Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene028028.t1 | XP_003612667.1 | 90.6 | 235 | 19 | 2 | 3 | 237 | 2 | 233 | 2.10E-90 | 342 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene028028.t1 | Q8S9H7 | 49.5 | 107 | 45 | 3 | 98 | 204 | 135 | 232 | 7.9e-17 | 89.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene028028.t1 | G7K885 | 90.6 | 235 | 19 | 2 | 3 | 237 | 2 | 233 | 1.5e-90 | 342.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene028028.t1 | TF | MYB-related |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene028028.t1 | MTR_5g027570 | 91.489 | 235 | 17 | 3 | 3 | 237 | 2 | 233 | 8.02e-149 | 414 |
MS.gene028028.t1 | MTR_5g088060 | 58.304 | 283 | 57 | 7 | 3 | 235 | 190 | 461 | 7.04e-89 | 270 |
MS.gene028028.t1 | MTR_5g488160 | 58.304 | 283 | 57 | 7 | 3 | 235 | 190 | 461 | 7.04e-89 | 270 |
MS.gene028028.t1 | MTR_5g027550 | 59.592 | 245 | 70 | 5 | 3 | 235 | 2 | 229 | 6.16e-86 | 254 |
MS.gene028028.t1 | MTR_5g088010 | 58.039 | 255 | 52 | 4 | 30 | 235 | 1 | 249 | 1.83e-84 | 251 |
MS.gene028028.t1 | MTR_1g111830 | 42.000 | 150 | 69 | 4 | 59 | 204 | 85 | 220 | 5.32e-26 | 101 |
MS.gene028028.t1 | MTR_5g081860 | 38.286 | 175 | 90 | 4 | 30 | 193 | 66 | 233 | 6.71e-25 | 99.4 |
MS.gene028028.t1 | MTR_7g067080 | 44.882 | 127 | 57 | 4 | 84 | 208 | 129 | 244 | 5.18e-24 | 97.8 |
MS.gene028028.t1 | MTR_4g111975 | 33.495 | 206 | 102 | 7 | 29 | 206 | 45 | 243 | 5.51e-24 | 97.8 |
MS.gene028028.t1 | MTR_3g462790 | 44.715 | 123 | 60 | 2 | 85 | 207 | 137 | 251 | 1.72e-23 | 96.7 |
MS.gene028028.t1 | MTR_8g063600 | 40.800 | 125 | 65 | 2 | 51 | 166 | 53 | 177 | 6.80e-23 | 94.7 |
MS.gene028028.t1 | MTR_5g069710 | 58.025 | 81 | 31 | 2 | 85 | 164 | 122 | 200 | 1.41e-22 | 94.0 |
MS.gene028028.t1 | MTR_4g100630 | 39.655 | 116 | 66 | 2 | 45 | 160 | 47 | 158 | 2.33e-22 | 93.6 |
MS.gene028028.t1 | MTR_8g063870 | 35.220 | 159 | 93 | 3 | 65 | 218 | 67 | 220 | 1.24e-21 | 90.9 |
MS.gene028028.t1 | MTR_2g100930 | 54.167 | 72 | 31 | 1 | 91 | 162 | 105 | 174 | 3.61e-21 | 90.9 |
MS.gene028028.t1 | MTR_3g104370 | 43.925 | 107 | 54 | 3 | 62 | 165 | 59 | 162 | 6.58e-20 | 85.5 |
MS.gene028028.t1 | MTR_1g048660 | 54.286 | 70 | 30 | 1 | 97 | 166 | 14 | 81 | 2.65e-19 | 80.1 |
