | 55 | 28 | 0 | 94 | 148 | 353 | 407 | 1.28e-11 | 62.4 |
Find 40 sgRNAs with CRISPR-Local
Find 90 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGACTAACTTATCTTAAATA+TGG | 0.205457 | 5.2:-23761010 | None:intergenic |
CGCAAATTTGGAAGTCATAT+TGG | 0.217603 | 5.2:+23762244 | MS.gene027670:CDS |
TCATATTGGTACTTTGAAAT+TGG | 0.238802 | 5.2:+23762258 | MS.gene027670:CDS |
ACCAATTGTTAATTTGCTTC+TGG | 0.259235 | 5.2:-23762506 | None:intergenic |
AATGTTTGTCTTGCTTCTTT+TGG | 0.292821 | 5.2:-23762313 | None:intergenic |
ATGGAATAATGTTTAATTAG+AGG | 0.321641 | 5.2:-23760991 | None:intergenic |
TTAATCAAAGAAAACGTCAT+TGG | 0.361817 | 5.2:+23762532 | MS.gene027670:CDS |
ATTGAGTTGGCTAAGTCAAC+AGG | 0.362593 | 5.2:+23762477 | MS.gene027670:CDS |
ACCAGAAGCAAATTAACAAT+TGG | 0.400017 | 5.2:+23762505 | MS.gene027670:CDS |
AGATGATGGTGGTGCATCTT+CGG | 0.425255 | 5.2:+23762138 | MS.gene027670:intron |
GGTCAAATCCTTGTCGGATT+GGG | 0.429769 | 5.2:+23760923 | MS.gene027670:CDS |
CGGTCAAATCCTTGTCGGAT+TGG | 0.430816 | 5.2:+23760922 | MS.gene027670:CDS |
TGGAATAATGTTTAATTAGA+GGG | 0.450535 | 5.2:-23760990 | None:intergenic |
GGTGGAATGTTCACTACAAA+TGG | 0.464796 | 5.2:+23762344 | MS.gene027670:CDS |
CAAGACAAACATTACTTCAA+TGG | 0.465456 | 5.2:+23762323 | MS.gene027670:CDS |
CAAATCCTTGTCGGATTGGG+TGG | 0.476837 | 5.2:+23760926 | MS.gene027670:CDS |
AAGATCGTGAGCTCAAAGAT+AGG | 0.491803 | 5.2:+23762215 | MS.gene027670:CDS |
GAAATATTTACCGTAGGGTA+AGG | 0.498999 | 5.2:-23762367 | None:intergenic |
CGGTTTCTTACTGAAGAATG+AGG | 0.509268 | 5.2:+23762603 | MS.gene027670:CDS |
TGCGACGGTCAAATCCTTGT+CGG | 0.512259 | 5.2:+23760917 | MS.gene027670:CDS |
TTCTTCAGTAAGAAACCGTC+CGG | 0.519958 | 5.2:-23762598 | None:intergenic |
GAAAATTGCATATTCTCAGA+TGG | 0.531157 | 5.2:-23762558 | None:intergenic |
ATGTTCAAGATGGACAATCA+AGG | 0.539011 | 5.2:+23762188 | MS.gene027670:CDS |
TGGGTGTCAGAAGCAACTTA+TGG | 0.553406 | 5.2:+23760946 | MS.gene027670:CDS |
CTACAAATGGCCTTACCCTA+CGG | 0.555178 | 5.2:+23762357 | MS.gene027670:CDS |
TGTTCAAGATGGACAATCAA+GGG | 0.577717 | 5.2:+23762189 | MS.gene027670:CDS |
TCGGACGAAGATCTTAGTAC+AGG | 0.580602 | 5.2:+23762157 | MS.gene027670:CDS |
GACAAACATTACTTCAATGG+TGG | 0.584232 | 5.2:+23762326 | MS.gene027670:CDS |
GGAAGCTGATAAGATTGAGT+TGG | 0.588630 | 5.2:+23762464 | MS.gene027670:intron |
GGAGATGGTGATGTTCAAGA+TGG | 0.589542 | 5.2:+23762178 | MS.gene027670:CDS |
GAAGATCTTAGTACAGGAGA+TGG | 0.592331 | 5.2:+23762163 | MS.gene027670:CDS |
