AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene02792

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene02792.t1 MTR_6g051425 30.075 266 177 3 97 353 20 285 1.38e-37 144
MS.gene02792.t1 MTR_1g070355 29.682 283 179 10 53 323 34 308 2.84e-21 99.0
MS.gene02792.t1 MTR_4g067290 36.538 104 63 1 93 193 55 158 3.08e-15 76.3
MS.gene02792.t1 MTR_4g067290 36.538 104 63 1 93 193 55 158 3.20e-15 76.3
MS.gene02792.t1 MTR_4g067290 36.538 104 63 1 93 193 75 178 4.57e-15 76.3
MS.gene02792.t1 MTR_4g067290 36.538 104 63 1 93 193 75 178 4.64e-15 76.3
MS.gene02792.t1 MTR_5g076070 26.408 284 174 10 52 318 17 282 4.71e-15 76.6
MS.gene02792.t1 MTR_4g067290 36.538 104 63 1 93 193 73 176 4.93e-15 76.3
MS.gene02792.t1 MTR_4g067290 36.538 104 63 1 93 193 115 218 5.91e-15 76.6
MS.gene02792.t1 MTR_2g098920 34.014 147 90 3 87 228 75 219 9.30e-15 75.5
MS.gene02792.t1 MTR_0558s0020 25.843 267 148 10 100 329 42 295 3.64e-14 74.3
MS.gene02792.t1 MTR_7g446520 25.714 245 163 5 92 332 86 315 7.86e-14 73.9
MS.gene02792.t1 MTR_8g446020 28.649 185 110 6 157 329 81 255 8.12e-13 69.7
MS.gene02792.t1 MTR_2g098880 29.032 155 94 3 43 191 20 164 1.50e-12 68.6
MS.gene02792.t1 MTR_2g098880 29.032 155 94 3 43 191 32 176 1.83e-12 68.6
MS.gene02792.t1 MTR_7g446510 29.213 178 114 3 169 338 156 329 1.49e-11 67.0
MS.gene02792.t1 MTR_7g446480 28.736 174 120 2 169 338 141 314 4.70e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene02792.t1 AT1G80010 53.528 652 286 7 73 712 74 720 0.0 696
MS.gene02792.t1 AT1G52520 50.147 678 297 13 57 713 42 699 0.0 643
MS.gene02792.t1 AT4G15090 33.387 620 398 6 93 706 50 660 3.85e-120 380
MS.gene02792.t1 AT4G15090 33.387 620 398 6 93 706 50 660 3.85e-120 380
MS.gene02792.t1 AT4G15090 33.387 620 398 6 93 706 50 660 3.85e-120 380
MS.gene02792.t1 AT4G15090 33.387 620 398 6 93 706 50 660 3.85e-120 380
MS.gene02792.t1 AT4G15090 33.387 620 398 6 93 706 50 660 3.85e-120 380
MS.gene02792.t1 AT1G76320 34.138 621 383 9 98 712 1 601 5.31e-112 354
MS.gene02792.t1 AT1G76320 34.138 621 383 9 98 712 1 601 1.45e-111 355
MS.gene02792.t1 AT1G76320 34.138 621 383 9 98 712 1 601 1.45e-111 355
MS.gene02792.t1 AT1G76320 34.138 621 383 9 98 712 1 601 1.47e-111 355
MS.gene02792.t1 AT3G22170 29.250 653 412 7 93 727 69 689 2.35e-104 338
MS.gene02792.t1 AT3G22170 29.250 653 412 7 93 727 69 689 2.35e-104 338
MS.gene02792.t1 AT4G38180 32.982 570 366 8 93 653 72 634 1.82e-103 335
MS.gene02792.t1 AT2G27110 29.586 676 417 15 45 713 16 639 3.58e-92 306
MS.gene02792.t1 AT2G27110 29.586 676 417 15 45 713 16 639 3.58e-92 306
MS.gene02792.t1 AT5G18960 29.430 632 402 9 79 709 196 784 1.32e-89 298
MS.gene02792.t1 AT5G18960 30.159 126 79 1 93 218 42 158 1.00e-12 72.4
MS.gene02792.t1 AT5G18960 29.430 632 402 9 79 709 196 784 1.32e-89 298
MS.gene02792.t1 AT5G18960 30.159 126 79 1 93 218 42 158 1.00e-12 72.4
MS.gene02792.t1 AT3G06250 28.834 652 408 10 67 709 156 760 1.33e-87 292
MS.gene02792.t1 AT3G06250 30.405 148 91 3 93 240 27 162 7.80e-13 72.4
MS.gene02792.t1 AT3G06250 28.834 652 408 10 67 709 156 760 1.33e-87 292
MS.gene02792.t1 AT3G06250 30.405 148 91 3 93 240 27 162 7.80e-13 72.4
MS.gene02792.t1 AT3G06250 28.834 652 408 10 67 709 156 760 1.33e-87 292
MS.gene02792.t1 AT3G06250 30.405 148 91 3 93 240 27 162 7.80e-13 72.4
MS.gene02792.t1 AT2G32250 31.655 556 332 6 97 650 41 550 1.74e-87 291
MS.gene02792.t1 AT2G32250 31.655 556 332 6 97 650 41 550 2.06e-87 292
MS.gene02792.t1 AT2G32250 31.655 556 332 6 97 650 41 550 2.06e-87 292
MS.gene02792.t1 AT2G32250 31.655 556 332 6 97 650 41 550 2.16e-87 292
MS.gene02792.t1 AT2G32250 31.655 556 332 6 97 650 41 550 2.16e-87 292
MS.gene02792.t1 AT2G32250 31.655 556 332 6 97 650 41 550 2.16e-87 292
MS.gene02792.t1 AT2G32250 31.532 555 332 6 98 650 1 509 9.84e-87 290
MS.gene02792.t1 AT2G32250 31.532 555 332 6 98 650 1 509 1.24e-86 290
MS.gene02792.t1 AT2G27110 32.645 484 305 7 237 713 25 494 1.61e-84 282
MS.gene02792.t1 AT4G19990 30.236 592 350 10 96 667 23 571 1.81e-83 281
MS.gene02792.t1 AT4G19990 30.236 592 350 10 96 667 23 571 1.94e-83 280
MS.gene02792.t1 AT4G19990 30.236 592 350 10 96 667 23 571 1.94e-83 280
MS.gene02792.t1 AT4G19990 29.853 613 367 10 75 667 16 585 3.18e-83 280
MS.gene02792.t1 AT4G19990 30.236 592 350 10 96 667 23 571 5.37e-83 280
MS.gene02792.t1 AT4G19990 30.236 592 350 10 96 667 23 571 5.37e-83 280
MS.gene02792.t1 AT4G19990 31.073 531 313 10 145 667 29 514 4.93e-76 259
MS.gene02792.t1 AT4G38170 30.998 471 296 9 265 724 19 471 1.12e-71 244
MS.gene02792.t1 AT1G10240 25.389 579 392 13 92 650 46 604 6.67e-53 195
MS.gene02792.t1 AT1G10240 25.389 579 392 13 92 650 46 604 6.67e-53 195
MS.gene02792.t1 AT5G28530 26.500 600 385 18 94 664 55 627 3.47e-46 176
MS.gene02792.t1 AT5G28530 26.167 600 383 18 94 664 55 623 2.80e-45 173
MS.gene02792.t1 AT5G28530 26.167 600 383 18 94 664 55 623 2.80e-45 173
MS.gene02792.t1 AT5G28530 26.488 336 217 9 336 664 252 564 2.81e-24 108
MS.gene02792.t1 AT5G28530 25.893 336 215 9 336 664 252 560 1.89e-23 105
MS.gene02792.t1 AT3G59470 37.037 108 65 1 93 197 69 176 4.22e-15 76.3
MS.gene02792.t1 AT3G59470 37.037 108 65 1 93 197 69 176 4.22e-15 76.3
MS.gene02792.t1 AT3G59470 37.037 108 65 1 93 197 81 188 4.53e-15 76.6

