AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene02791

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene02791.t1 MTR_6g051425 28.743 334 200 8 38 343 1 324 4.68e-33 130
MS.gene02791.t1 MTR_4g067290 35.644 101 62 1 64 161 56 156 1.58e-14 73.9
MS.gene02791.t1 MTR_4g067290 35.644 101 62 1 64 161 56 156 1.58e-14 73.9
MS.gene02791.t1 MTR_4g067290 35.644 101 62 1 64 161 76 176 2.01e-14 74.3
MS.gene02791.t1 MTR_4g067290 35.644 101 62 1 64 161 74 174 2.03e-14 74.3
MS.gene02791.t1 MTR_4g067290 35.644 101 62 1 64 161 76 176 2.04e-14 74.3
MS.gene02791.t1 MTR_4g067290 35.644 101 62 1 64 161 116 216 4.45e-14 73.9
MS.gene02791.t1 MTR_2g098880 36.792 106 57 2 64 161 61 164 5.73e-13 69.7
MS.gene02791.t1 MTR_2g098880 36.792 106 57 2 64 161 73 176 6.37e-13 70.1
MS.gene02791.t1 MTR_2g098920 35.644 101 62 1 64 161 80 180 6.73e-13 69.7
MS.gene02791.t1 MTR_7g446520 26.160 237 157 6 68 299 92 315 1.14e-11 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene02791.t1 AT1G52520 63.116 629 219 6 58 681 79 699 0.0 855
MS.gene02791.t1 AT1G80010 47.476 634 312 9 62 680 93 720 0.0 582
MS.gene02791.t1 AT4G15090 33.968 630 397 8 64 684 51 670 1.65e-121 382
MS.gene02791.t1 AT4G15090 33.968 630 397 8 64 684 51 670 1.65e-121 382
MS.gene02791.t1 AT4G15090 33.968 630 397 8 64 684 51 670 1.65e-121 382
MS.gene02791.t1 AT4G15090 33.968 630 397 8 64 684 51 670 1.65e-121 382
MS.gene02791.t1 AT4G15090 33.968 630 397 8 64 684 51 670 1.65e-121 382
MS.gene02791.t1 AT3G22170 33.333 681 387 11 20 674 29 668 2.45e-117 371
MS.gene02791.t1 AT3G22170 33.333 681 387 11 20 674 29 668 2.45e-117 371
MS.gene02791.t1 AT1G76320 35.135 629 356 13 68 676 1 597 7.52e-110 347
MS.gene02791.t1 AT1G76320 35.135 629 356 13 68 676 1 597 2.55e-109 347
MS.gene02791.t1 AT1G76320 35.135 629 356 13 68 676 1 597 2.82e-109 347
MS.gene02791.t1 AT1G76320 35.135 629 356 13 68 676 1 597 2.82e-109 347
MS.gene02791.t1 AT4G19990 34.272 604 332 9 38 621 1 559 1.16e-102 330
MS.gene02791.t1 AT4G19990 34.272 604 332 9 38 621 1 559 1.16e-102 330
MS.gene02791.t1 AT4G19990 34.272 604 332 9 38 621 1 559 2.43e-102 329
MS.gene02791.t1 AT4G19990 34.272 604 332 9 38 621 1 559 2.57e-102 330
MS.gene02791.t1 AT4G19990 34.272 604 332 9 38 621 1 559 2.57e-102 330
MS.gene02791.t1 AT4G19990 34.443 601 329 9 41 621 18 573 3.62e-102 329
MS.gene02791.t1 AT4G38180 33.391 578 361 11 64 627 73 640 2.79e-100 325
MS.gene02791.t1 AT4G19990 35.673 513 287 7 114 621 28 502 8.13e-94 305
MS.gene02791.t1 AT2G27110 29.781 638 408 12 48 681 38 639 3.22e-91 302
MS.gene02791.t1 AT2G27110 29.781 638 408 12 48 681 38 639 3.22e-91 302
MS.gene02791.t1 AT3G06250 30.189 636 385 13 50 677 176 760 3.00e-89 295
MS.gene02791.t1 AT3G06250 32.692 104 61 1 64 167 28 122 2.35e-11 67.8
MS.gene02791.t1 AT3G06250 30.189 636 385 13 50 677 176 760 3.00e-89 295
MS.gene02791.t1 AT3G06250 32.692 104 61 1 64 167 28 122 2.35e-11 67.8
MS.gene02791.t1 AT3G06250 30.189 636 385 13 50 677 176 760 3.00e-89 295
MS.gene02791.t1 AT3G06250 32.692 104 61 1 64 167 28 122 2.35e-11 67.8
MS.gene02791.t1 AT5G18960 31.018 619 377 15 64 677 211 784 3.55e-87 290
MS.gene02791.t1 AT5G18960 31.018 619 377 15 64 677 211 784 3.55e-87 290
MS.gene02791.t1 AT2G27110 31.172 478 317 5 206 681 27 494 8.01e-82 274
MS.gene02791.t1 AT2G32250 38.421 380 223 5 241 618 180 550 4.72e-78 265
MS.gene02791.t1 AT2G32250 38.421 380 223 5 241 618 139 509 6.20e-78 265
MS.gene02791.t1 AT2G32250 38.421 380 223 5 241 618 139 509 7.42e-78 265
MS.gene02791.t1 AT2G32250 38.421 380 223 5 241 618 180 550 9.71e-78 265
