Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027744.t1 | XP_003613092.2 | 96.9 | 256 | 3 | 2 | 1 | 251 | 17 | 272 | 2.40E-92 | 348.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027744.t1 | A2Z259 | 47.2 | 229 | 93 | 3 | 50 | 250 | 49 | 277 | 2.7e-47 | 190.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027744.t1 | G7JXR5 | 96.9 | 256 | 3 | 2 | 1 | 251 | 17 | 272 | 1.8e-92 | 348.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene027744.t1 | TF | zf-HD |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027744.t1 | MTR_5g032600 | 96.875 | 256 | 3 | 2 | 1 | 251 | 17 | 272 | 0.0 | 503 |
| MS.gene027744.t1 | MTR_3g100650 | 55.714 | 210 | 70 | 6 | 54 | 251 | 76 | 274 | 1.57e-66 | 207 |
| MS.gene027744.t1 | MTR_5g065440 | 47.232 | 271 | 92 | 9 | 5 | 251 | 25 | 268 | 1.41e-64 | 202 |
| MS.gene027744.t1 | MTR_2g076780 | 44.017 | 234 | 120 | 4 | 27 | 250 | 4 | 236 | 8.42e-58 | 184 |
| MS.gene027744.t1 | MTR_8g069080 | 42.917 | 240 | 125 | 3 | 18 | 250 | 33 | 267 | 3.02e-56 | 181 |
| MS.gene027744.t1 | MTR_1g077020 | 45.274 | 201 | 83 | 5 | 56 | 250 | 7 | 186 | 8.20e-55 | 175 |
| MS.gene027744.t1 | MTR_7g010300 | 45.833 | 216 | 73 | 6 | 58 | 250 | 88 | 282 | 4.05e-52 | 172 |
| MS.gene027744.t1 | MTR_5g020510 | 42.254 | 213 | 93 | 4 | 55 | 250 | 96 | 295 | 1.68e-51 | 170 |
| MS.gene027744.t1 | MTR_4g134580 | 42.917 | 240 | 86 | 6 | 57 | 250 | 112 | 346 | 2.34e-51 | 171 |
| MS.gene027744.t1 | MTR_6g012280 | 49.246 | 199 | 90 | 4 | 58 | 250 | 91 | 284 | 8.22e-48 | 161 |
| MS.gene027744.t1 | MTR_6g073013 | 37.173 | 191 | 69 | 4 | 58 | 246 | 19 | 160 | 5.98e-33 | 118 |
| MS.gene027744.t1 | MTR_8g069380 | 58.427 | 89 | 30 | 3 | 170 | 251 | 27 | 115 | 7.37e-25 | 95.5 |
| MS.gene027744.t1 | MTR_8g051480 | 61.333 | 75 | 26 | 2 | 178 | 250 | 55 | 128 | 9.18e-23 | 90.5 |
| MS.gene027744.t1 | MTR_8g442330 | 33.121 | 157 | 72 | 3 | 69 | 225 | 16 | 139 | 2.99e-22 | 89.4 |
| MS.gene027744.t1 | MTR_8g467340 | 67.188 | 64 | 20 | 1 | 188 | 250 | 271 | 334 | 1.72e-21 | 92.4 |
| MS.gene027744.t1 | MTR_8g467340 | 71.154 | 52 | 13 | 1 | 58 | 107 | 64 | 115 | 5.20e-18 | 82.8 |
| MS.gene027744.t1 | MTR_3g039810 | 60.345 | 58 | 23 | 0 | 57 | 114 | 19 | 76 | 5.44e-19 | 79.3 |
| MS.gene027744.t1 | MTR_6g012220 | 58.824 | 51 | 17 | 1 | 56 | 106 | 19 | 65 | 5.00e-14 | 65.9 |
| MS.gene027744.t1 | MTR_7g070643 | 58.182 | 55 | 18 | 1 | 42 | 96 | 71 | 120 | 8.73e-12 | 62.4 |