AAATCCTTGTCGGATTGGGT+GGG | 0.603935 | 5.2:+23760927 | MS.gene027670:CDS |
AAGCAACTTATGGCTACTCG+TGG | 0.625490 | 5.2:+23760956 | MS.gene027670:CDS |
GACACCCACCCAATCCGACA+AGG | 0.645121 | 5.2:-23760931 | None:intergenic |
GGTTTCTTACTGAAGAATGA+GGG | 0.647187 | 5.2:+23762604 | MS.gene027670:CDS |
TTTGTTTCGCTAGATGATGG+TGG | 0.653500 | 5.2:+23762127 | MS.gene027670:intron |
AGCAACTTATGGCTACTCGT+GGG | 0.661782 | 5.2:+23760957 | MS.gene027670:CDS |
TTGAGTTGGCTAAGTCAACA+GGG | 0.662111 | 5.2:+23762478 | MS.gene027670:CDS |
GTTCAAGATGGACAATCAAG+GGG | 0.671513 | 5.2:+23762190 | MS.gene027670:CDS |
TACAGTGTACTCTCATGCGA+CGG | 0.676583 | 5.2:+23760902 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AGAATTTTTTCTTATATTTA+AGG | - | chr5.2:23761105-23761124 | None:intergenic | 10.0% |
!!! | TAAGAAAATATTCATTTTTT+AGG | - | chr5.2:23761200-23761219 | None:intergenic | 10.0% |
!! | ACTTTGTATAAATATTAATC+TGG | - | chr5.2:23761663-23761682 | None:intergenic | 15.0% |
!! | TAGTATAAAGTTTAGTAAAT+GGG | - | chr5.2:23762397-23762416 | None:intergenic | 15.0% |
!! | TTAGTATAAAGTTTAGTAAA+TGG | - | chr5.2:23762398-23762417 | None:intergenic | 15.0% |
!!! | AAATATGAAACATTAGTTTA+TGG | + | chr5.2:23761615-23761634 | MS.gene027670:intron | 15.0% |
!!! | TTTTATTTTTGCATAATCAA+TGG | + | chr5.2:23762024-23762043 | MS.gene027670:intron | 15.0% |
!! | ATGGAATAATGTTTAATTAG+AGG | - | chr5.2:23760994-23761013 | None:intergenic | 20.0% |
!! | CCTAAACATTAATTAATCTA+GGG | - | chr5.2:23761062-23761081 | None:intergenic | 20.0% |
!! | TCCAAAAAAAAAAGAACTTA+AGG | + | chr5.2:23761809-23761828 | MS.gene027670:intron | 20.0% |
!! | TCCTAAACATTAATTAATCT+AGG | - | chr5.2:23761063-23761082 | None:intergenic | 20.0% |
!! | TGACTAACTTATCTTAAATA+TGG | - | chr5.2:23761013-23761032 | None:intergenic | 20.0% |
!! | TGCAAAATATACTCTTAAAA+AGG | - | chr5.2:23761960-23761979 | None:intergenic | 20.0% |
!! | TGGAATAATGTTTAATTAGA+GGG | - | chr5.2:23760993-23761012 | None:intergenic | 20.0% |
!!! | ACCTTAAGTTCTTTTTTTTT+TGG | - | chr5.2:23761813-23761832 | None:intergenic | 20.0% |
!!! | GTCAACTTTTTCTTATAATA+AGG | + | chr5.2:23761362-23761381 | MS.gene027670:intron | 20.0% |
!!! | TAAGAAAAAGTTGACTTTTT+AGG | - | chr5.2:23761357-23761376 | None:intergenic | 20.0% |
!!! | TAAGAAACAATTGACTTTTT+TGG | + | chr5.2:23761268-23761287 | MS.gene027670:intron | 20.0% |
!!! | TAAGTTCTTTTTTTTTTGGA+AGG | - | chr5.2:23761809-23761828 | None:intergenic | 20.0% |