MS.gene02791.t1 AT2G32250 38.421 380 223 5 241 618 180 550 9.71e-78 265
MS.gene02791.t1 AT2G32250 38.421 380 223 5 241 618 180 550 9.71e-78 265
MS.gene02791.t1 AT2G32250 38.421 380 223 5 241 618 180 550 9.98e-78 265
MS.gene02791.t1 AT2G32250 38.421 380 223 5 241 618 180 550 9.98e-78 265
MS.gene02791.t1 AT4G38170 31.180 449 291 8 234 677 21 456 3.13e-72 244
MS.gene02791.t1 AT1G10240 25.966 647 415 16 64 679 48 661 1.22e-54 199
MS.gene02791.t1 AT1G10240 25.966 647 415 16 64 679 48 661 1.22e-54 199
MS.gene02791.t1 AT5G28530 26.121 647 425 18 63 680 54 676 2.01e-47 178
MS.gene02791.t1 AT5G28530 25.966 647 422 18 63 680 54 672 7.18e-47 177
MS.gene02791.t1 AT5G28530 25.966 647 422 18 63 680 54 672 7.18e-47 177
MS.gene02791.t1 AT5G28530 28.312 385 246 11 303 680 252 613 1.12e-30 128
MS.gene02791.t1 AT5G28530 28.052 385 243 11 303 680 252 609 4.57e-30 126
MS.gene02791.t1 AT3G59470 37.624 101 60 1 64 161 70 170 2.92e-14 73.6
MS.gene02791.t1 AT3G59470 37.624 101 60 1 64 161 70 170 2.92e-14 73.6
MS.gene02791.t1 AT3G59470 37.624 101 60 1 64 161 82 182 3.42e-14 73.6

Find 118 sgRNAs with CRISPR-Local

Find 160 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GACATTTGAGGAATGTATTA+TGG 0.176053 2.4:+60699446 MS.gene02791:CDS
CATGGTCAATCTGTGTTATT+AGG 0.198497 2.4:+60699586 MS.gene02791:CDS
CGTCGACGGTGTCAAGCTTT+TGG 0.198914 2.4:-60698427 None:intergenic
CCCAGATCTCATCATTGTTT+TGG 0.201438 2.4:+60699751 MS.gene02791:CDS
CAATGGTCTAATCAGTTATT+TGG 0.205211 2.4:+60700591 MS.gene02791:CDS
GAAGAAATGTTCTCTTGTTT+TGG 0.291820 2.4:+60700258 MS.gene02791:CDS
TCCATCAAATAAAAGAAGTT+TGG 0.301368 2.4:-60699409 None:intergenic
AACTTGTCCTTTATGTATAC+TGG 0.304465 2.4:-60699979 None:intergenic
GAATTTCCCGCACCTGCTAT+TGG 0.315659 2.4:+60698851 MS.gene02791:CDS
CTGCAGTTCAAAAGAGCATT+TGG 0.320519 2.4:-60700184 None:intergenic
ACGACATAGGAAATTATAAA+TGG 0.326434 2.4:-60699371 None:intergenic
TTAGGTTGTGGGTTGCTTGC+AGG 0.332899 2.4:+60699604 MS.gene02791:CDS
TACATAAAGGACAAGTTTCT+TGG 0.335040 2.4:+60699985 MS.gene02791:CDS
AATGAACTCGGTCTTCATAT+AGG 0.339160 2.4:-60699951 None:intergenic
TGGAAGTGCCTTACAAGTTA+TGG 0.355565 2.4:+60700611 MS.gene02791:CDS
TGGCTCCATCATAATCTTCT+TGG 0.357834 2.4:+60700302 MS.gene02791:CDS
CACACAAAATCCCACCTCTT+TGG 0.362616 2.4:-60698924 None:intergenic
CATGGCAGGACAACCAGTTC+TGG 0.364832 2.4:-60699062 None:intergenic
CTCGAACATAACCACGTCTT+AGG 0.365078 2.4:+60699136 MS.gene02791:CDS
ACATTTGAGGAATGTATTAT+GGG 0.365589 2.4:+60699447 MS.gene02791:CDS
GCCAAAACAATGATGAGATC+TGG 0.365658 2.4:-60699752 None:intergenic
ATGAACTCGGTCTTCATATA+GGG 0.370282 2.4:-60699950 None:intergenic
TTCTCCTCAAACTATTATTA+CGG 0.379468 2.4:+60699687 MS.gene02791:CDS
CAATCTGTGTTATTAGGTTG+TGG 0.392493 2.4:+60699592 MS.gene02791:CDS
ATTGAAAGTGATTGAATTTG+AGG 0.404070 2.4:+60699870 MS.gene02791:CDS
GTTCAGACATACACCTTTGA+AGG 0.415617 2.4:+60700065 MS.gene02791:CDS
TTGATGGATTTCAATGATGA+AGG 0.429652 2.4:+60699424 MS.gene02791:CDS
ACATGGGTTACTTGTATGTC+AGG 0.436090 2.4:+60699661 MS.gene02791:CDS
ATTACCAGGCATTCTCCATC+GGG 0.447050 2.4:-60698788 None:intergenic
AAAATAACGACATGCAGCTT+TGG 0.449608 2.4:-60699482 None:intergenic
AATCTGTGTTATTAGGTTGT+GGG 0.451302 2.4:+60699593 MS.gene02791:CDS
TATATGAAGACCGAGTTCAT+TGG 0.452679 2.4:+60699953 MS.gene02791:CDS
GATTGAATTTGAGGCGGCAT+GGG 0.459082 2.4:+60699879 MS.gene02791:CDS
AGTTGTGATCAGGAATATAA+AGG 0.460169 2.4:-60700539 None:intergenic
CATGATAAGGATTAAGTTAG+TGG 0.463158 2.4:+60699081 MS.gene02791:CDS
TTGAGAAAAGAAACCAGAAC+TGG 0.466660 2.4:+60699049 MS.gene02791:CDS
