Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene027814.t1 | XP_003612994.1 | 94.4 | 302 | 7 | 3 | 1 | 300 | 43 | 336 | 2.90E-132 | 481.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene027814.t1 | Q9LSL6 | 36.5 | 315 | 146 | 13 | 1 | 300 | 41 | 316 | 1.6e-35 | 151.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene027814.t1 | G7KGJ7 | 94.4 | 302 | 7 | 3 | 1 | 300 | 43 | 336 | 2.1e-132 | 481.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene027814.t1 | TF | C2C2-Dof |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene027814.t1 | MTR_5g031440 | 94.371 | 302 | 7 | 3 | 1 | 300 | 43 | 336 | 0.0 | 580 |
MS.gene027814.t1 | MTR_8g068210 | 48.204 | 334 | 112 | 12 | 1 | 300 | 32 | 338 | 3.46e-78 | 241 |
MS.gene027814.t1 | MTR_8g479350 | 71.250 | 80 | 23 | 0 | 1 | 80 | 68 | 147 | 2.41e-36 | 133 |
MS.gene027814.t1 | MTR_2g096740 | 60.000 | 95 | 38 | 0 | 1 | 95 | 62 | 156 | 1.10e-35 | 130 |
MS.gene027814.t1 | MTR_2g096740 | 60.000 | 95 | 38 | 0 | 1 | 95 | 77 | 171 | 1.39e-35 | 130 |
MS.gene027814.t1 | MTR_4g063780 | 65.169 | 89 | 22 | 2 | 1 | 80 | 75 | 163 | 4.77e-34 | 127 |
MS.gene027814.t1 | MTR_4g088580 | 68.000 | 75 | 24 | 0 | 2 | 76 | 56 | 130 | 1.49e-32 | 124 |
MS.gene027814.t1 | MTR_8g027295 | 45.395 | 152 | 65 | 5 | 1 | 136 | 24 | 173 | 2.65e-32 | 120 |
MS.gene027814.t1 | MTR_7g059400 | 59.091 | 110 | 31 | 3 | 2 | 102 | 77 | 181 | 5.91e-32 | 121 |
MS.gene027814.t1 | MTR_7g024670 | 80.000 | 60 | 12 | 0 | 2 | 61 | 78 | 137 | 6.65e-31 | 119 |
MS.gene027814.t1 | MTR_4g022370 | 81.818 | 55 | 10 | 0 | 1 | 55 | 82 | 136 | 3.65e-30 | 117 |
MS.gene027814.t1 | MTR_3g090430 | 70.588 | 68 | 17 | 1 | 3 | 67 | 53 | 120 | 8.78e-30 | 115 |
MS.gene027814.t1 | MTR_4g461080 | 86.792 | 53 | 7 | 0 | 1 | 53 | 29 | 81 | 1.07e-29 | 114 |
MS.gene027814.t1 | MTR_2g093220 | 83.636 | 55 | 9 | 0 | 1 | 55 | 40 | 94 | 1.21e-29 | 114 |
MS.gene027814.t1 | MTR_4g109980 | 88.235 | 51 | 6 | 0 | 1 | 51 | 40 | 90 | 2.62e-29 | 114 |
MS.gene027814.t1 | MTR_2g014060 | 90.196 | 51 | 5 | 0 | 2 | 52 | 26 | 76 | 7.00e-29 | 113 |
MS.gene027814.t1 | MTR_3g091820 | 80.000 | 55 | 11 | 0 | 1 | 55 | 43 | 97 | 9.13e-29 | 112 |
MS.gene027814.t1 | MTR_8g015840 | 74.603 | 63 | 15 | 1 | 1 | 63 | 20 | 81 | 1.43e-28 | 109 |
MS.gene027814.t1 | MTR_1g056810 | 84.906 | 53 | 8 | 0 | 3 | 55 | 14 | 66 | 1.55e-28 | 111 |
MS.gene027814.t1 | MTR_3g077750 | 84.314 | 51 | 8 | 0 | 1 | 51 | 61 | 111 | 3.61e-28 | 111 |
MS.gene027814.t1 | MTR_1g077600 | 78.182 | 55 | 12 | 0 | 1 | 55 | 43 | 97 | 1.04e-27 | 108 |