!!! | TATTTTCTTATATTTGAGAC+CGG | + | chr5.2:23761210-23761229 | MS.gene027670:intron | 20.0% |
!!! | TTGTTTCTTATAATAAGAAC+CGG | - | chr5.2:23761258-23761277 | None:intergenic | 20.0% |
!!! | TTTTCAAAGAAGAAAAAGAA+GGG | + | chr5.2:23762283-23762302 | MS.gene027670:CDS | 20.0% |
! | AAAAAAGTCGGTAATAATTG+TGG | + | chr5.2:23761442-23761461 | MS.gene027670:intron | 25.0% |
! | CCCTAGATTAATTAATGTTT+AGG | + | chr5.2:23761059-23761078 | MS.gene027670:intron | 25.0% |
! | GAAATGAAATATTTACCGTA+GGG | - | chr5.2:23762375-23762394 | None:intergenic | 25.0% |
! | TTAATCAAAGAAAACGTCAT+TGG | + | chr5.2:23762532-23762551 | MS.gene027670:CDS | 25.0% |
! | TTCTTATAATAAGGACATGA+AGG | + | chr5.2:23761371-23761390 | MS.gene027670:intron | 25.0% |
!! | AATGTTTTACATGATTATGC+AGG | + | chr5.2:23762443-23762462 | MS.gene027670:intron | 25.0% |
!! | GAATATGCAATTTTCTATGA+TGG | + | chr5.2:23762566-23762585 | MS.gene027670:CDS | 25.0% |
!! | GTTTTCAAAGAAGAAAAAGA+AGG | + | chr5.2:23762282-23762301 | MS.gene027670:CDS | 25.0% |
!! | TGTGTCCAATTAATTTGATT+TGG | - | chr5.2:23761592-23761611 | None:intergenic | 25.0% |
!!! | AACACAGTTTGCTTTTTTAA+TGG | + | chr5.2:23761773-23761792 | MS.gene027670:intron | 25.0% |
!!! | CAATGGTGTTTATTTTTGTA+CGG | + | chr5.2:23762041-23762060 | MS.gene027670:intron | 25.0% |
!!! | GTAGATTGACTTTGTATTTT+AGG | + | chr5.2:23761478-23761497 | MS.gene027670:intron | 25.0% |
!!! | TCATATTGGTACTTTGAAAT+TGG | + | chr5.2:23762258-23762277 | MS.gene027670:CDS | 25.0% |
!!! | TCTATGATGGAAAATTTTAC+CGG | + | chr5.2:23762579-23762598 | MS.gene027670:CDS | 25.0% |
!!! | TGCTTTTTTAATGGTTCATA+TGG | + | chr5.2:23761782-23761801 | MS.gene027670:intron | 25.0% |
ACCAGAAGCAAATTAACAAT+TGG | + | chr5.2:23762505-23762524 | MS.gene027670:CDS | 30.0% | |
CAAGACAAACATTACTTCAA+TGG | + | chr5.2:23762323-23762342 | MS.gene027670:CDS | 30.0% | |
CATTGAGTAGTTAATGTATC+TGG | - | chr5.2:23761175-23761194 | None:intergenic | 30.0% | |
GAAAATTGCATATTCTCAGA+TGG | - | chr5.2:23762561-23762580 | None:intergenic | 30.0% | |
GCAAACTTGAAGAAGAAAAA+TGG | + | chr5.2:23761545-23761564 | MS.gene027670:intron | 30.0% | |
GGAAATGAAATATTTACCGT+AGG | - | chr5.2:23762376-23762395 | None:intergenic | 30.0% | |
GGAACAATTCTTACTTAGTA+CGG | + | chr5.2:23761566-23761585 | MS.gene027670:intron | 30.0% | |
TAAGGACATGAAGGAATATT+AGG | + | chr5.2:23761380-23761399 | MS.gene027670:intron | 30.0% | |
