Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene02796.t1 | XP_024631614.1 | 91.3 | 669 | 42 | 2 | 24 | 692 | 35 | 687 | 0.00E+00 | 1248.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene02796.t1 | Q9SSQ4 | 62.4 | 652 | 235 | 6 | 44 | 692 | 59 | 703 | 2.1e-243 | 843.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene02796.t1 | A0A396J867 | 91.3 | 669 | 42 | 2 | 24 | 692 | 35 | 687 | 0.0e+00 | 1248.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene02796.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene02796.t1 | MTR_6g051425 | 29.967 | 307 | 185 | 7 | 71 | 348 | 19 | 324 | 4.49e-33 | 130 |
| MS.gene02796.t1 | MTR_1g070355 | 27.848 | 237 | 157 | 7 | 74 | 299 | 79 | 312 | 1.62e-16 | 83.6 |
| MS.gene02796.t1 | MTR_4g067290 | 40.196 | 102 | 56 | 2 | 69 | 166 | 56 | 156 | 2.80e-14 | 73.6 |
| MS.gene02796.t1 | MTR_4g067290 | 40.196 | 102 | 56 | 2 | 69 | 166 | 56 | 156 | 3.07e-14 | 73.2 |
| MS.gene02796.t1 | MTR_4g067290 | 40.196 | 102 | 56 | 2 | 69 | 166 | 76 | 176 | 3.60e-14 | 73.6 |
| MS.gene02796.t1 | MTR_4g067290 | 40.196 | 102 | 56 | 2 | 69 | 166 | 76 | 176 | 3.65e-14 | 73.6 |
| MS.gene02796.t1 | MTR_4g067290 | 40.196 | 102 | 56 | 2 | 69 | 166 | 74 | 174 | 3.73e-14 | 73.6 |
| MS.gene02796.t1 | MTR_4g067290 | 40.196 | 102 | 56 | 2 | 69 | 166 | 116 | 216 | 6.19e-14 | 73.6 |
| MS.gene02796.t1 | MTR_2g098880 | 33.962 | 106 | 64 | 1 | 67 | 166 | 59 | 164 | 3.45e-13 | 70.5 |
| MS.gene02796.t1 | MTR_2g098880 | 33.962 | 106 | 64 | 1 | 67 | 166 | 71 | 176 | 4.37e-13 | 70.5 |
| MS.gene02796.t1 | MTR_2g098920 | 38.235 | 102 | 58 | 2 | 69 | 166 | 80 | 180 | 2.03e-12 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene02796.t1 | AT1G52520 | 60.756 | 688 | 254 | 10 | 12 | 692 | 25 | 703 | 0.0 | 858 |
| MS.gene02796.t1 | AT1G80010 | 45.510 | 657 | 331 | 12 | 52 | 690 | 76 | 723 | 0.0 | 567 |
| MS.gene02796.t1 | AT4G15090 | 33.589 | 652 | 406 | 9 | 48 | 687 | 30 | 666 | 1.65e-121 | 382 |
| MS.gene02796.t1 | AT4G15090 | 33.589 | 652 | 406 | 9 | 48 | 687 | 30 | 666 | 1.65e-121 | 382 |
| MS.gene02796.t1 | AT4G15090 | 33.589 | 652 | 406 | 9 | 48 | 687 | 30 | 666 | 1.65e-121 | 382 |
| MS.gene02796.t1 | AT4G15090 | 33.589 | 652 | 406 | 9 | 48 | 687 | 30 | 666 | 1.65e-121 | 382 |
| MS.gene02796.t1 | AT4G15090 | 33.589 | 652 | 406 | 9 | 48 | 687 | 30 | 666 | 1.65e-121 | 382 |
| MS.gene02796.t1 | AT3G22170 | 33.477 | 696 | 384 | 12 | 10 | 681 | 28 | 668 | 1.69e-121 | 382 |
| MS.gene02796.t1 | AT3G22170 | 33.477 | 696 | 384 | 12 | 10 | 681 | 28 | 668 | 1.69e-121 | 382 |
| MS.gene02796.t1 | AT1G76320 | 35.397 | 630 | 355 | 13 | 73 | 683 | 1 | 597 | 1.37e-110 | 349 |
| MS.gene02796.t1 | AT1G76320 | 35.238 | 630 | 356 | 12 | 73 | 683 | 1 | 597 | 3.33e-110 | 350 |
| MS.gene02796.t1 | AT1G76320 | 35.238 | 630 | 356 | 12 | 73 | 683 | 1 | 597 | 3.51e-110 | 350 |
| MS.gene02796.t1 | AT1G76320 | 35.238 | 630 | 356 | 12 | 73 | 683 | 1 | 597 | 3.51e-110 | 350 |
| MS.gene02796.t1 | AT4G19990 | 34.429 | 578 | 314 | 10 | 72 | 626 | 24 | 559 | 1.42e-95 | 312 |
| MS.gene02796.t1 | AT4G19990 | 34.429 | 578 | 314 | 10 | 72 | 626 | 24 | 559 | 1.42e-95 | 312 |
| MS.gene02796.t1 | AT4G19990 | 34.429 | 578 | 314 | 10 | 72 | 626 | 24 | 559 | 2.35e-95 | 311 |
