Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027857.t1 | XP_003612938.1 | 97.2 | 325 | 7 | 1 | 1 | 323 | 1 | 325 | 2.30E-175 | 624.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027857.t1 | Q9LSL1 | 60.6 | 254 | 84 | 6 | 77 | 323 | 107 | 351 | 2.4e-69 | 263.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027857.t1 | A9YWR2 | 97.2 | 325 | 7 | 1 | 1 | 323 | 1 | 325 | 1.6e-175 | 624.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene027857.t1 | TF | bHLH |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027857.t1 | MTR_5g030770 | 97.231 | 325 | 7 | 1 | 1 | 323 | 1 | 325 | 0.0 | 644 |
| MS.gene027857.t1 | MTR_5g030770 | 95.385 | 325 | 7 | 2 | 1 | 323 | 1 | 319 | 0.0 | 625 |
| MS.gene027857.t1 | MTR_7g076840 | 71.906 | 299 | 15 | 6 | 5 | 303 | 2 | 231 | 2.63e-129 | 369 |
| MS.gene027857.t1 | MTR_3g111290 | 51.585 | 347 | 134 | 14 | 1 | 323 | 1 | 337 | 1.18e-90 | 274 |
| MS.gene027857.t1 | MTR_3g498695 | 46.798 | 203 | 79 | 7 | 140 | 320 | 287 | 482 | 2.63e-40 | 147 |
| MS.gene027857.t1 | MTR_3g498695 | 45.500 | 200 | 87 | 4 | 140 | 320 | 287 | 483 | 4.68e-40 | 146 |
| MS.gene027857.t1 | MTR_7g083900 | 44.211 | 190 | 85 | 3 | 152 | 320 | 284 | 473 | 5.67e-40 | 146 |
| MS.gene027857.t1 | MTR_7g083900 | 44.560 | 193 | 81 | 5 | 152 | 320 | 284 | 474 | 3.25e-39 | 144 |
| MS.gene027857.t1 | MTR_3g030700 | 41.053 | 190 | 95 | 6 | 139 | 314 | 184 | 370 | 2.30e-33 | 126 |
| MS.gene027857.t1 | MTR_7g065690 | 47.973 | 148 | 37 | 6 | 30 | 177 | 26 | 133 | 1.14e-32 | 118 |
| MS.gene027857.t1 | MTR_2g081040 | 39.785 | 186 | 93 | 5 | 152 | 318 | 175 | 360 | 3.28e-32 | 123 |
| MS.gene027857.t1 | MTR_3g104100 | 39.560 | 182 | 91 | 5 | 152 | 314 | 193 | 374 | 5.96e-31 | 120 |
| MS.gene027857.t1 | MTR_1g112680 | 28.972 | 214 | 104 | 5 | 142 | 313 | 305 | 512 | 1.95e-21 | 95.1 |
| MS.gene027857.t1 | MTR_5g014640 | 26.630 | 184 | 125 | 3 | 140 | 313 | 140 | 323 | 2.73e-15 | 75.9 |
| MS.gene027857.t1 | MTR_1g072320 | 30.939 | 181 | 103 | 3 | 153 | 312 | 469 | 648 | 3.53e-15 | 76.6 |
| MS.gene027857.t1 | MTR_8g064700 | 27.513 | 189 | 121 | 3 | 140 | 314 | 230 | 416 | 8.73e-15 | 75.1 |
| MS.gene027857.t1 | MTR_2g038040 | 33.544 | 158 | 83 | 4 | 150 | 285 | 48 | 205 | 2.13e-14 | 72.0 |
| MS.gene027857.t1 | MTR_8g024790 | 30.556 | 180 | 99 | 6 | 152 | 316 | 289 | 457 | 2.48e-14 | 73.9 |
| MS.gene027857.t1 | MTR_4g092700 | 23.390 | 295 | 183 | 8 | 32 | 312 | 60 | 325 | 4.11e-14 | 72.4 |
| MS.gene027857.t1 | MTR_5g030430 | 30.723 | 166 | 89 | 5 | 151 | 293 | 490 | 652 | 1.23e-13 | 72.0 |
| MS.gene027857.t1 | MTR_4g057270 | 53.448 | 58 | 27 | 0 | 153 | 210 | 148 | 205 | 1.89e-13 | 70.5 |
| MS.gene027857.t1 | MTR_2g104560 | 26.984 | 189 | 117 | 5 | 143 | 314 | 41 | 225 | 2.21e-13 | 68.9 |
| MS.gene027857.t1 | MTR_2g084280 | 30.114 | 176 | 104 | 5 | 147 | 309 | 126 | 295 | 3.19e-13 | 69.7 |
| MS.gene027857.t1 | MTR_8g027495 | 29.167 | 144 | 93 | 3 | 147 | 286 | 453 | 591 | 4.91e-13 | 70.1 |
