Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene027952.t1 | XP_003612811.1 | 98.2 | 715 | 12 | 1 | 172 | 886 | 88 | 801 | 0.00E+00 | 1402.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene027952.t1 | A2ZAI7 | 57.8 | 756 | 263 | 15 | 173 | 881 | 134 | 880 | 1.2e-232 | 807.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene027952.t1 | G7KCC4 | 98.2 | 715 | 12 | 1 | 172 | 886 | 88 | 801 | 0.0e+00 | 1402.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene027952.t1 | TF | HB-HD-ZIP |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene027952.t1 | MTR_5g029320 | 98.278 | 755 | 12 | 1 | 132 | 886 | 48 | 801 | 0.0 | 1547 |
MS.gene027952.t1 | MTR_6g477820 | 47.476 | 733 | 361 | 13 | 145 | 863 | 1 | 723 | 0.0 | 659 |
MS.gene027952.t1 | MTR_2g088470 | 44.429 | 736 | 360 | 15 | 141 | 865 | 37 | 734 | 0.0 | 619 |
MS.gene027952.t1 | MTR_4g047800 | 46.023 | 704 | 337 | 13 | 173 | 865 | 60 | 731 | 0.0 | 613 |
MS.gene027952.t1 | MTR_8g432540 | 43.825 | 753 | 392 | 16 | 125 | 863 | 71 | 806 | 0.0 | 613 |
MS.gene027952.t1 | MTR_7g076080 | 44.170 | 729 | 368 | 16 | 150 | 863 | 70 | 774 | 0.0 | 600 |
MS.gene027952.t1 | MTR_1g101280 | 41.272 | 739 | 406 | 13 | 141 | 863 | 24 | 750 | 0.0 | 570 |
MS.gene027952.t1 | MTR_0198s0030 | 41.791 | 737 | 396 | 17 | 147 | 863 | 28 | 751 | 4.40e-175 | 525 |
MS.gene027952.t1 | MTR_7g427710 | 42.023 | 702 | 317 | 17 | 173 | 863 | 16 | 638 | 6.66e-170 | 508 |
MS.gene027952.t1 | MTR_2g101720 | 38.061 | 691 | 380 | 10 | 177 | 863 | 143 | 789 | 2.27e-158 | 483 |
MS.gene027952.t1 | MTR_5g005600 | 36.515 | 723 | 409 | 19 | 155 | 863 | 30 | 716 | 3.93e-135 | 421 |
MS.gene027952.t1 | MTR_2g030570 | 32.656 | 738 | 435 | 19 | 145 | 863 | 1 | 695 | 2.50e-122 | 386 |
MS.gene027952.t1 | MTR_2g030600 | 32.306 | 746 | 420 | 25 | 145 | 863 | 1 | 688 | 8.91e-113 | 361 |
MS.gene027952.t1 | MTR_7g427690 | 44.529 | 393 | 192 | 8 | 349 | 734 | 43 | 416 | 2.96e-102 | 325 |
MS.gene027952.t1 | MTR_2g030660 | 34.830 | 646 | 352 | 22 | 157 | 789 | 2 | 591 | 2.98e-101 | 329 |
MS.gene027952.t1 | MTR_7g427700 | 38.365 | 318 | 136 | 5 | 173 | 484 | 16 | 279 | 7.89e-63 | 219 |
MS.gene027952.t1 | MTR_7g427700 | 39.752 | 161 | 87 | 3 | 703 | 863 | 281 | 431 | 1.51e-23 | 105 |
MS.gene027952.t1 | MTR_2g083350 | 29.868 | 529 | 315 | 14 | 372 | 863 | 22 | 531 | 9.07e-59 | 211 |
MS.gene027952.t1 | MTR_2g083330 | 31.081 | 444 | 279 | 9 | 425 | 863 | 104 | 525 | 4.20e-57 | 206 |
MS.gene027952.t1 | MTR_0653s0020 | 46.032 | 189 | 88 | 3 | 549 | 736 | 1 | 176 | 1.76e-50 | 176 |
MS.gene027952.t1 | MTR_5g046040 | 47.500 | 160 | 82 | 2 | 172 | 330 | 32 | 190 | 2.44e-38 | 147 |
MS.gene027952.t1 | MTR_7g027265 | 52.101 | 119 | 56 | 1 | 175 | 293 | 19 | 136 | 6.80e-36 | 132 |
MS.gene027952.t1 | MTR_2g030690 | 35.556 | 225 | 134 | 7 | 572 | 789 | 1 | 221 | 7.29e-32 | 126 |
MS.gene027952.t1 | MTR_7g027605 | 51.613 | 93 | 43 | 2 | 454 | 546 | 1 | 91 | 3.25e-20 | 86.7 |
MS.gene027952.t1 | MTR_2g451350 | 33.577 | 137 | 79 | 3 | 379 | 509 | 1 | 131 | 2.19e-19 | 85.5 |
MS.gene027952.t1 | MTR_6g027290 | 26.829 | 164 | 111 | 1 | 149 | 312 | 10 | 164 | 4.83e-17 | 80.1 |
MS.gene027952.t1 | MTR_1g105420 | 33.831 | 201 | 98 | 9 | 228 | 416 | 1 | 178 | 3.84e-16 | 78.6 |
MS.gene027952.t1 | MTR_0653s0010 | 39.167 | 120 | 66 | 2 | 744 | 863 | 2 | 114 | 6.58e-14 | 69.3 |
MS.gene027952.t1 | MTR_7g427670 | 37.113 | 97 | 49 | 1 | 227 | 323 | 32 | 116 | 1.33e-13 | 68.9 |
MS.gene027952.t1 | MTR_4g100550 | 35.115 | 131 | 84 | 1 | 132 | 261 | 75 | 205 | 1.58e-13 | 72.4 |