TACGGCCAAATCAAATTAAT+TGG | + | chr5.2:23761584-23761603 | MS.gene027670:intron | 30.0% | |
TAGGAAAAAATAAACTCCCT+CGG | + | chr5.2:23761078-23761097 | MS.gene027670:intron | 30.0% | |
TCTAGCGAAACAAAGAAAAT+AGG | - | chr5.2:23762121-23762140 | None:intergenic | 30.0% | |
! | AATGTTTGTCTTGCTTCTTT+TGG | - | chr5.2:23762316-23762335 | None:intergenic | 30.0% |
! | ATTCACCATTTAAGATAAGC+TGG | + | chr5.2:23761403-23761422 | MS.gene027670:intron | 30.0% |
!! | ACCAATTGTTAATTTGCTTC+TGG | - | chr5.2:23762509-23762528 | None:intergenic | 30.0% |
AGGAAAAAATAAACTCCCTC+GGG | + | chr5.2:23761079-23761098 | MS.gene027670:intron | 35.0% | |
ATGTTCAAGATGGACAATCA+AGG | + | chr5.2:23762188-23762207 | MS.gene027670:CDS | 35.0% | |
CGCAAATTTGGAAGTCATAT+TGG | + | chr5.2:23762244-23762263 | MS.gene027670:CDS | 35.0% | |
GAAATATTTACCGTAGGGTA+AGG | - | chr5.2:23762370-23762389 | None:intergenic | 35.0% | |
GACAAACATTACTTCAATGG+TGG | + | chr5.2:23762326-23762345 | MS.gene027670:CDS | 35.0% | |
GAGTAATTAGATACTCTCTC+CGG | + | chr5.2:23761236-23761255 | MS.gene027670:intron | 35.0% | |
GAGTATCTAATTACTCCATC+CGG | - | chr5.2:23761232-23761251 | None:intergenic | 35.0% | |
TCTGACCAGCTTATCTTAAA+TGG | - | chr5.2:23761411-23761430 | None:intergenic | 35.0% | |
TGTTCAAGATGGACAATCAA+GGG | + | chr5.2:23762189-23762208 | MS.gene027670:CDS | 35.0% | |
! | CTCTTAAAAAGGTGTACTGA+TGG | - | chr5.2:23761949-23761968 | None:intergenic | 35.0% |
! | GATAGGCTTTTACGCAAATT+TGG | + | chr5.2:23762232-23762251 | MS.gene027670:CDS | 35.0% |
! | TGATGGAAAATTTTACCGGA+CGG | + | chr5.2:23762583-23762602 | MS.gene027670:CDS | 35.0% |
! | TTCTTATATTTAAGGCCCGA+GGG | - | chr5.2:23761097-23761116 | None:intergenic | 35.0% |
! | TTCTTATATTTGAGACCGGA+TGG | + | chr5.2:23761214-23761233 | MS.gene027670:intron | 35.0% |
! | TTCTTTGTTTCGCTAGATGA+TGG | + | chr5.2:23762124-23762143 | MS.gene027670:intron | 35.0% |
! | TTTCTTATATTTAAGGCCCG+AGG | - | chr5.2:23761098-23761117 | None:intergenic | 35.0% |
AAGATCGTGAGCTCAAAGAT+AGG | + | chr5.2:23762215-23762234 | MS.gene027670:CDS | 40.0% | |
GAAGATCTTAGTACAGGAGA+TGG | + | chr5.2:23762163-23762182 | MS.gene027670:CDS | 40.0% | |
GGAAGCTGATAAGATTGAGT+TGG | + | chr5.2:23762464-23762483 | MS.gene027670:intron | 40.0% | |
GGTGGAATGTTCACTACAAA+TGG | + | chr5.2:23762344-23762363 | MS.gene027670:CDS | 40.0% | |
GTTCAAGATGGACAATCAAG+GGG | + | chr5.2:23762190-23762209 | MS.gene027670:CDS | 40.0% | |