| MS.gene027744.t1 | MTR_6g080300 | 45.312 | 64 | 30 | 1 | 33 | 96 | 34 | 92 | 6.62e-11 | 57.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027744.t1 | AT4G24660 | 54.040 | 198 | 69 | 4 | 54 | 251 | 45 | 220 | 2.39e-67 | 207 |
| MS.gene027744.t1 | AT4G24660 | 53.093 | 194 | 69 | 4 | 54 | 247 | 45 | 216 | 2.39e-64 | 201 |
| MS.gene027744.t1 | AT5G65410 | 50.732 | 205 | 87 | 3 | 47 | 251 | 64 | 254 | 7.44e-62 | 196 |
| MS.gene027744.t1 | AT2G02540 | 45.024 | 211 | 87 | 5 | 57 | 250 | 86 | 284 | 9.99e-59 | 189 |
| MS.gene027744.t1 | AT2G02540 | 45.024 | 211 | 87 | 5 | 57 | 250 | 86 | 284 | 9.99e-59 | 189 |
| MS.gene027744.t1 | AT1G14440 | 44.878 | 205 | 89 | 5 | 57 | 250 | 89 | 280 | 1.04e-52 | 173 |
| MS.gene027744.t1 | AT1G14440 | 44.878 | 205 | 89 | 5 | 57 | 250 | 89 | 280 | 1.04e-52 | 173 |
| MS.gene027744.t1 | AT2G18350 | 46.078 | 204 | 82 | 5 | 54 | 250 | 78 | 260 | 1.94e-50 | 166 |
| MS.gene027744.t1 | AT1G69600 | 45.312 | 192 | 96 | 3 | 58 | 247 | 31 | 215 | 2.13e-46 | 155 |
| MS.gene027744.t1 | AT5G15210 | 47.959 | 196 | 81 | 3 | 56 | 244 | 54 | 235 | 2.68e-45 | 153 |
| MS.gene027744.t1 | AT5G60480 | 39.462 | 223 | 109 | 5 | 27 | 245 | 4 | 204 | 9.84e-44 | 147 |
| MS.gene027744.t1 | AT3G50890 | 42.857 | 203 | 89 | 5 | 56 | 249 | 58 | 242 | 2.04e-41 | 142 |
| MS.gene027744.t1 | AT5G39760 | 41.204 | 216 | 95 | 5 | 58 | 250 | 56 | 262 | 1.22e-40 | 142 |
| MS.gene027744.t1 | AT3G28920 | 40.670 | 209 | 102 | 4 | 55 | 247 | 49 | 251 | 1.79e-40 | 142 |
| MS.gene027744.t1 | AT5G42780 | 36.500 | 200 | 98 | 5 | 55 | 247 | 61 | 238 | 6.95e-28 | 107 |
| MS.gene027744.t1 | AT1G75240 | 75.000 | 52 | 13 | 0 | 56 | 107 | 74 | 125 | 9.79e-24 | 97.4 |
| MS.gene027744.t1 | AT1G74660 | 65.000 | 60 | 21 | 0 | 56 | 115 | 37 | 96 | 1.12e-23 | 92.0 |
| MS.gene027744.t1 | AT1G74660 | 64.407 | 59 | 21 | 0 | 56 | 114 | 37 | 95 | 1.09e-22 | 89.7 |
| MS.gene027744.t1 | AT3G28917 | 56.667 | 60 | 25 | 1 | 56 | 114 | 31 | 90 | 5.46e-18 | 77.0 |
| MS.gene027744.t1 | AT1G18835 | 55.932 | 59 | 23 | 1 | 56 | 114 | 24 | 79 | 5.11e-17 | 74.3 |
Find 72 sgRNAs with CRISPR-Local
Find 76 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCGGGGTATTTGCATGTTTC+TGG | 0.138100 | 5.2:-22593020 | MS.gene027744:CDS |
| GTTGGAGTTAGCTGAGAAAT+TGG | 0.240875 | 5.2:-22592829 | MS.gene027744:CDS |
| TTAACAACTCTTGATGAGTT+TGG | 0.309890 | 5.2:+22593410 | None:intergenic |
| CTTGCTTTACCGTCAACTTC+TGG | 0.335479 | 5.2:-22592978 | MS.gene027744:CDS |
| AGCGTCATGTTCTTAAGGTT+TGG | 0.351100 | 5.2:-22592743 | MS.gene027744:CDS |