MS.gene027952.t1 | MTR_2g451350 | 43.103 | 58 | 33 | 0 | 452 | 509 | 35 | 92 | 4.01e-11 | 60.8 |
MS.gene027952.t1 | MTR_4g058970 | 34.694 | 98 | 56 | 2 | 176 | 265 | 28 | 125 | 5.64e-11 | 67.0 |
MS.gene027952.t1 | MTR_7g103340 | 36.937 | 111 | 64 | 2 | 161 | 268 | 51 | 158 | 5.87e-11 | 63.9 |
MS.gene027952.t1 | MTR_7g093430 | 31.250 | 128 | 85 | 1 | 148 | 272 | 129 | 256 | 9.73e-11 | 64.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene027952.t1 | AT5G46880 | 58.602 | 744 | 253 | 16 | 153 | 863 | 85 | 806 | 0.0 | 834 |
MS.gene027952.t1 | AT5G46880 | 58.602 | 744 | 253 | 16 | 153 | 863 | 85 | 806 | 0.0 | 834 |
MS.gene027952.t1 | AT5G46880 | 58.602 | 744 | 253 | 16 | 153 | 863 | 85 | 806 | 0.0 | 834 |
MS.gene027952.t1 | AT4G17710 | 50.927 | 701 | 265 | 10 | 165 | 863 | 80 | 703 | 0.0 | 659 |
MS.gene027952.t1 | AT4G04890 | 45.245 | 736 | 366 | 13 | 138 | 863 | 27 | 735 | 0.0 | 644 |
MS.gene027952.t1 | AT4G04890 | 45.245 | 736 | 366 | 13 | 138 | 863 | 27 | 735 | 0.0 | 644 |
MS.gene027952.t1 | AT1G05230 | 44.505 | 737 | 352 | 16 | 135 | 863 | 29 | 716 | 0.0 | 625 |
MS.gene027952.t1 | AT1G05230 | 44.505 | 737 | 352 | 16 | 135 | 863 | 29 | 716 | 0.0 | 625 |
MS.gene027952.t1 | AT1G05230 | 44.505 | 737 | 352 | 16 | 135 | 863 | 29 | 716 | 0.0 | 625 |
MS.gene027952.t1 | AT1G05230 | 44.505 | 737 | 352 | 16 | 135 | 863 | 29 | 716 | 0.0 | 625 |
MS.gene027952.t1 | AT1G05230 | 44.505 | 737 | 352 | 16 | 135 | 863 | 29 | 716 | 0.0 | 625 |
MS.gene027952.t1 | AT1G05230 | 44.505 | 737 | 352 | 16 | 135 | 863 | 29 | 716 | 0.0 | 625 |
MS.gene027952.t1 | AT1G05230 | 44.505 | 737 | 352 | 16 | 135 | 863 | 29 | 716 | 0.0 | 625 |
MS.gene027952.t1 | AT1G05230 | 44.505 | 737 | 352 | 16 | 135 | 863 | 29 | 716 | 0.0 | 625 |
MS.gene027952.t1 | AT1G05230 | 44.505 | 737 | 352 | 16 | 135 | 863 | 29 | 716 | 0.0 | 625 |
MS.gene027952.t1 | AT1G05230 | 44.505 | 737 | 352 | 16 | 135 | 863 | 29 | 716 | 0.0 | 625 |
MS.gene027952.t1 | AT1G05230 | 44.233 | 737 | 352 | 16 | 135 | 863 | 29 | 714 | 0.0 | 621 |
MS.gene027952.t1 | AT4G21750 | 43.586 | 764 | 374 | 15 | 139 | 866 | 19 | 761 | 0.0 | 619 |
MS.gene027952.t1 | AT4G21750 | 43.586 | 764 | 374 | 15 | 139 | 866 | 19 | 761 | 0.0 | 619 |
MS.gene027952.t1 | AT4G21750 | 43.586 | 764 | 374 | 15 | 139 | 866 | 19 | 761 | 0.0 | 619 |
MS.gene027952.t1 | AT4G21750 | 43.586 | 764 | 374 | 15 | 139 | 866 | 19 | 761 | 0.0 | 619 |
MS.gene027952.t1 | AT1G73360 | 46.208 | 712 | 344 | 15 | 173 | 869 | 32 | 719 | 0.0 | 597 |
MS.gene027952.t1 | AT4G00730 | 42.391 | 736 | 373 | 16 | 139 | 863 | 103 | 798 | 0.0 | 573 |
MS.gene027952.t1 | AT1G17920 | 44.398 | 723 | 336 | 17 | 159 | 863 | 7 | 681 | 0.0 | 573 |
MS.gene027952.t1 | AT1G17920 | 44.398 | 723 | 336 | 17 | 159 | 863 | 7 | 681 | 0.0 | 573 |
MS.gene027952.t1 | AT3G61150 | 40.591 | 744 | 390 | 16 | 147 | 863 | 85 | 803 | 0.0 | 553 |
MS.gene027952.t1 | AT1G05230 | 46.141 | 609 | 288 | 13 | 135 | 735 | 29 | 605 | 0.0 | 541 |
MS.gene027952.t1 | AT2G32370 | 38.289 | 713 | 382 | 15 | 159 | 860 | 52 | 717 | 6.90e-155 | 472 |
MS.gene027952.t1 | AT5G52170 | 38.986 | 690 | 346 | 18 | 177 | 863 | 61 | 678 | 2.91e-154 | 469 |
MS.gene027952.t1 | AT5G52170 | 38.986 | 690 | 346 | 18 | 177 | 863 | 61 | 678 | 2.91e-154 | 469 |
MS.gene027952.t1 | AT5G52170 | 38.728 | 692 | 350 | 18 | 177 | 863 | 61 | 683 | 3.98e-154 | 469 |
MS.gene027952.t1 | AT1G79840 | 38.122 | 703 | 362 | 17 | 173 | 863 | 43 | 684 | 4.95e-148 | 453 |