ATATGAAGACCGAGTTCATT+GGG 0.473754 2.4:+60699954 MS.gene02791:CDS
AGCTCTGTCATCTGTTGCAT+TGG 0.476249 2.4:-60699299 None:intergenic
TTCTGCAATTGCACTTTGCA+AGG 0.480040 2.4:-60699722 None:intergenic
CTGGTTGTCCTGCCATGATA+AGG 0.483669 2.4:+60699068 MS.gene02791:CDS
CCAAAACAATGATGAGATCT+GGG 0.492319 2.4:-60699751 None:intergenic
GTGCTTTGTTGTAGCAGTCA+AGG 0.493576 2.4:+60698998 MS.gene02791:CDS
TCCCTCCTCCATAACTTGTA+AGG 0.494681 2.4:-60700619 None:intergenic
AAACGACCGAATCGTATTCA+TGG 0.494788 2.4:+60699629 MS.gene02791:CDS
TTTGACCAAGAAGATTATGA+TGG 0.497729 2.4:-60700307 None:intergenic
GAACTACCAGAGTTGTGATC+AGG 0.499730 2.4:-60700549 None:intergenic
TGTTCTTGTTCTTCTTCTTG+AGG 0.500286 2.4:-60698461 None:intergenic
ATGTATTATGGGTTGATGCC+AGG 0.501404 2.4:+60699458 MS.gene02791:CDS
TTTGATTGAGGGAAACAGAC+AGG 0.503735 2.4:+60700338 MS.gene02791:CDS
CATGAAGTTCCAACTTGAAG+TGG 0.504481 2.4:+60700236 MS.gene02791:CDS
GGACAAGTTTCTTGGTGGAA+TGG 0.506245 2.4:+60699993 MS.gene02791:CDS
TTGGGCACCAGTATACATAA+AGG 0.506630 2.4:+60699972 MS.gene02791:CDS
AATTACCAGGCATTCTCCAT+CGG 0.509978 2.4:-60698789 None:intergenic
AATAAGTTGAACCTAAGAAA+AGG 0.515686 2.4:+60699337 MS.gene02791:CDS
TGATTGAATTTGAGGCGGCA+TGG 0.516224 2.4:+60699878 MS.gene02791:CDS
ACATTTCTTCCACTTCAAGT+TGG 0.516480 2.4:-60700245 None:intergenic
AACTTAATCCTTATCATGGC+AGG 0.517948 2.4:-60699076 None:intergenic
TCCCGCACCTGCTATTGGAA+TGG 0.519960 2.4:+60698856 MS.gene02791:CDS
ACTGACGCGCTGCATCGTAA+TGG 0.520691 2.4:-60700656 None:intergenic
TTCATGGTTGTTTAGAACAT+GGG 0.523651 2.4:+60699645 MS.gene02791:CDS
GGGAAACAGACAGGAGATCA+AGG 0.525712 2.4:+60700347 MS.gene02791:CDS
GTTGCCTAGCTCTGATGCGG+AGG 0.527630 2.4:+60699213 MS.gene02791:CDS
ATGATATTGAACGTATTCAA+TGG 0.532271 2.4:+60700574 MS.gene02791:CDS
ATTCATGGTTGTTTAGAACA+TGG 0.534938 2.4:+60699644 MS.gene02791:CDS
TCCATTCCAATAGCAGGTGC+GGG 0.535063 2.4:-60698857 None:intergenic
TCAAATTCCATTCCAATAGC+AGG 0.535321 2.4:-60698863 None:intergenic
ATAAAGGACAAGTTTCTTGG+TGG 0.535782 2.4:+60699988 MS.gene02791:CDS
CACTAACTTAATCCTTATCA+TGG 0.537066 2.4:-60699080 None:intergenic
ATTACCCGATGGAGAATGCC+TGG 0.537097 2.4:+60698784 MS.gene02791:CDS
GTGATAGATACAGAAGGTAA+TGG 0.538353 2.4:+60699265 MS.gene02791:CDS
TTGCCTAGCTCTGATGCGGA+GGG 0.538891 2.4:+60699214 MS.gene02791:CDS
AAAGGACTAATGCTCTCACT+AGG 0.539421 2.4:-60700027 None:intergenic
TATATTCCTGATCACAACTC+TGG 0.540777 2.4:+60700543 MS.gene02791:CDS
TTCCATTCCAATAGCAGGTG+CGG 0.542397 2.4:-60698858 None:intergenic
TGCCTTACAAGTTATGGAGG+AGG 0.551483 2.4:+60700617 MS.gene02791:CDS
TGTCAAGATGATATTTCTGA+AGG 0.552931 2.4:+60698821 MS.gene02791:CDS
AAACAACCATGAATACGATT+CGG 0.553116 2.4:-60699635 None:intergenic
ACGACATGCAGCTTTGGACC+TGG 0.553268 2.4:-60699476 None:intergenic
TTCCCCTCCGCATCAGAGCT+AGG 0.562167 2.4:-60699217 None:intergenic
TCAATGATGAAGGACATTTG+AGG 0.564984 2.4:+60699434 MS.gene02791:CDS
ATTTGCTATGCCAAAGAGGT+GGG 0.566055 2.4:+60698914 MS.gene02791:CDS
ATCTCTTTATAAGAAGTACA+AGG 0.566116 2.4:+60700110 MS.gene02791:CDS
ACCACTCAACTACGTGCAGA+TGG 0.567203 2.4:+60700282 MS.gene02791:CDS
AGTTAGTGGAGTCTCAGAGA+TGG 0.573080 2.4:+60699095 MS.gene02791:CDS
TAGTTAGCTGCATACGACAT+AGG 0.573239 2.4:-60699384 None:intergenic
AGGTTGAGACTCGCCGTCGA+CGG 0.574630 2.4:-60698441 None:intergenic
TATTTGCTATGCCAAAGAGG+TGG 0.575475 2.4:+60698913 MS.gene02791:CDS
ATTCCAACAAAAGTCACAAG+AGG 0.580554 2.4:-60699556 None:intergenic
CTATCCGTAATAATAGTTTG+AGG 0.582240 2.4:-60699691 None:intergenic
TTGTCAAGAAAATCCTTCAA+AGG 0.587595 2.4:-60700078 None:intergenic
TAGTGGAGTCTCAGAGATGG+AGG 0.590281 2.4:+60699098 MS.gene02791:CDS
