Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene02793.t1 | XP_024631614.1 | 82.2 | 690 | 107 | 4 | 1 | 681 | 1 | 683 | 0.00E+00 | 1147.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene02793.t1 | Q9SSQ4 | 63.1 | 629 | 219 | 6 | 58 | 681 | 79 | 699 | 3.0e-242 | 839.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene02793.t1 | A0A396J867 | 82.2 | 690 | 107 | 4 | 1 | 681 | 1 | 683 | 0.0e+00 | 1147.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene02793.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene02793.t1 | MTR_6g051425 | 28.743 | 334 | 200 | 8 | 38 | 343 | 1 | 324 | 4.68e-33 | 130 |
| MS.gene02793.t1 | MTR_4g067290 | 35.644 | 101 | 62 | 1 | 64 | 161 | 56 | 156 | 1.58e-14 | 73.9 |
| MS.gene02793.t1 | MTR_4g067290 | 35.644 | 101 | 62 | 1 | 64 | 161 | 56 | 156 | 1.58e-14 | 73.9 |
| MS.gene02793.t1 | MTR_4g067290 | 35.644 | 101 | 62 | 1 | 64 | 161 | 76 | 176 | 2.01e-14 | 74.3 |
| MS.gene02793.t1 | MTR_4g067290 | 35.644 | 101 | 62 | 1 | 64 | 161 | 74 | 174 | 2.03e-14 | 74.3 |
| MS.gene02793.t1 | MTR_4g067290 | 35.644 | 101 | 62 | 1 | 64 | 161 | 76 | 176 | 2.04e-14 | 74.3 |
| MS.gene02793.t1 | MTR_4g067290 | 35.644 | 101 | 62 | 1 | 64 | 161 | 116 | 216 | 4.45e-14 | 73.9 |
| MS.gene02793.t1 | MTR_2g098880 | 36.792 | 106 | 57 | 2 | 64 | 161 | 61 | 164 | 5.73e-13 | 69.7 |
| MS.gene02793.t1 | MTR_2g098880 | 36.792 | 106 | 57 | 2 | 64 | 161 | 73 | 176 | 6.37e-13 | 70.1 |
| MS.gene02793.t1 | MTR_2g098920 | 35.644 | 101 | 62 | 1 | 64 | 161 | 80 | 180 | 6.73e-13 | 69.7 |
| MS.gene02793.t1 | MTR_7g446520 | 26.160 | 237 | 157 | 6 | 68 | 299 | 92 | 315 | 1.14e-11 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene02793.t1 | AT1G52520 | 63.116 | 629 | 219 | 6 | 58 | 681 | 79 | 699 | 0.0 | 855 |
| MS.gene02793.t1 | AT1G80010 | 47.476 | 634 | 312 | 9 | 62 | 680 | 93 | 720 | 0.0 | 582 |
| MS.gene02793.t1 | AT4G15090 | 33.968 | 630 | 397 | 8 | 64 | 684 | 51 | 670 | 1.65e-121 | 382 |
| MS.gene02793.t1 | AT4G15090 | 33.968 | 630 | 397 | 8 | 64 | 684 | 51 | 670 | 1.65e-121 | 382 |
| MS.gene02793.t1 | AT4G15090 | 33.968 | 630 | 397 | 8 | 64 | 684 | 51 | 670 | 1.65e-121 | 382 |
| MS.gene02793.t1 | AT4G15090 | 33.968 | 630 | 397 | 8 | 64 | 684 | 51 | 670 | 1.65e-121 | 382 |
| MS.gene02793.t1 | AT4G15090 | 33.968 | 630 | 397 | 8 | 64 | 684 | 51 | 670 | 1.65e-121 | 382 |
| MS.gene02793.t1 | AT3G22170 | 33.333 | 681 | 387 | 11 | 20 | 674 | 29 | 668 | 2.45e-117 | 371 |
| MS.gene02793.t1 | AT3G22170 | 33.333 | 681 | 387 | 11 | 20 | 674 | 29 | 668 | 2.45e-117 | 371 |