MS.gene027814.t1 | MTR_1g077600 | 78.182 | 55 | 12 | 0 | 1 | 55 | 43 | 97 | 1.16e-27 | 108 |
MS.gene027814.t1 | MTR_2g014170 | 83.673 | 49 | 8 | 0 | 1 | 49 | 45 | 93 | 9.81e-27 | 107 |
MS.gene027814.t1 | MTR_8g079060 | 74.545 | 55 | 14 | 0 | 1 | 55 | 29 | 83 | 1.27e-26 | 104 |
MS.gene027814.t1 | MTR_2g059540 | 83.673 | 49 | 8 | 0 | 1 | 49 | 31 | 79 | 1.29e-26 | 103 |
MS.gene027814.t1 | MTR_4g089095 | 73.684 | 57 | 14 | 1 | 1 | 57 | 50 | 105 | 6.41e-26 | 104 |
MS.gene027814.t1 | MTR_4g089095 | 73.684 | 57 | 14 | 1 | 1 | 57 | 16 | 71 | 7.83e-26 | 103 |
MS.gene027814.t1 | MTR_2g013370 | 71.930 | 57 | 15 | 1 | 1 | 57 | 46 | 101 | 1.48e-25 | 103 |
MS.gene027814.t1 | MTR_6g012450 | 72.222 | 54 | 15 | 0 | 1 | 54 | 136 | 189 | 8.30e-24 | 101 |
MS.gene027814.t1 | MTR_4g082060 | 64.407 | 59 | 21 | 0 | 1 | 59 | 122 | 180 | 1.21e-23 | 100 |
MS.gene027814.t1 | MTR_2g016030 | 70.370 | 54 | 16 | 0 | 1 | 54 | 47 | 100 | 1.34e-23 | 94.7 |
MS.gene027814.t1 | MTR_7g010950 | 70.370 | 54 | 16 | 0 | 1 | 54 | 135 | 188 | 1.38e-23 | 100 |
MS.gene027814.t1 | MTR_8g044220 | 48.936 | 94 | 37 | 2 | 1 | 83 | 118 | 211 | 2.58e-23 | 99.4 |
MS.gene027814.t1 | MTR_7g086780 | 67.241 | 58 | 19 | 0 | 1 | 58 | 99 | 156 | 2.72e-23 | 99.4 |
MS.gene027814.t1 | MTR_3g435480 | 66.102 | 59 | 20 | 0 | 1 | 59 | 136 | 194 | 5.25e-23 | 98.6 |
MS.gene027814.t1 | MTR_6g027450 | 62.069 | 58 | 22 | 0 | 1 | 58 | 89 | 146 | 8.09e-23 | 96.7 |
MS.gene027814.t1 | MTR_6g027460 | 62.069 | 58 | 22 | 0 | 1 | 58 | 96 | 153 | 5.24e-22 | 95.1 |
MS.gene027814.t1 | MTR_5g041420 | 68.519 | 54 | 17 | 0 | 1 | 54 | 138 | 191 | 1.07e-21 | 93.6 |
MS.gene027814.t1 | MTR_5g041530 | 68.519 | 54 | 17 | 0 | 1 | 54 | 140 | 193 | 1.76e-21 | 93.6 |
MS.gene027814.t1 | MTR_5g041380 | 57.576 | 66 | 28 | 0 | 1 | 66 | 127 | 192 | 2.88e-20 | 90.1 |
MS.gene027814.t1 | MTR_5g041400 | 64.815 | 54 | 19 | 0 | 1 | 54 | 119 | 172 | 4.45e-20 | 89.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene027814.t1 | AT5G65590 | 42.671 | 307 | 138 | 14 | 1 | 300 | 41 | 316 | 3.02e-63 | 202 |
MS.gene027814.t1 | AT5G60200 | 76.562 | 64 | 15 | 0 | 1 | 64 | 55 | 118 | 6.29e-33 | 122 |
MS.gene027814.t1 | AT1G51700 | 80.000 | 65 | 12 | 1 | 1 | 64 | 33 | 97 | 1.14e-32 | 119 |
MS.gene027814.t1 | AT2G28510 | 44.828 | 174 | 84 | 5 | 3 | 175 | 50 | 212 | 1.60e-32 | 122 |
MS.gene027814.t1 | AT2G37590 | 82.456 | 57 | 10 | 0 | 1 | 57 | 89 | 145 | 2.22e-32 | 122 |
MS.gene027814.t1 | AT3G55370 | 76.562 | 64 | 15 | 0 | 1 | 64 | 76 | 139 | 1.23e-31 | 120 |