GCCTTACAAGTTATGGAGGA+GGG 0.592013 2.4:+60700618 MS.gene02791:CDS
GACAATCTAATTCAATTACC+AGG 0.596609 2.4:-60698802 None:intergenic
CACCGTGATAGAATGTACTT+AGG 0.598150 2.4:-60700498 None:intergenic
CGTGATAGAATGTACTTAGG+AGG 0.599389 2.4:-60700495 None:intergenic
ATACTGGTGCCCAATGAACT+CGG 0.607374 2.4:-60699963 None:intergenic
ATTGAATTTGAGGCGGCATG+GGG 0.607914 2.4:+60699880 MS.gene02791:CDS
TTATATTTGCTATGCCAAAG+AGG 0.610702 2.4:+60698910 MS.gene02791:CDS
CTCGTTGCCTAGCTCTGATG+CGG 0.616476 2.4:+60699210 MS.gene02791:CDS
GCCATCTGCACGTAGTTGAG+TGG 0.627400 2.4:-60700283 None:intergenic
TGCCTAGCTCTGATGCGGAG+GGG 0.628559 2.4:+60699215 MS.gene02791:CDS
CTCCTAAGTACATTCTATCA+CGG 0.629356 2.4:+60700496 MS.gene02791:CDS
AAGGACTAATGCTCTCACTA+GGG 0.629524 2.4:-60700026 None:intergenic
TTCATGATGTAAAACTTGAG+AGG 0.630957 2.4:+60700703 MS.gene02791:CDS
CAAAAGCTTGACACCGTCGA+CGG 0.630980 2.4:+60698428 MS.gene02791:CDS
AAGTGCCTTACAAGTTATGG+AGG 0.637921 2.4:+60700614 MS.gene02791:CDS
GTATCTTAGCACCTAAGACG+TGG 0.639364 2.4:-60699147 None:intergenic
TTTGTTGGAATAAATCACCA+TGG 0.640231 2.4:+60699568 MS.gene02791:CDS
AGAAGAACAAGAACACCCAA+AGG 0.641728 2.4:+60698469 MS.gene02791:CDS
CTCAAACTATTATTACGGAT+AGG 0.645642 2.4:+60699692 MS.gene02791:CDS
GAAAGTGATTGAATTTGAGG+CGG 0.650309 2.4:+60699873 MS.gene02791:CDS
TTGAAGTTAGGGATAACGAG+TGG 0.652213 2.4:+60699920 MS.gene02791:CDS
CTAATAACACAGATTGACCA+TGG 0.669427 2.4:-60699585 None:intergenic
GCACTTGTGATAGATACAGA+AGG 0.672329 2.4:+60699259 MS.gene02791:CDS
TAAAGCAAGAACAAATACAA+CGG 0.685448 2.4:-60700407 None:intergenic
TCAGAGATGGAGGATATGTG+AGG 0.701673 2.4:+60699108 MS.gene02791:CDS
TGTTGTGATCAATTACCCGA+TGG 0.706322 2.4:+60698773 MS.gene02791:CDS
CTAAGTACATTCTATCACGG+TGG 0.712046 2.4:+60700499 MS.gene02791:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACATAAATTAGTTAAAAAGA+TGG + chr2.4:60699168-60699187 MS.gene02791:CDS 15.0%
!! ATGAAAAATTAATTACCTTT+GGG - chr2.4:60698487-60698506 None:intergenic 15.0%
!! TATGAAAAATTAATTACCTT+TGG - chr2.4:60698488-60698507 None:intergenic 15.0%
!! AACATGTATTTATCGAAAAA+AGG - chr2.4:60700048-60700067 None:intergenic 20.0%
!!! ATTTTTATGGATATCTATGT+CGG + chr2.4:60700430-60700449 MS.gene02791:CDS 20.0%
!!! TGTTCTTGCTTTAATTTTTA+TGG + chr2.4:60700417-60700436 MS.gene02791:CDS 20.0%
!!! TTTTGAAGAATCACTTAATA+AGG + chr2.4:60700680-60700699 MS.gene02791:CDS 20.0%
! ACATTTGAGGAATGTATTAT+GGG + chr2.4:60699447-60699466 MS.gene02791:CDS 25.0%
! ACGACATAGGAAATTATAAA+TGG - chr2.4:60699374-60699393 None:intergenic 25.0%
! ATGATATTGAACGTATTCAA+TGG + chr2.4:60700574-60700593 MS.gene02791:CDS 25.0%
! ATTGAAAGTGATTGAATTTG+AGG + chr2.4:60699870-60699889 MS.gene02791:CDS 25.0%
! CGAAATAGCAAAGAAAAATA+TGG + chr2.4:60698971-60698990 MS.gene02791:CDS 25.0%
! CGTATCTAACTTATTTCAAA+TGG - chr2.4:60698581-60698600 None:intergenic 25.0%
! TAAAGCAAGAACAAATACAA+CGG - chr2.4:60700410-60700429 None:intergenic 25.0%
! TCCATCAAATAAAAGAAGTT+TGG - chr2.4:60699412-60699431 None:intergenic 25.0%
! TTCTCCTCAAACTATTATTA+CGG + chr2.4:60699687-60699706 MS.gene02791:CDS 25.0%
!! AATAAGTTGAACCTAAGAAA+AGG + chr2.4:60699337-60699356 MS.gene02791:CDS 25.0%
!! ATCTCTTTATAAGAAGTACA+AGG + chr2.4:60700110-60700129 MS.gene02791:CDS 25.0%
!!! AAAAAAGTACCAGAAAAACT+TGG + chr2.4:60699790-60699809 MS.gene02791:CDS 25.0%
!!! GATTCAACATTTTGAAGTTA+GGG + chr2.4:60699909-60699928 MS.gene02791:CDS 25.0%
!!! TCCAAACTTCTTTTATTTGA+TGG + chr2.4:60699408-60699427 MS.gene02791:CDS 25.0%
!!! TGATTCAACATTTTGAAGTT+AGG + chr2.4:60699908-60699927 MS.gene02791:CDS 25.0%