| MS.gene02793.t1 | AT1G76320 | 35.135 | 629 | 356 | 13 | 68 | 676 | 1 | 597 | 7.52e-110 | 347 |
| MS.gene02793.t1 | AT1G76320 | 35.135 | 629 | 356 | 13 | 68 | 676 | 1 | 597 | 2.55e-109 | 347 |
| MS.gene02793.t1 | AT1G76320 | 35.135 | 629 | 356 | 13 | 68 | 676 | 1 | 597 | 2.82e-109 | 347 |
| MS.gene02793.t1 | AT1G76320 | 35.135 | 629 | 356 | 13 | 68 | 676 | 1 | 597 | 2.82e-109 | 347 |
| MS.gene02793.t1 | AT4G19990 | 34.272 | 604 | 332 | 9 | 38 | 621 | 1 | 559 | 1.16e-102 | 330 |
| MS.gene02793.t1 | AT4G19990 | 34.272 | 604 | 332 | 9 | 38 | 621 | 1 | 559 | 1.16e-102 | 330 |
| MS.gene02793.t1 | AT4G19990 | 34.272 | 604 | 332 | 9 | 38 | 621 | 1 | 559 | 2.43e-102 | 329 |
| MS.gene02793.t1 | AT4G19990 | 34.272 | 604 | 332 | 9 | 38 | 621 | 1 | 559 | 2.57e-102 | 330 |
| MS.gene02793.t1 | AT4G19990 | 34.272 | 604 | 332 | 9 | 38 | 621 | 1 | 559 | 2.57e-102 | 330 |
| MS.gene02793.t1 | AT4G19990 | 34.443 | 601 | 329 | 9 | 41 | 621 | 18 | 573 | 3.62e-102 | 329 |
| MS.gene02793.t1 | AT4G38180 | 33.391 | 578 | 361 | 11 | 64 | 627 | 73 | 640 | 2.79e-100 | 325 |
| MS.gene02793.t1 | AT4G19990 | 35.673 | 513 | 287 | 7 | 114 | 621 | 28 | 502 | 8.13e-94 | 305 |
| MS.gene02793.t1 | AT2G27110 | 29.781 | 638 | 408 | 12 | 48 | 681 | 38 | 639 | 3.22e-91 | 302 |
| MS.gene02793.t1 | AT2G27110 | 29.781 | 638 | 408 | 12 | 48 | 681 | 38 | 639 | 3.22e-91 | 302 |
| MS.gene02793.t1 | AT3G06250 | 30.189 | 636 | 385 | 13 | 50 | 677 | 176 | 760 | 3.00e-89 | 295 |
| MS.gene02793.t1 | AT3G06250 | 32.692 | 104 | 61 | 1 | 64 | 167 | 28 | 122 | 2.35e-11 | 67.8 |
| MS.gene02793.t1 | AT3G06250 | 30.189 | 636 | 385 | 13 | 50 | 677 | 176 | 760 | 3.00e-89 | 295 |
| MS.gene02793.t1 | AT3G06250 | 32.692 | 104 | 61 | 1 | 64 | 167 | 28 | 122 | 2.35e-11 | 67.8 |
| MS.gene02793.t1 | AT3G06250 | 30.189 | 636 | 385 | 13 | 50 | 677 | 176 | 760 | 3.00e-89 | 295 |
| MS.gene02793.t1 | AT3G06250 | 32.692 | 104 | 61 | 1 | 64 | 167 | 28 | 122 | 2.35e-11 | 67.8 |
| MS.gene02793.t1 | AT5G18960 | 31.018 | 619 | 377 | 15 | 64 | 677 | 211 | 784 | 3.55e-87 | 290 |
| MS.gene02793.t1 | AT5G18960 | 31.018 | 619 | 377 | 15 | 64 | 677 | 211 | 784 | 3.55e-87 | 290 |
| MS.gene02793.t1 | AT2G27110 | 31.172 | 478 | 317 | 5 | 206 | 681 | 27 | 494 | 8.01e-82 | 274 |
| MS.gene02793.t1 | AT2G32250 | 38.421 | 380 | 223 | 5 | 241 | 618 | 180 | 550 | 4.72e-78 | 265 |
| MS.gene02793.t1 | AT2G32250 | 38.421 | 380 | 223 | 5 | 241 | 618 | 139 | 509 | 6.20e-78 | 265 |
| MS.gene02793.t1 | AT2G32250 | 38.421 | 380 | 223 | 5 | 241 | 618 | 139 | 509 | 7.42e-78 | 265 |