| MS.gene027857.t1 | MTR_2g010450 | 27.329 | 161 | 101 | 3 | 145 | 289 | 162 | 322 | 6.39e-13 | 68.9 |
| MS.gene027857.t1 | MTR_7g117670 | 28.261 | 138 | 96 | 2 | 151 | 286 | 399 | 535 | 1.25e-12 | 68.9 |
| MS.gene027857.t1 | MTR_5g014520 | 30.464 | 151 | 96 | 2 | 145 | 286 | 148 | 298 | 1.28e-12 | 68.2 |
| MS.gene027857.t1 | MTR_8g024770 | 30.872 | 149 | 86 | 4 | 152 | 285 | 277 | 423 | 1.70e-12 | 68.2 |
| MS.gene027857.t1 | MTR_7g096350 | 35.789 | 95 | 59 | 1 | 151 | 243 | 352 | 446 | 3.93e-12 | 67.0 |
| MS.gene027857.t1 | MTR_8g067280 | 28.834 | 163 | 96 | 4 | 151 | 293 | 459 | 621 | 7.01e-12 | 66.6 |
| MS.gene027857.t1 | MTR_6g047550 | 41.860 | 86 | 44 | 3 | 131 | 212 | 148 | 231 | 3.21e-11 | 63.2 |
| MS.gene027857.t1 | MTR_4g009110 | 27.222 | 180 | 108 | 4 | 107 | 274 | 138 | 306 | 6.08e-11 | 63.2 |
| MS.gene027857.t1 | MTR_4g066460 | 43.478 | 69 | 39 | 0 | 141 | 209 | 142 | 210 | 7.18e-11 | 62.8 |
| MS.gene027857.t1 | MTR_4g066380 | 43.478 | 69 | 39 | 0 | 141 | 209 | 140 | 208 | 8.37e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene027857.t1 | AT5G65640 | 68.657 | 201 | 57 | 2 | 129 | 323 | 151 | 351 | 2.31e-84 | 258 |
| MS.gene027857.t1 | AT5G10570 | 47.647 | 340 | 123 | 10 | 11 | 323 | 4 | 315 | 3.13e-76 | 236 |
| MS.gene027857.t1 | AT1G12860 | 46.739 | 184 | 83 | 3 | 152 | 320 | 265 | 448 | 1.09e-40 | 147 |
| MS.gene027857.t1 | AT3G26744 | 45.213 | 188 | 84 | 2 | 152 | 320 | 305 | 492 | 3.44e-39 | 144 |
| MS.gene027857.t1 | AT3G26744 | 45.213 | 188 | 84 | 2 | 152 | 320 | 305 | 492 | 3.44e-39 | 144 |
| MS.gene027857.t1 | AT3G26744 | 45.213 | 188 | 84 | 2 | 152 | 320 | 305 | 492 | 3.44e-39 | 144 |
| MS.gene027857.t1 | AT5G65640 | 66.667 | 117 | 33 | 2 | 129 | 239 | 151 | 267 | 8.79e-37 | 134 |
| MS.gene027857.t1 | AT1G12860 | 48.750 | 160 | 67 | 3 | 152 | 296 | 265 | 424 | 1.43e-36 | 136 |
| MS.gene027857.t1 | AT3G26744 | 46.951 | 164 | 68 | 2 | 152 | 296 | 305 | 468 | 3.59e-35 | 133 |
| MS.gene027857.t1 | AT2G16910 | 35.644 | 202 | 93 | 8 | 153 | 319 | 313 | 512 | 1.38e-21 | 95.5 |
| MS.gene027857.t1 | AT4G09820 | 30.058 | 173 | 106 | 4 | 143 | 314 | 352 | 510 | 2.02e-17 | 83.2 |
| MS.gene027857.t1 | AT4G29930 | 35.036 | 137 | 83 | 2 | 153 | 284 | 53 | 188 | 1.92e-16 | 77.4 |
| MS.gene027857.t1 | AT4G29930 | 35.766 | 137 | 79 | 3 | 153 | 284 | 53 | 185 | 2.68e-16 | 77.0 |
| MS.gene027857.t1 | AT4G29930 | 35.766 | 137 | 79 | 3 | 153 | 284 | 53 | 185 | 4.11e-16 | 76.6 |
| MS.gene027857.t1 | AT5G46760 | 30.220 | 182 | 108 | 5 | 151 | 317 | 412 | 589 | 4.97e-15 | 76.3 |
| MS.gene027857.t1 | AT2G46510 | 35.849 | 106 | 57 | 2 | 151 | 255 | 392 | 487 | 1.62e-14 | 74.7 |
| MS.gene027857.t1 | AT4G29930 | 51.667 | 60 | 29 | 0 | 153 | 212 | 53 | 112 | 2.58e-14 | 70.5 |
| MS.gene027857.t1 | AT4G17880 | 29.814 | 161 | 98 | 3 | 151 | 299 | 413 | 570 | 3.94e-14 | 73.6 |
| MS.gene027857.t1 | AT4G29930 | 51.667 | 60 | 29 | 0 | 153 | 212 | 53 | 112 | 6.23e-14 | 70.9 |