| MS.gene02796.t1 | AT4G19990 | 34.429 | 578 | 314 | 10 | 72 | 626 | 38 | 573 | 2.92e-95 | 311 |
| MS.gene02796.t1 | AT4G19990 | 34.429 | 578 | 314 | 10 | 72 | 626 | 24 | 559 | 5.05e-95 | 311 |
| MS.gene02796.t1 | AT4G19990 | 34.429 | 578 | 314 | 10 | 72 | 626 | 24 | 559 | 5.05e-95 | 311 |
| MS.gene02796.t1 | AT4G38180 | 32.062 | 577 | 370 | 11 | 67 | 630 | 71 | 638 | 1.24e-92 | 305 |
| MS.gene02796.t1 | AT2G27110 | 30.047 | 639 | 407 | 14 | 55 | 690 | 40 | 641 | 2.00e-91 | 303 |
| MS.gene02796.t1 | AT2G27110 | 30.047 | 639 | 407 | 14 | 55 | 690 | 40 | 641 | 2.00e-91 | 303 |
| MS.gene02796.t1 | AT3G06250 | 30.096 | 628 | 390 | 13 | 55 | 680 | 176 | 756 | 7.23e-89 | 294 |
| MS.gene02796.t1 | AT3G06250 | 32.710 | 107 | 63 | 1 | 67 | 173 | 26 | 123 | 1.93e-12 | 71.2 |
| MS.gene02796.t1 | AT3G06250 | 30.096 | 628 | 390 | 13 | 55 | 680 | 176 | 756 | 7.23e-89 | 294 |
| MS.gene02796.t1 | AT3G06250 | 32.710 | 107 | 63 | 1 | 67 | 173 | 26 | 123 | 1.93e-12 | 71.2 |
| MS.gene02796.t1 | AT3G06250 | 30.096 | 628 | 390 | 13 | 55 | 680 | 176 | 756 | 7.23e-89 | 294 |
| MS.gene02796.t1 | AT3G06250 | 32.710 | 107 | 63 | 1 | 67 | 173 | 26 | 123 | 1.93e-12 | 71.2 |
| MS.gene02796.t1 | AT4G19990 | 35.400 | 500 | 277 | 7 | 132 | 626 | 44 | 502 | 7.92e-89 | 292 |
| MS.gene02796.t1 | AT5G18960 | 30.782 | 614 | 379 | 15 | 69 | 680 | 211 | 780 | 1.79e-86 | 288 |
| MS.gene02796.t1 | AT5G18960 | 30.782 | 614 | 379 | 15 | 69 | 680 | 211 | 780 | 1.79e-86 | 288 |
| MS.gene02796.t1 | AT2G27110 | 31.809 | 481 | 316 | 7 | 211 | 690 | 27 | 496 | 1.21e-83 | 279 |
| MS.gene02796.t1 | AT2G32250 | 34.234 | 444 | 265 | 9 | 246 | 681 | 180 | 604 | 3.28e-73 | 252 |
| MS.gene02796.t1 | AT2G32250 | 34.234 | 444 | 265 | 9 | 246 | 681 | 139 | 563 | 3.72e-73 | 252 |
| MS.gene02796.t1 | AT2G32250 | 34.234 | 444 | 265 | 9 | 246 | 681 | 139 | 563 | 3.77e-73 | 252 |
| MS.gene02796.t1 | AT2G32250 | 34.234 | 444 | 265 | 9 | 246 | 681 | 180 | 604 | 6.30e-73 | 252 |
| MS.gene02796.t1 | AT2G32250 | 34.234 | 444 | 265 | 9 | 246 | 681 | 180 | 604 | 6.30e-73 | 252 |
| MS.gene02796.t1 | AT2G32250 | 34.234 | 444 | 265 | 9 | 246 | 681 | 180 | 604 | 6.98e-73 | 252 |
| MS.gene02796.t1 | AT2G32250 | 34.234 | 444 | 265 | 9 | 246 | 681 | 180 | 604 | 6.98e-73 | 252 |
| MS.gene02796.t1 | AT2G32250 | 34.234 | 444 | 265 | 9 | 246 | 681 | 180 | 604 | 6.98e-73 | 252 |
| MS.gene02796.t1 | AT4G38170 | 31.920 | 448 | 291 | 7 | 239 | 684 | 21 | 456 | 8.46e-73 | 246 |
| MS.gene02796.t1 | AT1G10240 | 26.087 | 575 | 387 | 14 | 69 | 623 | 48 | 604 | 6.68e-52 | 191 |
| MS.gene02796.t1 | AT1G10240 | 26.087 | 575 | 387 | 14 | 69 | 623 | 48 | 604 | 6.68e-52 | 191 |
| MS.gene02796.t1 | AT5G28530 | 24.613 | 646 | 438 | 16 | 68 | 687 | 54 | 676 | 2.19e-39 | 155 |
| MS.gene02796.t1 | AT5G28530 | 24.730 | 647 | 432 | 17 | 68 | 687 | 54 | 672 | 4.31e-39 | 154 |
| MS.gene02796.t1 | AT5G28530 | 24.730 | 647 | 432 | 17 | 68 | 687 | 54 | 672 | 4.31e-39 | 154 |
| MS.gene02796.t1 | AT5G28530 | 23.465 | 635 | 396 | 18 | 68 | 687 | 54 | 613 | 6.82e-29 | 122 |
| MS.gene02796.t1 | AT5G28530 | 23.780 | 635 | 390 | 19 | 68 | 687 | 54 | 609 | 9.64e-29 | 122 |
| MS.gene02796.t1 | AT3G59470 | 36.607 | 112 | 66 | 2 | 58 | 166 | 61 | 170 | 5.31e-14 | 72.8 |