Find 153 sgRNAs with CRISPR-Local

Find 271 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGAAACCAAATAATGATTT+TGG 0.088603 2.4:-60697059 None:intergenic
GACAATTGAGGAACATATTT+TGG 0.117184 2.4:+60695858 MS.gene02792:CDS
GATATCCCAAAATCATTATT+TGG 0.175601 2.4:+60697053 MS.gene02792:CDS
TGGTTGTCTGGTGCAGTTTC+AGG 0.204396 2.4:+60696213 MS.gene02792:CDS
AATAGCTATGCCAGGGAAAT+TGG 0.208039 2.4:+60695317 MS.gene02792:CDS
AGGGCTGCATATAGTTATTT+TGG 0.210404 2.4:+60695896 MS.gene02792:CDS
AAAATCATTATTTGGTTTCT+TGG 0.223441 2.4:+60697061 MS.gene02792:CDS
TTTGGATTGATTCTAGTTCT+AGG 0.231462 2.4:+60695876 MS.gene02792:CDS
AACTGAAGCTCTTGATGATT+TGG 0.234723 2.4:+60696543 MS.gene02792:CDS
CGGTTTGTAACAATAGTTTC+TGG 0.236513 2.4:-60696103 None:intergenic
AATTAGGACTCACCAGTTTA+TGG 0.247549 2.4:-60695805 None:intergenic
ATTTATAGAGTCTTTGAATA+AGG 0.281326 2.4:+60697089 MS.gene02792:CDS
TAGATGAATTTGAAAGAGAT+TGG 0.315956 2.4:+60696290 MS.gene02792:CDS
AGTCGGCTCAACCTTTCTTT+TGG 0.323275 2.4:-60695612 None:intergenic
TGTGACAATCCTTTATCATT+TGG 0.329411 2.4:-60693663 None:intergenic
ACTGTAGATGCTTCCGGTTA+TGG 0.346656 2.4:+60695677 MS.gene02792:CDS
CTCTACTATTGCACATTCTA+TGG 0.347062 2.4:-60696134 None:intergenic
AAATGATCAAAACACTGAAC+TGG 0.347410 2.4:-60696994 None:intergenic
TTACCGTGATGTCGAGATTA+GGG 0.349365 2.4:-60693689 None:intergenic
CTGTAGATGCTTCCGGTTAT+GGG 0.351570 2.4:+60695678 MS.gene02792:CDS
AGTCAATTGTTTGAGATTGA+TGG 0.375923 2.4:+60695158 MS.gene02792:CDS
CTCTGTCCTCGTGCAAGCTT+CGG 0.376248 2.4:-60696357 None:intergenic
GCACGAGGACAGAGAGCTTT+GGG 0.378976 2.4:+60696366 MS.gene02792:CDS
CTTCTCTTTACTGTTACGTT+TGG 0.380146 2.4:-60695369 None:intergenic
TTTACCGTGATGTCGAGATT+AGG 0.383499 2.4:-60693690 None:intergenic
TTACTTCTGCCACCATAAAC+TGG 0.384916 2.4:+60695793 MS.gene02792:CDS
TTGGATTGATTCTAGTTCTA+GGG 0.391970 2.4:+60695877 MS.gene02792:CDS
AAATGCCTATCATTTCTTAC+CGG 0.393224 2.4:-60696760 None:intergenic
TGAGAGTAGTGGAATCTAAT+AGG 0.393466 2.4:+60695495 MS.gene02792:CDS
ATATTTCGAGCAGGGTTTGA+TGG 0.395255 2.4:-60697367 None:intergenic
TTATTGCATAATGTTGGGTC+AGG 0.399471 2.4:-60696318 None:intergenic
TGCACGAGGACAGAGAGCTT+TGG 0.400964 2.4:+60696365 MS.gene02792:CDS
GATTTCTTATTGCATAATGT+TGG 0.401141 2.4:-60696324 None:intergenic
GATGGTGGCGAACATGAAAA+TGG 0.403685 2.4:+60695176 MS.gene02792:CDS
TGGAATTTCTAATTACGAAA+AGG 0.404269 2.4:+60696420 MS.gene02792:CDS
TCAAACTCCACTCCCTCAAC+AGG 0.406663 2.4:-60695266 None:intergenic
CTTGCAATAGACAAATTCTA+TGG 0.410394 2.4:-60696174 None:intergenic
AGAATTTGAGCTCCCATAAC+CGG 0.414377 2.4:-60695690 None:intergenic
GTGTGTTCTCCAAATGATAA+AGG 0.415956 2.4:+60693654 MS.gene02792:CDS
ATTTCTTATTGCATAATGTT+GGG 0.422728 2.4:-60696323 None:intergenic
ATGCCAACTGTAGATGCTTC+CGG 0.429407 2.4:+60695671 MS.gene02792:CDS
CTATTCGTGTTAAATCTTCG+TGG 0.432290 2.4:+60695345 MS.gene02792:CDS
GGAATTTCTAATTACGAAAA+GGG 0.436213 2.4:+60696421 MS.gene02792:CDS
AATTTGTGAGACGCTGAAAC+AGG 0.436325 2.4:-60696683 None:intergenic
AATGTGTCCTTGGAGTAAAC+TGG 0.441443 2.4:-60696391 None:intergenic
GGTTTGTAACAATAGTTTCT+GGG 0.441868 2.4:-60696102 None:intergenic
CTCTTTCAGGATCAAATGAA+TGG 0.442050 2.4:-60695550 None:intergenic
ACTTCAAAGGCTACCTATGC+AGG 0.442185 2.4:+60696839 MS.gene02792:CDS
ATTCCACTAGTTGCATTTGT+TGG 0.443557 2.4:+60695965 MS.gene02792:CDS
AGATGAATTTGAAAGAGATT+GGG 0.444699 2.4:+60696291 MS.gene02792:CDS
GCAGATCATCCGTGGTTGTC+TGG 0.446361 2.4:+60696201 MS.gene02792:CDS
CTGCATTGTCGGTCATGATT+CGG 0.448661 2.4:-60693632 None:intergenic
CTCCACTCCCTCAACAGGTT+GGG 0.449152 2.4:-60695261 None:intergenic
TGTAATTGCTTTAACTTCAA+AGG 0.458366 2.4:+60696826 MS.gene02792:CDS
GATGCAGGTTGCAGCTGTTA+AGG 0.463308 2.4:+60697344 MS.gene02792:intron
AGAACATCAAGGGGAAGAAC+CGG 0.463849 2.4:+60696741 MS.gene02792:CDS
TGGAGAACACACTGCATTGT+CGG 0.473508 2.4:-60693643 None:intergenic
TAGTGGAATCTAATAGGTGG+AGG 0.476847 2.4:+60695501 MS.gene02792:CDS
ATAGCTATTATAATAGTTGT+AGG 0.483777 2.4:-60695303 None:intergenic
CGCCCAACCTGTTGAGGGAG+TGG 0.485119 2.4:+60695259 MS.gene02792:CDS
TGCTCGAAATATGTGTTTGG+TGG 0.487448 2.4:+60697378 MS.gene02792:CDS
CCCTGCTCGAAATATGTGTT+TGG 0.491484 2.4:+60697375 MS.gene02792:CDS
ACATCATCACCACCTCATCT+TGG 0.493280 2.4:-60696657 None:intergenic
GTCTTGTGTTGTAGTTGTGA+AGG 0.496440 2.4:+60695401 MS.gene02792:CDS
TAGAGAGTTGCAACTCATAG+TGG 0.499235 2.4:-60696603 None:intergenic
CGTAGGAAAGAAACAAGAAC+AGG 0.499540 2.4:+60695452 MS.gene02792:CDS
AGACATTTGAAACGTATACT+TGG 0.502054 2.4:+60696041 MS.gene02792:CDS
ATCCTTAATTACAATGGTGT+GGG 0.502114 2.4:+60696874 MS.gene02792:CDS
ACTATTATAATAGCTATGCC+AGG 0.505200 2.4:+60695309 MS.gene02792:CDS
TTATCATAATTCATGTATGT+AGG 0.507183 2.4:-60697402 None:intergenic
AAGAACCGGTAAGAAATGAT+AGG 0.508332 2.4:+60696755 MS.gene02792:CDS
ACCAAACACATATTTCGAGC+AGG 0.509508 2.4:-60697376 None:intergenic
CACATAGGAGGATGGACAGT+GGG 0.512891 2.4:+60695588 MS.gene02792:CDS
CAAATTCTATGGTGAGCCCT+CGG 0.514324 2.4:-60696163 None:intergenic
ATTACAAATGCAACGTACTT+CGG 0.514793 2.4:-60696809 None:intergenic
TACTATTTCCAGATAGATGA+GGG 0.522528 2.4:+60695071 MS.gene02792:intron
TAAGCAACTACTTGAGGTTG+AGG 0.526880 2.4:+60695106 MS.gene02792:CDS
GGACAGTGGGGCCAAAAGAA+AGG 0.531952 2.4:+60695601 MS.gene02792:CDS