| TCAGAAACATGATGAAGGTT+TGG | 0.379981 | 5.2:-22592796 | MS.gene027744:CDS |
| ATTGGTGGTCATGCTCTTGA+TGG | 0.382322 | 5.2:-22593233 | MS.gene027744:CDS |
| TGTTAAGCGTCATGTTCTTA+AGG | 0.403141 | 5.2:-22592748 | MS.gene027744:CDS |
| ACCACCTCCTCCACAGTTTG+CGG | 0.451705 | 5.2:-22593060 | MS.gene027744:CDS |
| TTGGAGTTAGCTGAGAAATT+GGG | 0.451712 | 5.2:-22592828 | MS.gene027744:CDS |
| GTTTCTGGACAGCAGAGGAC+TGG | 0.452007 | 5.2:-22593005 | MS.gene027744:CDS |
| AGCAACATGGTTGGTGGTGT+TGG | 0.458102 | 5.2:-22593305 | MS.gene027744:CDS |
| ATGGTTGGTGGTGTTGGAAA+TGG | 0.467173 | 5.2:-22593299 | MS.gene027744:CDS |
| TGCGGTGAGTTTATGCCGGC+AGG | 0.468779 | 5.2:-22593209 | MS.gene027744:CDS |
| CCGTCAACTTCTGGTGGCGG+TGG | 0.471225 | 5.2:-22592969 | MS.gene027744:CDS |
| GGCAGGAAGTGAAGGAACTT+TGG | 0.482158 | 5.2:-22593192 | MS.gene027744:CDS |
| CATAACAACAAACACACTCT+TGG | 0.491859 | 5.2:-22592717 | MS.gene027744:CDS |
| AATCCAAGTGGTGGTGGAAG+TGG | 0.494106 | 5.2:-22592906 | MS.gene027744:CDS |
| GAACCACTTCCACCACCACT+TGG | 0.498974 | 5.2:+22592903 | None:intergenic |
| AGTGGATGAGTGACCATGAT+AGG | 0.506193 | 5.2:+22593368 | None:intergenic |
| AGAATTCAGAAACATGATGA+AGG | 0.509328 | 5.2:-22592801 | MS.gene027744:CDS |
| TCAACTTCTGGTGGCGGTGG+AGG | 0.510550 | 5.2:-22592966 | MS.gene027744:CDS |
| GCTTATTATCGAACTCCAGC+GGG | 0.510651 | 5.2:-22593038 | MS.gene027744:CDS |
| TCAAGAGTTGTTAAGATGCC+TGG | 0.513910 | 5.2:-22593401 | MS.gene027744:CDS |
| GCCGCAAACTGTGGAGGAGG+TGG | 0.514214 | 5.2:+22593059 | None:intergenic |
| TGATGATGTGTCAACAGAAA+AGG | 0.515803 | 5.2:+22593089 | None:intergenic |
| GTTTCGAATCCAAGTGGTGG+TGG | 0.518013 | 5.2:-22592912 | MS.gene027744:CDS |
| AAGAATCATGCTGTAGGTAT+TGG | 0.519190 | 5.2:-22593251 | MS.gene027744:CDS |
| GCAAACTGTGGAGGAGGTGG+TGG | 0.520707 | 5.2:+22593062 | None:intergenic |
| GTTCAAGCAAGAAGAGGCAT+AGG | 0.530566 | 5.2:-22592884 | MS.gene027744:CDS |
| AATCATGCTGTAGGTATTGG+TGG | 0.532401 | 5.2:-22593248 | MS.gene027744:CDS |
| CCACCGCCACCAGAAGTTGA+CGG | 0.538970 | 5.2:+22592969 | None:intergenic |
| TGGTGGAACTGAACCTATCA+TGG | 0.550765 | 5.2:-22593381 | MS.gene027744:CDS |
| AAAGTTCCTTCACTTCCTGC+CGG | 0.552211 | 5.2:+22593194 | None:intergenic |
| TTACCGTCAACTTCTGGTGG+CGG | 0.554834 | 5.2:-22592972 | MS.gene027744:CDS |
| AAAATTCACGCAGGAACAGA+AGG | 0.559129 | 5.2:-22592859 | MS.gene027744:CDS |
| GATGATGTGTCAACAGAAAA+GGG | 0.562574 | 5.2:+22593090 | None:intergenic |
| TTTCTGGACAGCAGAGGACT+GGG | 0.567641 | 5.2:-22593004 | MS.gene027744:CDS |