| MS.gene02796.t1 | AT3G59470 | 36.607 | 112 | 66 | 2 | 58 | 166 | 61 | 170 | 5.31e-14 | 72.8 |
| MS.gene02796.t1 | AT3G59470 | 36.607 | 112 | 66 | 2 | 58 | 166 | 73 | 182 | 5.80e-14 | 73.2 |
Find 0 sgRNAs with CRISPR-Local
Find 221 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAATAGAATCATATAAA+TGG | - | 15007:20100-20119 | MS.gene02796:intron | 10.0% |
| !! | AGTAATATAAAATTTCAAAT+TGG | - | 15007:18936-18955 | MS.gene02796:CDS | 10.0% |
| !!! | AAAAAGTATTTTTATACATA+TGG | + | 15007:19066-19085 | None:intergenic | 10.0% |
| !! | AAAATACAATATTCAAAACT+TGG | + | 15007:18286-18305 | None:intergenic | 15.0% |
| !!! | ACTTTTTTTTTTTTGAAGAA+TGG | - | 15007:18714-18733 | MS.gene02796:CDS | 15.0% |
| !!! | ATTGTTTTATTAGTTTCTAT+TGG | - | 15007:19034-19053 | MS.gene02796:CDS | 15.0% |
| !!! | TGAAATTTTATATTACTGAT+TGG | + | 15007:18933-18952 | None:intergenic | 15.0% |
| !! | AATGTTAAAAATAAAAGGGA+AGG | - | 15007:18572-18591 | MS.gene02796:CDS | 20.0% |
| !! | ACATAAATCCATTAAAAAGA+TGG | - | 15007:19639-19658 | MS.gene02796:CDS | 20.0% |
| !! | CATAAATCCATTAAAAAGAT+GGG | - | 15007:19640-19659 | MS.gene02796:CDS | 20.0% |
| !! | GGTCAATGTTAAAAATAAAA+GGG | - | 15007:18568-18587 | MS.gene02796:CDS | 20.0% |
| !! | TGGTCAATGTTAAAAATAAA+AGG | - | 15007:18567-18586 | MS.gene02796:CDS | 20.0% |
| !!! | ATTTTTATGGATATCTTTGT+CGG | - | 15007:20901-20920 | MS.gene02796:intron | 20.0% |
| !!! | GTTCAATATTGTTTTATTAG+AGG | - | 15007:19144-19163 | MS.gene02796:CDS | 20.0% |
| !!! | TGTTGTTGCTTTAATTTTTA+TGG | - | 15007:20888-20907 | MS.gene02796:intron | 20.0% |
| !!! | TTGAGACTATTTTGTATTTT+CGG | - | 15007:18415-18434 | MS.gene02796:CDS | 20.0% |
| !!! | TTTTTGAAGAATGGTTATTT+TGG | - | 15007:18723-18742 | MS.gene02796:CDS | 20.0% |
| ! | AAAAACTATGTTGTTAATCG+TGG | + | 15007:18133-18152 | None:intergenic | 25.0% |
| ! | AGTGACAAGTCTTTATAATT+TGG | + | 15007:17966-17985 | None:intergenic | 25.0% |
| ! | CGAAATAGCAAAGAAAAATA+CGG | - | 15007:19442-19461 | MS.gene02796:CDS | 25.0% |
| ! | CTATCTGTAATAATAGTTTG+AGG | + | 15007:20165-20184 | None:intergenic | 25.0% |
| ! | GTGCAACTTATTAGAATATT+TGG | + | 15007:19800-19819 | None:intergenic | 25.0% |
| ! | TAGAGGAATAAGTTATAACA+TGG | - | 15007:18257-18276 | MS.gene02796:CDS | 25.0% |
| ! | TCCATCAAATAAAAGAAGTT+TGG | + | 15007:19883-19902 | None:intergenic | 25.0% |
| ! | TGGACATATTTATCGAAAAA+AGG | + | 15007:20519-20538 | None:intergenic | 25.0% |
| ! | TTATCTTGACAACACTTATT+TGG | - | 15007:19987-20006 | MS.gene02796:intron | 25.0% |
| ! | TTGGATATTCATCATGATTT+GGG | - | 15007:18809-18828 | MS.gene02796:CDS | 25.0% |
| ! | TTTGGATATTCATCATGATT+TGG | - | 15007:18808-18827 | MS.gene02796:CDS | 25.0% |
| !! | AAGTCATTATTGAACTGTTT+TGG | - | 15007:18790-18809 | MS.gene02796:CDS | 25.0% |
| !! | ACTAATTCACATGGTTATTT+TGG | - | 15007:18691-18710 | MS.gene02796:CDS | 25.0% |
| !! | ATAAATGGTTGTTTAGAACA+TGG | - | 15007:20115-20134 | MS.gene02796:intron | 25.0% |
| !! | TGTGTGTACTCAATTTTATT+GGG | - | 15007:20931-20950 | MS.gene02796:intron | 25.0% |
| !! | TTGTGTGTACTCAATTTTAT+TGG | - | 15007:20930-20949 | MS.gene02796:intron | 25.0% |
| !!! | AAAAAAGTACCAGAAAAACT+GGG | - | 15007:20261-20280 | MS.gene02796:intron | 25.0% |
| !!! | AAGAAATGTTCTCTTGTTTT+GGG | - | 15007:20730-20749 | MS.gene02796:intron | 25.0% |