MS.gene028028.t1 | MTR_6g092540 | 54.286 | 70 | 30 | 1 | 91 | 160 | 93 | 160 | 2.71e-19 | 84.7 |
MS.gene028028.t1 | MTR_5g037080 | 53.086 | 81 | 30 | 2 | 66 | 142 | 73 | 149 | 1.75e-18 | 82.8 |
MS.gene028028.t1 | MTR_8g101650 | 52.857 | 70 | 30 | 1 | 91 | 160 | 101 | 167 | 1.88e-18 | 82.4 |
MS.gene028028.t1 | MTR_4g107230 | 57.377 | 61 | 26 | 0 | 81 | 141 | 70 | 130 | 3.05e-18 | 82.0 |
MS.gene028028.t1 | MTR_4g015130 | 55.932 | 59 | 24 | 1 | 105 | 163 | 3 | 59 | 2.08e-16 | 72.0 |
MS.gene028028.t1 | MTR_5g075760 | 50.000 | 88 | 38 | 3 | 96 | 182 | 106 | 188 | 4.20e-16 | 74.7 |
MS.gene028028.t1 | MTR_0036s0260 | 40.506 | 79 | 45 | 1 | 95 | 173 | 28 | 104 | 7.75e-16 | 73.9 |
MS.gene028028.t1 | MTR_1g083180 | 41.228 | 114 | 47 | 3 | 54 | 166 | 38 | 132 | 2.20e-15 | 72.0 |
MS.gene028028.t1 | MTR_1g033620 | 60.714 | 56 | 19 | 2 | 110 | 164 | 20 | 73 | 4.77e-15 | 72.4 |
MS.gene028028.t1 | MTR_5g075790 | 48.864 | 88 | 39 | 3 | 96 | 182 | 114 | 196 | 1.54e-14 | 70.5 |
MS.gene028028.t1 | MTR_2g090305 | 41.772 | 79 | 44 | 1 | 95 | 173 | 28 | 104 | 1.84e-14 | 69.7 |
MS.gene028028.t1 | MTR_8g072990 | 46.269 | 67 | 36 | 0 | 90 | 156 | 95 | 161 | 3.19e-14 | 70.1 |
MS.gene028028.t1 | MTR_6g043490 | 42.857 | 77 | 41 | 1 | 92 | 165 | 104 | 180 | 3.03e-13 | 67.0 |
MS.gene028028.t1 | MTR_3g070110 | 49.315 | 73 | 30 | 2 | 96 | 162 | 96 | 167 | 3.83e-13 | 66.6 |
MS.gene028028.t1 | MTR_8g073050 | 39.726 | 73 | 44 | 0 | 90 | 162 | 98 | 170 | 1.06e-12 | 65.5 |
MS.gene028028.t1 | MTR_6g043480 | 44.118 | 68 | 35 | 1 | 90 | 154 | 102 | 169 | 1.06e-12 | 65.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene028028.t1 | AT5G08520 | 45.161 | 124 | 54 | 2 | 60 | 171 | 71 | 192 | 1.48e-26 | 104 |
MS.gene028028.t1 | AT3G10580 | 33.690 | 187 | 99 | 5 | 22 | 206 | 39 | 202 | 3.19e-25 | 100 |
MS.gene028028.t1 | AT3G10580 | 33.690 | 187 | 99 | 5 | 22 | 206 | 39 | 202 | 8.28e-25 | 99.8 |
MS.gene028028.t1 | AT5G04760 | 44.167 | 120 | 57 | 3 | 80 | 198 | 84 | 194 | 3.67e-24 | 96.3 |
MS.gene028028.t1 | AT5G23650 | 39.264 | 163 | 86 | 4 | 55 | 217 | 83 | 232 | 8.72e-24 | 97.8 |
MS.gene028028.t1 | AT5G58900 | 61.333 | 75 | 26 | 2 | 91 | 164 | 137 | 209 | 2.70e-23 | 95.5 |