MS.gene027814.t1 | AT3G55370 | 76.562 | 64 | 15 | 0 | 1 | 64 | 76 | 139 | 1.78e-31 | 120 |
MS.gene027814.t1 | AT1G07640 | 85.455 | 55 | 8 | 0 | 1 | 55 | 21 | 75 | 2.37e-31 | 118 |
MS.gene027814.t1 | AT3G55370 | 76.562 | 64 | 15 | 0 | 1 | 64 | 121 | 184 | 2.52e-31 | 120 |
MS.gene027814.t1 | AT1G07640 | 85.455 | 55 | 8 | 0 | 1 | 55 | 77 | 131 | 3.14e-31 | 119 |
MS.gene027814.t1 | AT1G07640 | 85.455 | 55 | 8 | 0 | 1 | 55 | 85 | 139 | 3.95e-31 | 119 |
MS.gene027814.t1 | AT3G21270 | 88.679 | 53 | 6 | 0 | 1 | 53 | 29 | 81 | 4.38e-31 | 115 |
MS.gene027814.t1 | AT3G52440 | 61.053 | 95 | 26 | 2 | 3 | 97 | 27 | 110 | 5.17e-31 | 117 |
MS.gene027814.t1 | AT3G52440 | 61.053 | 95 | 26 | 2 | 3 | 97 | 46 | 129 | 7.66e-31 | 117 |
MS.gene027814.t1 | AT5G02460 | 83.636 | 55 | 9 | 0 | 1 | 55 | 95 | 149 | 1.98e-30 | 118 |
MS.gene027814.t1 | AT2G28810 | 84.615 | 52 | 8 | 0 | 1 | 52 | 77 | 128 | 2.08e-30 | 117 |
MS.gene027814.t1 | AT5G60850 | 79.310 | 58 | 12 | 0 | 1 | 58 | 51 | 108 | 3.70e-30 | 116 |
MS.gene027814.t1 | AT2G28810 | 84.615 | 52 | 8 | 0 | 1 | 52 | 94 | 145 | 3.74e-30 | 116 |
MS.gene027814.t1 | AT4G38000 | 66.250 | 80 | 26 | 1 | 1 | 79 | 41 | 120 | 2.44e-29 | 112 |
MS.gene027814.t1 | AT1G28310 | 78.947 | 57 | 12 | 0 | 1 | 57 | 27 | 83 | 2.55e-29 | 114 |
MS.gene027814.t1 | AT1G28310 | 78.947 | 57 | 12 | 0 | 1 | 57 | 51 | 107 | 4.22e-29 | 114 |
MS.gene027814.t1 | AT3G45610 | 72.581 | 62 | 17 | 0 | 1 | 62 | 40 | 101 | 4.70e-29 | 111 |
MS.gene027814.t1 | AT3G61850 | 52.679 | 112 | 42 | 4 | 1 | 111 | 62 | 163 | 1.03e-28 | 111 |
MS.gene027814.t1 | AT3G61850 | 52.679 | 112 | 42 | 4 | 1 | 111 | 62 | 163 | 1.03e-28 | 111 |
MS.gene027814.t1 | AT3G61850 | 52.679 | 112 | 42 | 4 | 1 | 111 | 74 | 175 | 1.16e-28 | 112 |
MS.gene027814.t1 | AT4G21050 | 73.333 | 60 | 16 | 0 | 3 | 62 | 26 | 85 | 1.29e-28 | 109 |
MS.gene027814.t1 | AT3G61850 | 52.679 | 112 | 42 | 4 | 1 | 111 | 62 | 163 | 1.40e-28 | 112 |
MS.gene027814.t1 | AT1G21340 | 70.968 | 62 | 18 | 0 | 3 | 64 | 40 | 101 | 1.68e-28 | 110 |
MS.gene027814.t1 | AT3G61850 | 52.679 | 112 | 42 | 4 | 1 | 111 | 74 | 175 | 1.90e-28 | 112 |
MS.gene027814.t1 | AT5G62940 | 84.000 | 50 | 8 | 0 | 2 | 51 | 74 | 123 | 5.37e-27 | 108 |
MS.gene027814.t1 | AT4G24060 | 78.182 | 55 | 12 | 0 | 1 | 55 | 53 | 107 | 5.42e-27 | 108 |
MS.gene027814.t1 | AT4G00940 | 79.630 | 54 | 11 | 0 | 3 | 56 | 70 | 123 | 7.21e-27 | 107 |
MS.gene027814.t1 | AT4G00940 | 79.630 | 54 | 11 | 0 | 3 | 56 | 70 | 123 | 7.21e-27 | 107 |