ATACTTGGTTATTTAGAGCA+TGG 0.532023 2.4:+60696056 MS.gene02792:CDS
GGGAGCTCAAATTCTAATGA+AGG 0.533763 2.4:+60695698 MS.gene02792:CDS
ATCAAAACACTGAACTGGGT+TGG 0.536498 2.4:-60696989 None:intergenic
AGACTACGCCCAACCTGTTG+AGG 0.540785 2.4:+60695253 MS.gene02792:CDS
AAATTCTATGGTGAGCCCTC+GGG 0.542802 2.4:-60696162 None:intergenic
CAGAACTCATGTGAACTCTC+TGG 0.546800 2.4:+60693609 None:intergenic
TATCCTTAATTACAATGGTG+TGG 0.549164 2.4:+60696873 MS.gene02792:CDS
ACTCCACTCCCTCAACAGGT+TGG 0.553844 2.4:-60695262 None:intergenic
GACTACGCCCAACCTGTTGA+GGG 0.556672 2.4:+60695254 MS.gene02792:CDS
GTGATGGATCTGAATGATGA+TGG 0.557426 2.4:+60695836 MS.gene02792:CDS
AATAGCAAATCCAATTTCCC+TGG 0.562021 2.4:-60695327 None:intergenic
CCAAACACATATTTCGAGCA+GGG 0.562427 2.4:-60697375 None:intergenic
TATACAAGGCATGCCTGCAT+AGG 0.564010 2.4:-60696852 None:intergenic
GGAAGATGAGGCATTTCAGA+TGG 0.566330 2.4:+60696234 MS.gene02792:CDS
TATTGCATAATGTTGGGTCA+GGG 0.567535 2.4:-60696317 None:intergenic
ACATGGTAAAAGAACATCAA+GGG 0.568150 2.4:+60696731 MS.gene02792:CDS
CGAGTCTATAGTGACATACA+TGG 0.575473 2.4:+60696714 MS.gene02792:CDS
TTGTATATCCTTAATTACAA+TGG 0.575751 2.4:+60696868 MS.gene02792:CDS
CACATTCTATGGTCTTACAT+CGG 0.577150 2.4:-60696123 None:intergenic
CTCTAAATCACATAGGAGGA+TGG 0.578313 2.4:+60695580 MS.gene02792:CDS
GTTTGTAACAATAGTTTCTG+GGG 0.579296 2.4:-60696101 None:intergenic
TTTGTAACAATAGTTTCTGG+GGG 0.582883 2.4:-60696100 None:intergenic
TTACTATTTCCAGATAGATG+AGG 0.583204 2.4:+60695070 MS.gene02792:intron
GTGGCGAACATGAAAATGGA+AGG 0.585092 2.4:+60695180 MS.gene02792:CDS
ACTACTTGAGGTTGAGGACA+AGG 0.585298 2.4:+60695112 MS.gene02792:CDS
AATGATCAAAACACTGAACT+GGG 0.585970 2.4:-60696993 None:intergenic
ACAAAGTAAGCAACTACTTG+AGG 0.589391 2.4:+60695100 MS.gene02792:CDS
TCCTTAATTACAATGGTGTG+GGG 0.589480 2.4:+60696875 MS.gene02792:CDS
ATAAAGAAGCTAATAGTCGT+AGG 0.594056 2.4:+60695435 MS.gene02792:CDS
TACATGGTAAAAGAACATCA+AGG 0.596297 2.4:+60696730 MS.gene02792:CDS
ACACCAACAAATGCAACTAG+TGG 0.596327 2.4:-60695968 None:intergenic
TTGGGCTCCAGTTTACTCCA+AGG 0.596913 2.4:+60696384 MS.gene02792:CDS
AAAACTCTAAATCACATAGG+AGG 0.599156 2.4:+60695576 MS.gene02792:CDS
GCTCGAAATATGTGTTTGGT+GGG 0.599382 2.4:+60697379 MS.gene02792:CDS
CGACTCTAGATGTTGAAGTA+CGG 0.600367 2.4:+60695630 MS.gene02792:CDS
GGAATCTAATAGGTGGAGGG+TGG 0.600823 2.4:+60695505 MS.gene02792:CDS
CTTGACAAAATATAATGACA+TGG 0.602201 2.4:-60696904 None:intergenic
CAAGTCTTGCAGATCATCCG+TGG 0.605006 2.4:+60696193 MS.gene02792:CDS
ATTCAATAAGTTCCAAGATG+AGG 0.606495 2.4:+60696645 MS.gene02792:CDS
CATAGAATGTGCAATAGTAG+AGG 0.608377 2.4:+60696135 MS.gene02792:CDS
GGTATGCAAGTAGTTGAAGA+AGG 0.610848 2.4:+60697027 MS.gene02792:CDS
TAACCGGAAGCATCTACAGT+TGG 0.612183 2.4:-60695674 None:intergenic
ACTATGACTGTCAACTCCCG+TGG 0.616006 2.4:-60695210 None:intergenic
GAGTAGTGGAATCTAATAGG+TGG 0.616272 2.4:+60695498 MS.gene02792:CDS
CAATAAGTTCCAAGATGAGG+TGG 0.616780 2.4:+60696648 MS.gene02792:CDS
AGCTCAAATTCTAATGAAGG+AGG 0.617343 2.4:+60695701 MS.gene02792:CDS
CGCAAAACTCTAAATCACAT+AGG 0.623536 2.4:+60695573 MS.gene02792:CDS
AATGGAAGGGAGGAAACCAC+GGG 0.626247 2.4:+60695194 MS.gene02792:CDS
GGTGCAGTTTCAGGAAGATG+AGG 0.635119 2.4:+60696222 MS.gene02792:CDS
AAATGGAAGGGAGGAAACCA+CGG 0.638573 2.4:+60695193 MS.gene02792:CDS
AAGCCCTAATCTCGACATCA+CGG 0.640632 2.4:+60693686 MS.gene02792:CDS
CCTTAATTACAATGGTGTGG+GGG 0.643743 2.4:+60696876 MS.gene02792:CDS
ATTGTAATTAAGGATATACA+AGG 0.644132 2.4:-60696866 None:intergenic
CATGGTAAAAGAACATCAAG+GGG 0.645016 2.4:+60696732 MS.gene02792:CDS
CGTACTTCAACATCTAGAGT+CGG 0.648024 2.4:-60695629 None:intergenic
CTATTATAATAGCTATGCCA+GGG 0.648310 2.4:+60695310 MS.gene02792:CDS
TTTGTTGGTGTTAATCACCA+TGG 0.653331 2.4:+60695980 MS.gene02792:CDS
ACATTGTCAGAGCTGAGATG+TGG 0.654932 2.4:-60696958 None:intergenic
TAGGACTCACCAGTTTATGG+TGG 0.657453 2.4:-60695802 None:intergenic
CAATTGTTTGAGATTGATGG+TGG 0.658357 2.4:+60695161 MS.gene02792:CDS
AGTGGAATCTAATAGGTGGA+GGG 0.661358 2.4:+60695502 MS.gene02792:CDS
TTTGATCATTTGTACAAACG+TGG 0.664936 2.4:+60697006 MS.gene02792:CDS
AATGATTAGACTGAGAGTAG+TGG 0.669263 2.4:+60695484 MS.gene02792:CDS
TGGCGAACATGAAAATGGAA+GGG 0.678993 2.4:+60695181 MS.gene02792:CDS
CGAACATGAAAATGGAAGGG+AGG 0.681120 2.4:+60695184 MS.gene02792:CDS
TTGTAACAATAGTTTCTGGG+GGG 0.684006 2.4:-60696099 None:intergenic
CTACTTGAGGTTGAGGACAA+GGG 0.687690 2.4:+60695113 MS.gene02792:CDS
AAAGCTCCGAAGCTTGCACG+AGG 0.688357 2.4:+60696351 MS.gene02792:CDS
CTAGCAAAACAGATTGACCA+TGG 0.689075 2.4:-60695997 None:intergenic
GAAACTGCACCAGACAACCA+CGG 0.692031 2.4:-60696210 None:intergenic
TCACATAGGAGGATGGACAG+TGG 0.701404 2.4:+60695587 MS.gene02792:CDS
ACTATTTCCAGATAGATGAG+GGG 0.701880 2.4:+60695072 MS.gene02792:intron
ACATAGGAGGATGGACAGTG+GGG 0.705660 2.4:+60695589 MS.gene02792:CDS
CGTAACAGTAAAGAGAAGCG+TGG 0.709182 2.4:+60695374 MS.gene02792:CDS
TGAATGATGATGGACAATTG+AGG 0.749302 2.4:+60695846 MS.gene02792:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATATTTTTTATTGATTAAC+AGG + chr2.4:60694272-60694291 MS.gene02792:intron 10.0%
!!! ATATTGTTAACAATTTTAAA+GGG - chr2.4:60694533-60694552 None:intergenic 10.0%
!!! TATATTGTTAACAATTTTAA+AGG - chr2.4:60694534-60694553 None:intergenic 10.0%