!!! TGTGTGTACTCAATTTTAAT+GGG + chr2.4:60700460-60700479 MS.gene02791:CDS 25.0%
AAACAACCATGAATACGATT+CGG - chr2.4:60699638-60699657 None:intergenic 30.0%
AACTTGTCCTTTATGTATAC+TGG - chr2.4:60699982-60700001 None:intergenic 30.0%
AGTTGTGATCAGGAATATAA+AGG - chr2.4:60700542-60700561 None:intergenic 30.0%
CAATGGTCTAATCAGTTATT+TGG + chr2.4:60700591-60700610 MS.gene02791:CDS 30.0%
CACTAACTTAATCCTTATCA+TGG - chr2.4:60699083-60699102 None:intergenic 30.0%
CATGATAAGGATTAAGTTAG+TGG + chr2.4:60699081-60699100 MS.gene02791:CDS 30.0%
CTATCCGTAATAATAGTTTG+AGG - chr2.4:60699694-60699713 None:intergenic 30.0%
CTCAAACTATTATTACGGAT+AGG + chr2.4:60699692-60699711 MS.gene02791:CDS 30.0%
GACAATCTAATTCAATTACC+AGG - chr2.4:60698805-60698824 None:intergenic 30.0%
GACATTTGAGGAATGTATTA+TGG + chr2.4:60699446-60699465 MS.gene02791:CDS 30.0%
TACATAAAGGACAAGTTTCT+TGG + chr2.4:60699985-60700004 MS.gene02791:CDS 30.0%
TTAGTTAAAAAGATGGCAAG+TGG + chr2.4:60699175-60699194 MS.gene02791:CDS 30.0%
TTATGAATTACCGTAGATCT+TGG - chr2.4:60698531-60698550 None:intergenic 30.0%
TTCATGATGTAAAACTTGAG+AGG + chr2.4:60700703-60700722 MS.gene02791:CDS 30.0%
TTGTCAAGAAAATCCTTCAA+AGG - chr2.4:60700081-60700100 None:intergenic 30.0%
TTTGACCAAGAAGATTATGA+TGG - chr2.4:60700310-60700329 None:intergenic 30.0%
TTTGTTGGAATAAATCACCA+TGG + chr2.4:60699568-60699587 MS.gene02791:CDS 30.0%
! AATCTGTGTTATTAGGTTGT+GGG + chr2.4:60699593-60699612 MS.gene02791:CDS 30.0%
! ATTCATGGTTGTTTAGAACA+TGG + chr2.4:60699644-60699663 MS.gene02791:CDS 30.0%
! CTGTGTGTACTCAATTTTAA+TGG + chr2.4:60700459-60700478 MS.gene02791:CDS 30.0%
! GTCAATTTAGATTTTGCGTT+AGG + chr2.4:60698681-60698700 MS.gene02791:intron 30.0%
! TGTCAAGATGATATTTCTGA+AGG + chr2.4:60698821-60698840 MS.gene02791:CDS 30.0%
! TTCATGGTTGTTTAGAACAT+GGG + chr2.4:60699645-60699664 MS.gene02791:CDS 30.0%
!! ATTTTGTTTGACGATATGCT+AGG + chr2.4:60698733-60698752 MS.gene02791:intron 30.0%
!! GAAGAAATGTTCTCTTGTTT+TGG + chr2.4:60700258-60700277 MS.gene02791:CDS 30.0%
!! GTGTGTACTCAATTTTAATG+GGG + chr2.4:60700461-60700480 MS.gene02791:CDS 30.0%
!! TTATATTTGCTATGCCAAAG+AGG + chr2.4:60698910-60698929 MS.gene02791:CDS 30.0%
!! TTGATGGATTTCAATGATGA+AGG + chr2.4:60699424-60699443 MS.gene02791:CDS 30.0%
AAAATAACGACATGCAGCTT+TGG - chr2.4:60699485-60699504 None:intergenic 35.0%
AACTTAATCCTTATCATGGC+AGG - chr2.4:60699079-60699098 None:intergenic 35.0%
AAGTACCAGAAAAACTTGGA+GGG + chr2.4:60699794-60699813 MS.gene02791:CDS 35.0%
AATGAACTCGGTCTTCATAT+AGG - chr2.4:60699954-60699973 None:intergenic 35.0%
ACATTTCTTCCACTTCAAGT+TGG - chr2.4:60700248-60700267 None:intergenic 35.0%
ATAAAGGACAAGTTTCTTGG+TGG + chr2.4:60699988-60700007 MS.gene02791:CDS 35.0%
ATATGAAGACCGAGTTCATT+GGG + chr2.4:60699954-60699973 MS.gene02791:CDS 35.0%
ATGAACTCGGTCTTCATATA+GGG - chr2.4:60699953-60699972 None:intergenic 35.0%
ATTCCAACAAAAGTCACAAG+AGG - chr2.4:60699559-60699578 None:intergenic 35.0%
CCAAAACAATGATGAGATCT+GGG - chr2.4:60699754-60699773 None:intergenic 35.0%
CTAATAACACAGATTGACCA+TGG - chr2.4:60699588-60699607 None:intergenic 35.0%
CTCCTAAGTACATTCTATCA+CGG + chr2.4:60700496-60700515 MS.gene02791:CDS 35.0%
GAAAGTGATTGAATTTGAGG+CGG + chr2.4:60699873-60699892 MS.gene02791:CDS 35.0%
GTGATAGATACAGAAGGTAA+TGG + chr2.4:60699265-60699284 MS.gene02791:CDS 35.0%
TATATGAAGACCGAGTTCAT+TGG + chr2.4:60699953-60699972 MS.gene02791:CDS 35.0%
TATATTCCTGATCACAACTC+TGG + chr2.4:60700543-60700562 MS.gene02791:CDS 35.0%
TCAAATTCCATTCCAATAGC+AGG - chr2.4:60698866-60698885 None:intergenic 35.0%