| !!! | AATTTCTGTCACTTTTACTA+AGG | - | 15007:18636-18655 | MS.gene02796:CDS | 25.0% |
| !!! | GTTGTTTTAATGTGTGTTAA+TGG | - | 15007:18052-18071 | MS.gene02796:CDS | 25.0% |
| !!! | TCCAAACTTCTTTTATTTGA+TGG | - | 15007:19879-19898 | MS.gene02796:CDS | 25.0% |
| AATAAGTTGCACCTAAGAAA+AGG | - | 15007:19808-19827 | MS.gene02796:CDS | 30.0% | |
| AATTTCTCTGGATCATTACA+AGG | - | 15007:21121-21140 | MS.gene02796:intron | 30.0% | |
| ACTTGTGTGAAAGATATAGT+TGG | - | 15007:18838-18857 | MS.gene02796:CDS | 30.0% | |
| ATAGTCATAACGAAAGAATC+TGG | + | 15007:18209-18228 | None:intergenic | 30.0% | |
| ATGACAATGACTAATTCACA+TGG | - | 15007:18682-18701 | MS.gene02796:CDS | 30.0% | |
| CACTAACTTAATCCTTATCA+TGG | + | 15007:19554-19573 | None:intergenic | 30.0% | |
| CATGATAAGGATTAAGTTAG+TGG | - | 15007:19552-19571 | MS.gene02796:CDS | 30.0% | |
| GCATTTAAGGAATGCATTAT+GGG | - | 15007:19918-19937 | MS.gene02796:CDS | 30.0% | |
| TAGTCATAACGAAAGAATCT+GGG | + | 15007:18208-18227 | None:intergenic | 30.0% | |
| TGCTGCGAATAATTAATACA+TGG | - | 15007:19004-19023 | MS.gene02796:CDS | 30.0% | |
| TGGATATTCATCATGATTTG+GGG | - | 15007:18810-18829 | MS.gene02796:CDS | 30.0% | |
| TTAGTTGGAATAAATCACCA+TGG | - | 15007:20039-20058 | MS.gene02796:intron | 30.0% | |
| TTGTTTGACAATATGCTAGA+TGG | - | 15007:19180-19199 | MS.gene02796:CDS | 30.0% | |
| ! | GACTTTGTTTATTGAGCATT+CGG | - | 15007:18745-18764 | MS.gene02796:CDS | 30.0% |
| ! | GGATTCATGATTCAATGTTT+TGG | - | 15007:20372-20391 | MS.gene02796:intron | 30.0% |
| ! | GTGTGTACTCAATTTTATTG+GGG | - | 15007:20932-20951 | MS.gene02796:intron | 30.0% |
| ! | TTGGAGTTAATGATAATGAG+TGG | - | 15007:20391-20410 | MS.gene02796:intron | 30.0% |
| !! | AGAAATTAGAAGTGTTAGTC+AGG | + | 15007:18623-18642 | None:intergenic | 30.0% |
| !! | CCATTGTTTTTCTCAAAACA+TGG | + | 15007:18464-18483 | None:intergenic | 30.0% |
| !! | GAAAAAAGTACCAGAAAAAC+TGG | - | 15007:20260-20279 | MS.gene02796:intron | 30.0% |
| !! | GAAGAAATGTTCTCTTGTTT+TGG | - | 15007:20729-20748 | MS.gene02796:intron | 30.0% |
| !! | TGATGGATTTCAATGATGAA+GGG | - | 15007:19896-19915 | MS.gene02796:CDS | 30.0% |
| !! | TTATATTTGCTATGCCAAAG+AGG | - | 15007:19381-19400 | MS.gene02796:CDS | 30.0% |
| !! | TTGATGGATTTCAATGATGA+AGG | - | 15007:19895-19914 | MS.gene02796:CDS | 30.0% |
| !! | TTGGATTAGTCAATTGCATA+CGG | + | 15007:19864-19883 | None:intergenic | 30.0% |
| !! | TTTTGAAGAATCACTTCATC+AGG | - | 15007:21157-21176 | MS.gene02796:CDS | 30.0% |
| !!! | AGCATTTGGTTTTTAGCAAA+GGG | + | 15007:20644-20663 | None:intergenic | 30.0% |
| !!! | CCATGTTTTGAGAAAAACAA+TGG | - | 15007:18461-18480 | MS.gene02796:CDS | 30.0% |
| AAACAATGGTGCAATGTCAT+TGG | - | 15007:18475-18494 | MS.gene02796:CDS | 35.0% | |
| AAATAAAAGGGAAGGATGCA+TGG | - | 15007:18580-18599 | MS.gene02796:CDS | 35.0% | |
| AACATTGACCACAAGACAAT+CGG | + | 15007:18558-18577 | None:intergenic | 35.0% | |
| AACCGATTAGACCATTGAAT+AGG | + | 15007:21065-21084 | None:intergenic | 35.0% | |
| AACTTAATCCTTATCATGGC+AGG | + | 15007:19550-19569 | None:intergenic | 35.0% | |
| AACTTGTCCTTCAGATATAC+CGG | + | 15007:20453-20472 | None:intergenic | 35.0% | |
| ACACATACGCAATGATTGTT+AGG | + | 15007:18032-18051 | None:intergenic | 35.0% | |