MS.gene027814.t1 | AT4G00940 | 79.630 | 54 | 11 | 0 | 3 | 56 | 70 | 123 | 7.21e-27 | 107 |
MS.gene027814.t1 | AT3G50410 | 74.545 | 55 | 14 | 0 | 1 | 55 | 30 | 84 | 2.14e-26 | 104 |
MS.gene027814.t1 | AT5G66940 | 64.516 | 62 | 22 | 0 | 1 | 62 | 32 | 93 | 1.37e-25 | 102 |
MS.gene027814.t1 | AT2G46590 | 81.250 | 48 | 9 | 0 | 1 | 48 | 68 | 115 | 2.13e-24 | 101 |
MS.gene027814.t1 | AT2G46590 | 81.250 | 48 | 9 | 0 | 1 | 48 | 80 | 127 | 2.47e-24 | 101 |
MS.gene027814.t1 | AT1G64620 | 78.000 | 50 | 11 | 0 | 1 | 50 | 49 | 98 | 3.01e-24 | 100 |
MS.gene027814.t1 | AT3G47500 | 55.422 | 83 | 33 | 1 | 1 | 83 | 110 | 188 | 1.78e-23 | 100 |
MS.gene027814.t1 | AT2G34140 | 70.370 | 54 | 16 | 0 | 1 | 54 | 58 | 111 | 3.01e-23 | 94.4 |
MS.gene027814.t1 | AT4G21040 | 66.667 | 63 | 20 | 1 | 3 | 64 | 27 | 89 | 3.10e-23 | 95.9 |
MS.gene027814.t1 | AT1G29160 | 70.370 | 54 | 16 | 0 | 1 | 54 | 62 | 115 | 3.17e-23 | 94.4 |
MS.gene027814.t1 | AT5G62430 | 70.370 | 54 | 16 | 0 | 1 | 54 | 54 | 107 | 3.60e-23 | 97.1 |
MS.gene027814.t1 | AT1G69570 | 66.102 | 59 | 20 | 0 | 1 | 59 | 132 | 190 | 4.56e-23 | 98.2 |
MS.gene027814.t1 | AT5G39660 | 70.370 | 54 | 16 | 0 | 1 | 54 | 138 | 191 | 5.40e-23 | 98.6 |
MS.gene027814.t1 | AT5G39660 | 70.370 | 54 | 16 | 0 | 1 | 54 | 138 | 191 | 5.40e-23 | 98.6 |
MS.gene027814.t1 | AT5G39660 | 70.370 | 54 | 16 | 0 | 1 | 54 | 138 | 191 | 5.40e-23 | 98.6 |
MS.gene027814.t1 | AT1G26790 | 52.381 | 84 | 39 | 1 | 1 | 84 | 111 | 193 | 7.97e-23 | 97.4 |
MS.gene027814.t1 | AT4G21080 | 65.079 | 63 | 21 | 1 | 3 | 64 | 27 | 89 | 1.26e-22 | 94.7 |
MS.gene027814.t1 | AT1G47655 | 71.429 | 49 | 14 | 0 | 1 | 49 | 29 | 77 | 2.07e-22 | 93.2 |
MS.gene027814.t1 | AT4G21030 | 50.000 | 64 | 30 | 1 | 3 | 64 | 23 | 86 | 4.59e-14 | 70.1 |
Find 39 sgRNAs with CRISPR-Local
Find 55 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTCAAGATTCTGAAACAAAA+TGG | 0.209045 | 5.2:-21717987 | None:intergenic |
TTCTCTTTCTTCACCTTCCA+TGG | 0.316516 | 5.2:+21717574 | MS.gene027814:CDS |
TTATAATTACCTGATGAAAA+AGG | 0.326439 | 5.2:-21717764 | None:intergenic |
GCAAAACATGTAGAAGATAT+TGG | 0.332074 | 5.2:+21717399 | MS.gene027814:CDS |
TTTCTCCAAAAGATGAAAAC+TGG | 0.363395 | 5.2:-21717679 | None:intergenic |
TCTTCTTCTTCAGAGCTTGT+TGG | 0.374369 | 5.2:+21717533 | MS.gene027814:CDS |
TGGAATGGTGGTGGTGTTCA+TGG | 0.417264 | 5.2:+21718157 | MS.gene027814:CDS |
TAGGAGTAGTAGAAATTTGA+GGG | 0.447158 | 5.2:-21717649 | None:intergenic |
TGTAGAAGATATTGGACAAA+AGG | 0.447881 | 5.2:+21717407 | MS.gene027814:CDS |
ATGGTGGTGGTGTTCATGGT+TGG | 0.454006 | 5.2:+21718161 | MS.gene027814:CDS |