TTCTTCAGTAAGAAACCGTC+CGG | - | chr5.2:23762601-23762620 | None:intergenic | 40.0% | |
! | TTTGTTTCGCTAGATGATGG+TGG | + | chr5.2:23762127-23762146 | MS.gene027670:intron | 40.0% |
!! | ATTGAGTTGGCTAAGTCAAC+AGG | + | chr5.2:23762477-23762496 | MS.gene027670:CDS | 40.0% |
!! | TTGAGTTGGCTAAGTCAACA+GGG | + | chr5.2:23762478-23762497 | MS.gene027670:CDS | 40.0% |
AAGCAACTTATGGCTACTCG+TGG | + | chr5.2:23760956-23760975 | MS.gene027670:CDS | 45.0% | |
AGCAACTTATGGCTACTCGT+GGG | + | chr5.2:23760957-23760976 | MS.gene027670:CDS | 45.0% | |
GGTCAAATCCTTGTCGGATT+GGG | + | chr5.2:23760923-23760942 | MS.gene027670:CDS | 45.0% | |
TCGGACGAAGATCTTAGTAC+AGG | + | chr5.2:23762157-23762176 | MS.gene027670:CDS | 45.0% | |
TGGGTGTCAGAAGCAACTTA+TGG | + | chr5.2:23760946-23760965 | MS.gene027670:CDS | 45.0% | |
! | AAATCCTTGTCGGATTGGGT+GGG | + | chr5.2:23760927-23760946 | MS.gene027670:CDS | 45.0% |
! | CTACAAATGGCCTTACCCTA+CGG | + | chr5.2:23762357-23762376 | MS.gene027670:CDS | 45.0% |
! | GGAGATGGTGATGTTCAAGA+TGG | + | chr5.2:23762178-23762197 | MS.gene027670:CDS | 45.0% |
!! | AGATGATGGTGGTGCATCTT+CGG | + | chr5.2:23762138-23762157 | MS.gene027670:intron | 45.0% |
!!! | ATTATTTTTAAAAAAAAAGT+CGG | + | chr5.2:23761430-23761449 | MS.gene027670:intron | 5.0% |
CGGTCAAATCCTTGTCGGAT+TGG | + | chr5.2:23760922-23760941 | MS.gene027670:CDS | 50.0% | |
TGCGACGGTCAAATCCTTGT+CGG | + | chr5.2:23760917-23760936 | MS.gene027670:CDS | 50.0% | |
! | CAAATCCTTGTCGGATTGGG+TGG | + | chr5.2:23760926-23760945 | MS.gene027670:CDS | 50.0% |
GACACCCACCCAATCCGACA+AGG | - | chr5.2:23760934-23760953 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.2 | gene | 23760916 | 23762623 | 23760916 | ID=MS.gene027670 |
chr5.2 | mRNA | 23760916 | 23762623 | 23760916 | ID=MS.gene027670.t1;Parent=MS.gene027670 |
chr5.2 | exon | 23760916 | 23761024 | 23760916 | ID=MS.gene027670.t1.exon1;Parent=MS.gene027670.t1 |
chr5.2 | CDS | 23760916 | 23761024 | 23760916 | ID=cds.MS.gene027670.t1;Parent=MS.gene027670.t1 |
chr5.2 | exon | 23762140 | 23762378 | 23762140 | ID=MS.gene027670.t1.exon2;Parent=MS.gene027670.t1 |
chr5.2 | CDS | 23762140 | 23762378 | 23762140 | ID=cds.MS.gene027670.t1;Parent=MS.gene027670.t1 |
chr5.2 | exon | 23762465 | 23762623 | 23762465 | ID=MS.gene027670.t1.exon3;Parent=MS.gene027670.t1 |
chr5.2 | CDS | 23762465 | 23762623 | 23762465 | ID=cds.MS.gene027670.t1;Parent=MS.gene027670.t1 |
Gene Sequence |
Protein sequence |