| ACATGGAACACATGTATATC+AGG | - | 15007:20132-20151 | MS.gene02796:intron | 35.0% | |
| ACATTTCTTCCACTTCAAGT+TGG | + | 15007:20719-20738 | None:intergenic | 35.0% | |
| ACCCTATTCAATGGTCTAAT+CGG | - | 15007:21060-21079 | MS.gene02796:intron | 35.0% | |
| ACCGATTAGACCATTGAATA+GGG | + | 15007:21064-21083 | None:intergenic | 35.0% | |
| ACGCAAATCATCACCAATTT+AGG | + | 15007:18338-18357 | None:intergenic | 35.0% | |
| ACGGCAGAGGAAATTATAAA+TGG | + | 15007:19845-19864 | None:intergenic | 35.0% | |
| AGTCATAACGAAAGAATCTG+GGG | + | 15007:18207-18226 | None:intergenic | 35.0% | |
| ATATTGTGAGAGAGAGGAAA+AGG | - | 15007:18889-18908 | MS.gene02796:CDS | 35.0% | |
| ATGTGTGTTAATGGCTATAG+CGG | - | 15007:18061-18080 | MS.gene02796:CDS | 35.0% | |
| ATTTCAATGCATTCTCCATC+CGG | + | 15007:19235-19254 | None:intergenic | 35.0% | |
| CAAATATGAAATCCCTCTTG+TGG | - | 15007:20014-20033 | MS.gene02796:intron | 35.0% | |
| CAGTATCATCAGGACTAAAA+CGG | + | 15007:21034-21053 | None:intergenic | 35.0% | |
| CGTTTCAAACTATTATGTCG+TGG | - | 15007:18355-18374 | MS.gene02796:CDS | 35.0% | |
| CTAAAGCAATGATGAGATCT+GGG | + | 15007:20225-20244 | None:intergenic | 35.0% | |
| GAAATTCCAAGAGATGAAGA+TGG | - | 15007:19250-19269 | MS.gene02796:CDS | 35.0% | |
| GATAGTATATTGTGAGAGAG+AGG | - | 15007:18883-18902 | MS.gene02796:CDS | 35.0% | |
| GGCATTTAAGGAATGCATTA+TGG | - | 15007:19917-19936 | MS.gene02796:CDS | 35.0% | |
| GTGTGAGGATTAAGAATTCA+TGG | - | 15007:19413-19432 | MS.gene02796:CDS | 35.0% | |
| GTTATGACTATCTGACTCTT+TGG | - | 15007:18218-18237 | MS.gene02796:CDS | 35.0% | |
| TACAAGTAGAATCAAGCATC+AGG | + | 15007:18395-18414 | None:intergenic | 35.0% | |
| TCCATTAAAAAGATGGGAAG+TGG | - | 15007:19646-19665 | MS.gene02796:CDS | 35.0% | |
| TCGGTTATCTATGTCCAAAA+GGG | - | 15007:18434-18453 | MS.gene02796:CDS | 35.0% | |
| TTCGGTTATCTATGTCCAAA+AGG | - | 15007:18433-18452 | MS.gene02796:CDS | 35.0% | |
| TTGAGAAAAGAAACCAGAAC+TGG | - | 15007:19520-19539 | MS.gene02796:CDS | 35.0% | |
| TTGTGCTGCAAATTTCAATG+AGG | - | 15007:18515-18534 | MS.gene02796:CDS | 35.0% | |
| ! | AGCTCTTTACAAGAAGTACA+AGG | - | 15007:20581-20600 | MS.gene02796:intron | 35.0% |
| ! | CAATCAGTGTTATTAGGTTG+TGG | - | 15007:20063-20082 | MS.gene02796:intron | 35.0% |
| ! | CATGGTCAATCAGTGTTATT+AGG | - | 15007:20057-20076 | MS.gene02796:intron | 35.0% |
| ! | CGATATTTCTGAGGGTAAAA+AGG | - | 15007:19300-19319 | MS.gene02796:CDS | 35.0% |
| ! | CTAATAACACTGATTGACCA+TGG | + | 15007:20059-20078 | None:intergenic | 35.0% |
| ! | TCCACTTCCCATCTTTTTAA+TGG | + | 15007:19650-19669 | None:intergenic | 35.0% |
| ! | TGTACTCAATTTTATTGGGG+TGG | - | 15007:20935-20954 | MS.gene02796:intron | 35.0% |
| ! | TGTCAAGACGATATTTCTGA+GGG | - | 15007:19292-19311 | MS.gene02796:CDS | 35.0% |
| ! | TTGTCAAGACGATATTTCTG+AGG | - | 15007:19291-19310 | MS.gene02796:CDS | 35.0% |
| ! | TTTTGATCGAGGGAAACAAA+CGG | - | 15007:20808-20827 | MS.gene02796:intron | 35.0% |
| !! | ATGGGTTGATGCTAAATCTA+GGG | - | 15007:19936-19955 | MS.gene02796:intron | 35.0% |
| !! | GCAGTTTAGTTTGCCTAAAT+TGG | - | 15007:18322-18341 | MS.gene02796:CDS | 35.0% |
| !! | TATGGGTTGATGCTAAATCT+AGG | - | 15007:19935-19954 | MS.gene02796:intron | 35.0% |
| !! | TCAATGATGAAGGGCATTTA+AGG | - | 15007:19905-19924 | MS.gene02796:CDS | 35.0% |