TGATTATGAAGTTGAAGTCT+TGG | 0.460479 | 5.2:-21717626 | None:intergenic |
CGCAACGTTCCGATCGGTGG+TGG | 0.463601 | 5.2:+21717440 | MS.gene027814:CDS |
TCAAGATTCTGAAACAAAAT+GGG | 0.479207 | 5.2:-21717986 | None:intergenic |
TCTTCTTCAGAGCTTGTTGG+TGG | 0.480751 | 5.2:+21717536 | MS.gene027814:CDS |
GTAGCTTCCAGTGCAAGTCT+TGG | 0.484387 | 5.2:-21717874 | None:intergenic |
ATAGGAGTAGTAGAAATTTG+AGG | 0.486036 | 5.2:-21717650 | None:intergenic |
CCTACTGCAAGTGGTGGAGC+TGG | 0.519120 | 5.2:+21718115 | MS.gene027814:CDS |
GGTGGAGCTGGACATGATAG+TGG | 0.524755 | 5.2:+21718127 | MS.gene027814:CDS |
GTGTTGGGTGAGTCACATCT+TGG | 0.525160 | 5.2:-21717326 | None:intergenic |
AATTATAATGGTGCAATACA+AGG | 0.531532 | 5.2:+21717779 | MS.gene027814:CDS |
CTATGAACCAAGACTTGCAC+TGG | 0.534331 | 5.2:+21717867 | MS.gene027814:CDS |
TGGAAGGTGAAGAAAGAGAA+TGG | 0.535036 | 5.2:-21717571 | None:intergenic |
GATTCTGAAACAAAATGGGT+TGG | 0.535817 | 5.2:-21717982 | None:intergenic |
GACATGATAGTGGAAGCAAC+TGG | 0.536262 | 5.2:+21718137 | MS.gene027814:CDS |
GATGAAAACTGGTTATACAT+AGG | 0.549549 | 5.2:-21717668 | None:intergenic |
TGAAACAAAATGGGTTGGAG+TGG | 0.578171 | 5.2:-21717977 | None:intergenic |
GCTTTACGCAACGTTCCGAT+CGG | 0.580359 | 5.2:+21717434 | MS.gene027814:CDS |
AGAAGATATTGGACAAAAGG+TGG | 0.584366 | 5.2:+21717410 | MS.gene027814:CDS |
TTTCTACATCCACCACCGAT+CGG | 0.595566 | 5.2:-21717449 | None:intergenic |
ACTACCAAGATGAAAATCCA+TGG | 0.598151 | 5.2:-21717591 | None:intergenic |
TTACGCAACGTTCCGATCGG+TGG | 0.599673 | 5.2:+21717437 | MS.gene027814:CDS |
CCAAGATGAAAATCCATGGA+AGG | 0.609817 | 5.2:-21717587 | None:intergenic |
CCAGCTCCACCACTTGCAGT+AGG | 0.633722 | 5.2:-21718115 | None:intergenic |
GAGAAGATGCAGCAACTGAG+TGG | 0.651408 | 5.2:+21718056 | MS.gene027814:CDS |
GGAAGCAACTGGAATGGTGG+TGG | 0.653313 | 5.2:+21718148 | MS.gene027814:CDS |
AGTGGAAGCAACTGGAATGG+TGG | 0.673960 | 5.2:+21718145 | MS.gene027814:CDS |
GCTGCTACACCTACTGCAAG+TGG | 0.675331 | 5.2:+21718106 | MS.gene027814:CDS |
GCTACACCTACTGCAAGTGG+TGG | 0.683188 | 5.2:+21718109 | MS.gene027814:CDS |
GATAGTGGAAGCAACTGGAA+TGG | 0.689100 | 5.2:+21718142 | MS.gene027814:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTATAATTACCTGATGAAAA+AGG | - | chr5.2:21717767-21717786 | None:intergenic | 20.0% |
!!! | TTTTCATCAGGTAATTATAA+TGG | + | chr5.2:21717767-21717786 | MS.gene027814:CDS | 20.0% |
! | AATTATAATGGTGCAATACA+AGG | + | chr5.2:21717779-21717798 | MS.gene027814:CDS | 25.0% |