| MS.gene027857.t1 | AT4G29930 | 51.667 | 60 | 29 | 0 | 153 | 212 | 53 | 112 | 7.75e-14 | 70.9 |
| MS.gene027857.t1 | AT4G29930 | 51.667 | 60 | 29 | 0 | 153 | 212 | 53 | 112 | 7.75e-14 | 70.9 |
| MS.gene027857.t1 | AT4G37850 | 30.055 | 183 | 111 | 5 | 117 | 284 | 113 | 293 | 1.57e-13 | 70.9 |
| MS.gene027857.t1 | AT4G37850 | 30.055 | 183 | 111 | 5 | 117 | 284 | 113 | 293 | 1.57e-13 | 70.9 |
| MS.gene027857.t1 | AT5G57150 | 28.834 | 163 | 98 | 2 | 153 | 297 | 53 | 215 | 7.62e-13 | 67.8 |
| MS.gene027857.t1 | AT5G57150 | 29.801 | 151 | 88 | 2 | 153 | 285 | 53 | 203 | 8.37e-13 | 67.0 |
| MS.gene027857.t1 | AT5G57150 | 29.012 | 162 | 97 | 2 | 153 | 296 | 54 | 215 | 9.22e-13 | 67.0 |
| MS.gene027857.t1 | AT5G57150 | 29.801 | 151 | 88 | 2 | 153 | 285 | 54 | 204 | 1.02e-12 | 67.0 |
| MS.gene027857.t1 | AT2G28160 | 44.444 | 72 | 35 | 1 | 139 | 210 | 121 | 187 | 1.27e-12 | 67.8 |
| MS.gene027857.t1 | AT2G28160 | 44.444 | 72 | 35 | 1 | 139 | 210 | 121 | 187 | 1.39e-12 | 67.8 |
| MS.gene027857.t1 | AT5G57150 | 29.801 | 151 | 88 | 2 | 153 | 285 | 54 | 204 | 1.92e-12 | 66.6 |
| MS.gene027857.t1 | AT2G22760 | 28.105 | 153 | 94 | 4 | 155 | 293 | 120 | 270 | 5.43e-12 | 65.9 |
| MS.gene027857.t1 | AT2G22760 | 28.105 | 153 | 94 | 4 | 155 | 293 | 120 | 270 | 6.98e-12 | 65.5 |
| MS.gene027857.t1 | AT1G10610 | 31.469 | 143 | 81 | 3 | 149 | 276 | 229 | 369 | 2.75e-11 | 64.3 |
| MS.gene027857.t1 | AT1G10610 | 31.469 | 143 | 81 | 3 | 149 | 276 | 259 | 399 | 3.33e-11 | 64.3 |
| MS.gene027857.t1 | AT1G10610 | 31.469 | 143 | 81 | 3 | 149 | 276 | 162 | 302 | 3.66e-11 | 63.9 |
| MS.gene027857.t1 | AT1G63650 | 28.947 | 152 | 77 | 3 | 155 | 277 | 406 | 555 | 3.95e-11 | 64.3 |
| MS.gene027857.t1 | AT1G63650 | 28.947 | 152 | 77 | 3 | 155 | 277 | 406 | 555 | 3.95e-11 | 64.3 |
| MS.gene027857.t1 | AT1G63650 | 28.947 | 152 | 77 | 3 | 155 | 277 | 406 | 555 | 3.95e-11 | 64.3 |
| MS.gene027857.t1 | AT1G32640 | 45.763 | 59 | 32 | 0 | 151 | 209 | 449 | 507 | 5.01e-11 | 63.9 |
Find 66 sgRNAs with CRISPR-Local
Find 106 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAATCACCTTGCTGATCTT+AGG | 0.222682 | 5.4:+21002094 | None:intergenic |
| AGGCTGTCCTTCAACCCTTT+TGG | 0.223211 | 5.4:+21002192 | None:intergenic |
| AGTGATTGCTTTATCTCTTC+AGG | 0.235636 | 5.4:+21000884 | None:intergenic |
| CAAGAAGGTATTCAAGAGTT+TGG | 0.254436 | 5.4:-21002334 | MS.gene027857:CDS |
| ACTCCTTAGAAATTCCTAAA+AGG | 0.268635 | 5.4:+21001631 | None:intergenic |
| CATAGATTTGAATGTCCTTA+TGG | 0.286074 | 5.4:-21002436 | MS.gene027857:CDS |
| GATGGACAGGACATCAATTC+TGG | 0.305340 | 5.4:-21001742 | MS.gene027857:CDS |
| TTCCCATGTGTTTAGGTAGA+TGG | 0.318517 | 5.4:-21000926 | MS.gene027857:intron |
| TCATCATACCCTTATCTTGA+TGG | 0.320494 | 5.4:-21002403 | MS.gene027857:CDS |
| AGATAAAGCAATCACTATTC+AGG | 0.330105 | 5.4:-21000877 | MS.gene027857:CDS |
| TTTCTTACCATTACTTCATT+TGG | 0.330225 | 5.4:+21001603 | None:intergenic |
| GAGTCAAAGGTCCAACCATT+AGG | 0.336189 | 5.4:+21002529 | None:intergenic |