TCAATGATGAAGGACATTTG+AGG + chr2.4:60699434-60699453 MS.gene02791:CDS 35.0%
TGTTCTTGTTCTTCTTCTTG+AGG - chr2.4:60698464-60698483 None:intergenic 35.0%
TTGAGAAAAGAAACCAGAAC+TGG + chr2.4:60699049-60699068 MS.gene02791:CDS 35.0%
! AAAGTACCAGAAAAACTTGG+AGG + chr2.4:60699793-60699812 MS.gene02791:CDS 35.0%
! ATTCCTCTTGTGACTTTTGT+TGG + chr2.4:60699553-60699572 MS.gene02791:CDS 35.0%
! CAATCTGTGTTATTAGGTTG+TGG + chr2.4:60699592-60699611 MS.gene02791:CDS 35.0%
! CATGGTCAATCTGTGTTATT+AGG + chr2.4:60699586-60699605 MS.gene02791:CDS 35.0%
!! TGTACTCAATTTTAATGGGG+TGG + chr2.4:60700464-60700483 MS.gene02791:CDS 35.0%
!!! AAAGAGCGTGTTTTGATTGA+GGG + chr2.4:60700327-60700346 MS.gene02791:CDS 35.0%
AAACGACCGAATCGTATTCA+TGG + chr2.4:60699629-60699648 MS.gene02791:CDS 40.0%
AAAGGACTAATGCTCTCACT+AGG - chr2.4:60700030-60700049 None:intergenic 40.0%
AAGGACTAATGCTCTCACTA+GGG - chr2.4:60700029-60700048 None:intergenic 40.0%
AAGTGCCTTACAAGTTATGG+AGG + chr2.4:60700614-60700633 MS.gene02791:CDS 40.0%
AATTACCAGGCATTCTCCAT+CGG - chr2.4:60698792-60698811 None:intergenic 40.0%
AGAAGAACAAGAACACCCAA+AGG + chr2.4:60698469-60698488 MS.gene02791:CDS 40.0%
CACCGTGATAGAATGTACTT+AGG - chr2.4:60700501-60700520 None:intergenic 40.0%
CATGAAGTTCCAACTTGAAG+TGG + chr2.4:60700236-60700255 MS.gene02791:CDS 40.0%
CGTGATAGAATGTACTTAGG+AGG - chr2.4:60700498-60700517 None:intergenic 40.0%
CTAAGTACATTCTATCACGG+TGG + chr2.4:60700499-60700518 MS.gene02791:CDS 40.0%
GACATTAAATTTCGCTACCC+AGG - chr2.4:60698664-60698683 None:intergenic 40.0%
GCACTTGTGATAGATACAGA+AGG + chr2.4:60699259-60699278 MS.gene02791:CDS 40.0%
GCCAAAACAATGATGAGATC+TGG - chr2.4:60699755-60699774 None:intergenic 40.0%
GTTCAGACATACACCTTTGA+AGG + chr2.4:60700065-60700084 MS.gene02791:CDS 40.0%
TAGGCACGCTGATATTGTTT+AGG + chr2.4:60698700-60698719 MS.gene02791:intron 40.0%
TAGTTAGCTGCATACGACAT+AGG - chr2.4:60699387-60699406 None:intergenic 40.0%
TGGCTCCATCATAATCTTCT+TGG + chr2.4:60700302-60700321 MS.gene02791:CDS 40.0%
TGTTGTGATCAATTACCCGA+TGG + chr2.4:60698773-60698792 MS.gene02791:CDS 40.0%
TTACCGTAGATCTTGGAAAG+AGG - chr2.4:60698524-60698543 None:intergenic 40.0%
TTCTGCAATTGCACTTTGCA+AGG - chr2.4:60699725-60699744 None:intergenic 40.0%
TTGAAGTTAGGGATAACGAG+TGG + chr2.4:60699920-60699939 MS.gene02791:CDS 40.0%
TTGCCTCTTTCCAAGATCTA+CGG + chr2.4:60698518-60698537 MS.gene02791:intron 40.0%
TTGGGCACCAGTATACATAA+AGG + chr2.4:60699972-60699991 MS.gene02791:CDS 40.0%
TTGTTTGACGATATGCTAGG+TGG + chr2.4:60698736-60698755 MS.gene02791:intron 40.0%
TTTGATTGAGGGAAACAGAC+AGG + chr2.4:60700338-60700357 MS.gene02791:CDS 40.0%
! ACATGGGTTACTTGTATGTC+AGG + chr2.4:60699661-60699680 MS.gene02791:CDS 40.0%
! CCCAGATCTCATCATTGTTT+TGG + chr2.4:60699751-60699770 MS.gene02791:CDS 40.0%
! CTTGTGAGTCACCTTTTCTT+AGG - chr2.4:60699351-60699370 None:intergenic 40.0%
!! ATGTATTATGGGTTGATGCC+AGG + chr2.4:60699458-60699477 MS.gene02791:CDS 40.0%
!! ATTTGCTATGCCAAAGAGGT+GGG + chr2.4:60698914-60698933 MS.gene02791:CDS 40.0%
!! CTGCAGTTCAAAAGAGCATT+TGG - chr2.4:60700187-60700206 None:intergenic 40.0%
!! TATTTGCTATGCCAAAGAGG+TGG + chr2.4:60698913-60698932 MS.gene02791:CDS 40.0%
!! TGGAAGTGCCTTACAAGTTA+TGG + chr2.4:60700611-60700630 MS.gene02791:CDS 40.0%
!!! AGAGCATTTGGTTTTCAGCA+AGG - chr2.4:60700175-60700194 None:intergenic 40.0%
!!! AGCATTTGGTTTTCAGCAAG+GGG - chr2.4:60700173-60700192 None:intergenic 40.0%
!!! CAAAGAGCGTGTTTTGATTG+AGG + chr2.4:60700326-60700345 MS.gene02791:CDS 40.0%
!!! GAGCATTTGGTTTTCAGCAA+GGG - chr2.4:60700174-60700193 None:intergenic 40.0%
ACCTCTTGTGTAGGAAACCT+GGG + chr2.4:60698644-60698663 MS.gene02791:intron 45.0%