| MS.gene02793.t1 | AT2G32250 | 38.421 | 380 | 223 | 5 | 241 | 618 | 180 | 550 | 9.71e-78 | 265 |
| MS.gene02793.t1 | AT2G32250 | 38.421 | 380 | 223 | 5 | 241 | 618 | 180 | 550 | 9.71e-78 | 265 |
| MS.gene02793.t1 | AT2G32250 | 38.421 | 380 | 223 | 5 | 241 | 618 | 180 | 550 | 9.71e-78 | 265 |
| MS.gene02793.t1 | AT2G32250 | 38.421 | 380 | 223 | 5 | 241 | 618 | 180 | 550 | 9.98e-78 | 265 |
| MS.gene02793.t1 | AT2G32250 | 38.421 | 380 | 223 | 5 | 241 | 618 | 180 | 550 | 9.98e-78 | 265 |
| MS.gene02793.t1 | AT4G38170 | 31.180 | 449 | 291 | 8 | 234 | 677 | 21 | 456 | 3.13e-72 | 244 |
| MS.gene02793.t1 | AT1G10240 | 25.966 | 647 | 415 | 16 | 64 | 679 | 48 | 661 | 1.22e-54 | 199 |
| MS.gene02793.t1 | AT1G10240 | 25.966 | 647 | 415 | 16 | 64 | 679 | 48 | 661 | 1.22e-54 | 199 |
| MS.gene02793.t1 | AT5G28530 | 26.121 | 647 | 425 | 18 | 63 | 680 | 54 | 676 | 2.01e-47 | 178 |
| MS.gene02793.t1 | AT5G28530 | 25.966 | 647 | 422 | 18 | 63 | 680 | 54 | 672 | 7.18e-47 | 177 |
| MS.gene02793.t1 | AT5G28530 | 25.966 | 647 | 422 | 18 | 63 | 680 | 54 | 672 | 7.18e-47 | 177 |
| MS.gene02793.t1 | AT5G28530 | 28.312 | 385 | 246 | 11 | 303 | 680 | 252 | 613 | 1.12e-30 | 128 |
| MS.gene02793.t1 | AT5G28530 | 28.052 | 385 | 243 | 11 | 303 | 680 | 252 | 609 | 4.57e-30 | 126 |
| MS.gene02793.t1 | AT3G59470 | 37.624 | 101 | 60 | 1 | 64 | 161 | 70 | 170 | 2.92e-14 | 73.6 |
| MS.gene02793.t1 | AT3G59470 | 37.624 | 101 | 60 | 1 | 64 | 161 | 70 | 170 | 2.92e-14 | 73.6 |
| MS.gene02793.t1 | AT3G59470 | 37.624 | 101 | 60 | 1 | 64 | 161 | 82 | 182 | 3.42e-14 | 73.6 |
Find 0 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACATAAATTAGTTAAAAAGA+TGG | - | 15007:2028-2047 | MS.gene02793:CDS | 15.0% |
| !! | ATGAAAAATTAATTACCTTT+GGG | + | 15007:1347-1366 | None:intergenic | 15.0% |
| !! | TATGAAAAATTAATTACCTT+TGG | + | 15007:1348-1367 | None:intergenic | 15.0% |
| !! | AACATGTATTTATCGAAAAA+AGG | + | 15007:2908-2927 | None:intergenic | 20.0% |
| !!! | ATTTTTATGGATATCTATGT+CGG | - | 15007:3290-3309 | MS.gene02793:intron | 20.0% |
| !!! | TGTTCTTGCTTTAATTTTTA+TGG | - | 15007:3277-3296 | MS.gene02793:intron | 20.0% |
| !!! | TTTTGAAGAATCACTTAATA+AGG | - | 15007:3540-3559 | MS.gene02793:CDS | 20.0% |
| ! | ACATTTGAGGAATGTATTAT+GGG | - | 15007:2307-2326 | MS.gene02793:CDS | 25.0% |
| ! | ACGACATAGGAAATTATAAA+TGG | + | 15007:2234-2253 | None:intergenic | 25.0% |
| ! | ATGATATTGAACGTATTCAA+TGG | - | 15007:3434-3453 | MS.gene02793:intron | 25.0% |
| ! | ATTGAAAGTGATTGAATTTG+AGG | - | 15007:2730-2749 | MS.gene02793:CDS | 25.0% |