| CCTTCTTGTTGTGGTAAAAC+TGG | 0.362326 | 5.4:+21002349 | None:intergenic |
| CATTCAAATCTATGGTCTAA+TGG | 0.372381 | 5.4:+21002445 | None:intergenic |
| TAGTAAGTTACAAGAAGAAA+TGG | 0.377782 | 5.4:-21001679 | MS.gene027857:CDS |
| ATTCAAGAGTTTGGATTTGT+TGG | 0.383281 | 5.4:-21002325 | MS.gene027857:CDS |
| CAGTAACAATCCTGGCTTTG+TGG | 0.397442 | 5.4:+21001428 | None:intergenic |
| GAATCACCTTGCTGATCTTA+GGG | 0.398992 | 5.4:+21002095 | None:intergenic |
| AATGAGTTACTACTCCCTAA+TGG | 0.409168 | 5.4:-21002544 | MS.gene027857:CDS |
| CATAAGGACATTCAAATCTA+TGG | 0.410090 | 5.4:+21002437 | None:intergenic |
| ACAGCCTTCAAAGAATCTTA+TGG | 0.411193 | 5.4:-21002176 | MS.gene027857:CDS |
| ATCTGCTGTGCCACAAAGCC+AGG | 0.416938 | 5.4:-21001438 | MS.gene027857:CDS |
| GCAAATGAAGGGTTTAAAGA+TGG | 0.426120 | 5.4:+21002481 | None:intergenic |
| CTATTCAGGAATGCAGGTTA+TGG | 0.429722 | 5.4:-21000863 | MS.gene027857:CDS |
| GTGATTGCTTTATCTCTTCA+GGG | 0.432133 | 5.4:+21000885 | None:intergenic |
| GAAGAAAGCGTTTGAATGAC+AGG | 0.437266 | 5.4:-21002141 | MS.gene027857:CDS |
| TCAGCCATAAGATTCTTTGA+AGG | 0.448137 | 5.4:+21002172 | None:intergenic |
| AGTCAAAGGTCCAACCATTA+GGG | 0.456761 | 5.4:+21002530 | None:intergenic |
| TGATGTTGAGAGGGGAGACC+AGG | 0.460810 | 5.4:-21001475 | MS.gene027857:CDS |
| AAAATGGAACTTTCTCAACT+TGG | 0.469304 | 5.4:-21002628 | MS.gene027857:CDS |
| ATGACAGGCTTTCCATGCTT+AGG | 0.479470 | 5.4:-21002126 | MS.gene027857:CDS |
| GCCAAATCCAAAAGGGTTGA+AGG | 0.482278 | 5.4:-21002199 | MS.gene027857:CDS |
| AGATGCTGATTCTTGTGTCC+TGG | 0.493855 | 5.4:+21001457 | None:intergenic |
| ACTGAGAATCCATCAAGATA+AGG | 0.498561 | 5.4:+21002394 | None:intergenic |
| CTGAGAATCCATCAAGATAA+GGG | 0.499837 | 5.4:+21002395 | None:intergenic |
| TAAGTTACAAGAAGAAATGG+AGG | 0.505778 | 5.4:-21001676 | MS.gene027857:CDS |
| ACATGAAAGAGCTTCTAGAA+AGG | 0.506584 | 5.4:-21001704 | MS.gene027857:CDS |
| TAAAATCAGCTGCAAAATTG+AGG | 0.511801 | 5.4:-21002275 | MS.gene027857:CDS |
| ATGGACAGGACATCAATTCT+GGG | 0.515613 | 5.4:-21001741 | MS.gene027857:CDS |
| ACATGGAATACTTTATCCAC+TGG | 0.522465 | 5.4:-21002571 | MS.gene027857:CDS |
| CAATCACTATTCAGGAATGC+AGG | 0.523750 | 5.4:-21000869 | MS.gene027857:CDS |
| TTCAGGAATGCAGGTTATGG+TGG | 0.533157 | 5.4:-21000860 | MS.gene027857:CDS |
| TCTTGAATACCTTCTTGTTG+TGG | 0.535058 | 5.4:+21002340 | None:intergenic |
| GATGATGCATCAGTTCCATA+AGG | 0.540398 | 5.4:+21002421 | None:intergenic |
| GTTAAAGCCAAATGAAGTAA+TGG | 0.545862 | 5.4:-21001610 | MS.gene027857:CDS |
| AGAATCTTATGGCTGAAAGA+AGG | 0.549094 | 5.4:-21002165 | MS.gene027857:CDS |
| TTGTTGGAAGTGAGAACAAG+AGG | 0.555475 | 5.4:-21002309 | MS.gene027857:CDS |
| AGTTACTACTCCCTAATGGT+TGG | 0.559379 | 5.4:-21002540 | MS.gene027857:CDS |
| CAAGAAGAAATGGAGGAAGA+AGG | 0.564987 | 5.4:-21001669 | MS.gene027857:CDS |
| GTGAACACATTAGAAGCATT+AGG | 0.568569 | 5.4:-21001399 | MS.gene027857:CDS |
| ACTGTTGACAGTAACAATCC+TGG | 0.569200 | 5.4:+21001420 | None:intergenic |
| TTATGGTGGGAGATGTCTCT+AGG | 0.570179 | 5.4:-21000846 | None:intergenic |