| !!! | GAGCATTTGGTTTTTAGCAA+AGG | + | 15007:20645-20664 | None:intergenic | 35.0% |
| !!! | GTCACTTTTACTAAGGTGTT+AGG | - | 15007:18643-18662 | MS.gene02796:CDS | 35.0% |
| AAGTACCAGAAAAACTGGGA+GGG | - | 15007:20265-20284 | MS.gene02796:intron | 40.0% | |
| ACAATGCAATTACACGTGGA+TGG | - | 15007:20753-20772 | MS.gene02796:intron | 40.0% | |
| ATTCCAACTAAAGCCACAAG+AGG | + | 15007:20030-20049 | None:intergenic | 40.0% | |
| ATTGAATTCGATGCAGCATG+GGG | - | 15007:20351-20370 | MS.gene02796:intron | 40.0% | |
| CACACAAAATCCAACCTCTT+TGG | + | 15007:19398-19417 | None:intergenic | 40.0% | |
| CACCTCGAAAGAATGTACTT+AGG | + | 15007:20972-20991 | None:intergenic | 40.0% | |
| CATACGCAATGATTGTTAGG+TGG | + | 15007:18029-18048 | None:intergenic | 40.0% | |
| CCACAAACAGACTTCTTTGA+AGG | - | 15007:20536-20555 | MS.gene02796:intron | 40.0% | |
| CCTTCAAAGAAGTCTGTTTG+TGG | + | 15007:20539-20558 | None:intergenic | 40.0% | |
| CGGTTATCTATGTCCAAAAG+GGG | - | 15007:18435-18454 | MS.gene02796:CDS | 40.0% | |
| CTAAGTACATTCTTTCGAGG+TGG | - | 15007:20970-20989 | MS.gene02796:intron | 40.0% | |
| CTATTATTTCACCTGCAAGC+AGG | + | 15007:20089-20108 | None:intergenic | 40.0% | |
| CTCCTAAGTACATTCTTTCG+AGG | - | 15007:20967-20986 | MS.gene02796:intron | 40.0% | |
| CTCGAAAGAATGTACTTAGG+AGG | + | 15007:20969-20988 | None:intergenic | 40.0% | |
| CTCGAACATAACCACATCTT+AGG | - | 15007:19607-19626 | MS.gene02796:CDS | 40.0% | |
| CTGATACTGACCCTATTCAA+TGG | - | 15007:21051-21070 | MS.gene02796:intron | 40.0% | |
| GACTATCTGACTCTTTGGTT+GGG | - | 15007:18223-18242 | MS.gene02796:CDS | 40.0% | |
| GATTGAATTCGATGCAGCAT+GGG | - | 15007:20350-20369 | MS.gene02796:intron | 40.0% | |
| GCACTTGTGATAGATACAGA+AGG | - | 15007:19730-19749 | MS.gene02796:CDS | 40.0% | |
| GCTAAAGCAATGATGAGATC+TGG | + | 15007:20226-20245 | None:intergenic | 40.0% | |
| GGGAAACAAACGGGAAATTA+AGG | - | 15007:20818-20837 | MS.gene02796:intron | 40.0% | |
| GTATCTTAGCACCTAAGATG+TGG | + | 15007:19621-19640 | None:intergenic | 40.0% | |
| GTCATAACGAAAGAATCTGG+GGG | + | 15007:18206-18225 | None:intergenic | 40.0% | |
| TCGTGATGTAGAACACAAAC+AGG | - | 15007:21181-21200 | MS.gene02796:CDS | 40.0% | |
| TGACTATCTGACTCTTTGGT+TGG | - | 15007:18222-18241 | MS.gene02796:CDS | 40.0% | |
| TGATTCAAACTCCATTCCGA+CGG | + | 15007:19341-19360 | None:intergenic | 40.0% | |
| TGATTGAATTCGATGCAGCA+TGG | - | 15007:20349-20368 | MS.gene02796:intron | 40.0% | |
| TGCAGAGGGGAAAACAATTA+AGG | - | 15007:19699-19718 | MS.gene02796:CDS | 40.0% | |
| TGTGTGTTAATGGCTATAGC+GGG | - | 15007:18062-18081 | MS.gene02796:CDS | 40.0% | |
| TTACGAAGACCGAGTTCATT+GGG | - | 15007:20425-20444 | MS.gene02796:intron | 40.0% | |
| TTCCAACTAAAGCCACAAGA+GGG | + | 15007:20029-20048 | None:intergenic | 40.0% | |
| TTGACAACCTAGCTCAAAGA+TGG | + | 15007:18973-18992 | None:intergenic | 40.0% | |
| TTGTAGACCATCTTTGAGCT+AGG | - | 15007:18963-18982 | MS.gene02796:CDS | 40.0% | |
| TTTACGAAGACCGAGTTCAT+TGG | - | 15007:20424-20443 | MS.gene02796:intron | 40.0% | |
| TTTGATCGAGGGAAACAAAC+GGG | - | 15007:20809-20828 | MS.gene02796:intron | 40.0% | |
| TTTGCAGTTTGATGTCGCAT+TGG | - | 15007:18150-18169 | MS.gene02796:CDS | 40.0% | |
| ! | AAAGTACCAGAAAAACTGGG+AGG | - | 15007:20264-20283 | MS.gene02796:intron | 40.0% |