| ! | CGAAATAGCAAAGAAAAATA+TGG | - | 15007:1831-1850 | MS.gene02793:CDS | 25.0% |
| ! | CGTATCTAACTTATTTCAAA+TGG | + | 15007:1441-1460 | None:intergenic | 25.0% |
| ! | TAAAGCAAGAACAAATACAA+CGG | + | 15007:3270-3289 | None:intergenic | 25.0% |
| ! | TCCATCAAATAAAAGAAGTT+TGG | + | 15007:2272-2291 | None:intergenic | 25.0% |
| ! | TTCTCCTCAAACTATTATTA+CGG | - | 15007:2547-2566 | MS.gene02793:CDS | 25.0% |
| !! | AATAAGTTGAACCTAAGAAA+AGG | - | 15007:2197-2216 | MS.gene02793:CDS | 25.0% |
| !! | ATCTCTTTATAAGAAGTACA+AGG | - | 15007:2970-2989 | MS.gene02793:CDS | 25.0% |
| !!! | AAAAAAGTACCAGAAAAACT+TGG | - | 15007:2650-2669 | MS.gene02793:CDS | 25.0% |
| !!! | GATTCAACATTTTGAAGTTA+GGG | - | 15007:2769-2788 | MS.gene02793:CDS | 25.0% |
| !!! | TCCAAACTTCTTTTATTTGA+TGG | - | 15007:2268-2287 | MS.gene02793:CDS | 25.0% |
| !!! | TGATTCAACATTTTGAAGTT+AGG | - | 15007:2768-2787 | MS.gene02793:CDS | 25.0% |
| !!! | TGTGTGTACTCAATTTTAAT+GGG | - | 15007:3320-3339 | MS.gene02793:intron | 25.0% |
| AAACAACCATGAATACGATT+CGG | + | 15007:2498-2517 | None:intergenic | 30.0% | |
| AACTTGTCCTTTATGTATAC+TGG | + | 15007:2842-2861 | None:intergenic | 30.0% | |
| AGTTGTGATCAGGAATATAA+AGG | + | 15007:3402-3421 | None:intergenic | 30.0% | |
| CAATGGTCTAATCAGTTATT+TGG | - | 15007:3451-3470 | MS.gene02793:intron | 30.0% | |
| CACTAACTTAATCCTTATCA+TGG | + | 15007:1943-1962 | None:intergenic | 30.0% | |
| CATGATAAGGATTAAGTTAG+TGG | - | 15007:1941-1960 | MS.gene02793:CDS | 30.0% | |
| CTATCCGTAATAATAGTTTG+AGG | + | 15007:2554-2573 | None:intergenic | 30.0% | |
| CTCAAACTATTATTACGGAT+AGG | - | 15007:2552-2571 | MS.gene02793:CDS | 30.0% | |
| GACAATCTAATTCAATTACC+AGG | + | 15007:1665-1684 | None:intergenic | 30.0% | |
| GACATTTGAGGAATGTATTA+TGG | - | 15007:2306-2325 | MS.gene02793:CDS | 30.0% | |
| TACATAAAGGACAAGTTTCT+TGG | - | 15007:2845-2864 | MS.gene02793:CDS | 30.0% | |
| TTAGTTAAAAAGATGGCAAG+TGG | - | 15007:2035-2054 | MS.gene02793:CDS | 30.0% | |
| TTATGAATTACCGTAGATCT+TGG | + | 15007:1391-1410 | None:intergenic | 30.0% | |
| TTCATGATGTAAAACTTGAG+AGG | - | 15007:3563-3582 | MS.gene02793:CDS | 30.0% | |
| TTGTCAAGAAAATCCTTCAA+AGG | + | 15007:2941-2960 | None:intergenic | 30.0% | |
| TTTGACCAAGAAGATTATGA+TGG | + | 15007:3170-3189 | None:intergenic | 30.0% | |
| TTTGTTGGAATAAATCACCA+TGG | - | 15007:2428-2447 | MS.gene02793:CDS | 30.0% | |
| ! | AATCTGTGTTATTAGGTTGT+GGG | - | 15007:2453-2472 | MS.gene02793:CDS | 30.0% |
| ! | ATTCATGGTTGTTTAGAACA+TGG | - | 15007:2504-2523 | MS.gene02793:CDS | 30.0% |