| GTTGAGAATGAAGCAAATGA+AGG | 0.578645 | 5.4:+21002469 | None:intergenic |
| TTTCAGTTTGATGTTGAGAG+GGG | 0.602477 | 5.4:-21001483 | MS.gene027857:intron |
| TAACACACTGGTGAATCTCA+AGG | 0.606173 | 5.4:+21001376 | None:intergenic |
| TCAGGAATGCAGGTTATGGT+GGG | 0.610095 | 5.4:-21000859 | MS.gene027857:CDS |
| TTGAGAATGAAGCAAATGAA+GGG | 0.614806 | 5.4:+21002470 | None:intergenic |
| AATGGTAAGAAATTCCCCTA+AGG | 0.619045 | 5.4:-21001592 | MS.gene027857:intron |
| TGAAACTGCTTATAACACAC+TGG | 0.622427 | 5.4:+21001364 | None:intergenic |
| GGTGCTGAATCATCAAACTC+AGG | 0.624297 | 5.4:+21002370 | None:intergenic |
| AGGGACAATTGACCTAAGCA+TGG | 0.627542 | 5.4:+21002114 | None:intergenic |
| TAGTAACTCATTCAAACCAG+TGG | 0.629735 | 5.4:+21002555 | None:intergenic |
| TAGCTCCAAGAAAAGACACA+TGG | 0.656108 | 5.4:-21002588 | MS.gene027857:CDS |
| ATTGCAAGCATCTTGCTCAG+AGG | 0.660283 | 5.4:-21001331 | MS.gene027857:intron |
| GGAACTAAACCATACCTTAG+GGG | 0.677566 | 5.4:+21001578 | None:intergenic |
| AATTGTCCCTAAGATCAGCA+AGG | 0.709185 | 5.4:-21002101 | MS.gene027857:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTACATTTATTCATAAACT+TGG | + | chr5.4:21001946-21001965 | None:intergenic | 15.0% |
| !! | TTATGAATAAATGTAATGAA+TGG | - | chr5.4:21001949-21001968 | MS.gene027857:intron | 15.0% |
| !!! | AAAATGTAAATTTTGTAAGA+TGG | - | chr5.4:21001712-21001731 | MS.gene027857:CDS | 15.0% |
| !! | ATAATTGATCATGAAAAGTT+TGG | - | chr5.4:21002266-21002285 | MS.gene027857:CDS | 20.0% |
| !! | CTGAACATAAATACATATAT+CGG | + | chr5.4:21001501-21001520 | None:intergenic | 20.0% |
| !!! | CGTAGTTTTTAATAAAATGA+CGG | + | chr5.4:21002227-21002246 | None:intergenic | 20.0% |
| ! | AATCGAATGTAATAAATTCC+AGG | + | chr5.4:21002383-21002402 | None:intergenic | 25.0% |
| ! | TAGTAAGTTACAAGAAGAAA+TGG | - | chr5.4:21001793-21001812 | MS.gene027857:intron | 25.0% |
| ! | TTTCTTACCATTACTTCATT+TGG | + | chr5.4:21001872-21001891 | None:intergenic | 25.0% |
| !! | ACAAATCAGATAAACCTTTT+AGG | - | chr5.4:21001827-21001846 | MS.gene027857:intron | 25.0% |
| !! | ATTTTCATCAAATGAGTCAA+AGG | + | chr5.4:21000959-21000978 | None:intergenic | 25.0% |
| !! | TCTATAATTAATTTTTCGCC+TGG | - | chr5.4:21002362-21002381 | MS.gene027857:CDS | 25.0% |
| !!! | AAACCTTTTAGGAATTTCTA+AGG | - | chr5.4:21001838-21001857 | MS.gene027857:intron | 25.0% |
| AACCATGCAAACAATTATTG+AGG | + | chr5.4:21002490-21002509 | None:intergenic | 30.0% | |
| ACTCCTTAGAAATTCCTAAA+AGG | + | chr5.4:21001844-21001863 | None:intergenic | 30.0% | |
| AGAAAAAAGCCAAATCCAAA+AGG | - | chr5.4:21001265-21001284 | MS.gene027857:intron | 30.0% | |
| AGATAAAGCAATCACTATTC+AGG | - | chr5.4:21002595-21002614 | MS.gene027857:CDS | 30.0% | |
| ATTCAAGAGTTTGGATTTGT+TGG | - | chr5.4:21001147-21001166 | MS.gene027857:intron | 30.0% | |
| CATAAGGACATTCAAATCTA+TGG | + | chr5.4:21001038-21001057 | None:intergenic | 30.0% | |
| CATAGATTTGAATGTCCTTA+TGG | - | chr5.4:21001036-21001055 | MS.gene027857:intron | 30.0% | |