| ! | AAGAGGTTGGATTTTGTGTG+AGG | - | 15007:19398-19417 | MS.gene02796:CDS | 40.0% |
| ! | AAGCTCTAATCTCGATGTCA+CGG | - | 15007:17986-18005 | MS.gene02796:CDS | 40.0% |
| ! | ACTCAATTTTATTGGGGTGG+AGG | - | 15007:20938-20957 | MS.gene02796:intron | 40.0% |
| ! | CTAAGGTGTTAGGATGTCAT+AGG | - | 15007:18653-18672 | MS.gene02796:CDS | 40.0% |
| ! | CTTGTGTGTCACCTTTTCTT+AGG | + | 15007:19822-19841 | None:intergenic | 40.0% |
| ! | TACAAGCGCTTTTGTATTCC+CGG | - | 15007:21002-21021 | MS.gene02796:intron | 40.0% |
| !! | ATTTGCTATGCCAAAGAGGT+TGG | - | 15007:19385-19404 | MS.gene02796:CDS | 40.0% |
| !! | CTGCAGTTCAAAAGAGCATT+TGG | + | 15007:20658-20677 | None:intergenic | 40.0% |
| !! | TAGAAGTGCCTTACAAGTTG+TGG | - | 15007:21088-21107 | MS.gene02796:intron | 40.0% |
| !! | TTCCACTTCAAGTTGGAACT+TGG | + | 15007:20712-20731 | None:intergenic | 40.0% |
| !!! | CTGAAGGACAAGTTTTTTGC+TGG | - | 15007:20459-20478 | MS.gene02796:intron | 40.0% |
| AAGTGCCTTACAAGTTGTGG+AGG | - | 15007:21091-21110 | MS.gene02796:intron | 45.0% | |
| AGCTCTGTCATCTCTTGCAT+TGG | + | 15007:19773-19792 | None:intergenic | 45.0% | |
| AGGACTAAAACGGTTGTGAC+CGG | + | 15007:21024-21043 | None:intergenic | 45.0% | |
| AGTTAGTGGAGTCTCAGAGA+TGG | - | 15007:19566-19585 | MS.gene02796:CDS | 45.0% | |
| AGTTTGATGTCGCATTGGAC+TGG | - | 15007:18155-18174 | MS.gene02796:CDS | 45.0% | |
| ATCTGACTCTTTGGTTGGGA+GGG | - | 15007:18227-18246 | MS.gene02796:CDS | 45.0% | |
| CACCAAGTTCCAACTTGAAG+TGG | - | 15007:20707-20726 | MS.gene02796:intron | 45.0% | |
| GAGGAAAAGGTTGCAGGAAA+AGG | - | 15007:18902-18921 | MS.gene02796:CDS | 45.0% | |
| GGGTCAGTATCAGTATCATC+AGG | + | 15007:21044-21063 | None:intergenic | 45.0% | |
| GTGTGTTAATGGCTATAGCG+GGG | - | 15007:18063-18082 | MS.gene02796:CDS | 45.0% | |
| TAGTCAATTGCATACGGCAG+AGG | + | 15007:19858-19877 | None:intergenic | 45.0% | |
| TATCACCGTCTTCTTGGTCA+AGG | - | 15007:20779-20798 | MS.gene02796:intron | 45.0% | |
| TATCTGACTCTTTGGTTGGG+AGG | - | 15007:18226-18245 | MS.gene02796:CDS | 45.0% | |
| TCATTACAAGGTAGCGTTGC+AGG | - | 15007:21133-21152 | MS.gene02796:intron | 45.0% | |
| TGACCAAGAAGACGGTGATA+GGG | + | 15007:20779-20798 | None:intergenic | 45.0% | |
| TGGGACAATGCAATTACACG+TGG | - | 15007:20749-20768 | MS.gene02796:intron | 45.0% | |
| TTGACCAAGAAGACGGTGAT+AGG | + | 15007:20780-20799 | None:intergenic | 45.0% | |
| TTGCTGGTATGTCTGCAACA+CGG | - | 15007:20475-20494 | MS.gene02796:intron | 45.0% | |
| ! | AGAGCACCATCTTCATCTCT+TGG | + | 15007:19259-19278 | None:intergenic | 45.0% |
| ! | CAAAACATGGAGACCCCTTT+TGG | + | 15007:18451-18470 | None:intergenic | 45.0% |
| ! | GTGCTTTGTTGTAGCAGTCA+AGG | - | 15007:19469-19488 | MS.gene02796:CDS | 45.0% |
| !! | ATCCCTCTTGTGGCTTTAGT+TGG | - | 15007:20024-20043 | MS.gene02796:intron | 45.0% |
| !! | TTGCCTAGTTCTGATGCAGA+GGG | - | 15007:19685-19704 | MS.gene02796:CDS | 45.0% |
| ATACCGGTGCCCAATGAACT+CGG | + | 15007:20437-20456 | None:intergenic | 50.0% | |
| ATCTGGGGGCAAAAGGCAAA+AGG | + | 15007:18192-18211 | None:intergenic | 50.0% | |
| CGAAAGAATCTGGGGGCAAA+AGG | + | 15007:18199-18218 | None:intergenic | 50.0% | |
| CTGGTTGTCCTGCCATGATA+AGG | - | 15007:19539-19558 | MS.gene02796:CDS | 50.0% | |