| GGAACAGAAGGATAAGATGT+TGG | 0.570619 | 5.2:-22592847 | MS.gene027744:CDS |
| GAGGAAGAATTATGTATGGG+TGG | 0.575821 | 5.2:-22593452 | None:intergenic |
| TAAGCCGCAAACTGTGGAGG+AGG | 0.578740 | 5.2:+22593056 | None:intergenic |
| GGTCATGCTCTTGATGGTTG+CGG | 0.581532 | 5.2:-22593227 | MS.gene027744:CDS |
| GCTTTACCGTCAACTTCTGG+TGG | 0.583371 | 5.2:-22592975 | MS.gene027744:CDS |
| GAAGAATTATGTATGGGTGG+AGG | 0.586004 | 5.2:-22593449 | None:intergenic |
| GTGGAGGTACGCAGAGTACG+AGG | 0.588222 | 5.2:-22592950 | MS.gene027744:CDS |
| AGTTAGCTGAGAAATTGGGT+TGG | 0.589225 | 5.2:-22592824 | MS.gene027744:CDS |
| TTTATGCCGGCAGGAAGTGA+AGG | 0.589438 | 5.2:-22593200 | MS.gene027744:CDS |
| TGTCAACAGAAAAGGGTCAC+CGG | 0.601235 | 5.2:+22593097 | None:intergenic |
| CGATAATAAGCCGCAAACTG+TGG | 0.606257 | 5.2:+22593050 | None:intergenic |
| TCATCCGCAGATGTTACTGC+CGG | 0.613004 | 5.2:-22593116 | MS.gene027744:CDS |
| ACTGTGGAGGAGGTGGTGGA+TGG | 0.613020 | 5.2:+22593066 | None:intergenic |
| TGGTTGCGGTGAGTTTATGC+CGG | 0.613273 | 5.2:-22593213 | MS.gene027744:CDS |
| GGCTTATTATCGAACTCCAG+CGG | 0.614746 | 5.2:-22593039 | MS.gene027744:CDS |
| AATGGAAACAGCAACATGGT+TGG | 0.615914 | 5.2:-22593314 | MS.gene027744:CDS |
| CAAGAATTCTGTAATGAAAG+CGG | 0.619098 | 5.2:-22592771 | MS.gene027744:CDS |
| TTGTTAAGGATGTTTCTGAG+TGG | 0.621550 | 5.2:+22593350 | None:intergenic |
| GAAACATGCAAATACCCCGC+TGG | 0.623881 | 5.2:+22593023 | None:intergenic |
| TGTCTGAAGAATCATGCTGT+AGG | 0.629570 | 5.2:-22593257 | MS.gene027744:CDS |
| CAACAATGGAAACAGCAACA+TGG | 0.631699 | 5.2:-22593318 | MS.gene027744:CDS |
| TGCATGTTTCTGGACAGCAG+AGG | 0.639645 | 5.2:-22593010 | MS.gene027744:CDS |
| GGAAACAGCAACATGGTTGG+TGG | 0.639744 | 5.2:-22593311 | MS.gene027744:CDS |
| TAATAAGCCGCAAACTGTGG+AGG | 0.641002 | 5.2:+22593053 | None:intergenic |
| ATGATAGGTTCAGTTCCACC+AGG | 0.642551 | 5.2:+22593383 | None:intergenic |
| GAAGTGGTTCAAGCAAGAAG+AGG | 0.644871 | 5.2:-22592890 | MS.gene027744:CDS |
| AGAGTTGTTAAGATGCCTGG+TGG | 0.674556 | 5.2:-22593398 | MS.gene027744:CDS |
| GAAGATGTTTCGAATCCAAG+TGG | 0.685294 | 5.2:-22592918 | MS.gene027744:CDS |
| TGGAGGTACGCAGAGTACGA+GGG | 0.690082 | 5.2:-22592949 | MS.gene027744:CDS |
| GTGTTGGAAATGGAAAAGCA+AGG | 0.695951 | 5.2:-22593289 | MS.gene027744:CDS |
| GTCACCGGCAGTAACATCTG+CGG | 0.711890 | 5.2:+22593112 | None:intergenic |
| GCATAGGACAAAATTCACGC+AGG | 0.713722 | 5.2:-22592868 | MS.gene027744:CDS |
| CTTATTATCGAACTCCAGCG+GGG | 0.719650 | 5.2:-22593037 | MS.gene027744:CDS |