!! | CAAAGATTATCTATGCTTTT+TGG | + | chr5.2:21717902-21717921 | MS.gene027814:CDS | 25.0% |
!! | TATAACCAGTTTTCATCTTT+TGG | + | chr5.2:21717674-21717693 | MS.gene027814:CDS | 25.0% |
!!! | TCAAGATTCTGAAACAAAAT+GGG | - | chr5.2:21717989-21718008 | None:intergenic | 25.0% |
ATAGGAGTAGTAGAAATTTG+AGG | - | chr5.2:21717653-21717672 | None:intergenic | 30.0% | |
GATGAAAACTGGTTATACAT+AGG | - | chr5.2:21717671-21717690 | None:intergenic | 30.0% | |
GCAAAACATGTAGAAGATAT+TGG | + | chr5.2:21717399-21717418 | MS.gene027814:CDS | 30.0% | |
TAGGAGTAGTAGAAATTTGA+GGG | - | chr5.2:21717652-21717671 | None:intergenic | 30.0% | |
TGATTATGAAGTTGAAGTCT+TGG | - | chr5.2:21717629-21717648 | None:intergenic | 30.0% | |
TGTAGAAGATATTGGACAAA+AGG | + | chr5.2:21717407-21717426 | MS.gene027814:CDS | 30.0% | |
TTTCTCCAAAAGATGAAAAC+TGG | - | chr5.2:21717682-21717701 | None:intergenic | 30.0% | |
! | TAGTAGCAGAATTTTGTGTT+GGG | - | chr5.2:21717344-21717363 | None:intergenic | 30.0% |
!! | AGATTATCTATGCTTTTTGG+TGG | + | chr5.2:21717905-21717924 | MS.gene027814:CDS | 30.0% |
!! | ATGAACTATCCTTTTTCATC+AGG | + | chr5.2:21717755-21717774 | MS.gene027814:CDS | 30.0% |
!! | CATTTTGTTTCAGAATCTTG+AGG | + | chr5.2:21717988-21718007 | MS.gene027814:CDS | 30.0% |
!! | CTCAAGATTCTGAAACAAAA+TGG | - | chr5.2:21717990-21718009 | None:intergenic | 30.0% |
!!! | TGGTTTTTTGGGAATTCTTA+TGG | + | chr5.2:21718076-21718095 | MS.gene027814:CDS | 30.0% |
ACTACCAAGATGAAAATCCA+TGG | - | chr5.2:21717594-21717613 | None:intergenic | 35.0% | |
AGAAGATATTGGACAAAAGG+TGG | + | chr5.2:21717410-21717429 | MS.gene027814:CDS | 35.0% | |
! | ATGGATTTTCATCTTGGTAG+TGG | + | chr5.2:21717593-21717612 | MS.gene027814:CDS | 35.0% |
! | CATGTTTTGCAGAAATGTCT+TGG | - | chr5.2:21717389-21717408 | None:intergenic | 35.0% |
! | GTAGTAGCAGAATTTTGTGT+TGG | - | chr5.2:21717345-21717364 | None:intergenic | 35.0% |
!! | GATGATAGAGCTTTTTCTGT+TGG | + | chr5.2:21718022-21718041 | MS.gene027814:CDS | 35.0% |
!! | GATTCTGAAACAAAATGGGT+TGG | - | chr5.2:21717985-21718004 | None:intergenic | 35.0% |
!! | TTATCTATGCTTTTTGGTGG+TGG | + | chr5.2:21717908-21717927 | MS.gene027814:CDS | 35.0% |
CCAAGATGAAAATCCATGGA+AGG | - | chr5.2:21717590-21717609 | None:intergenic | 40.0% | |
TCTTCTTCTTCAGAGCTTGT+TGG | + | chr5.2:21717533-21717552 | MS.gene027814:CDS | 40.0% | |
TGGAAGGTGAAGAAAGAGAA+TGG | - | chr5.2:21717574-21717593 | None:intergenic | 40.0% | |
TTCTCTTTCTTCACCTTCCA+TGG | + | chr5.2:21717574-21717593 | MS.gene027814:CDS | 40.0% | |
! | CCTTCCATGGATTTTCATCT+TGG | + | chr5.2:21717587-21717606 | MS.gene027814:CDS | 40.0% |