MS.gene028028.t1 | AT1G49010 | 51.163 | 86 | 39 | 2 | 87 | 171 | 126 | 209 | 4.70e-23 | 95.5 |
MS.gene028028.t1 | AT2G38090 | 49.038 | 104 | 44 | 4 | 68 | 164 | 108 | 209 | 9.86e-22 | 91.7 |
MS.gene028028.t1 | AT3G11280 | 41.538 | 130 | 68 | 3 | 83 | 206 | 115 | 242 | 1.42e-21 | 90.5 |
MS.gene028028.t1 | AT3G11280 | 41.538 | 130 | 68 | 3 | 83 | 206 | 115 | 242 | 1.42e-21 | 90.5 |
MS.gene028028.t1 | AT5G61620 | 46.154 | 130 | 46 | 6 | 84 | 205 | 101 | 214 | 3.85e-21 | 90.5 |
MS.gene028028.t1 | AT5G01200 | 57.333 | 75 | 29 | 2 | 91 | 164 | 142 | 214 | 9.82e-21 | 88.2 |
MS.gene028028.t1 | AT5G47390 | 54.545 | 77 | 29 | 2 | 84 | 160 | 89 | 159 | 1.65e-20 | 89.4 |
MS.gene028028.t1 | AT5G05790 | 51.111 | 90 | 38 | 2 | 83 | 168 | 119 | 206 | 4.31e-20 | 86.7 |
MS.gene028028.t1 | AT5G05790 | 51.111 | 90 | 38 | 2 | 83 | 168 | 119 | 206 | 4.31e-20 | 86.7 |
MS.gene028028.t1 | AT5G56840 | 50.649 | 77 | 37 | 1 | 91 | 167 | 87 | 162 | 5.76e-19 | 82.8 |
MS.gene028028.t1 | AT3G16350 | 54.054 | 74 | 32 | 2 | 70 | 142 | 112 | 184 | 2.86e-18 | 83.2 |
MS.gene028028.t1 | AT1G19000 | 53.247 | 77 | 30 | 2 | 65 | 141 | 78 | 148 | 6.26e-18 | 80.9 |
MS.gene028028.t1 | AT1G19000 | 53.247 | 77 | 30 | 2 | 65 | 141 | 78 | 148 | 6.26e-18 | 80.9 |
MS.gene028028.t1 | AT1G70000 | 62.069 | 58 | 18 | 1 | 85 | 142 | 92 | 145 | 8.88e-18 | 80.1 |
MS.gene028028.t1 | AT1G70000 | 62.069 | 58 | 18 | 1 | 85 | 142 | 92 | 145 | 8.88e-18 | 80.1 |
MS.gene028028.t1 | AT1G74840 | 53.947 | 76 | 31 | 1 | 66 | 141 | 71 | 142 | 1.33e-17 | 79.3 |
MS.gene028028.t1 | AT1G74840 | 53.947 | 76 | 31 | 1 | 66 | 141 | 71 | 142 | 1.66e-17 | 79.7 |
MS.gene028028.t1 | AT4G09450 | 48.750 | 80 | 39 | 1 | 90 | 169 | 86 | 163 | 2.16e-17 | 77.8 |
MS.gene028028.t1 | AT3G10590 | 46.429 | 84 | 42 | 1 | 80 | 163 | 96 | 176 | 4.75e-15 | 71.6 |
Find 40 sgRNAs with CRISPR-Local
Find 77 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCTCTACATCTTTCACATTT+TGG | 0.117923 | 5.3:-17177749 | None:intergenic |
TGAGAAGATGCGCGACTTAT+TGG | 0.189075 | 5.3:+17177992 | MS.gene028028:CDS |
TGTGATGTATAGGTTGTTTC+TGG | 0.210646 | 5.3:+17177617 | MS.gene028028:intron |
TCCAATCGGTTCTACAATTC+CGG | 0.270420 | 5.3:+17177956 | MS.gene028028:CDS |
TTAGCTTCATTACTTCCTTC+AGG | 0.334459 | 5.3:-17176763 | None:intergenic |