| ! | CTGTGTGTACTCAATTTTAA+TGG | - | 15007:3319-3338 | MS.gene02793:intron | 30.0% |
| ! | GTCAATTTAGATTTTGCGTT+AGG | - | 15007:1541-1560 | MS.gene02793:CDS | 30.0% |
| ! | TGTCAAGATGATATTTCTGA+AGG | - | 15007:1681-1700 | MS.gene02793:CDS | 30.0% |
| ! | TTCATGGTTGTTTAGAACAT+GGG | - | 15007:2505-2524 | MS.gene02793:CDS | 30.0% |
| !! | ATTTTGTTTGACGATATGCT+AGG | - | 15007:1593-1612 | MS.gene02793:CDS | 30.0% |
| !! | GAAGAAATGTTCTCTTGTTT+TGG | - | 15007:3118-3137 | MS.gene02793:CDS | 30.0% |
| !! | GTGTGTACTCAATTTTAATG+GGG | - | 15007:3321-3340 | MS.gene02793:intron | 30.0% |
| !! | TTATATTTGCTATGCCAAAG+AGG | - | 15007:1770-1789 | MS.gene02793:CDS | 30.0% |
| !! | TTGATGGATTTCAATGATGA+AGG | - | 15007:2284-2303 | MS.gene02793:CDS | 30.0% |
| AAAATAACGACATGCAGCTT+TGG | + | 15007:2345-2364 | None:intergenic | 35.0% | |
| AACTTAATCCTTATCATGGC+AGG | + | 15007:1939-1958 | None:intergenic | 35.0% | |
| AAGTACCAGAAAAACTTGGA+GGG | - | 15007:2654-2673 | MS.gene02793:CDS | 35.0% | |
| AATGAACTCGGTCTTCATAT+AGG | + | 15007:2814-2833 | None:intergenic | 35.0% | |
| ACATTTCTTCCACTTCAAGT+TGG | + | 15007:3108-3127 | None:intergenic | 35.0% | |
| ATAAAGGACAAGTTTCTTGG+TGG | - | 15007:2848-2867 | MS.gene02793:CDS | 35.0% | |
| ATATGAAGACCGAGTTCATT+GGG | - | 15007:2814-2833 | MS.gene02793:CDS | 35.0% | |
| ATGAACTCGGTCTTCATATA+GGG | + | 15007:2813-2832 | None:intergenic | 35.0% | |
| ATTCCAACAAAAGTCACAAG+AGG | + | 15007:2419-2438 | None:intergenic | 35.0% | |
| CCAAAACAATGATGAGATCT+GGG | + | 15007:2614-2633 | None:intergenic | 35.0% | |
| CTAATAACACAGATTGACCA+TGG | + | 15007:2448-2467 | None:intergenic | 35.0% | |
| CTCCTAAGTACATTCTATCA+CGG | - | 15007:3356-3375 | MS.gene02793:intron | 35.0% | |
| GAAAGTGATTGAATTTGAGG+CGG | - | 15007:2733-2752 | MS.gene02793:CDS | 35.0% | |
| GTGATAGATACAGAAGGTAA+TGG | - | 15007:2125-2144 | MS.gene02793:CDS | 35.0% | |
| TATATGAAGACCGAGTTCAT+TGG | - | 15007:2813-2832 | MS.gene02793:CDS | 35.0% | |
| TATATTCCTGATCACAACTC+TGG | - | 15007:3403-3422 | MS.gene02793:intron | 35.0% | |
| TCAAATTCCATTCCAATAGC+AGG | + | 15007:1726-1745 | None:intergenic | 35.0% | |
| TCAATGATGAAGGACATTTG+AGG | - | 15007:2294-2313 | MS.gene02793:CDS | 35.0% | |
| TGTTCTTGTTCTTCTTCTTG+AGG | + | 15007:1324-1343 | None:intergenic | 35.0% | |
| TTGAGAAAAGAAACCAGAAC+TGG | - | 15007:1909-1928 | MS.gene02793:CDS | 35.0% | |
| ! | AAAGTACCAGAAAAACTTGG+AGG | - | 15007:2653-2672 | MS.gene02793:CDS | 35.0% |
| ! | ATTCCTCTTGTGACTTTTGT+TGG | - | 15007:2413-2432 | MS.gene02793:CDS | 35.0% |