!! AGTAATATAAAATTTCATGT+TGG + chr2.4:60694938-60694957 MS.gene02792:intron 15.0%
!! ATAATCAGTGTTATAAATAA+AGG - chr2.4:60694727-60694746 None:intergenic 15.0%
!! ATTATTTCACATAATTACTT+TGG + chr2.4:60694249-60694268 MS.gene02792:intron 15.0%
!! GTAATATAAAATTTCATGTT+GGG + chr2.4:60694939-60694958 MS.gene02792:intron 15.0%
!! TGAAACTTATATTGTTAATA+TGG - chr2.4:60694594-60694613 None:intergenic 15.0%
!!! TATTGTTAACAATTTTAAAG+GGG - chr2.4:60694532-60694551 None:intergenic 15.0%
!!! TGAAATTTTATATTACTTAC+AGG - chr2.4:60694935-60694954 None:intergenic 15.0%
!! AAGATATAATGATAGTATAG+TGG + chr2.4:60694844-60694863 MS.gene02792:intron 20.0%
!! AAGATTAAAAATTCAGAGTT+TGG - chr2.4:60693876-60693895 None:intergenic 20.0%
!! AGATATAATGATAGTATAGT+GGG + chr2.4:60694845-60694864 MS.gene02792:intron 20.0%
!! ATAGCTATTATAATAGTTGT+AGG - chr2.4:60695306-60695325 None:intergenic 20.0%
!! ATTGTAATTAAGGATATACA+AGG - chr2.4:60696869-60696888 None:intergenic 20.0%
!! ATTTATAGAGTCTTTGAATA+AGG + chr2.4:60697089-60697108 MS.gene02792:CDS 20.0%
!! ATTTCTTATTGCATAATGTT+GGG - chr2.4:60696326-60696345 None:intergenic 20.0%
!! CATGGTTACTTAAAATAAAA+GGG + chr2.4:60694130-60694149 MS.gene02792:intron 20.0%
!! GTCATAACATAATATAATAG+CGG + chr2.4:60694655-60694674 MS.gene02792:intron 20.0%
!! TCAAAGAGAAAAAAAATTGT+GGG + chr2.4:60694459-60694478 MS.gene02792:intron 20.0%
!! TCATGGTTACTTAAAATAAA+AGG + chr2.4:60694129-60694148 MS.gene02792:intron 20.0%
!! TGTTATGACATTGATATTAT+TGG - chr2.4:60694644-60694663 None:intergenic 20.0%
!! TGTTTGCAAATAAATAGTTT+GGG - chr2.4:60693809-60693828 None:intergenic 20.0%
!! TTATCATAATTCATGTATGT+AGG - chr2.4:60697405-60697424 None:intergenic 20.0%
!! TTCAAAGAGAAAAAAAATTG+TGG + chr2.4:60694458-60694477 MS.gene02792:intron 20.0%
!! TTGTATATCCTTAATTACAA+TGG + chr2.4:60696868-60696887 MS.gene02792:CDS 20.0%
!! TTGTTTGCAAATAAATAGTT+TGG - chr2.4:60693810-60693829 None:intergenic 20.0%
!!! AAAAATTTGAAGTGATAAAC+AGG - chr2.4:60694179-60694198 None:intergenic 20.0%
!!! AAAATCATTATTTGGTTTCT+TGG + chr2.4:60697061-60697080 MS.gene02792:CDS 20.0%
!!! AAGAAACCAAATAATGATTT+TGG - chr2.4:60697062-60697081 None:intergenic 20.0%
!!! AGAAACCAAATAATGATTTT+GGG - chr2.4:60697061-60697080 None:intergenic 20.0%
!!! AGAATAATTGTTTTTGAAGA+AGG + chr2.4:60694298-60694317 MS.gene02792:intron 20.0%
!!! CAAATTCATCTAATGTTTTA+GGG - chr2.4:60696282-60696301 None:intergenic 20.0%
!!! GAATAATTGTTTTTGAAGAA+GGG + chr2.4:60694299-60694318 MS.gene02792:intron 20.0%
!!! TCAAATTCATCTAATGTTTT+AGG - chr2.4:60696283-60696302 None:intergenic 20.0%
!!! TTTTAATGATAACACTGATA+GGG + chr2.4:60694485-60694504 MS.gene02792:intron 20.0%
!!! TTTTTAATGATAACACTGAT+AGG + chr2.4:60694484-60694503 MS.gene02792:intron 20.0%
! AACAATATAACCATGATTCA+AGG + chr2.4:60694545-60694564 MS.gene02792:intron 25.0%
! AGAACAATTTATGTATCAGA+AGG - chr2.4:60697206-60697225 None:intergenic 25.0%
! AGATGAATTTGAAAGAGATT+GGG + chr2.4:60696291-60696310 MS.gene02792:CDS 25.0%
! CTTGACAAAATATAATGACA+TGG - chr2.4:60696907-60696926 None:intergenic 25.0%
! GATATCCCAAAATCATTATT+TGG + chr2.4:60697053-60697072 MS.gene02792:CDS 25.0%
! GATTTCTTATTGCATAATGT+TGG - chr2.4:60696327-60696346 None:intergenic 25.0%
! GGAATTTCTAATTACGAAAA+GGG + chr2.4:60696421-60696440 MS.gene02792:CDS 25.0%
! GTGAAATAATCAATGTCATT+AGG - chr2.4:60694239-60694258 None:intergenic 25.0%
! TAGATGAATTTGAAAGAGAT+TGG + chr2.4:60696290-60696309 MS.gene02792:CDS 25.0%
! TCCATCACATAGAAAAAATT+AGG - chr2.4:60695824-60695843 None:intergenic 25.0%
! TGGAATTTCTAATTACGAAA+AGG + chr2.4:60696420-60696439 MS.gene02792:CDS 25.0%
! TTACTTAAAATAAAAGGGAG+TGG + chr2.4:60694135-60694154 MS.gene02792:intron 25.0%
! TTTAATGATAACACTGATAG+GGG + chr2.4:60694486-60694505 MS.gene02792:intron 25.0%
!! AAATAAATAGTTTGGGTTAG+AGG - chr2.4:60693802-60693821 None:intergenic 25.0%
!! ATAGAATGTGAATGTCTTTT+TGG + chr2.4:60697273-60697292 MS.gene02792:intron 25.0%
!! ATTATATTTTGTCAAGATGG+AGG + chr2.4:60696911-60696930 MS.gene02792:CDS 25.0%
!! GTCATTATATTTTGTCAAGA+TGG + chr2.4:60696908-60696927 MS.gene02792:CDS 25.0%
!! TGTAATTGCTTTAACTTCAA+AGG + chr2.4:60696826-60696845 MS.gene02792:CDS 25.0%
!! TTTTGTTGAGAAAAGAAAAG+AGG + chr2.4:60693837-60693856 MS.gene02792:intron 25.0%
!!! ATCTATGATTCCCTTTTTTA+AGG + chr2.4:60696447-60696466 MS.gene02792:CDS 25.0%
!!! TCCTAATTTTTTCTATGTGA+TGG + chr2.4:60695820-60695839 MS.gene02792:CDS 25.0%
!!! TCTATGATTCCCTTTTTTAA+GGG + chr2.4:60696448-60696467 MS.gene02792:CDS 25.0%
!!! TCTGTTTTTTAAGTTCAAAG+TGG + chr2.4:60694015-60694034 MS.gene02792:intron 25.0%
AAAACTCTAAATCACATAGG+AGG + chr2.4:60695576-60695595 MS.gene02792:CDS 30.0%
AAACAAGTCATTAAGTTCCA+TGG - chr2.4:60693728-60693747 None:intergenic 30.0%
AAATGATCAAAACACTGAAC+TGG - chr2.4:60696997-60697016 None:intergenic 30.0%
AAATGCCTATCATTTCTTAC+CGG - chr2.4:60696763-60696782 None:intergenic 30.0%
AATATAACCATGATTCAAGG+CGG + chr2.4:60694548-60694567 MS.gene02792:intron 30.0%
AATGATCAAAACACTGAACT+GGG - chr2.4:60696996-60697015 None:intergenic 30.0%
AATTTATGTATCAGAAGGCA+TGG - chr2.4:60697201-60697220 None:intergenic 30.0%
ACATGGTAAAAGAACATCAA+GGG + chr2.4:60696731-60696750 MS.gene02792:CDS 30.0%
ACTATTATAATAGCTATGCC+AGG + chr2.4:60695309-60695328 MS.gene02792:CDS 30.0%