| GAGAGAGAGGAAAAGGTTGC+AGG | - | 15007:18896-18915 | MS.gene02796:CDS | 50.0% | |
| GCCTTACAAGTTGTGGAGGA+GGG | - | 15007:21095-21114 | MS.gene02796:intron | 50.0% | |
| GGACTAAAACGGTTGTGACC+GGG | + | 15007:21023-21042 | None:intergenic | 50.0% | |
| GGAGGAGGGAGTAATTTCTC+TGG | - | 15007:21109-21128 | MS.gene02796:intron | 50.0% | |
| GTATGTCTGCAACACGGTCT+GGG | - | 15007:20481-20500 | MS.gene02796:intron | 50.0% | |
| GTTGGGAGGGAAGAGAATAG+AGG | - | 15007:18240-18259 | MS.gene02796:CDS | 50.0% | |
| TAGTGGAGTCTCAGAGATGG+AGG | - | 15007:19569-19588 | MS.gene02796:CDS | 50.0% | |
| TATGTCTGCAACACGGTCTG+GGG | - | 15007:20482-20501 | MS.gene02796:intron | 50.0% | |
| TCAGAGATGGAGGATATGCG+AGG | - | 15007:19579-19598 | MS.gene02796:CDS | 50.0% | |
| TCCCTCCTCCACAACTTGTA+AGG | + | 15007:21099-21118 | None:intergenic | 50.0% | |
| TGCCTTACAAGTTGTGGAGG+AGG | - | 15007:21094-21113 | MS.gene02796:intron | 50.0% | |
| TTCCCCTCTGCATCAGAACT+AGG | + | 15007:19691-19710 | None:intergenic | 50.0% | |
| ! | GCTAAATCTAGGGCTGCATG+CGG | - | 15007:19946-19965 | MS.gene02796:intron | 50.0% |
| ! | TGCAACCCTCCCAGTTTTTC+TGG | + | 15007:20273-20292 | None:intergenic | 50.0% |
| !! | AAGGAGCGCGTTTTGATCGA+GGG | - | 15007:20798-20817 | MS.gene02796:intron | 50.0% |
| !! | GAAGTGCACCGATTGTCTTG+TGG | - | 15007:18547-18566 | MS.gene02796:CDS | 50.0% |
| !! | GAATTTGTTGCACCTGCCGT+CGG | - | 15007:19322-19341 | MS.gene02796:CDS | 50.0% |
| !! | GTTGCCTAGTTCTGATGCAG+AGG | - | 15007:19684-19703 | MS.gene02796:CDS | 50.0% |
| !! | TGCCTAGTTCTGATGCAGAG+GGG | - | 15007:19686-19705 | MS.gene02796:CDS | 50.0% |
| !! | TTGGGCACCGGTATATCTGA+AGG | - | 15007:20443-20462 | MS.gene02796:intron | 50.0% |
| ACCATGCAGCAAGCAATCGC+CGG | - | 15007:19213-19232 | MS.gene02796:CDS | 55.0% | |
| AGACCGAGTTCATTGGGCAC+CGG | - | 15007:20431-20450 | MS.gene02796:intron | 55.0% | |
| CATGGCAGGACAACCAGTTC+TGG | + | 15007:19536-19555 | None:intergenic | 55.0% | |
| GCGCTCCTTGACCAAGAAGA+CGG | + | 15007:20787-20806 | None:intergenic | 55.0% | |
| GGTATGTCTGCAACACGGTC+TGG | - | 15007:20480-20499 | MS.gene02796:intron | 55.0% | |
| TCAAACTCCATTCCGACGGC+AGG | + | 15007:19337-19356 | None:intergenic | 55.0% | |
| TGGCCCTATCACCGTCTTCT+TGG | - | 15007:20773-20792 | MS.gene02796:intron | 55.0% | |
| ! | TTAGGTTGTGGCCTGCTTGC+AGG | - | 15007:20075-20094 | MS.gene02796:intron | 55.0% |
| !! | CAAGGAGCGCGTTTTGATCG+AGG | - | 15007:20797-20816 | MS.gene02796:intron | 55.0% |
| TGCAGCAAGCAATCGCCGGA+TGG | - | 15007:19217-19236 | MS.gene02796:CDS | 60.0% | |
| TGTTGCACCTGCCGTCGGAA+TGG | - | 15007:19327-19346 | MS.gene02796:CDS | 60.0% | |
| ! | TCCGGCGATTGCTTGCTGCA+TGG | + | 15007:19217-19236 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 15007 | gene | 17939 | 21208 | 17939 | ID=MS.gene02796 |
| 15007 | mRNA | 17939 | 21208 | 17939 | ID=MS.gene02796.t1;Parent=MS.gene02796 |
| 15007 | exon | 21140 | 21208 | 21140 | ID=MS.gene02796.t1.exon1;Parent=MS.gene02796.t1 |
| 15007 | CDS | 21140 | 21208 | 21140 | ID=cds.MS.gene02796.t1;Parent=MS.gene02796.t1 |
| 15007 | exon | 17939 | 19948 | 17939 | ID=MS.gene02796.t1.exon2;Parent=MS.gene02796.t1 |
| 15007 | CDS | 17939 | 19948 | 17939 | ID=cds.MS.gene02796.t1;Parent=MS.gene02796.t1 |
| Gene Sequence |
| Protein sequence |