| ! | CAATCTGTGTTATTAGGTTG+TGG | - | 15007:2452-2471 | MS.gene02793:CDS | 35.0% |
| ! | CATGGTCAATCTGTGTTATT+AGG | - | 15007:2446-2465 | MS.gene02793:CDS | 35.0% |
| !! | TGTACTCAATTTTAATGGGG+TGG | - | 15007:3324-3343 | MS.gene02793:intron | 35.0% |
| !!! | AAAGAGCGTGTTTTGATTGA+GGG | - | 15007:3187-3206 | MS.gene02793:CDS | 35.0% |
| AAACGACCGAATCGTATTCA+TGG | - | 15007:2489-2508 | MS.gene02793:CDS | 40.0% | |
| AAAGGACTAATGCTCTCACT+AGG | + | 15007:2890-2909 | None:intergenic | 40.0% | |
| AAGGACTAATGCTCTCACTA+GGG | + | 15007:2889-2908 | None:intergenic | 40.0% | |
| AAGTGCCTTACAAGTTATGG+AGG | - | 15007:3474-3493 | MS.gene02793:intron | 40.0% | |
| AATTACCAGGCATTCTCCAT+CGG | + | 15007:1652-1671 | None:intergenic | 40.0% | |
| AGAAGAACAAGAACACCCAA+AGG | - | 15007:1329-1348 | MS.gene02793:CDS | 40.0% | |
| CACCGTGATAGAATGTACTT+AGG | + | 15007:3361-3380 | None:intergenic | 40.0% | |
| CATGAAGTTCCAACTTGAAG+TGG | - | 15007:3096-3115 | MS.gene02793:CDS | 40.0% | |
| CGTGATAGAATGTACTTAGG+AGG | + | 15007:3358-3377 | None:intergenic | 40.0% | |
| CTAAGTACATTCTATCACGG+TGG | - | 15007:3359-3378 | MS.gene02793:intron | 40.0% | |
| GACATTAAATTTCGCTACCC+AGG | + | 15007:1524-1543 | None:intergenic | 40.0% | |
| GCACTTGTGATAGATACAGA+AGG | - | 15007:2119-2138 | MS.gene02793:CDS | 40.0% | |
| GCCAAAACAATGATGAGATC+TGG | + | 15007:2615-2634 | None:intergenic | 40.0% | |
| GTTCAGACATACACCTTTGA+AGG | - | 15007:2925-2944 | MS.gene02793:CDS | 40.0% | |
| TAGGCACGCTGATATTGTTT+AGG | - | 15007:1560-1579 | MS.gene02793:CDS | 40.0% | |
| TAGTTAGCTGCATACGACAT+AGG | + | 15007:2247-2266 | None:intergenic | 40.0% | |
| TGGCTCCATCATAATCTTCT+TGG | - | 15007:3162-3181 | MS.gene02793:CDS | 40.0% | |
| TGTTGTGATCAATTACCCGA+TGG | - | 15007:1633-1652 | MS.gene02793:CDS | 40.0% | |
| TTACCGTAGATCTTGGAAAG+AGG | + | 15007:1384-1403 | None:intergenic | 40.0% | |
| TTCTGCAATTGCACTTTGCA+AGG | + | 15007:2585-2604 | None:intergenic | 40.0% | |
| TTGAAGTTAGGGATAACGAG+TGG | - | 15007:2780-2799 | MS.gene02793:CDS | 40.0% | |
| TTGCCTCTTTCCAAGATCTA+CGG | - | 15007:1378-1397 | MS.gene02793:CDS | 40.0% | |
| TTGGGCACCAGTATACATAA+AGG | - | 15007:2832-2851 | MS.gene02793:CDS | 40.0% | |
| TTGTTTGACGATATGCTAGG+TGG | - | 15007:1596-1615 | MS.gene02793:CDS | 40.0% | |
| TTTGATTGAGGGAAACAGAC+AGG | - | 15007:3198-3217 | MS.gene02793:CDS | 40.0% | |
| ! | ACATGGGTTACTTGTATGTC+AGG | - | 15007:2521-2540 | MS.gene02793:CDS | 40.0% |
| ! | CCCAGATCTCATCATTGTTT+TGG | - | 15007:2611-2630 | MS.gene02793:CDS | 40.0% |
| ! | CTTGTGAGTCACCTTTTCTT+AGG | + | 15007:2211-2230 | None:intergenic | 40.0% |