MS.gene027952.t1 | AT1G79840 | 38.122 | 703 | 362 | 17 | 173 | 863 | 43 | 684 | 4.95e-148 | 453 |
MS.gene027952.t1 | AT1G79840 | 38.122 | 703 | 362 | 17 | 173 | 863 | 101 | 742 | 1.64e-147 | 454 |
MS.gene027952.t1 | AT1G79840 | 38.122 | 703 | 362 | 17 | 173 | 863 | 130 | 771 | 1.28e-146 | 452 |
MS.gene027952.t1 | AT3G03260 | 35.493 | 741 | 409 | 19 | 145 | 863 | 1 | 694 | 3.99e-135 | 420 |
MS.gene027952.t1 | AT4G00730 | 45.397 | 478 | 226 | 10 | 139 | 608 | 103 | 553 | 2.24e-134 | 414 |
MS.gene027952.t1 | AT5G17320 | 34.270 | 747 | 415 | 21 | 156 | 863 | 6 | 715 | 6.71e-125 | 394 |
MS.gene027952.t1 | AT1G79840 | 38.448 | 567 | 292 | 13 | 173 | 729 | 101 | 620 | 2.78e-121 | 381 |
MS.gene027952.t1 | AT1G34650 | 34.525 | 727 | 412 | 24 | 168 | 863 | 12 | 705 | 2.44e-113 | 363 |
MS.gene027952.t1 | AT4G25530 | 31.215 | 708 | 417 | 13 | 167 | 863 | 34 | 682 | 2.41e-111 | 357 |
MS.gene027952.t1 | AT3G03260 | 36.861 | 567 | 321 | 14 | 145 | 702 | 1 | 539 | 4.65e-109 | 346 |
MS.gene027952.t1 | AT1G79840 | 40.227 | 440 | 213 | 11 | 173 | 607 | 101 | 495 | 4.07e-92 | 301 |
MS.gene027952.t1 | AT5G07260 | 25.464 | 593 | 351 | 19 | 238 | 820 | 9 | 520 | 9.60e-39 | 152 |
MS.gene027952.t1 | AT5G07260 | 25.295 | 593 | 347 | 20 | 238 | 820 | 9 | 515 | 4.09e-38 | 150 |
MS.gene027952.t1 | AT4G26920 | 25.431 | 232 | 152 | 10 | 381 | 607 | 74 | 289 | 1.88e-11 | 67.8 |
MS.gene027952.t1 | AT5G60690 | 35.714 | 98 | 55 | 2 | 176 | 265 | 25 | 122 | 3.53e-11 | 67.8 |
Find 224 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AATTAAATTGAGGGCAATTT+TGG | 0.167870 | 5.2:-20020050 | None:intergenic |
AGAGGACCTCCTGCAGTATT+TGG | 0.191744 | 5.2:-20044895 | None:intergenic |
AGAGATACGCTTCCATTTCT+TGG | 0.195781 | 5.2:-20029372 | None:intergenic |
TTCAGTCTTTGTTTATCATC+TGG | 0.234084 | 5.2:-20029712 | None:intergenic |
ATGTATAATGGGACCTGATA+TGG | 0.242844 | 5.2:+20042762 | MS.gene027952:CDS |
AGAGGGTGGTCTCTTATTAA+TGG | 0.264546 | 5.2:+20043878 | MS.gene027952:CDS |
GAGGAGAAGGGAAGGAGAAT+TGG | 0.268198 | 5.2:+20019973 | MS.gene027952:CDS |
ATTATAGCTTCAGGTGCTTC+TGG | 0.293148 | 5.2:+20044333 | MS.gene027952:CDS |
CAGATGGATGCACTTTCTAA+TGG | 0.294055 | 5.2:+20045743 | MS.gene027952:intron |
CATAGTTACTAAATATTTGA+TGG | 0.294552 | 5.2:-20045092 | None:intergenic |
ATCAAGCTCTTTCGCGCTTC+CGG | 0.296499 | 5.2:-20045311 | None:intergenic |
GAGAGGTAAAGAAGAGATAA+TGG | 0.313794 | 5.2:+20029231 | MS.gene027952:CDS |
GGAACTTGCAGCTTCTTCTA+TGG | 0.317436 | 5.2:+20043923 | MS.gene027952:CDS |
CACCACAAGTGGTCATATTA+AGG | 0.319412 | 5.2:-20045367 | None:intergenic |
ACTGAAACTAAGCCATGATT+TGG | 0.329620 | 5.2:+20029729 | MS.gene027952:CDS |
GCTTGATGAAATTAGCAAAT+AGG | 0.352169 | 5.2:+20045327 | MS.gene027952:CDS |
AGGAGAAGGGAAGGAGAATT+GGG | 0.359913 | 5.2:+20019974 | MS.gene027952:CDS |
TTGTGGTGGGCCATGTATAA+TGG | 0.362098 | 5.2:+20042750 | MS.gene027952:CDS |
CTCAGGTTGTCTTCTTATCA+TGG | 0.367340 | 5.2:+20046189 | MS.gene027952:CDS |
CCAACTTTGGAACTGGTTGT+TGG | 0.389586 | 5.2:+20019869 | MS.gene027952:CDS |
ATACATGGCCCACCACAATT+AGG | 0.390584 | 5.2:-20042745 | None:intergenic |
ATAATGGATCAAAGTGGTTC+AGG | 0.391002 | 5.2:+20029247 | MS.gene027952:CDS |
TCAGTCTTTGTTTATCATCT+GGG | 0.391749 | 5.2:-20029711 | None:intergenic |
ACTAACAGCAATTGCTTTGT+TGG | 0.392291 | 5.2:+20046331 | MS.gene027952:CDS |
AGATGGATGCACTTTCTAAT+GGG | 0.399022 | 5.2:+20045744 | MS.gene027952:intron |
ACTGTTCAAATTATAGCTTC+AGG | 0.399428 | 5.2:+20044324 | MS.gene027952:CDS |