AGCTCTGTCATCTGTTGCAT+TGG - chr2.4:60699302-60699321 None:intergenic 45.0%
AGTTAGTGGAGTCTCAGAGA+TGG + chr2.4:60699095-60699114 MS.gene02791:CDS 45.0%
ATACTGGTGCCCAATGAACT+CGG - chr2.4:60699966-60699985 None:intergenic 45.0%
ATGCTGCATACCTCTTGTGT+AGG + chr2.4:60698635-60698654 MS.gene02791:intron 45.0%
ATTACCAGGCATTCTCCATC+GGG - chr2.4:60698791-60698810 None:intergenic 45.0%
CACACAAAATCCCACCTCTT+TGG - chr2.4:60698927-60698946 None:intergenic 45.0%
CTCGAACATAACCACGTCTT+AGG + chr2.4:60699136-60699155 MS.gene02791:CDS 45.0%
GAACTACCAGAGTTGTGATC+AGG - chr2.4:60700552-60700571 None:intergenic 45.0%
GCCTTACAAGTTATGGAGGA+GGG + chr2.4:60700618-60700637 MS.gene02791:CDS 45.0%
GGACAAGTTTCTTGGTGGAA+TGG + chr2.4:60699993-60700012 MS.gene02791:CDS 45.0%
GTATCTTAGCACCTAAGACG+TGG - chr2.4:60699150-60699169 None:intergenic 45.0%
TACCTCTTGTGTAGGAAACC+TGG + chr2.4:60698643-60698662 MS.gene02791:intron 45.0%
TCAGAGATGGAGGATATGTG+AGG + chr2.4:60699108-60699127 MS.gene02791:CDS 45.0%
TGCCTTACAAGTTATGGAGG+AGG + chr2.4:60700617-60700636 MS.gene02791:CDS 45.0%
TTCCATTCCAATAGCAGGTG+CGG - chr2.4:60698861-60698880 None:intergenic 45.0%
! AAGAGGTGGGATTTTGTGTG+AGG + chr2.4:60698927-60698946 MS.gene02791:CDS 45.0%
! ATTGAATTTGAGGCGGCATG+GGG + chr2.4:60699880-60699899 MS.gene02791:CDS 45.0%
! GATTGAATTTGAGGCGGCAT+GGG + chr2.4:60699879-60699898 MS.gene02791:CDS 45.0%
! GTGCTTTGTTGTAGCAGTCA+AGG + chr2.4:60698998-60699017 MS.gene02791:CDS 45.0%
! TCCCTCCTCCATAACTTGTA+AGG - chr2.4:60700622-60700641 None:intergenic 45.0%
! TGATTGAATTTGAGGCGGCA+TGG + chr2.4:60699878-60699897 MS.gene02791:CDS 45.0%
ACCACTCAACTACGTGCAGA+TGG + chr2.4:60700282-60700301 MS.gene02791:CDS 50.0%
ACCCAGGTTTCCTACACAAG+AGG - chr2.4:60698648-60698667 None:intergenic 50.0%
ATTACCCGATGGAGAATGCC+TGG + chr2.4:60698784-60698803 MS.gene02791:CDS 50.0%
CAAAAGCTTGACACCGTCGA+CGG + chr2.4:60698428-60698447 MS.gene02791:CDS 50.0%
CTGGTTGTCCTGCCATGATA+AGG + chr2.4:60699068-60699087 MS.gene02791:CDS 50.0%
GAATTTCCCGCACCTGCTAT+TGG + chr2.4:60698851-60698870 MS.gene02791:CDS 50.0%
GGGAAACAGACAGGAGATCA+AGG + chr2.4:60700347-60700366 MS.gene02791:CDS 50.0%
TAGTGGAGTCTCAGAGATGG+AGG + chr2.4:60699098-60699117 MS.gene02791:CDS 50.0%
TCCATTCCAATAGCAGGTGC+GGG - chr2.4:60698860-60698879 None:intergenic 50.0%
! CGCAACCCTCCAAGTTTTTC+TGG - chr2.4:60699802-60699821 None:intergenic 50.0%
! TTAGGTTGTGGGTTGCTTGC+AGG + chr2.4:60699604-60699623 MS.gene02791:CDS 50.0%
!! GTCGACGGTGTCAAGCTTTT+GGG - chr2.4:60698429-60698448 None:intergenic 50.0%
ACTGACGCGCTGCATCGTAA+TGG - chr2.4:60700659-60700678 None:intergenic 55.0%
CATGGCAGGACAACCAGTTC+TGG - chr2.4:60699065-60699084 None:intergenic 55.0%
GCCATCTGCACGTAGTTGAG+TGG - chr2.4:60700286-60700305 None:intergenic 55.0%
TCCCGCACCTGCTATTGGAA+TGG + chr2.4:60698856-60698875 MS.gene02791:CDS 55.0%
!! ACGACATGCAGCTTTGGACC+TGG - chr2.4:60699479-60699498 None:intergenic 55.0%
!! CGTCGACGGTGTCAAGCTTT+TGG - chr2.4:60698430-60698449 None:intergenic 55.0%
!! CTCGTTGCCTAGCTCTGATG+CGG + chr2.4:60699210-60699229 MS.gene02791:CDS 55.0%
!! TTGCCTAGCTCTGATGCGGA+GGG + chr2.4:60699214-60699233 MS.gene02791:CDS 55.0%
AGGTTGAGACTCGCCGTCGA+CGG - chr2.4:60698444-60698463 None:intergenic 60.0%
TTCCCCTCCGCATCAGAGCT+AGG - chr2.4:60699220-60699239 None:intergenic 60.0%
!! GTTGCCTAGCTCTGATGCGG+AGG + chr2.4:60699213-60699232 MS.gene02791:CDS 60.0%
!! TGCCTAGCTCTGATGCGGAG+GGG + chr2.4:60699215-60699234 MS.gene02791:CDS 60.0%


Chromosome Type Strat End Strand Name
chr2.4 gene 60698410 60700728 60698410 ID=MS.gene02791