| GATGTTTCGAATCCAAGTGG+TGG | 0.738004 | 5.2:-22592915 | MS.gene027744:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| AACAACAACAACAACAACAA+TGG | - | chr5.2:22592809-22592828 | MS.gene027744:CDS | 30.0% | |
| AGAATTCAGAAACATGATGA+AGG | - | chr5.2:22593340-22593359 | MS.gene027744:CDS | 30.0% | |
| CAAGAATTCTGTAATGAAAG+CGG | - | chr5.2:22593370-22593389 | MS.gene027744:CDS | 30.0% | |
| TTAACAACTCTTGATGAGTT+TGG | + | chr5.2:22592734-22592753 | None:intergenic | 30.0% | |
| ! | TGTTGTTGTTGTTGTTGTTA+AGG | + | chr5.2:22592808-22592827 | None:intergenic | 30.0% |
| AAGAATCATGCTGTAGGTAT+TGG | - | chr5.2:22592890-22592909 | MS.gene027744:CDS | 35.0% | |
| CATAACAACAAACACACTCT+TGG | - | chr5.2:22593424-22593443 | MS.gene027744:CDS | 35.0% | |
| GATGATGTGTCAACAGAAAA+GGG | + | chr5.2:22593054-22593073 | None:intergenic | 35.0% | |
| TCAGAAACATGATGAAGGTT+TGG | - | chr5.2:22593345-22593364 | MS.gene027744:CDS | 35.0% | |
| TGTTAAGCGTCATGTTCTTA+AGG | - | chr5.2:22593393-22593412 | MS.gene027744:CDS | 35.0% | |
| TTGGAGTTAGCTGAGAAATT+GGG | - | chr5.2:22593313-22593332 | MS.gene027744:CDS | 35.0% | |
| ! | TGATGATGTGTCAACAGAAA+AGG | + | chr5.2:22593055-22593074 | None:intergenic | 35.0% |
| ! | TTGTTAAGGATGTTTCTGAG+TGG | + | chr5.2:22592794-22592813 | None:intergenic | 35.0% |
| AAAATTCACGCAGGAACAGA+AGG | - | chr5.2:22593282-22593301 | MS.gene027744:CDS | 40.0% | |
| AATGGAAACAGCAACATGGT+TGG | - | chr5.2:22592827-22592846 | MS.gene027744:CDS | 40.0% | |
| AGCGTCATGTTCTTAAGGTT+TGG | - | chr5.2:22593398-22593417 | MS.gene027744:CDS | 40.0% | |
| AGTTAGCTGAGAAATTGGGT+TGG | - | chr5.2:22593317-22593336 | MS.gene027744:CDS | 40.0% | |
| CAACAATGGAAACAGCAACA+TGG | - | chr5.2:22592823-22592842 | MS.gene027744:CDS | 40.0% | |
| GAAGATGTTTCGAATCCAAG+TGG | - | chr5.2:22593223-22593242 | MS.gene027744:CDS | 40.0% | |
| GGAACAGAAGGATAAGATGT+TGG | - | chr5.2:22593294-22593313 | MS.gene027744:CDS | 40.0% | |
| GTGTTGGAAATGGAAAAGCA+AGG | - | chr5.2:22592852-22592871 | MS.gene027744:CDS | 40.0% | |
| GTTGGAGTTAGCTGAGAAAT+TGG | - | chr5.2:22593312-22593331 | MS.gene027744:CDS | 40.0% | |
| TCAAGAGTTGTTAAGATGCC+TGG | - | chr5.2:22592740-22592759 | MS.gene027744:CDS | 40.0% | |
| TGTCTGAAGAATCATGCTGT+AGG | - | chr5.2:22592884-22592903 | MS.gene027744:CDS | 40.0% | |
| ! | ACTCTTTTCGGTGGAAGTTA+CGG | + | chr5.2:22593006-22593025 | None:intergenic | 40.0% |
| !! | AATCATGCTGTAGGTATTGG+TGG | - | chr5.2:22592893-22592912 | MS.gene027744:CDS | 40.0% |