!! | TGAAACAAAATGGGTTGGAG+TGG | - | chr5.2:21717980-21717999 | None:intergenic | 40.0% |
!!! | CAGCAACTGAGTGGTTTTTT+GGG | + | chr5.2:21718065-21718084 | MS.gene027814:CDS | 40.0% |
CTATGAACCAAGACTTGCAC+TGG | + | chr5.2:21717867-21717886 | MS.gene027814:CDS | 45.0% | |
TTTCTACATCCACCACCGAT+CGG | - | chr5.2:21717452-21717471 | None:intergenic | 45.0% | |
!! | GACATGATAGTGGAAGCAAC+TGG | + | chr5.2:21718137-21718156 | MS.gene027814:CDS | 45.0% |
!! | GATAGTGGAAGCAACTGGAA+TGG | + | chr5.2:21718142-21718161 | MS.gene027814:CDS | 45.0% |
!! | TCTTCTTCAGAGCTTGTTGG+TGG | + | chr5.2:21717536-21717555 | MS.gene027814:CDS | 45.0% |
!!! | GCAGCAACTGAGTGGTTTTT+TGG | + | chr5.2:21718064-21718083 | MS.gene027814:CDS | 45.0% |
AGTGGAAGCAACTGGAATGG+TGG | + | chr5.2:21718145-21718164 | MS.gene027814:CDS | 50.0% | |
GAGAAGATGCAGCAACTGAG+TGG | + | chr5.2:21718056-21718075 | MS.gene027814:CDS | 50.0% | |
GCTTTACGCAACGTTCCGAT+CGG | + | chr5.2:21717434-21717453 | MS.gene027814:CDS | 50.0% | |
GTAGCTTCCAGTGCAAGTCT+TGG | - | chr5.2:21717877-21717896 | None:intergenic | 50.0% | |
GTGTTGGGTGAGTCACATCT+TGG | - | chr5.2:21717329-21717348 | None:intergenic | 50.0% | |
!! | ATGGTGGTGGTGTTCATGGT+TGG | + | chr5.2:21718161-21718180 | MS.gene027814:CDS | 50.0% |
!! | TGGAATGGTGGTGGTGTTCA+TGG | + | chr5.2:21718157-21718176 | MS.gene027814:CDS | 50.0% |
GCTACACCTACTGCAAGTGG+TGG | + | chr5.2:21718109-21718128 | MS.gene027814:CDS | 55.0% | |
GCTGCTACACCTACTGCAAG+TGG | + | chr5.2:21718106-21718125 | MS.gene027814:CDS | 55.0% | |
GGAAGCAACTGGAATGGTGG+TGG | + | chr5.2:21718148-21718167 | MS.gene027814:CDS | 55.0% | |
GGTGGAGCTGGACATGATAG+TGG | + | chr5.2:21718127-21718146 | MS.gene027814:CDS | 55.0% | |
TTACGCAACGTTCCGATCGG+TGG | + | chr5.2:21717437-21717456 | MS.gene027814:CDS | 55.0% | |
CCAGCTCCACCACTTGCAGT+AGG | - | chr5.2:21718118-21718137 | None:intergenic | 60.0% | |
! | CCTACTGCAAGTGGTGGAGC+TGG | + | chr5.2:21718115-21718134 | MS.gene027814:CDS | 60.0% |
CGCAACGTTCCGATCGGTGG+TGG | + | chr5.2:21717440-21717459 | MS.gene027814:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.2 | gene | 21717317 | 21718219 | 21717317 | ID=MS.gene027814 |
chr5.2 | mRNA | 21717317 | 21718219 | 21717317 | ID=MS.gene027814.t1;Parent=MS.gene027814 |
chr5.2 | exon | 21717317 | 21718219 | 21717317 | ID=MS.gene027814.t1.exon1;Parent=MS.gene027814.t1 |
chr5.2 | CDS | 21717317 | 21718219 | 21717317 | ID=cds.MS.gene027814.t1;Parent=MS.gene027814.t1 |
Gene Sequence |
Protein sequence |