chr2.4 mRNA 60698410 60700728 60698410 ID=MS.gene02791.t1;Parent=MS.gene02791
chr2.4 exon 60698410 60698490 60698410 ID=MS.gene02791.t1.exon1;Parent=MS.gene02791.t1
chr2.4 CDS 60698410 60698490 60698410 ID=cds.MS.gene02791.t1;Parent=MS.gene02791.t1
chr2.4 exon 60698755 60700728 60698755 ID=MS.gene02791.t1.exon2;Parent=MS.gene02791.t1
chr2.4 CDS 60698755 60700728 60698755 ID=cds.MS.gene02791.t1;Parent=MS.gene02791.t1
Gene Sequence

>MS.gene02791

ATGTCAGAGTTGCAGACCCAAAAGCTTGACACCGTCGACGGCGAGTCTCAACCTCAAGAAGAAGAACAAGAACACCCAAAGGTAATTAATTTTTCATATATATGCTCTTTGCCTCTTTCCAAGATCTACGGTAATTCATAATGAAACAAAATCTCAATTTAATTGTAGCCATTTGAAATAAGTTAGATACGTGATATATTTATGCAAGTAAGTGATTACATGTTTATGCTGCATACCTCTTGTGTAGGAAACCTGGGTAGCGAAATTTAATGTCAATTTAGATTTTGCGTTAGGCACGCTGATATTGTTTAGGTAGCTTATTGATTTTGTTTGACGATATGCTAGGTGGACGACATTTCTGTGTGTTGTGATCAATTACCCGATGGAGAATGCCTGGTAATTGAATTAGATTGTCAAGATGATATTTCTGAAGGAAGAAAAGAATTTCCCGCACCTGCTATTGGAATGGAATTTGAGTCATATGATGATGCTTACAGTTATTATATTTGCTATGCCAAAGAGGTGGGATTTTGTGTGAGGATTAAGAATTCATGTTTCAAGCGAAATAGCAAAGAAAAATATGGTGCAGTGCTTTGTTGTAGCAGTCAAGGTTTCAATAGAACAAAAGATGTTGACATTTTGAGAAAAGAAACCAGAACTGGTTGTCCTGCCATGATAAGGATTAAGTTAGTGGAGTCTCAGAGATGGAGGATATGTGAGGTTACTCTCGAACATAACCACGTCTTAGGTGCTAAGATACATAAATTAGTTAAAAAGATGGCAAGTGGAACTAAAAAGAACTCGTTGCCTAGCTCTGATGCGGAGGGGAAAACAATTAAGATATATCATGCACTTGTGATAGATACAGAAGGTAATGGCAATTTAAACTCCAATGCAACAGATGACAGAGCTTTCTCGAAATATTCTAATAAGTTGAACCTAAGAAAAGGTGACTCACAAGCCATTTATAATTTCCTATGTCGTATGCAGCTAACTAATCCAAACTTCTTTTATTTGATGGATTTCAATGATGAAGGACATTTGAGGAATGTATTATGGGTTGATGCCAGGTCCAAAGCTGCATGTCGTTATTTTAGCGATGTCATTTATTTTGACAACACTTATTTGTCAAATAAATATGAAATTCCTCTTGTGACTTTTGTTGGAATAAATCACCATGGTCAATCTGTGTTATTAGGTTGTGGGTTGCTTGCAGGTGAAACGACCGAATCGTATTCATGGTTGTTTAGAACATGGGTTACTTGTATGTCAGGATGTTCTCCTCAAACTATTATTACGGATAGGTGCAAGACCTTGCAAAGTGCAATTGCAGAAAATTTTCCCAGATCTCATCATTGTTTTGGCTTGTCATTAGTTATGAAAAAAGTACCAGAAAAACTTGGAGGGTTGCGCAATTACGACGCAATCAGAAAAGCACTGATTAAAGCAGTTTATGAGACATTGAAAGTGATTGAATTTGAGGCGGCATGGGGATTTATGATTCAACATTTTGAAGTTAGGGATAACGAGTGGCTGCGTTCCCTATATGAAGACCGAGTTCATTGGGCACCAGTATACATAAAGGACAAGTTTCTTGGTGGAATGGCTACTACACGCCCTAGTGAGAGCATTAGTCCTTTTTTCGATAAATACATGTTCAGACATACACCTTTGAAGGATTTTCTTGACAAGTATGAATTATCTCTTTATAAGAAGTACAAGGAAGAATCTTTAGCAGATATTGAATCTAGAAGCTCTAGCCCCTTGCTGAAAACCAAATGCTCTTTTGAACTGCAGTTGTCTAGCATGTACACAAAAGAAATATTCATGAAGTTCCAACTTGAAGTGGAAGAAATGTTCTCTTGTTTTGGTACCACTCAACTACGTGCAGATGGCTCCATCATAATCTTCTTGGTCAAAGAGCGTGTTTTGATTGAGGGAAACAGACAGGAGATCAAGGATTTTGAAGTTGTTTACAGTAAATCAGCATGTGAAGTCCGTTGTATTTGTTCTTGCTTTAATTTTTATGGATATCTATGTCGGCATGCGCTGTGTGTACTCAATTTTAATGGGGTGGAAGAGATTCCTCCTAAGTACATTCTATCACGGTGGAAGAAAGATTACAAACGCCTTTATATTCCTGATCACAACTCTGGTAGTTCTGATGATATTGAACGTATTCAATGGTCTAATCAGTTATTTGGAAGTGCCTTACAAGTTATGGAGGAGGGAATGATTTCTATAGACCATTACGATGCAGCGCGTCAGTCTTTTGAAGAATCACTTAATAAGGTTCATGATGTAAAACTTGAGAGGTGA
Protein sequence

>MS.gene02791.t1

MSELQTQKLDTVDGESQPQEEEQEHPKVDDISVCCDQLPDGECLVIELDCQDDISEGRKEFPAPAIGMEFESYDDAYSYYICYAKEVGFCVRIKNSCFKRNSKEKYGAVLCCSSQGFNRTKDVDILRKETRTGCPAMIRIKLVESQRWRICEVTLEHNHVLGAKIHKLVKKMASGTKKNSLPSSDAEGKTIKIYHALVIDTEGNGNLNSNATDDRAFSKYSNKLNLRKGDSQAIYNFLCRMQLTNPNFFYLMDFNDEGHLRNVLWVDARSKAACRYFSDVIYFDNTYLSNKYEIPLVTFVGINHHGQSVLLGCGLLAGETTESYSWLFRTWVTCMSGCSPQTIITDRCKTLQSAIAENFPRSHHCFGLSLVMKKVPEKLGGLRNYDAIRKALIKAVYETLKVIEFEAAWGFMIQHFEVRDNEWLRSLYEDRVHWAPVYIKDKFLGGMATTRPSESISPFFDKYMFRHTPLKDFLDKYELSLYKKYKEESLADIESRSSSPLLKTKCSFELQLSSMYTKEIFMKFQLEVEEMFSCFGTTQLRADGSIIIFLVKERVLIEGNRQEIKDFEVVYSKSACEVRCICSCFNFYGYLCRHALCVLNFNGVEEIPPKYILSRWKKDYKRLYIPDHNSGSSDDIERIQWSNQLFGSALQVMEEGMISIDHYDAARQSFEESLNKVHDVKLER