CTCTTTCGCGCTTCCGGAGA+AGG | 0.400542 | 5.2:-20045305 | None:intergenic |
GGTGGAGAATGACAAATCTA+TGG | 0.406430 | 5.2:+20020427 | MS.gene027952:CDS |
TTGGCCAACAACAAAATGTA+AGG | 0.407250 | 5.2:-20020031 | None:intergenic |
ATGGTGGTGGTGCCATTGTT+TGG | 0.412301 | 5.2:-20043734 | None:intergenic |
GTGATTCTAACGGTGTCTTC+TGG | 0.415111 | 5.2:-20045419 | None:intergenic |
GGTGGAGAATGACAAATCTA+TGG | 0.418849 | 5.2:+20020460 | MS.gene027952:CDS |
GTCGCGGTGGTTGTCTTCGT+CGG | 0.421622 | 5.2:+20019920 | MS.gene027952:CDS |
AATTATATGCAGTTTGTTCA+AGG | 0.423365 | 5.2:+20029678 | MS.gene027952:intron |
ATCACTCCACTGGGTTGGCC+AGG | 0.423809 | 5.2:-20045461 | None:intergenic |
GAGGACCTCCTGCAGTATTT+GGG | 0.424936 | 5.2:-20044894 | None:intergenic |
GACAAGGAGTGCACACTACT+TGG | 0.425308 | 5.2:-20046386 | None:intergenic |
CTAACAGCAATTGCTTTGTT+GGG | 0.426498 | 5.2:+20046332 | MS.gene027952:CDS |
ATCTCTTATGCCACCATCAC+TGG | 0.427634 | 5.2:+20043755 | MS.gene027952:CDS |
TATTGCTAACGGTTCACATC+CGG | 0.428988 | 5.2:+20045790 | MS.gene027952:CDS |
CAAATTGAAGGTGCTCTTTG+TGG | 0.429451 | 5.2:+20046304 | MS.gene027952:CDS |
TCTTGAAAATGTGAAGGTTC+AGG | 0.429683 | 5.2:-20043858 | None:intergenic |
GTCAAATGAACGGACCGCTT+TGG | 0.431441 | 5.2:+20043964 | MS.gene027952:CDS |
TGTACCCTTGAATAGCCATT+TGG | 0.431448 | 5.2:-20044939 | None:intergenic |
TTACTAAATATTTGATGGAC+TGG | 0.435592 | 5.2:-20045087 | None:intergenic |
TTTGGTGCACAACGTTGGTT+AGG | 0.436385 | 5.2:+20045132 | MS.gene027952:CDS |
AAAAGGCCGGGACGGAGAGA+AGG | 0.438701 | 5.2:+20019944 | MS.gene027952:CDS |
AGAAGGGAAATGCAGTTTCC+CGG | 0.438847 | 5.2:-20045809 | None:intergenic |
AAGACTTTGGTATGAGGATA+AGG | 0.441439 | 5.2:-20045512 | None:intergenic |
AACTTACATTTATGCGAAGA+AGG | 0.441914 | 5.2:-20045826 | None:intergenic |
TGGTTGTCTTCGTCGGGAAA+AGG | 0.443030 | 5.2:+20019927 | MS.gene027952:CDS |
TGATCATCAAAGCCCATATC+AGG | 0.443548 | 5.2:-20042775 | None:intergenic |
TGCTCGTCAGATCCAAGAAA+TGG | 0.444102 | 5.2:+20029360 | MS.gene027952:CDS |
GATTGCAGTGATACCTTCTC+CGG | 0.445102 | 5.2:+20045292 | MS.gene027952:intron |
TTTAGTAACTATGTGTATAG+TGG | 0.445206 | 5.2:+20045102 | MS.gene027952:CDS |
TTTGAACAGAAAGAAGAAGA+AGG | 0.446907 | 5.2:+20029202 | MS.gene027952:intron |
CTTGCCCTAGCAACAATAGT+TGG | 0.448200 | 5.2:-20044300 | None:intergenic |
GTTTGAAGAATGAGAACTAT+AGG | 0.449425 | 5.2:+20042692 | MS.gene027952:CDS |
TTCGTAGCGGTGAGAATGAT+AGG | 0.451667 | 5.2:+20043988 | MS.gene027952:CDS |
GGCGATGAGAGGAGAAGGGA+AGG | 0.453108 | 5.2:+20019965 | MS.gene027952:CDS |
CCACCACCGCATAAGCAGAT+TGG | 0.453149 | 5.2:-20020409 | None:intergenic |
GCTAGAAACATATCAGATCT+TGG | 0.453635 | 5.2:+20045195 | MS.gene027952:CDS |
ACAATCATGGACTGCTATAT+CGG | 0.455597 | 5.2:+20045391 | MS.gene027952:CDS |
ATTCCAAGTTCTTTCTCCAT+TGG | 0.455604 | 5.2:+20044755 | MS.gene027952:CDS |
GGGAGAACCAACTTTGGAAC+TGG | 0.459012 | 5.2:+20019862 | MS.gene027952:CDS |
CCGAAGAAAATGAGTCTCTC+TGG | 0.461082 | 5.2:-20044784 | None:intergenic |
TTCCTTTGCTTAAGATTCAA+AGG | 0.462942 | 5.2:-20044053 | None:intergenic |
AAATACTGCAGGAGGTCCTC+TGG | 0.464331 | 5.2:+20044897 | MS.gene027952:CDS |
TGTGGTGGGCCATGTATAAT+GGG | 0.465808 | 5.2:+20042751 | MS.gene027952:CDS |
TCGCGGTGGTTGTCTTCGTC+GGG | 0.466316 | 5.2:+20019921 | MS.gene027952:CDS |
CTGAAACTAAGCCATGATTT+GGG | 0.466763 | 5.2:+20029730 | MS.gene027952:CDS |
GTTTCCAACTATTGTTGCTA+GGG | 0.472521 | 5.2:+20044296 | MS.gene027952:CDS |
GAACAAGTTGAAGATAAGTC+AGG | 0.474547 | 5.2:+20029274 | MS.gene027952:CDS |