| CATATTATTCCCATGTGTTT+AGG | - | chr5.4:21002539-21002558 | MS.gene027857:CDS | 30.0% | |
| CATTCAAATCTATGGTCTAA+TGG | + | chr5.4:21001030-21001049 | None:intergenic | 30.0% | |
| GAAAAAAGCCAAATCCAAAA+GGG | - | chr5.4:21001266-21001285 | MS.gene027857:intron | 30.0% | |
| GATTATGCATTAAGTGTTCA+AGG | + | chr5.4:21001918-21001937 | None:intergenic | 30.0% | |
| GTTAAAGCCAAATGAAGTAA+TGG | - | chr5.4:21001862-21001881 | MS.gene027857:intron | 30.0% | |
| TAAAATCAGCTGCAAAATTG+AGG | - | chr5.4:21001197-21001216 | MS.gene027857:intron | 30.0% | |
| TAAGTTACAAGAAGAAATGG+AGG | - | chr5.4:21001796-21001815 | MS.gene027857:intron | 30.0% | |
| TTGAGAATGAAGCAAATGAA+GGG | + | chr5.4:21001005-21001024 | None:intergenic | 30.0% | |
| ! | CATAGTGTGTGTTCTAATTT+TGG | - | chr5.4:21001590-21001609 | MS.gene027857:intron | 30.0% |
| ! | GAAACTCCAGTTTTTAACAT+GGG | - | chr5.4:21001231-21001250 | MS.gene027857:intron | 30.0% |
| ! | GTAAATTTTGTAAGATGGAC+AGG | - | chr5.4:21001717-21001736 | MS.gene027857:CDS | 30.0% |
| ! | TGAAACTCCAGTTTTTAACA+TGG | - | chr5.4:21001230-21001249 | MS.gene027857:intron | 30.0% |
| ! | TTTTCAGTTTGATGTTGAGA+GGG | - | chr5.4:21001988-21002007 | MS.gene027857:intron | 30.0% |
| !! | TTTTTCAGTTTGATGTTGAG+AGG | - | chr5.4:21001987-21002006 | MS.gene027857:intron | 30.0% |
| AAGGAACTAAACCATACCTT+AGG | + | chr5.4:21001899-21001918 | None:intergenic | 35.0% | |
| AATGAGTTACTACTCCCTAA+TGG | - | chr5.4:21000928-21000947 | MS.gene027857:intron | 35.0% | |
| AATGGTAAGAAATTCCCCTA+AGG | - | chr5.4:21001880-21001899 | MS.gene027857:intron | 35.0% | |
| ACAGCCTTCAAAGAATCTTA+TGG | - | chr5.4:21001296-21001315 | MS.gene027857:intron | 35.0% | |
| ACATGGAATACTTTATCCAC+TGG | - | chr5.4:21000901-21000920 | MS.gene027857:CDS | 35.0% | |
| ACTGAGAATCCATCAAGATA+AGG | + | chr5.4:21001081-21001100 | None:intergenic | 35.0% | |
| AGAATCTTATGGCTGAAAGA+AGG | - | chr5.4:21001307-21001326 | MS.gene027857:intron | 35.0% | |
| AGGAACTAAACCATACCTTA+GGG | + | chr5.4:21001898-21001917 | None:intergenic | 35.0% | |
| AGTAAAACCCTAAGCATGTT+CGG | - | chr5.4:21002166-21002185 | MS.gene027857:CDS | 35.0% | |
| AGTGATTGCTTTATCTCTTC+AGG | + | chr5.4:21002591-21002610 | None:intergenic | 35.0% | |
| CACAAACCCATGTTAAAAAC+TGG | + | chr5.4:21001240-21001259 | None:intergenic | 35.0% | |
| CTGAGAATCCATCAAGATAA+GGG | + | chr5.4:21001080-21001099 | None:intergenic | 35.0% | |
| GCAAATGAAGGGTTTAAAGA+TGG | + | chr5.4:21000994-21001013 | None:intergenic | 35.0% | |
| GTGATTGCTTTATCTCTTCA+GGG | + | chr5.4:21002590-21002609 | None:intergenic | 35.0% | |
| GTTGAGAATGAAGCAAATGA+AGG | + | chr5.4:21001006-21001025 | None:intergenic | 35.0% | |
| TAAGAAATTCCCCTAAGGTA+TGG | - | chr5.4:21001885-21001904 | MS.gene027857:intron | 35.0% | |
| TAGTAACTCATTCAAACCAG+TGG | + | chr5.4:21000920-21000939 | None:intergenic | 35.0% | |
| TATCAATCCGAACATGCTTA+GGG | + | chr5.4:21002176-21002195 | None:intergenic | 35.0% | |