| !! | ATGTATTATGGGTTGATGCC+AGG | - | 15007:2318-2337 | MS.gene02793:CDS | 40.0% |
| !! | ATTTGCTATGCCAAAGAGGT+GGG | - | 15007:1774-1793 | MS.gene02793:CDS | 40.0% |
| !! | CTGCAGTTCAAAAGAGCATT+TGG | + | 15007:3047-3066 | None:intergenic | 40.0% |
| !! | TATTTGCTATGCCAAAGAGG+TGG | - | 15007:1773-1792 | MS.gene02793:CDS | 40.0% |
| !! | TGGAAGTGCCTTACAAGTTA+TGG | - | 15007:3471-3490 | MS.gene02793:intron | 40.0% |
| !!! | AGAGCATTTGGTTTTCAGCA+AGG | + | 15007:3035-3054 | None:intergenic | 40.0% |
| !!! | AGCATTTGGTTTTCAGCAAG+GGG | + | 15007:3033-3052 | None:intergenic | 40.0% |
| !!! | CAAAGAGCGTGTTTTGATTG+AGG | - | 15007:3186-3205 | MS.gene02793:CDS | 40.0% |
| !!! | GAGCATTTGGTTTTCAGCAA+GGG | + | 15007:3034-3053 | None:intergenic | 40.0% |
| ACCTCTTGTGTAGGAAACCT+GGG | - | 15007:1504-1523 | MS.gene02793:CDS | 45.0% | |
| AGCTCTGTCATCTGTTGCAT+TGG | + | 15007:2162-2181 | None:intergenic | 45.0% | |
| AGTTAGTGGAGTCTCAGAGA+TGG | - | 15007:1955-1974 | MS.gene02793:CDS | 45.0% | |
| ATACTGGTGCCCAATGAACT+CGG | + | 15007:2826-2845 | None:intergenic | 45.0% | |
| ATGCTGCATACCTCTTGTGT+AGG | - | 15007:1495-1514 | MS.gene02793:CDS | 45.0% | |
| ATTACCAGGCATTCTCCATC+GGG | + | 15007:1651-1670 | None:intergenic | 45.0% | |
| CACACAAAATCCCACCTCTT+TGG | + | 15007:1787-1806 | None:intergenic | 45.0% | |
| CTCGAACATAACCACGTCTT+AGG | - | 15007:1996-2015 | MS.gene02793:CDS | 45.0% | |
| GAACTACCAGAGTTGTGATC+AGG | + | 15007:3412-3431 | None:intergenic | 45.0% | |
| GCCTTACAAGTTATGGAGGA+GGG | - | 15007:3478-3497 | MS.gene02793:intron | 45.0% | |
| GGACAAGTTTCTTGGTGGAA+TGG | - | 15007:2853-2872 | MS.gene02793:CDS | 45.0% | |
| GTATCTTAGCACCTAAGACG+TGG | + | 15007:2010-2029 | None:intergenic | 45.0% | |
| TACCTCTTGTGTAGGAAACC+TGG | - | 15007:1503-1522 | MS.gene02793:CDS | 45.0% | |
| TCAGAGATGGAGGATATGTG+AGG | - | 15007:1968-1987 | MS.gene02793:CDS | 45.0% | |
| TGCCTTACAAGTTATGGAGG+AGG | - | 15007:3477-3496 | MS.gene02793:intron | 45.0% | |
| TTCCATTCCAATAGCAGGTG+CGG | + | 15007:1721-1740 | None:intergenic | 45.0% | |
| ! | AAGAGGTGGGATTTTGTGTG+AGG | - | 15007:1787-1806 | MS.gene02793:CDS | 45.0% |
| ! | ATTGAATTTGAGGCGGCATG+GGG | - | 15007:2740-2759 | MS.gene02793:CDS | 45.0% |
| ! | GATTGAATTTGAGGCGGCAT+GGG | - | 15007:2739-2758 | MS.gene02793:CDS | 45.0% |
| ! | GTGCTTTGTTGTAGCAGTCA+AGG | - | 15007:1858-1877 | MS.gene02793:CDS | 45.0% |
| ! | TCCCTCCTCCATAACTTGTA+AGG | + | 15007:3482-3501 | None:intergenic | 45.0% |
| ! | TGATTGAATTTGAGGCGGCA+TGG | - | 15007:2738-2757 | MS.gene02793:CDS | 45.0% |