TGTTTCCAACTATTGTTGCT+AGG | 0.475872 | 5.2:+20044295 | MS.gene027952:CDS |
AACCACGCCAGGTTAAGTTC+TGG | 0.478239 | 5.2:+20029758 | MS.gene027952:CDS |
GTGGTTTCAGTCCCAAATCA+TGG | 0.480470 | 5.2:-20029741 | None:intergenic |
GGCGAAGGTACCGCGAGGAC+AGG | 0.481369 | 5.2:-20019897 | None:intergenic |
ATTTCTGTGCATGGTGGCAT+TGG | 0.482085 | 5.2:-20043813 | None:intergenic |
TGACGAACGCCACAGATCTC+AGG | 0.483891 | 5.2:+20045547 | MS.gene027952:CDS |
AATGGCCCAGGTTCCTTCCT+CGG | 0.487016 | 5.2:-20044823 | None:intergenic |
GAGCACCTTCAATTTGATGC+AGG | 0.487171 | 5.2:-20046297 | None:intergenic |
AATTATGTATGCAGGTAACA+TGG | 0.487587 | 5.2:+20045037 | MS.gene027952:intron |
TGTATAATGGGACCTGATAT+GGG | 0.487914 | 5.2:+20042763 | MS.gene027952:CDS |
CGCACGATACCCGTATCATC+TGG | 0.488697 | 5.2:+20020298 | MS.gene027952:CDS |
TGTCTTCGTCGGGAAAAGGC+CGG | 0.489855 | 5.2:+20019931 | MS.gene027952:CDS |
GTCTTCGTCGGGAAAAGGCC+GGG | 0.493132 | 5.2:+20019932 | MS.gene027952:CDS |
ACATGCCAAATGGCTATTCA+AGG | 0.495938 | 5.2:+20044934 | MS.gene027952:CDS |
AGATGAGAAATCACTTGCTA+TGG | 0.496183 | 5.2:+20043902 | MS.gene027952:CDS |
CCAATCTGCTTATGCGGTGG+TGG | 0.496605 | 5.2:+20020409 | MS.gene027952:CDS |
CTTTGTTTATCATCTGGGTG+TGG | 0.497200 | 5.2:-20029706 | None:intergenic |
ATACCAATGGAGAAAGAACT+TGG | 0.497986 | 5.2:-20044758 | None:intergenic |
AAGCAGATTGGCTTCGTGGC+TGG | 0.498434 | 5.2:-20020397 | None:intergenic |
GCATAAGCAGATTGGCTTCG+TGG | 0.498844 | 5.2:-20020401 | None:intergenic |
GAGAGTTGCACAGATCAATC+TGG | 0.500290 | 5.2:+20045974 | MS.gene027952:CDS |
ATAAAGCTCACCAGATGATA+CGG | 0.500441 | 5.2:-20020308 | None:intergenic |
TTGGAGGGTGCACTAGTGGT+TGG | 0.501171 | 5.2:-20046367 | None:intergenic |
AATACCCTGCATCAAATTGA+AGG | 0.504038 | 5.2:+20046292 | MS.gene027952:CDS |
GAGAAGGCGATGAGAGGAGA+AGG | 0.504365 | 5.2:+20019960 | MS.gene027952:CDS |
CCAACAACCAGTTCCAAAGT+TGG | 0.505249 | 5.2:-20019869 | None:intergenic |
TCGCCGCAGTTTCAACCACT+TGG | 0.506037 | 5.2:+20045486 | MS.gene027952:CDS |
GTGTATAGTGGAATGGCATT+TGG | 0.507399 | 5.2:+20045114 | MS.gene027952:CDS |
CACGACAGTCGATGTTGATT+CGG | 0.508112 | 5.2:+20046012 | MS.gene027952:CDS |
TGCGGCGAGAATCACTCCAC+TGG | 0.516058 | 5.2:-20045471 | None:intergenic |
CTTGTCCACTCATAGCTAGT+TGG | 0.519744 | 5.2:-20046036 | None:intergenic |
GGTGCTTCTGGCCATGCAAG+TGG | 0.520606 | 5.2:+20044345 | MS.gene027952:CDS |
ATTGCTAACGGTTCACATCC+GGG | 0.521364 | 5.2:+20045791 | MS.gene027952:CDS |
CCACTTGTGGTGGACAATCA+TGG | 0.523426 | 5.2:+20045378 | MS.gene027952:CDS |
GAAGGTTCAGGTGGTAACAT+AGG | 0.523574 | 5.2:-20043846 | None:intergenic |
GAATTGGGAAAGAGAAGTGA+GGG | 0.529551 | 5.2:+20019989 | MS.gene027952:CDS |
ACAACCTGAGTTAGCAGCAT+TGG | 0.530947 | 5.2:-20046176 | None:intergenic |
TGCAAGTGGGACTCTTCAGC+TGG | 0.531576 | 5.2:+20044359 | MS.gene027952:CDS |
TCAGGTTGTCTTCTTATCAT+GGG | 0.533492 | 5.2:+20046190 | MS.gene027952:CDS |
ACTAGGAAAATCACTGAGCC+TGG | 0.535391 | 5.2:+20045443 | MS.gene027952:CDS |
AGAAGGCGATGAGAGGAGAA+GGG | 0.536558 | 5.2:+20019961 | MS.gene027952:CDS |
AAAATGCCGAGGAAGGAACC+TGG | 0.537052 | 5.2:+20044817 | MS.gene027952:CDS |
CTACTTGGAGGGTGCACTAG+TGG | 0.538012 | 5.2:-20046371 | None:intergenic |
AACTTCGATTTGAAAATGCC+CGG | 0.538277 | 5.2:+20042800 | MS.gene027952:CDS |
AGGAAAATCAACAATGGCCC+AGG | 0.539512 | 5.2:-20044835 | None:intergenic |
AGATCAAAGACTTTGGTATG+AGG | 0.540751 | 5.2:-20045518 | None:intergenic |
GGCCTTTGAATCTTAAGCAA+AGG | 0.541375 | 5.2:+20044051 | MS.gene027952:CDS |
TCAGGTGGTAACATAGGGAC+AGG | 0.544013 | 5.2:-20043840 | None:intergenic |