ATAAAGAAGCTAATAGTCGT+AGG + chr2.4:60695435-60695454 MS.gene02792:CDS 30.0%
ATCCTTAATTACAATGGTGT+GGG + chr2.4:60696874-60696893 MS.gene02792:CDS 30.0%
ATGCTAATATGTTGTGCATA+AGG + chr2.4:60697155-60697174 MS.gene02792:intron 30.0%
ATTACAAATGCAACGTACTT+CGG - chr2.4:60696812-60696831 None:intergenic 30.0%
ATTCAATAAGTTCCAAGATG+AGG + chr2.4:60696645-60696664 MS.gene02792:CDS 30.0%
CTATTATAATAGCTATGCCA+GGG + chr2.4:60695310-60695329 MS.gene02792:CDS 30.0%
CTTGCAATAGACAAATTCTA+TGG - chr2.4:60696177-60696196 None:intergenic 30.0%
GGTTTGTAACAATAGTTTCT+GGG - chr2.4:60696105-60696124 None:intergenic 30.0%
GTAAATCTTCATCTTAACCA+TGG + chr2.4:60693708-60693727 MS.gene02792:intron 30.0%
GTTTGTAACAATAGTTTCTG+GGG - chr2.4:60696104-60696123 None:intergenic 30.0%
TACATGGTAAAAGAACATCA+AGG + chr2.4:60696730-60696749 MS.gene02792:CDS 30.0%
TACTATTTCCAGATAGATGA+GGG + chr2.4:60695071-60695090 MS.gene02792:intron 30.0%
TATCCTTAATTACAATGGTG+TGG + chr2.4:60696873-60696892 MS.gene02792:CDS 30.0%
TGTGACAATCCTTTATCATT+TGG - chr2.4:60693666-60693685 None:intergenic 30.0%
TTACTATTTCCAGATAGATG+AGG + chr2.4:60695070-60695089 MS.gene02792:intron 30.0%
TTTGATCATTTGTACAAACG+TGG + chr2.4:60697006-60697025 MS.gene02792:CDS 30.0%
! AAACAGTGTTGTTAAATAGC+AGG + chr2.4:60694343-60694362 MS.gene02792:intron 30.0%
! AGACATTTGAAACGTATACT+TGG + chr2.4:60696041-60696060 MS.gene02792:CDS 30.0%
! AGTCAATTGTTTGAGATTGA+TGG + chr2.4:60695158-60695177 MS.gene02792:CDS 30.0%
! ATACTTGGTTATTTAGAGCA+TGG + chr2.4:60696056-60696075 MS.gene02792:CDS 30.0%
! ATTTATGTATCAGAAGGCAT+GGG - chr2.4:60697200-60697219 None:intergenic 30.0%
! CTTTGTTTATGTTAGCCATT+AGG + chr2.4:60694201-60694220 MS.gene02792:intron 30.0%
! GACAATTGAGGAACATATTT+TGG + chr2.4:60695858-60695877 MS.gene02792:CDS 30.0%
! TAATGATAGTATAGTGGGAA+AGG + chr2.4:60694850-60694869 MS.gene02792:intron 30.0%
! TTTGTAACAATAGTTTCTGG+GGG - chr2.4:60696103-60696122 None:intergenic 30.0%
!! TTGGATTGATTCTAGTTCTA+GGG + chr2.4:60695877-60695896 MS.gene02792:CDS 30.0%
!! TTTGGATTGATTCTAGTTCT+AGG + chr2.4:60695876-60695895 MS.gene02792:CDS 30.0%
!!! ATATAGTTATTTTGGTGACG+TGG + chr2.4:60695904-60695923 MS.gene02792:CDS 30.0%
AAGAACCGGTAAGAAATGAT+AGG + chr2.4:60696755-60696774 MS.gene02792:CDS 35.0%
AATAGCAAATCCAATTTCCC+TGG - chr2.4:60695330-60695349 None:intergenic 35.0%
AATGATTAGACTGAGAGTAG+TGG + chr2.4:60695484-60695503 MS.gene02792:CDS 35.0%
AATGCATAAACCATAGTGGT+TGG + chr2.4:60697320-60697339 MS.gene02792:intron 35.0%
AATTAGGACTCACCAGTTTA+TGG - chr2.4:60695808-60695827 None:intergenic 35.0%
AATTTCATGTTGGGAACTGT+AGG + chr2.4:60694948-60694967 MS.gene02792:intron 35.0%
ACAAAGTAAGCAACTACTTG+AGG + chr2.4:60695100-60695119 MS.gene02792:CDS 35.0%
ACTATTTCCAGATAGATGAG+GGG + chr2.4:60695072-60695091 MS.gene02792:intron 35.0%
AGAGAATAAAGAGACGACTA+GGG + chr2.4:60694616-60694635 MS.gene02792:intron 35.0%
AGCTCAAATTCTAATGAAGG+AGG + chr2.4:60695701-60695720 MS.gene02792:CDS 35.0%
AGGAGACTGAAGCTAAAAAA+AGG + chr2.4:60695749-60695768 MS.gene02792:CDS 35.0%
ATACAGGATCATGATTGTGT+AGG + chr2.4:60694886-60694905 MS.gene02792:intron 35.0%
ATCATGAGGAACATCCATAA+CGG - chr2.4:60694778-60694797 None:intergenic 35.0%
ATGCACATGACCCTTAAAAA+AGG - chr2.4:60696461-60696480 None:intergenic 35.0%
ATTCCACTAGTTGCATTTGT+TGG + chr2.4:60695965-60695984 MS.gene02792:CDS 35.0%
CATAGAATGTGCAATAGTAG+AGG + chr2.4:60696135-60696154 MS.gene02792:CDS 35.0%
CATGGGTGAACAAAAATGAA+TGG - chr2.4:60697183-60697202 None:intergenic 35.0%
CATGGTAAAAGAACATCAAG+GGG + chr2.4:60696732-60696751 MS.gene02792:CDS 35.0%
CATTTCCAACTATGACATTG+TGG + chr2.4:60693946-60693965 MS.gene02792:intron 35.0%
CGCAAAACTCTAAATCACAT+AGG + chr2.4:60695573-60695592 MS.gene02792:CDS 35.0%
CGGTTTGTAACAATAGTTTC+TGG - chr2.4:60696106-60696125 None:intergenic 35.0%
CGTTAGTGTGAGATAAATGA+GGG + chr2.4:60694081-60694100 MS.gene02792:intron 35.0%
CTATTCGTGTTAAATCTTCG+TGG + chr2.4:60695345-60695364 MS.gene02792:CDS 35.0%
CTCCAAGTTCTGTGAAAAAA+TGG + chr2.4:60694040-60694059 MS.gene02792:intron 35.0%
CTCTACTATTGCACATTCTA+TGG - chr2.4:60696137-60696156 None:intergenic 35.0%
CTCTTTCAGGATCAAATGAA+TGG - chr2.4:60695553-60695572 None:intergenic 35.0%
CTTCTCTTTACTGTTACGTT+TGG - chr2.4:60695372-60695391 None:intergenic 35.0%
GATCAATGCATAAACCATAG+TGG + chr2.4:60697316-60697335 MS.gene02792:intron 35.0%
GTGTGTTCTCCAAATGATAA+AGG + chr2.4:60693654-60693673 MS.gene02792:CDS 35.0%
GTTGGAAATGCAAATCAATC+AGG - chr2.4:60693936-60693955 None:intergenic 35.0%
TACAGGATCATGATTGTGTA+GGG + chr2.4:60694887-60694906 MS.gene02792:intron 35.0%
TATTGCATAATGTTGGGTCA+GGG - chr2.4:60696320-60696339 None:intergenic 35.0%
TCCTTAATTACAATGGTGTG+GGG + chr2.4:60696875-60696894 MS.gene02792:CDS 35.0%
TCGTTAGTGTGAGATAAATG+AGG + chr2.4:60694080-60694099 MS.gene02792:intron 35.0%
TGCACATGACCCTTAAAAAA+GGG - chr2.4:60696460-60696479 None:intergenic 35.0%
TTATTGCATAATGTTGGGTC+AGG - chr2.4:60696321-60696340 None:intergenic 35.0%
! AACTGAAGCTCTTGATGATT+TGG + chr2.4:60696543-60696562 MS.gene02792:CDS 35.0%
! AGGGCTGCATATAGTTATTT+TGG + chr2.4:60695896-60695915 MS.gene02792:CDS 35.0%
! CAATTGTTTGAGATTGATGG+TGG + chr2.4:60695161-60695180 MS.gene02792:CDS 35.0%
! CACATTCTATGGTCTTACAT+CGG - chr2.4:60696126-60696145 None:intergenic 35.0%