| TCAGCCATAAGATTCTTTGA+AGG | + | chr5.4:21001303-21001322 | None:intergenic | 35.0% | |
| TCATCATACCCTTATCTTGA+TGG | - | chr5.4:21001069-21001088 | MS.gene027857:intron | 35.0% | |
| TCTTGAATACCTTCTTGTTG+TGG | + | chr5.4:21001135-21001154 | None:intergenic | 35.0% | |
| TGAAACTGCTTATAACACAC+TGG | + | chr5.4:21002111-21002130 | None:intergenic | 35.0% | |
| TTTCAGTTTGATGTTGAGAG+GGG | - | chr5.4:21001989-21002008 | MS.gene027857:intron | 35.0% | |
| ! | AACTACGCTTTTGAGCTTTA+AGG | - | chr5.4:21002240-21002259 | MS.gene027857:CDS | 35.0% |
| ! | ACATGAAAGAGCTTCTAGAA+AGG | - | chr5.4:21001768-21001787 | MS.gene027857:intron | 35.0% |
| ! | CATTGACTAGCACTTGTATT+TGG | - | chr5.4:21001652-21001671 | MS.gene027857:CDS | 35.0% |
| ! | GTATTCCATGTGTCTTTTCT+TGG | + | chr5.4:21000892-21000911 | None:intergenic | 35.0% |
| ! | GTTTTTAACATGGGTTTGTG+TGG | - | chr5.4:21001240-21001259 | MS.gene027857:intron | 35.0% |
| !! | ACTACGCTTTTGAGCTTTAA+GGG | - | chr5.4:21002241-21002260 | MS.gene027857:CDS | 35.0% |
| !! | CAAGAAGGTATTCAAGAGTT+TGG | - | chr5.4:21001138-21001157 | MS.gene027857:intron | 35.0% |
| !! | GTGAACACATTAGAAGCATT+AGG | - | chr5.4:21002073-21002092 | MS.gene027857:intron | 35.0% |
| !! | TTCTCAACTTGGTTTTCTTG+AGG | - | chr5.4:21000855-21000874 | MS.gene027857:CDS | 35.0% |
| !!! | GAGGCGAATAGTCTTTTTTT+TGG | + | chr5.4:21002471-21002490 | None:intergenic | 35.0% |
| AATTGTCCCTAAGATCAGCA+AGG | - | chr5.4:21001371-21001390 | MS.gene027857:CDS | 40.0% | |
| ACTGTTGACAGTAACAATCC+TGG | + | chr5.4:21002055-21002074 | None:intergenic | 40.0% | |
| AGTCAAAGGTCCAACCATTA+GGG | + | chr5.4:21000945-21000964 | None:intergenic | 40.0% | |
| AGTTACTACTCCCTAATGGT+TGG | - | chr5.4:21000932-21000951 | MS.gene027857:intron | 40.0% | |
| ATGGACAGGACATCAATTCT+GGG | - | chr5.4:21001731-21001750 | MS.gene027857:CDS | 40.0% | |
| CAAGAAGAAATGGAGGAAGA+AGG | - | chr5.4:21001803-21001822 | MS.gene027857:intron | 40.0% | |
| CAATCACTATTCAGGAATGC+AGG | - | chr5.4:21002603-21002622 | MS.gene027857:CDS | 40.0% | |
| CGCCTCAATAATTGTTTGCA+TGG | - | chr5.4:21002485-21002504 | MS.gene027857:CDS | 40.0% | |
| CTATCAATCCGAACATGCTT+AGG | + | chr5.4:21002177-21002196 | None:intergenic | 40.0% | |
| CTATTCAGGAATGCAGGTTA+TGG | - | chr5.4:21002609-21002628 | MS.gene027857:CDS | 40.0% | |
| GAATCACCTTGCTGATCTTA+GGG | + | chr5.4:21001380-21001399 | None:intergenic | 40.0% | |
| GACCATCTACCTAAACACAT+GGG | + | chr5.4:21002551-21002570 | None:intergenic | 40.0% | |
| GATGATGCATCAGTTCCATA+AGG | + | chr5.4:21001054-21001073 | None:intergenic | 40.0% | |
| GGAACTAAACCATACCTTAG+GGG | + | chr5.4:21001897-21001916 | None:intergenic | 40.0% | |
| TAACACACTGGTGAATCTCA+AGG | + | chr5.4:21002099-21002118 | None:intergenic | 40.0% | |
| TAGCTCCAAGAAAAGACACA+TGG | - | chr5.4:21000884-21000903 | MS.gene027857:CDS | 40.0% | |
| TGAATCACCTTGCTGATCTT+AGG | + | chr5.4:21001381-21001400 | None:intergenic | 40.0% | |
| TGACCATCTACCTAAACACA+TGG | + | chr5.4:21002552-21002571 | None:intergenic | 40.0% | |