TCATCTGAACAAGGTGTCAC+AGG | 0.545128 | 5.2:+20046130 | MS.gene027952:CDS |
AGCCTTAATATGACCACTTG+TGG | 0.546867 | 5.2:+20045365 | MS.gene027952:CDS |
ATTCTTGTCCCAAATACTGC+AGG | 0.549607 | 5.2:+20044886 | MS.gene027952:CDS |
AAGGAGTGCACACTACTTGG+AGG | 0.551266 | 5.2:-20046383 | None:intergenic |
ACTTACATTTATGCGAAGAA+GGG | 0.551867 | 5.2:-20045825 | None:intergenic |
TGGGAACTCATTAAATGAAG+TGG | 0.552199 | 5.2:+20045763 | MS.gene027952:CDS |
AAGGTTCAGGTGGTAACATA+GGG | 0.552742 | 5.2:-20043845 | None:intergenic |
TTTGGGACTGAAACCACGCC+AGG | 0.553427 | 5.2:+20029747 | MS.gene027952:CDS |
TGAGAACTATAGGCTACAAT+CGG | 0.553444 | 5.2:+20042702 | MS.gene027952:CDS |
TAACTATGTGTATAGTGGAA+TGG | 0.553607 | 5.2:+20045107 | MS.gene027952:CDS |
GGCATTGGATCGAAGTGCCT+CGG | 0.554413 | 5.2:-20043798 | None:intergenic |
TTTCCTAGTTGTGATTCTAA+CGG | 0.554507 | 5.2:-20045429 | None:intergenic |
ACGAAGGAGATCAAAGACTT+TGG | 0.555409 | 5.2:-20045525 | None:intergenic |
GAAGAAGAAGGAATATTGAG+AGG | 0.555846 | 5.2:+20029214 | MS.gene027952:CDS |
TTTGCAGAGGCAATGTGAAA+GGG | 0.557444 | 5.2:+20045158 | MS.gene027952:CDS |
GACAACCACCGCGACGGCGA+AGG | 0.558056 | 5.2:-20019912 | None:intergenic |
GACGGAGAGAAGGCGATGAG+AGG | 0.560245 | 5.2:+20019954 | MS.gene027952:CDS |
AGCACCTTCAATTTGATGCA+GGG | 0.561062 | 5.2:-20046296 | None:intergenic |
TCAGCATTTGATGAAACCAT+TGG | 0.561093 | 5.2:-20046103 | None:intergenic |
TGCATTGCACTTCTTCCACA+AGG | 0.562490 | 5.2:+20046067 | MS.gene027952:CDS |
AGGGATGGGAGAACCAACTT+TGG | 0.566314 | 5.2:+20019856 | None:intergenic |
AGGGTTCATGATAGTGCCAA+TGG | 0.566530 | 5.2:+20046087 | MS.gene027952:CDS |
TGGCCAACAACAAAATGTAA+GGG | 0.566787 | 5.2:-20020030 | None:intergenic |
GTGCTTCTGGCCATGCAAGT+GGG | 0.568255 | 5.2:+20044346 | MS.gene027952:CDS |
GAAAGGTTAAGCTTTGCAGA+AGG | 0.572294 | 5.2:-20046238 | None:intergenic |
AGAATTGGGAAAGAGAAGTG+AGG | 0.574130 | 5.2:+20019988 | MS.gene027952:CDS |
AGTGCCAATGCTGCTAACTC+AGG | 0.574318 | 5.2:+20046172 | MS.gene027952:CDS |
ACAGGAATCATTTCTGTGCA+TGG | 0.575428 | 5.2:-20043822 | None:intergenic |
CGAGAATCACTCCACTGGGT+TGG | 0.576021 | 5.2:-20045466 | None:intergenic |
AACCAGAACTTAACCTGGCG+TGG | 0.579376 | 5.2:-20029760 | None:intergenic |
GTCTCTCTGGTGGATACCAA+TGG | 0.579467 | 5.2:-20044771 | None:intergenic |
GAAGTGGCTCATATTGCTAA+CGG | 0.583975 | 5.2:+20045779 | MS.gene027952:CDS |
GCTGAAGAGTCCCACTTGCA+TGG | 0.585312 | 5.2:-20044356 | None:intergenic |
GAATCGTCGAACTCAGATGA+AGG | 0.585722 | 5.2:+20029786 | MS.gene027952:CDS |
ATATCAGGTCCCATTATACA+TGG | 0.589693 | 5.2:-20042760 | None:intergenic |
GGTGGTGCCATTGTTTGGAG+TGG | 0.590059 | 5.2:-20043729 | None:intergenic |
CCATGATTGTCCACCACAAG+TGG | 0.590603 | 5.2:-20045378 | None:intergenic |
GACGAAGACAACCACCGCGA+CGG | 0.591071 | 5.2:-20019918 | None:intergenic |
TGTCAGCAAAATGCCGAGGA+AGG | 0.592338 | 5.2:+20044810 | MS.gene027952:CDS |
ATTATGTATGCAGGTAACAT+GGG | 0.592654 | 5.2:+20045038 | MS.gene027952:intron |
TGAAAGGGTTGCAAGCCTCA+TGG | 0.593187 | 5.2:+20045173 | MS.gene027952:CDS |
TCATCGCCTTCTCTCCGTCC+CGG | 0.596008 | 5.2:-20019950 | None:intergenic |
AAATGCCGAGGAAGGAACCT+GGG | 0.596467 | 5.2:+20044818 | MS.gene027952:CDS |
ATCTGTGGCGTTCGTCACGA+AGG | 0.596909 | 5.2:-20045541 | None:intergenic |
TCGTCGGGAAAAGGCCGGGA+CGG | 0.598701 | 5.2:+20019936 | MS.gene027952:CDS |
ATGTCTAAGTCCAGTGATGG+TGG | 0.600221 | 5.2:-20043765 | None:intergenic |
AAATGCCCGGTTAAAAGAAG+AGG | 0.603680 | 5.2:+20042813 | MS.gene027952:CDS |