! TATAGTGGGAAAGGTGAAAA+CGG + chr2.4:60694859-60694878 MS.gene02792:intron 35.0%
! TGAGAGTAGTGGAATCTAAT+AGG + chr2.4:60695495-60695514 MS.gene02792:CDS 35.0%
! TTATGCGTTTTGCGAATTTC+TGG + chr2.4:60694680-60694699 MS.gene02792:intron 35.0%
! TTGTAACAATAGTTTCTGGG+GGG - chr2.4:60696102-60696121 None:intergenic 35.0%
!! TGAATGATGATGGACAATTG+AGG + chr2.4:60695846-60695865 MS.gene02792:CDS 35.0%
!! TTTGTTGGTGTTAATCACCA+TGG + chr2.4:60695980-60695999 MS.gene02792:CDS 35.0%
!!! CACCATTTTTTCACAGAACT+TGG - chr2.4:60694045-60694064 None:intergenic 35.0%
!!! TTTTTTTAGCTTCAGTCTCC+TGG - chr2.4:60695750-60695769 None:intergenic 35.0%
AAATAAAAGGGAGTGGTGCA+TGG + chr2.4:60694142-60694161 MS.gene02792:intron 40.0%
AACCATGACTGCAAGACAAT+TGG - chr2.4:60694117-60694136 None:intergenic 40.0%
AACTATATCTTCCACACGAG+TGG - chr2.4:60694810-60694829 None:intergenic 40.0%
AATAGCTATGCCAGGGAAAT+TGG + chr2.4:60695317-60695336 MS.gene02792:CDS 40.0%
AATGTGTCCTTGGAGTAAAC+TGG - chr2.4:60696394-60696413 None:intergenic 40.0%
AATTTGTGAGACGCTGAAAC+AGG - chr2.4:60696686-60696705 None:intergenic 40.0%
ACACCAACAAATGCAACTAG+TGG - chr2.4:60695971-60695990 None:intergenic 40.0%
ACCAAACACATATTTCGAGC+AGG - chr2.4:60697379-60697398 None:intergenic 40.0%
ACTTGCCACAATGTCATAGT+TGG - chr2.4:60693954-60693973 None:intergenic 40.0%
AGAATTTGAGCTCCCATAAC+CGG - chr2.4:60695693-60695712 None:intergenic 40.0%
AGTGGAATCTAATAGGTGGA+GGG + chr2.4:60695502-60695521 MS.gene02792:CDS 40.0%
ATATTTCGAGCAGGGTTTGA+TGG - chr2.4:60697370-60697389 None:intergenic 40.0%
ATCAAAACACTGAACTGGGT+TGG - chr2.4:60696992-60697011 None:intergenic 40.0%
ATCACAACCAAGCACAAAGA+TGG - chr2.4:60694974-60694993 None:intergenic 40.0%
ATGGATGTTCCTCATGATCT+TGG + chr2.4:60694780-60694799 MS.gene02792:intron 40.0%
ATTTGATCCGCCTTGAATCA+TGG - chr2.4:60694558-60694577 None:intergenic 40.0%
CAATAAGTTCCAAGATGAGG+TGG + chr2.4:60696648-60696667 MS.gene02792:CDS 40.0%
CAGAGAATAAAGAGACGACT+AGG + chr2.4:60694615-60694634 MS.gene02792:intron 40.0%
CCAAACACATATTTCGAGCA+GGG - chr2.4:60697378-60697397 None:intergenic 40.0%
CCTTAATTACAATGGTGTGG+GGG + chr2.4:60696876-60696895 MS.gene02792:CDS 40.0%
CGACTCTAGATGTTGAAGTA+CGG + chr2.4:60695630-60695649 MS.gene02792:CDS 40.0%
CGAGTCTATAGTGACATACA+TGG + chr2.4:60696714-60696733 MS.gene02792:CDS 40.0%
CGTAGGAAAGAAACAAGAAC+AGG + chr2.4:60695452-60695471 MS.gene02792:CDS 40.0%
CTAGCAAAACAGATTGACCA+TGG - chr2.4:60696000-60696019 None:intergenic 40.0%
CTCTAAATCACATAGGAGGA+TGG + chr2.4:60695580-60695599 MS.gene02792:CDS 40.0%
GCTCGAAATATGTGTTTGGT+GGG + chr2.4:60697379-60697398 MS.gene02792:CDS 40.0%
GGGAGCTCAAATTCTAATGA+AGG + chr2.4:60695698-60695717 MS.gene02792:CDS 40.0%
GGTATGCAAGTAGTTGAAGA+AGG + chr2.4:60697027-60697046 MS.gene02792:CDS 40.0%
GTCTTGTGTTGTAGTTGTGA+AGG + chr2.4:60695401-60695420 MS.gene02792:CDS 40.0%
GTTAGCCATTAGGATGTCAT+AGG + chr2.4:60694211-60694230 MS.gene02792:intron 40.0%
TAAGCAACTACTTGAGGTTG+AGG + chr2.4:60695106-60695125 MS.gene02792:CDS 40.0%
TAGAGAGTTGCAACTCATAG+TGG - chr2.4:60696606-60696625 None:intergenic 40.0%
TAGTGGAATCTAATAGGTGG+AGG + chr2.4:60695501-60695520 MS.gene02792:CDS 40.0%
TCCAGCAAAAAATGTGTCCT+TGG - chr2.4:60696404-60696423 None:intergenic 40.0%
TCGTGTGGAAGATATAGTTG+TGG + chr2.4:60694811-60694830 MS.gene02792:intron 40.0%
TGCTATGCTGAAACTGTATG+CGG + chr2.4:60694390-60694409 MS.gene02792:intron 40.0%
TGCTCGAAATATGTGTTTGG+TGG + chr2.4:60697378-60697397 MS.gene02792:CDS 40.0%
TGGCGAACATGAAAATGGAA+GGG + chr2.4:60695181-60695200 MS.gene02792:CDS 40.0%
TTACCGTGATGTCGAGATTA+GGG - chr2.4:60693692-60693711 None:intergenic 40.0%
TTACTTCTGCCACCATAAAC+TGG + chr2.4:60695793-60695812 MS.gene02792:CDS 40.0%
TTTACCGTGATGTCGAGATT+AGG - chr2.4:60693693-60693712 None:intergenic 40.0%
! AATAGTAGAGGTTTTCCCGA+GGG + chr2.4:60696147-60696166 MS.gene02792:CDS 40.0%
! ATAGTGGGAAAGGTGAAAAC+GGG + chr2.4:60694860-60694879 MS.gene02792:intron 40.0%
! CAATCTGTTTTGCTAGGATG+TGG + chr2.4:60696004-60696023 MS.gene02792:CDS 40.0%
! CATGGTCAATCTGTTTTGCT+AGG + chr2.4:60695998-60696017 MS.gene02792:CDS 40.0%
! CGTACTTCAACATCTAGAGT+CGG - chr2.4:60695632-60695651 None:intergenic 40.0%
! GAGTAGTGGAATCTAATAGG+TGG + chr2.4:60695498-60695517 MS.gene02792:CDS 40.0%
! GCAACAACGTTAAGTTTTCC+AGG + chr2.4:60695729-60695748 MS.gene02792:CDS 40.0%
! TGTGCTTTTCAGTCTGATGT+TGG + chr2.4:60693753-60693772 MS.gene02792:intron 40.0%
! TTAGAGTTTTGCGCTCTTTC+AGG - chr2.4:60695566-60695585 None:intergenic 40.0%
! TTTTCAGTCTGATGTTGGAC+TGG + chr2.4:60693758-60693777 MS.gene02792:intron 40.0%
!! GTGATGGATCTGAATGATGA+TGG + chr2.4:60695836-60695855 MS.gene02792:CDS 40.0%
!!! TCCAAGGACACATTTTTTGC+TGG + chr2.4:60696400-60696419 MS.gene02792:CDS 40.0%
!!! TGCGAATTTCTGGTGTTTTG+CGG + chr2.4:60694690-60694709 MS.gene02792:intron 40.0%
AAATGGAAGGGAGGAAACCA+CGG + chr2.4:60695193-60695212 MS.gene02792:CDS 45.0%
AAATTCTATGGTGAGCCCTC+GGG - chr2.4:60696165-60696184 None:intergenic 45.0%
AAGCCCTAATCTCGACATCA+CGG + chr2.4:60693686-60693705 MS.gene02792:CDS 45.0%
ACATCATCACCACCTCATCT+TGG - chr2.4:60696660-60696679 None:intergenic 45.0%
ACATTGTCAGAGCTGAGATG+TGG - chr2.4:60696961-60696980 None:intergenic 45.0%
ACTACTTGAGGTTGAGGACA+AGG + chr2.4:60695112-60695131 MS.gene02792:CDS 45.0%