| ACCACTCAACTACGTGCAGA+TGG | - | 15007:3142-3161 | MS.gene02793:CDS | 50.0% | |
| ACCCAGGTTTCCTACACAAG+AGG | + | 15007:1508-1527 | None:intergenic | 50.0% | |
| ATTACCCGATGGAGAATGCC+TGG | - | 15007:1644-1663 | MS.gene02793:CDS | 50.0% | |
| CAAAAGCTTGACACCGTCGA+CGG | - | 15007:1288-1307 | MS.gene02793:CDS | 50.0% | |
| CTGGTTGTCCTGCCATGATA+AGG | - | 15007:1928-1947 | MS.gene02793:CDS | 50.0% | |
| GAATTTCCCGCACCTGCTAT+TGG | - | 15007:1711-1730 | MS.gene02793:CDS | 50.0% | |
| GGGAAACAGACAGGAGATCA+AGG | - | 15007:3207-3226 | MS.gene02793:CDS | 50.0% | |
| TAGTGGAGTCTCAGAGATGG+AGG | - | 15007:1958-1977 | MS.gene02793:CDS | 50.0% | |
| TCCATTCCAATAGCAGGTGC+GGG | + | 15007:1720-1739 | None:intergenic | 50.0% | |
| ! | CGCAACCCTCCAAGTTTTTC+TGG | + | 15007:2662-2681 | None:intergenic | 50.0% |
| ! | TTAGGTTGTGGGTTGCTTGC+AGG | - | 15007:2464-2483 | MS.gene02793:CDS | 50.0% |
| !! | GTCGACGGTGTCAAGCTTTT+GGG | + | 15007:1289-1308 | None:intergenic | 50.0% |
| ACTGACGCGCTGCATCGTAA+TGG | + | 15007:3519-3538 | None:intergenic | 55.0% | |
| CATGGCAGGACAACCAGTTC+TGG | + | 15007:1925-1944 | None:intergenic | 55.0% | |
| GCCATCTGCACGTAGTTGAG+TGG | + | 15007:3146-3165 | None:intergenic | 55.0% | |
| TCCCGCACCTGCTATTGGAA+TGG | - | 15007:1716-1735 | MS.gene02793:CDS | 55.0% | |
| !! | ACGACATGCAGCTTTGGACC+TGG | + | 15007:2339-2358 | None:intergenic | 55.0% |
| !! | CGTCGACGGTGTCAAGCTTT+TGG | + | 15007:1290-1309 | None:intergenic | 55.0% |
| !! | CTCGTTGCCTAGCTCTGATG+CGG | - | 15007:2070-2089 | MS.gene02793:CDS | 55.0% |
| !! | TTGCCTAGCTCTGATGCGGA+GGG | - | 15007:2074-2093 | MS.gene02793:CDS | 55.0% |
| AGGTTGAGACTCGCCGTCGA+CGG | + | 15007:1304-1323 | None:intergenic | 60.0% | |
| TTCCCCTCCGCATCAGAGCT+AGG | + | 15007:2080-2099 | None:intergenic | 60.0% | |
| !! | GTTGCCTAGCTCTGATGCGG+AGG | - | 15007:2073-2092 | MS.gene02793:CDS | 60.0% |
| !! | TGCCTAGCTCTGATGCGGAG+GGG | - | 15007:2075-2094 | MS.gene02793:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 15007 | gene | 1270 | 3588 | 1270 | ID=MS.gene02793 |
| 15007 | mRNA | 1270 | 3588 | 1270 | ID=MS.gene02793.t1;Parent=MS.gene02793 |
| 15007 | exon | 3508 | 3588 | 3508 | ID=MS.gene02793.t1.exon1;Parent=MS.gene02793.t1 |
| 15007 | CDS | 3508 | 3588 | 3508 | ID=cds.MS.gene02793.t1;Parent=MS.gene02793.t1 |
| 15007 | exon | 1270 | 3243 | 1270 | ID=MS.gene02793.t1.exon2;Parent=MS.gene02793.t1 |
| 15007 | CDS | 1270 | 3243 | 1270 | ID=cds.MS.gene02793.t1;Parent=MS.gene02793.t1 |
| Gene Sequence |
| Protein sequence |