GGCCAACAACAAAATGTAAG+GGG | 0.607045 | 5.2:-20020029 | None:intergenic |
ATTGAAGGTGCTCTTTGTGG+CGG | 0.608550 | 5.2:+20046307 | MS.gene027952:CDS |
TTGGCACTAGTAGTAGATGA+TGG | 0.610277 | 5.2:-20046157 | None:intergenic |
TTTGATGCAGGGTATTGCAA+AGG | 0.610933 | 5.2:-20046285 | None:intergenic |
ATCTATGGACATACACGTGG+TGG | 0.611686 | 5.2:+20020442 | MS.gene027952:CDS |
TGATTGCTGTGACACTTGAA+AGG | 0.612049 | 5.2:-20046255 | None:intergenic |
CTTAATATGACCACTTGTGG+TGG | 0.613209 | 5.2:+20045368 | MS.gene027952:CDS |
TCGTAGCGGTGAGAATGATA+GGG | 0.616366 | 5.2:+20043989 | MS.gene027952:CDS |
TGGCATTTGGTGCACAACGT+TGG | 0.617325 | 5.2:+20045127 | MS.gene027952:CDS |
ATGCCACATGGTGTACAAAG+TGG | 0.618375 | 5.2:+20020081 | MS.gene027952:CDS |
TAAAGCTCACCAGATGATAC+GGG | 0.618738 | 5.2:-20020307 | None:intergenic |
GGCACTATCATGAACCCTTG+TGG | 0.620159 | 5.2:-20046082 | None:intergenic |
AGGAGTGCACACTACTTGGA+GGG | 0.620960 | 5.2:-20046382 | None:intergenic |
CATGCCAAATGGCTATTCAA+GGG | 0.621111 | 5.2:+20044935 | MS.gene027952:CDS |
TTAAGCAAAGGAATGAGTTG+AGG | 0.624294 | 5.2:+20044063 | MS.gene027952:CDS |
GTTAAGATGTGTCAAATGAA+CGG | 0.624392 | 5.2:+20043954 | MS.gene027952:CDS |
GTGATTCAAGACATGCCAAA+TGG | 0.625125 | 5.2:+20044924 | MS.gene027952:CDS |
AAGAAAATGAGTCTCTCTGG+TGG | 0.626409 | 5.2:-20044781 | None:intergenic |
CGGTACCTTCGCCGTCGCGG+TGG | 0.627325 | 5.2:+20019907 | MS.gene027952:CDS |
TCGCGGTACCTTCGCCGTCG+CGG | 0.629094 | 5.2:+20019904 | MS.gene027952:CDS |
TCTGAAACCAGAACTTAACC+TGG | 0.629926 | 5.2:-20029765 | None:intergenic |
TGAAAATGTGAAGGTTCAGG+TGG | 0.630308 | 5.2:-20043855 | None:intergenic |
TGGTCGTCCACTCCAAACAA+TGG | 0.632170 | 5.2:+20043722 | MS.gene027952:CDS |
ACGAAGCCAATCTGCTTATG+CGG | 0.633487 | 5.2:+20020403 | MS.gene027952:CDS |
GCGGCGAGAATCACTCCACT+GGG | 0.633627 | 5.2:-20045470 | None:intergenic |
CTTGTCCCAAATACTGCAGG+AGG | 0.633782 | 5.2:+20044889 | MS.gene027952:CDS |
CCACCCTCTTGAAAATGTGA+AGG | 0.635356 | 5.2:-20043864 | None:intergenic |
TGTATAACATCAAGATACAC+TGG | 0.638243 | 5.2:+20043702 | MS.gene027952:CDS |
CTGATATGTTTCTAGCCATG+AGG | 0.641439 | 5.2:-20045188 | None:intergenic |
AGAAACATATCAGATCTTGG+AGG | 0.641979 | 5.2:+20045198 | MS.gene027952:CDS |
AAGCCAATCTGCTTATGCGG+TGG | 0.642074 | 5.2:+20020406 | MS.gene027952:CDS |
TCGGTCCAACTAGCTATGAG+TGG | 0.646383 | 5.2:+20046031 | MS.gene027952:CDS |
GGAAGAAGTGCAATGCATGA+AGG | 0.647602 | 5.2:-20046061 | None:intergenic |
ACACCGTTAGAATCACAACT+AGG | 0.649395 | 5.2:+20045426 | MS.gene027952:CDS |
GTTGGACTGTCCTGTCCTCG+CGG | 0.654522 | 5.2:+20019887 | MS.gene027952:CDS |
AAGCCAAGTGGTTGAAACTG+CGG | 0.657898 | 5.2:-20045489 | None:intergenic |
GCATTGCACTTCTTCCACAA+GGG | 0.658072 | 5.2:+20046068 | MS.gene027952:CDS |
ATCAACAGGAAAATCAACAA+TGG | 0.660991 | 5.2:-20044841 | None:intergenic |
ACTGAGCCTGGCCAACCCAG+TGG | 0.663353 | 5.2:+20045455 | MS.gene027952:CDS |
GAAGAGATAATGGATCAAAG+TGG | 0.668091 | 5.2:+20029241 | MS.gene027952:CDS |
TAGACATGAACATTTATCCG+AGG | 0.669126 | 5.2:+20043781 | MS.gene027952:CDS |
GTCTTGAATCACACAGCCAG+AGG | 0.672117 | 5.2:-20044913 | None:intergenic |
GCTGATACATCATCTGAACA+AGG | 0.673597 | 5.2:+20046121 | MS.gene027952:CDS |
TTCATGTCTAAGTCCAGTGA+TGG | 0.677862 | 5.2:-20043768 | None:intergenic |
CAAATCTATGGACATACACG+TGG | 0.682131 | 5.2:+20020439 | MS.gene027952:CDS |
AGTGATGGTGGCATAAGAGA+TGG | 0.687053 | 5.2:-20043753 | None:intergenic |
GGAATCATTTCTGTGCATGG+TGG | 0.700338 | 5.2:-20043819 | None:intergenic |