ACTGTAGATGCTTCCGGTTA+TGG + chr2.4:60695677-60695696 MS.gene02792:CDS 45.0%
ACTTCAAAGGCTACCTATGC+AGG + chr2.4:60696839-60696858 MS.gene02792:CDS 45.0%
AGAACATCAAGGGGAAGAAC+CGG + chr2.4:60696741-60696760 MS.gene02792:CDS 45.0%
AGGCACCTATGACATCCTAA+TGG - chr2.4:60694219-60694238 None:intergenic 45.0%
AGGTGAAAACGGGTAGATAC+AGG + chr2.4:60694870-60694889 MS.gene02792:intron 45.0%
ATATCCCCTATTGCCGATCT+GGG - chr2.4:60694430-60694449 None:intergenic 45.0%
ATGCCAACTGTAGATGCTTC+CGG + chr2.4:60695671-60695690 MS.gene02792:CDS 45.0%
CAAATTCTATGGTGAGCCCT+CGG - chr2.4:60696166-60696185 None:intergenic 45.0%
CACCAATTGTCTTGCAGTCA+TGG + chr2.4:60694112-60694131 MS.gene02792:intron 45.0%
CCCCCACACCATTGTAATTA+AGG - chr2.4:60696879-60696898 None:intergenic 45.0%
CCCTGCTCGAAATATGTGTT+TGG + chr2.4:60697375-60697394 MS.gene02792:CDS 45.0%
CGAACATGAAAATGGAAGGG+AGG + chr2.4:60695184-60695203 MS.gene02792:CDS 45.0%
CGTAACAGTAAAGAGAAGCG+TGG + chr2.4:60695374-60695393 MS.gene02792:CDS 45.0%
CTACTTGAGGTTGAGGACAA+GGG + chr2.4:60695113-60695132 MS.gene02792:CDS 45.0%
CTGCATTGTCGGTCATGATT+CGG - chr2.4:60693635-60693654 None:intergenic 45.0%
CTGTAGATGCTTCCGGTTAT+GGG + chr2.4:60695678-60695697 MS.gene02792:CDS 45.0%
GGTTCGTTGTGTAACAGACA+AGG + chr2.4:60697110-60697129 MS.gene02792:intron 45.0%
GTGGCGAACATGAAAATGGA+AGG + chr2.4:60695180-60695199 MS.gene02792:CDS 45.0%
TAGGACTCACCAGTTTATGG+TGG - chr2.4:60695805-60695824 None:intergenic 45.0%
TATACAAGGCATGCCTGCAT+AGG - chr2.4:60696855-60696874 None:intergenic 45.0%
TATATCCCCTATTGCCGATC+TGG - chr2.4:60694431-60694450 None:intergenic 45.0%
TGCTATTCCCAATCCCAGAT+CGG + chr2.4:60694414-60694433 MS.gene02792:intron 45.0%
TGGAGAACACACTGCATTGT+CGG - chr2.4:60693646-60693665 None:intergenic 45.0%
! CAATAGTAGAGGTTTTCCCG+AGG + chr2.4:60696146-60696165 MS.gene02792:CDS 45.0%
! GATGGTGGCGAACATGAAAA+TGG + chr2.4:60695176-60695195 MS.gene02792:CDS 45.0%
! GGAAGATGAGGCATTTCAGA+TGG + chr2.4:60696234-60696253 MS.gene02792:CDS 45.0%
!! AGTCGGCTCAACCTTTCTTT+TGG - chr2.4:60695615-60695634 None:intergenic 45.0%
!! TAACCGGAAGCATCTACAGT+TGG - chr2.4:60695677-60695696 None:intergenic 45.0%
!!! TGGCATCTTGTTTTCAGCTG+TGG - chr2.4:60696586-60696605 None:intergenic 45.0%
AATGGAAGGGAGGAAACCAC+GGG + chr2.4:60695194-60695213 MS.gene02792:CDS 50.0%
ACATAGGAGGATGGACAGTG+GGG + chr2.4:60695589-60695608 MS.gene02792:CDS 50.0%
ACCTGCATCACCAACCACTA+TGG - chr2.4:60697333-60697352 None:intergenic 50.0%
ACTATGACTGTCAACTCCCG+TGG - chr2.4:60695213-60695232 None:intergenic 50.0%
AGATCGATGCCAGTCCGTTA+TGG + chr2.4:60694761-60694780 MS.gene02792:intron 50.0%
AGTGGACAGCCAAGATCATG+AGG - chr2.4:60694792-60694811 None:intergenic 50.0%
CAAGTCTTGCAGATCATCCG+TGG + chr2.4:60696193-60696212 MS.gene02792:CDS 50.0%
CAATCCCAGATCGGCAATAG+GGG + chr2.4:60694423-60694442 MS.gene02792:intron 50.0%
CACATAGGAGGATGGACAGT+GGG + chr2.4:60695588-60695607 MS.gene02792:CDS 50.0%
CCAATCCCAGATCGGCAATA+GGG + chr2.4:60694422-60694441 MS.gene02792:intron 50.0%
CTGTAGGCCATCTTTGTGCT+TGG + chr2.4:60694964-60694983 MS.gene02792:intron 50.0%
GAAACTGCACCAGACAACCA+CGG - chr2.4:60696213-60696232 None:intergenic 50.0%
GATGCAGGTTGCAGCTGTTA+AGG + chr2.4:60697344-60697363 MS.gene02792:intron 50.0%
GGAATCTAATAGGTGGAGGG+TGG + chr2.4:60695505-60695524 MS.gene02792:CDS 50.0%
GGTGCAGTTTCAGGAAGATG+AGG + chr2.4:60696222-60696241 MS.gene02792:CDS 50.0%
GTAGAGACCCCTCATCTATC+TGG - chr2.4:60695082-60695101 None:intergenic 50.0%
TCAAACTCCACTCCCTCAAC+AGG - chr2.4:60695269-60695288 None:intergenic 50.0%
TCACATAGGAGGATGGACAG+TGG + chr2.4:60695587-60695606 MS.gene02792:CDS 50.0%
TGGTTGTCTGGTGCAGTTTC+AGG + chr2.4:60696213-60696232 MS.gene02792:CDS 50.0%
TTGGGCTCCAGTTTACTCCA+AGG + chr2.4:60696384-60696403 MS.gene02792:CDS 50.0%
! CCTATTGCCGATCTGGGATT+GGG - chr2.4:60694424-60694443 None:intergenic 50.0%
!! ACCATAGTGGTTGGTGATGC+AGG + chr2.4:60697329-60697348 MS.gene02792:intron 50.0%
!! GAGGAACATCCATAACGGAC+TGG - chr2.4:60694773-60694792 None:intergenic 50.0%
AAAGCTCCGAAGCTTGCACG+AGG + chr2.4:60696351-60696370 MS.gene02792:CDS 55.0%
ACTCCACTCCCTCAACAGGT+TGG - chr2.4:60695265-60695284 None:intergenic 55.0%
AGACTACGCCCAACCTGTTG+AGG + chr2.4:60695253-60695272 MS.gene02792:CDS 55.0%
ATCTTGGCTGTCCACTCGTG+TGG + chr2.4:60694796-60694815 MS.gene02792:intron 55.0%
CCCAATCCCAGATCGGCAAT+AGG + chr2.4:60694421-60694440 MS.gene02792:intron 55.0%
CTCCACTCCCTCAACAGGTT+GGG - chr2.4:60695264-60695283 None:intergenic 55.0%
CTCTGTCCTCGTGCAAGCTT+CGG - chr2.4:60696360-60696379 None:intergenic 55.0%
GACTACGCCCAACCTGTTGA+GGG + chr2.4:60695254-60695273 MS.gene02792:CDS 55.0%
GCACGAGGACAGAGAGCTTT+GGG + chr2.4:60696366-60696385 MS.gene02792:CDS 55.0%
GCAGATCATCCGTGGTTGTC+TGG + chr2.4:60696201-60696220 MS.gene02792:CDS 55.0%
GGACAGTGGGGCCAAAAGAA+AGG + chr2.4:60695601-60695620 MS.gene02792:CDS 55.0%
TGCACGAGGACAGAGAGCTT+TGG + chr2.4:60696365-60696384 MS.gene02792:CDS 55.0%
! CCCTATTGCCGATCTGGGAT+TGG - chr2.4:60694425-60694444 None:intergenic 55.0%
CGCCCAACCTGTTGAGGGAG+TGG + chr2.4:60695259-60695278 MS.gene02792:CDS 65.0%


Chromosome Type Strat End Strand Name
chr2.4 gene 60693612 60697434 60693612 ID=MS.gene02792
chr2.4 mRNA 60693612 60697434 60693612 ID=MS.gene02792.t1;Parent=MS.gene02792