| TTCCCATGTGTTTAGGTAGA+TGG | - | chr5.4:21002546-21002565 | MS.gene027857:CDS | 40.0% | |
| TTGTTGGAAGTGAGAACAAG+AGG | - | chr5.4:21001163-21001182 | MS.gene027857:intron | 40.0% | |
| ! | CCAGTTTTACCACAACAAGA+AGG | - | chr5.4:21001123-21001142 | MS.gene027857:intron | 40.0% |
| ! | CCTTCTTGTTGTGGTAAAAC+TGG | + | chr5.4:21001126-21001145 | None:intergenic | 40.0% |
| ! | TCCTTCAACCCTTTTGGATT+TGG | + | chr5.4:21001277-21001296 | None:intergenic | 40.0% |
| !! | GAAGAAAGCGTTTGAATGAC+AGG | - | chr5.4:21001331-21001350 | MS.gene027857:intron | 40.0% |
| AGGGACAATTGACCTAAGCA+TGG | + | chr5.4:21001361-21001380 | None:intergenic | 45.0% | |
| ATGACAGGCTTTCCATGCTT+AGG | - | chr5.4:21001346-21001365 | MS.gene027857:CDS | 45.0% | |
| ATTGCAAGCATCTTGCTCAG+AGG | - | chr5.4:21002141-21002160 | MS.gene027857:CDS | 45.0% | |
| GAGTCAAAGGTCCAACCATT+AGG | + | chr5.4:21000946-21000965 | None:intergenic | 45.0% | |
| GATGGACAGGACATCAATTC+TGG | - | chr5.4:21001730-21001749 | MS.gene027857:CDS | 45.0% | |
| GCCAAATCCAAAAGGGTTGA+AGG | - | chr5.4:21001273-21001292 | MS.gene027857:intron | 45.0% | |
| TCAGGAATGCAGGTTATGGT+GGG | - | chr5.4:21002613-21002632 | MS.gene027857:CDS | 45.0% | |
| TCGAGTATCAGTGTTGTGTC+TGG | - | chr5.4:21001551-21001570 | MS.gene027857:intron | 45.0% | |
| TTCAGGAATGCAGGTTATGG+TGG | - | chr5.4:21002612-21002631 | MS.gene027857:CDS | 45.0% | |
| ! | GGTGCTGAATCATCAAACTC+AGG | + | chr5.4:21001105-21001124 | None:intergenic | 45.0% |
| !! | AGATGCTGATTCTTGTGTCC+TGG | + | chr5.4:21002018-21002037 | None:intergenic | 45.0% |
| !! | CAGTAACAATCCTGGCTTTG+TGG | + | chr5.4:21002047-21002066 | None:intergenic | 45.0% |
| ! | AGGCTGTCCTTCAACCCTTT+TGG | + | chr5.4:21001283-21001302 | None:intergenic | 50.0% |
| ATCTGCTGTGCCACAAAGCC+AGG | - | chr5.4:21002034-21002053 | MS.gene027857:intron | 55.0% | |
| TGATGTTGAGAGGGGAGACC+AGG | - | chr5.4:21001997-21002016 | MS.gene027857:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 21000847 | 21002647 | 21000847 | ID=MS.gene027857 |
| chr5.4 | mRNA | 21000847 | 21002647 | 21000847 | ID=MS.gene027857.t1;Parent=MS.gene027857 |
| chr5.4 | exon | 21002102 | 21002647 | 21002102 | ID=MS.gene027857.t1.exon1;Parent=MS.gene027857.t1 |
| chr5.4 | CDS | 21002102 | 21002647 | 21002102 | ID=cds.MS.gene027857.t1;Parent=MS.gene027857.t1 |
| chr5.4 | exon | 21001593 | 21001763 | 21001593 | ID=MS.gene027857.t1.exon2;Parent=MS.gene027857.t1 |
| chr5.4 | CDS | 21001593 | 21001763 | 21001593 | ID=cds.MS.gene027857.t1;Parent=MS.gene027857.t1 |
| chr5.4 | exon | 21001332 | 21001499 | 21001332 | ID=MS.gene027857.t1.exon3;Parent=MS.gene027857.t1 |
| chr5.4 | CDS | 21001332 | 21001499 | 21001332 | ID=cds.MS.gene027857.t1;Parent=MS.gene027857.t1 |
| chr5.4 | exon | 21000847 | 21000933 | 21000847 | ID=MS.gene027857.t1.exon4;Parent=MS.gene027857.t1 |
| chr5.4 | CDS | 21000847 | 21000933 | 21000847 | ID=cds.MS.gene027857.t1;Parent=MS.gene027857.t1 |
| Gene Sequence |
| Protein sequence |