GATGGTGGCATAAGAGATGG+TGG | 0.704606 | 5.2:-20043750 | None:intergenic |
ATACCACTTTGTACACCATG+TGG | 0.712277 | 5.2:-20020084 | None:intergenic |
TCTGTGGTACCTGAGATCTG+TGG | 0.717292 | 5.2:-20045556 | None:intergenic |
GGTGGCATAAGAGATGGTGG+TGG | 0.719463 | 5.2:-20043747 | None:intergenic |
GGACCGCTTTGGATTCGTAG+CGG | 0.720865 | 5.2:+20043975 | MS.gene027952:CDS |
GTATTGTCAGCAAAATGCCG+AGG | 0.721851 | 5.2:+20044806 | MS.gene027952:CDS |
ATGAGGATAAGGAAGCCAAG+TGG | 0.750424 | 5.2:-20045501 | None:intergenic |
TCACCGCTACGAATCCAAAG+CGG | 0.768262 | 5.2:-20043978 | None:intergenic |
GCGACGGCGAAGGTACCGCG+AGG | 0.786524 | 5.2:-20019902 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.2 | gene | 20019860 | 20046393 | 20019860 | ID=MS.gene027952 |
chr5.2 | mRNA | 20019860 | 20046393 | 20019860 | ID=MS.gene027952.t1;Parent=MS.gene027952 |
chr5.2 | exon | 20019860 | 20020102 | 20019860 | ID=MS.gene027952.t1.exon1;Parent=MS.gene027952.t1 |
chr5.2 | CDS | 20019860 | 20020102 | 20019860 | ID=cds.MS.gene027952.t1;Parent=MS.gene027952.t1 |
chr5.2 | exon | 20020281 | 20020319 | 20020281 | ID=MS.gene027952.t1.exon2;Parent=MS.gene027952.t1 |
chr5.2 | CDS | 20020281 | 20020319 | 20020281 | ID=cds.MS.gene027952.t1;Parent=MS.gene027952.t1 |
chr5.2 | exon | 20020380 | 20020490 | 20020380 | ID=MS.gene027952.t1.exon3;Parent=MS.gene027952.t1 |
chr5.2 | CDS | 20020380 | 20020490 | 20020380 | ID=cds.MS.gene027952.t1;Parent=MS.gene027952.t1 |
chr5.2 | exon | 20029211 | 20029386 | 20029211 | ID=MS.gene027952.t1.exon4;Parent=MS.gene027952.t1 |
chr5.2 | CDS | 20029211 | 20029386 | 20029211 | ID=cds.MS.gene027952.t1;Parent=MS.gene027952.t1 |
chr5.2 | exon | 20029690 | 20029807 | 20029690 | ID=MS.gene027952.t1.exon5;Parent=MS.gene027952.t1 |
chr5.2 | CDS | 20029690 | 20029807 | 20029690 | ID=cds.MS.gene027952.t1;Parent=MS.gene027952.t1 |
chr5.2 | exon | 20042643 | 20042834 | 20042643 | ID=MS.gene027952.t1.exon6;Parent=MS.gene027952.t1 |
chr5.2 | CDS | 20042643 | 20042834 | 20042643 | ID=cds.MS.gene027952.t1;Parent=MS.gene027952.t1 |
chr5.2 | exon | 20043687 | 20044157 | 20043687 | ID=MS.gene027952.t1.exon7;Parent=MS.gene027952.t1 |
chr5.2 | CDS | 20043687 | 20044157 | 20043687 | ID=cds.MS.gene027952.t1;Parent=MS.gene027952.t1 |
chr5.2 | exon | 20044279 | 20044380 | 20044279 | ID=MS.gene027952.t1.exon8;Parent=MS.gene027952.t1 |
chr5.2 | CDS | 20044279 | 20044380 | 20044279 | ID=cds.MS.gene027952.t1;Parent=MS.gene027952.t1 |
chr5.2 | exon | 20044744 | 20044956 | 20044744 | ID=MS.gene027952.t1.exon9;Parent=MS.gene027952.t1 |
chr5.2 | CDS | 20044744 | 20044956 | 20044744 | ID=cds.MS.gene027952.t1;Parent=MS.gene027952.t1 |
chr5.2 | exon | 20045051 | 20045219 | 20045051 | ID=MS.gene027952.t1.exon10;Parent=MS.gene027952.t1 |
chr5.2 | CDS | 20045051 | 20045219 | 20045051 | ID=cds.MS.gene027952.t1;Parent=MS.gene027952.t1 |
chr5.2 | exon | 20045300 | 20045568 | 20045300 | ID=MS.gene027952.t1.exon11;Parent=MS.gene027952.t1 |
chr5.2 | CDS | 20045300 | 20045568 | 20045300 | ID=cds.MS.gene027952.t1;Parent=MS.gene027952.t1 |
chr5.2 | exon | 20045746 | 20045841 | 20045746 | ID=MS.gene027952.t1.exon12;Parent=MS.gene027952.t1 |
chr5.2 | CDS | 20045746 | 20045841 | 20045746 | ID=cds.MS.gene027952.t1;Parent=MS.gene027952.t1 |
chr5.2 | exon | 20045932 | 20046393 | 20045932 | ID=MS.gene027952.t1.exon13;Parent=MS.gene027952.t1 |
chr5.2 | CDS | 20045932 | 20046393 | 20045932 | ID=cds.MS.gene027952.t1;Parent=MS.gene027952.t1 |
Gene Sequence |
Protein sequence |