chr2.4 exon 60693612 60693707 60693612 ID=MS.gene02792.t1.exon1;Parent=MS.gene02792.t1
chr2.4 CDS 60693612 60693707 60693612 ID=cds.MS.gene02792.t1;Parent=MS.gene02792.t1
chr2.4 exon 60695083 60697110 60695083 ID=MS.gene02792.t1.exon2;Parent=MS.gene02792.t1
chr2.4 CDS 60695083 60697110 60695083 ID=cds.MS.gene02792.t1;Parent=MS.gene02792.t1
chr2.4 exon 60697351 60697434 60697351 ID=MS.gene02792.t1.exon3;Parent=MS.gene02792.t1
chr2.4 CDS 60697351 60697434 60697351 ID=cds.MS.gene02792.t1;Parent=MS.gene02792.t1
Gene Sequence

>MS.gene02792

AACTCATGTGAACTCTCTGGCCGAATCATGACCGACAATGCAGTGTGTTCTCCAAATGATAAAGGATTGTCACAAAGCCCTAATCTCGACATCACGGTAAATCTTCATCTTAACCATGGAACTTAATGACTTGTTTTATGCTGTGCTTTTCAGTCTGATGTTGGACTGGATCTTATTTGTCTATCTGCCTCTAACCCAAACTATTTATTTGCAAACAACTCACGCTTTTGTTGAGAAAAGAAAAGAGGAATCAAATTAACGCCAAACTCTGAATTTTTAATCTTTTAAGACTTTAGTGTACTGTATAGTTTTGCTAAATTTCCTGATTGATTTGCATTTCCAACTATGACATTGTGGCAAGTCTTGAAGAACACGATACTCGATTGAGATACTTTTGTAATTTTCTGTTTTTTAAGTTCAAAGTGGTTCTCCAAGTTCTGTGAAAAAATGGTGCAATGTACAATTTTTTCGTTAGTGTGAGATAAATGAGGGAAGAAGTGCACCAATTGTCTTGCAGTCATGGTTACTTAAAATAAAAGGGAGTGGTGCATGGATTTTAATTATCCTGTTTATCACTTCAAATTTTTGTCTTTGTTTATGTTAGCCATTAGGATGTCATAGGTGCCTAATGACATTGATTATTTCACATAATTACTTTGGAATATTTTTTATTGATTAACAGGCATAGAATAATTGTTTTTGAAGAAGGGCATAGAATAATTGTTGATTATAAACAGTGTTGTTAAATAGCAGGATGTGAACAAAAAACTATGAAAACTGCTATGCTGAAACTGTATGCGGCTGCTATTCCCAATCCCAGATCGGCAATAGGGGATATAGCATTAATTCAAAGAGAAAAAAAATTGTGGGTTTTTTTAATGATAACACTGATAGGGGAGCATGTGAGCTGCACATTACCCCTTTAAAATTGTTAACAATATAACCATGATTCAAGGCGGATCAAATCATGCTCTTGATACCATATTAACAATATAAGTTTCAACAGAGAATAAAGAGACGACTAGGGTTCCAATAATATCAATGTCATAACATAATATAATAGCGGATTTATGCGTTTTGCGAATTTCTGGTGTTTTGCGGATTTCTGTGATCCTTTATTTATAACACTGATTATAAATCATTTATCTGAGATCGATGCCAGTCCGTTATGGATGTTCCTCATGATCTTGGCTGTCCACTCGTGTGGAAGATATAGTTGTGGTATTGCTTCAAAGATATAATGATAGTATAGTGGGAAAGGTGAAAACGGGTAGATACAGGATCATGATTGTGTAGGGTGAAAATAAAAGAAACTTCACACCTGTAAGTAATATAAAATTTCATGTTGGGAACTGTAGGCCATCTTTGTGCTTGGTTGTGATATTTCAAGTTCTGTTGTCAAATTCAATGCATACTCAAATTTCTTAGACTGTGTTTAGAATTTGTTTTTTTATTTCATTACTATTTCCAGATAGATGAGGGGTCTCTACAAAGTAAGCAACTACTTGAGGTTGAGGACAAGGGCAACGAGCTTGAGAATGACTGTAGTCAATTGTTTGAGATTGATGGTGGCGAACATGAAAATGGAAGGGAGGAAACCACGGGAGTTGACAGTCATAGTGAAGAATCTCAAAGAACAAAAGACTACGCCCAACCTGTTGAGGGAGTGGAGTTTGAAACTTATGATGATGCCTACAACTATTATAATAGCTATGCCAGGGAAATTGGATTTGCTATTCGTGTTAAATCTTCGTGGACCAAACGTAACAGTAAAGAGAAGCGTGGTGCTGTCTTGTGTTGTAGTTGTGAAGGTTTCAAAACAAATAAAGAAGCTAATAGTCGTAGGAAAGAAACAAGAACAGGCTGTCTAGCAATGATTAGACTGAGAGTAGTGGAATCTAATAGGTGGAGGGTGGATGAAGTCAAGCTTGAGCATAACCATTCATTTGATCCTGAAAGAGCGCAAAACTCTAAATCACATAGGAGGATGGACAGTGGGGCCAAAAGAAAGGTTGAGCCGACTCTAGATGTTGAAGTACGGACAATCAAGTTATATCGAATGCCAACTGTAGATGCTTCCGGTTATGGGAGCTCAAATTCTAATGAAGGAGGAACTAGCAACAACGTTAAGTTTTCCAGGAGACTGAAGCTAAAAAAAGGTGATGCAGAACTTATTTCAAATTACTTCTGCCACCATAAACTGGTGAGTCCTAATTTTTTCTATGTGATGGATCTGAATGATGATGGACAATTGAGGAACATATTTTGGATTGATTCTAGTTCTAGGGCTGCATATAGTTATTTTGGTGACGTGGTTGCATTTGACTCAACATATTTGTCAAACAATTATGAGATTCCACTAGTTGCATTTGTTGGTGTTAATCACCATGGTCAATCTGTTTTGCTAGGATGTGGTCTGCTTGCAGATGAGACATTTGAAACGTATACTTGGTTATTTAGAGCATGGCTTTCTTGTATGTCTAGTCGCCCCCCAGAAACTATTGTTACAAACCGATGTAAGACCATAGAATGTGCAATAGTAGAGGTTTTCCCGAGGGCTCACCATAGAATTTGTCTATTGCAAGTCTTGCAGATCATCCGTGGTTGTCTGGTGCAGTTTCAGGAAGATGAGGCATTTCAGATGGCACTGACAAGAGTGATATATGACCCTAAAACATTAGATGAATTTGAAAGAGATTGGGATTCCCTGACCCAACATTATGCAATAAGAAATCATGCAAAGCTCCGAAGCTTGCACGAGGACAGAGAGCTTTGGGCTCCAGTTTACTCCAAGGACACATTTTTTGCTGGAATTTCTAATTACGAAAAGGGTGAATCTATGATTCCCTTTTTTAAGGGTCATGTGCATCAACAAACTTCTTTGAAAGAATTTTTTGAGATTTATGAATTAGTTCAACAAAAAAAGCAAAAAACTGAAGCTCTTGATGATTTGGAGTCACAAAATTCAAGTCCACAGCTGAAAACAAGATGCCACTATGAGTTGCAACTCTCTAAATTGTACACGAATGCAATATTCAATAAGTTCCAAGATGAGGTGGTGATGATGTCTTCCTGTTTCAGCGTCTCACAAATTCAAACAAACGAGTCTATAGTGACATACATGGTAAAAGAACATCAAGGGGAAGAACCGGTAAGAAATGATAGGCATTTTGAAGTCATGTATGATAAAGCATTAACCGAAGTACGTTGCATTTGTAATTGCTTTAACTTCAAAGGCTACCTATGCAGGCATGCCTTGTATATCCTTAATTACAATGGTGTGGGGGAAATTCCATGTCATTATATTTTGTCAAGATGGAGGAAAGATTTTAAGCGATTGTATGTACCACATCTCAGCTCTGACAATGTTGATATTACCAACCCAGTTCAGTGTTTTGATCATTTGTACAAACGTGGTATGCAAGTAGTTGAAGAAGGCACGATATCCCAAAATCATTATTTGGTTTCTTGGCAGACATTTATAGAGTCTTTGAATAAGGTTCGTTGTGTAACAGACAAGGTTGAATAAATAAATCAGAAATAATGCTAATATGTTGTGCATAAGGTACCATTCATTTTTGTTCACCCATGCCTTCTGATACATAAATTGTTCTCTTATAGTTATAGTTTATGTTAAAAGTTTGCAGAATTATGTGAAAGCATAGAATGTGAATGTCTTTTTGGTTCGTTTACTAAATCAATTTGATCAATGCATAAACCATAGTGGTTGGTGATGCAGGTTGCAGCTGTTAAGGCCATCAAACCCTGCTCGAAATATGTGTTTGGTGGGCCTACATACATGAATTATGATAAAGAGAAATAG
Protein sequence

>MS.gene02792.t1

NSCELSGRIMTDNAVCSPNDKGLSQSPNLDITIDEGSLQSKQLLEVEDKGNELENDCSQLFEIDGGEHENGREETTGVDSHSEESQRTKDYAQPVEGVEFETYDDAYNYYNSYAREIGFAIRVKSSWTKRNSKEKRGAVLCCSCEGFKTNKEANSRRKETRTGCLAMIRLRVVESNRWRVDEVKLEHNHSFDPERAQNSKSHRRMDSGAKRKVEPTLDVEVRTIKLYRMPTVDASGYGSSNSNEGGTSNNVKFSRRLKLKKGDAELISNYFCHHKLVSPNFFYVMDLNDDGQLRNIFWIDSSSRAAYSYFGDVVAFDSTYLSNNYEIPLVAFVGVNHHGQSVLLGCGLLADETFETYTWLFRAWLSCMSSRPPETIVTNRCKTIECAIVEVFPRAHHRICLLQVLQIIRGCLVQFQEDEAFQMALTRVIYDPKTLDEFERDWDSLTQHYAIRNHAKLRSLHEDRELWAPVYSKDTFFAGISNYEKGESMIPFFKGHVHQQTSLKEFFEIYELVQQKKQKTEALDDLESQNSSPQLKTRCHYELQLSKLYTNAIFNKFQDEVVMMSSCFSVSQIQTNESIVTYMVKEHQGEEPVRNDRHFEVMYDKALTEVRCICNCFNFKGYLCRHALYILNYNGVGEIPCHYILSRWRKDFKRLYVPHLSSDNVDITNPVQCFDHLYKRGMQVVEEGTISQNHYLVSWQTFIESLNKVAAVKAIKPCSKYVFGGPTYMNYDKEK