| AAAGTTCCTTCACTTCCTGC+CGG | + | chr5.2:22592950-22592969 | None:intergenic | 45.0% | |
| AGAGTTGTTAAGATGCCTGG+TGG | - | chr5.2:22592743-22592762 | MS.gene027744:CDS | 45.0% | |
| AGTGGATGAGTGACCATGAT+AGG | + | chr5.2:22592776-22592795 | None:intergenic | 45.0% | |
| ATGATAGGTTCAGTTCCACC+AGG | + | chr5.2:22592761-22592780 | None:intergenic | 45.0% | |
| CGATAATAAGCCGCAAACTG+TGG | + | chr5.2:22593094-22593113 | None:intergenic | 45.0% | |
| CTTATTATCGAACTCCAGCG+GGG | - | chr5.2:22593104-22593123 | MS.gene027744:CDS | 45.0% | |
| CTTGCTTTACCGTCAACTTC+TGG | - | chr5.2:22593163-22593182 | MS.gene027744:CDS | 45.0% | |
| GAAGTGGTTCAAGCAAGAAG+AGG | - | chr5.2:22593251-22593270 | MS.gene027744:CDS | 45.0% | |
| GATGTTTCGAATCCAAGTGG+TGG | - | chr5.2:22593226-22593245 | MS.gene027744:CDS | 45.0% | |
| GCATAGGACAAAATTCACGC+AGG | - | chr5.2:22593273-22593292 | MS.gene027744:CDS | 45.0% | |
| GCTTATTATCGAACTCCAGC+GGG | - | chr5.2:22593103-22593122 | MS.gene027744:CDS | 45.0% | |
| GGCTTATTATCGAACTCCAG+CGG | - | chr5.2:22593102-22593121 | MS.gene027744:CDS | 45.0% | |
| TAATAAGCCGCAAACTGTGG+AGG | + | chr5.2:22593091-22593110 | None:intergenic | 45.0% | |
| TGGTGGAACTGAACCTATCA+TGG | - | chr5.2:22592760-22592779 | MS.gene027744:CDS | 45.0% | |
| TGTCAACAGAAAAGGGTCAC+CGG | + | chr5.2:22593047-22593066 | None:intergenic | 45.0% | |
| ! | ATTGGTGGTCATGCTCTTGA+TGG | - | chr5.2:22592908-22592927 | MS.gene027744:CDS | 45.0% |
| ! | CATCTGCGGATGACTCTTTT+CGG | + | chr5.2:22593018-22593037 | None:intergenic | 45.0% |
| ! | GTTCAAGCAAGAAGAGGCAT+AGG | - | chr5.2:22593257-22593276 | MS.gene027744:CDS | 45.0% |
| !! | ATGGTTGGTGGTGTTGGAAA+TGG | - | chr5.2:22592842-22592861 | MS.gene027744:CDS | 45.0% |
| GAAACATGCAAATACCCCGC+TGG | + | chr5.2:22593121-22593140 | None:intergenic | 50.0% | |
| GCTTTACCGTCAACTTCTGG+TGG | - | chr5.2:22593166-22593185 | MS.gene027744:CDS | 50.0% | |
| GGAAACAGCAACATGGTTGG+TGG | - | chr5.2:22592830-22592849 | MS.gene027744:CDS | 50.0% | |
| GGCAGGAAGTGAAGGAACTT+TGG | - | chr5.2:22592949-22592968 | MS.gene027744:CDS | 50.0% | |
| GTTTCGAATCCAAGTGGTGG+TGG | - | chr5.2:22593229-22593248 | MS.gene027744:CDS | 50.0% | |
| TCATCCGCAGATGTTACTGC+CGG | - | chr5.2:22593025-22593044 | MS.gene027744:CDS | 50.0% | |
| TGGTTGCGGTGAGTTTATGC+CGG | - | chr5.2:22592928-22592947 | MS.gene027744:CDS | 50.0% | |
| TTACCGTCAACTTCTGGTGG+CGG | - | chr5.2:22593169-22593188 | MS.gene027744:CDS | 50.0% | |
| TTTATGCCGGCAGGAAGTGA+AGG | - | chr5.2:22592941-22592960 | MS.gene027744:CDS | 50.0% | |
| TTTCTGGACAGCAGAGGACT+GGG | - | chr5.2:22593137-22593156 | MS.gene027744:CDS | 50.0% | |
| ! | CTTTTCGGTGGAAGTTACGG+TGG | + | chr5.2:22593003-22593022 | None:intergenic | 50.0% |
| ! | GCGGGGTATTTGCATGTTTC+TGG | - | chr5.2:22593121-22593140 | MS.gene027744:CDS | 50.0% |
| ! | GGTCATGCTCTTGATGGTTG+CGG | - | chr5.2:22592914-22592933 | MS.gene027744:CDS | 50.0% |
| !! | AATCCAAGTGGTGGTGGAAG+TGG | - | chr5.2:22593235-22593254 | MS.gene027744:CDS | 50.0% |
| !! | AGCAACATGGTTGGTGGTGT+TGG | - | chr5.2:22592836-22592855 | MS.gene027744:CDS | 50.0% |
| !! | TGCATGTTTCTGGACAGCAG+AGG | - | chr5.2:22593131-22593150 | MS.gene027744:CDS | 50.0% |
| ACCACCTCCTCCACAGTTTG+CGG | - | chr5.2:22593081-22593100 | MS.gene027744:CDS | 55.0% | |
| GAACCACTTCCACCACCACT+TGG | + | chr5.2:22593241-22593260 | None:intergenic | 55.0% | |
| GTCACCGGCAGTAACATCTG+CGG | + | chr5.2:22593032-22593051 | None:intergenic | 55.0% | |
| TAAGCCGCAAACTGTGGAGG+AGG | + | chr5.2:22593088-22593107 | None:intergenic | 55.0% | |
| ! | CTGCGGATGACTCTTTTCGG+TGG | + | chr5.2:22593015-22593034 | None:intergenic | 55.0% |
| ! | GTTTCTGGACAGCAGAGGAC+TGG | - | chr5.2:22593136-22593155 | MS.gene027744:CDS | 55.0% |
| ! | TGGAGGTACGCAGAGTACGA+GGG | - | chr5.2:22593192-22593211 | MS.gene027744:CDS | 55.0% |
| CCACCGCCACCAGAAGTTGA+CGG | + | chr5.2:22593175-22593194 | None:intergenic | 60.0% | |
| GCAAACTGTGGAGGAGGTGG+TGG | + | chr5.2:22593082-22593101 | None:intergenic | 60.0% | |
| TGCGGTGAGTTTATGCCGGC+AGG | - | chr5.2:22592932-22592951 | MS.gene027744:CDS | 60.0% | |
| ! | GTGGAGGTACGCAGAGTACG+AGG | - | chr5.2:22593191-22593210 | MS.gene027744:CDS | 60.0% |
| !! | ACTGTGGAGGAGGTGGTGGA+TGG | + | chr5.2:22593078-22593097 | None:intergenic | 60.0% |
| !! | TCAACTTCTGGTGGCGGTGG+AGG | - | chr5.2:22593175-22593194 | MS.gene027744:CDS | 60.0% |
| GCCGCAAACTGTGGAGGAGG+TGG | + | chr5.2:22593085-22593104 | None:intergenic | 65.0% | |
| !! | CCGTCAACTTCTGGTGGCGG+TGG | - | chr5.2:22593172-22593191 | MS.gene027744:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 22592704 | 22593459 | 22592704 | ID=MS.gene027744 |
| chr5.2 | mRNA | 22592704 | 22593459 | 22592704 | ID=MS.gene027744.t1;Parent=MS.gene027744 |
| chr5.2 | exon | 22592704 | 22593459 | 22592704 | ID=MS.gene027744.t1.exon1;Parent=MS.gene027744.t1 |
| chr5.2 | CDS | 22592704 | 22593459 | 22592704 | ID=cds.MS.gene027744.t1;Parent=MS.gene027744.t1 |
| Gene Sequence |
| Protein sequence |