TTCTCAAGTTTCTCTATATC+CGG | 0.389268 | 5.3:-17177975 | None:intergenic |
GCATGGCTAGCTATTTGAAT+TGG | 0.389834 | 5.3:-17177708 | None:intergenic |
TTGTGCTTGCTTTGTCCAAT+CGG | 0.442636 | 5.3:+17177942 | MS.gene028028:CDS |
AGATATTTCAAAAGAATTTG+TGG | 0.448838 | 5.3:+17177674 | MS.gene028028:CDS |
TGGAAGGAATCTCATCTTGT+TGG | 0.451198 | 5.3:-17177845 | None:intergenic |
CAAAGAGAGGGCGTAGGGAA+AGG | 0.497543 | 5.3:+17176827 | MS.gene028028:CDS |
AAAGAGAGGGCGTAGGGAAA+GGG | 0.499642 | 5.3:+17176828 | MS.gene028028:CDS |
TGTTATAGGAACATGGAAGA+AGG | 0.512958 | 5.3:+17176556 | None:intergenic |
GGAAGTAATGAAGCTAACTT+AGG | 0.518501 | 5.3:+17176769 | MS.gene028028:CDS |
ATGTGAAAGATGTAGAGAAG+AGG | 0.526828 | 5.3:+17177754 | MS.gene028028:CDS |
TGTTCCATGCTATTCTCAGA+GGG | 0.542367 | 5.3:-17176640 | None:intergenic |
ATGTATAGGTTGTTTCTGGA+GGG | 0.542704 | 5.3:+17177621 | MS.gene028028:intron |
GTCTGTTGCATTCCTTGAGG+AGG | 0.550846 | 5.3:-17177888 | None:intergenic |
TTGTTCCATGCTATTCTCAG+AGG | 0.560192 | 5.3:-17176641 | None:intergenic |
TAGGGAAAGGGTACATTGGA+CGG | 0.560493 | 5.3:+17176840 | MS.gene028028:CDS |
TCCGGAATTGTAGAACCGAT+TGG | 0.561152 | 5.3:-17177957 | None:intergenic |
TGTATAGGTTGTTTCTGGAG+GGG | 0.562950 | 5.3:+17177622 | MS.gene028028:intron |
GTGAAGCAAAGAGAGGGCGT+AGG | 0.568855 | 5.3:+17176821 | MS.gene028028:CDS |
GGCGTAGGGAAAGGGTACAT+TGG | 0.572735 | 5.3:+17176836 | MS.gene028028:CDS |
CAAAATGAAACTCCTCCTCA+AGG | 0.584892 | 5.3:+17177876 | MS.gene028028:CDS |
GGACAAAGCAAGCACAACAT+AGG | 0.584982 | 5.3:-17177936 | None:intergenic |
ATCATTAGAGTTTAGAACTG+CGG | 0.588029 | 5.3:-17176713 | None:intergenic |
GAAAGGGTACATTGGACGGA+AGG | 0.588233 | 5.3:+17176844 | MS.gene028028:CDS |
TGAAGCAAAGAGAGGGCGTA+GGG | 0.595570 | 5.3:+17176822 | MS.gene028028:CDS |
CAAGCTGAGTCAGTACAAGA+AGG | 0.604309 | 5.3:+17176793 | MS.gene028028:CDS |
GATGTATAGGTTGTTTCTGG+AGG | 0.607647 | 5.3:+17177620 | MS.gene028028:intron |
CAAGCTGAGTCAGTACCTGA+AGG | 0.616539 | 5.3:+17176748 | MS.gene028028:CDS |
CGACACTGATGTCATTGAGT+CGG | 0.619037 | 5.3:+17176681 | MS.gene028028:CDS |
AGATCCCTCTGAGAATAGCA+TGG | 0.623635 | 5.3:+17176636 | MS.gene028028:CDS |
ATCATATCGATTTAAATGAG+CGG | 0.624082 | 5.3:+17176602 | MS.gene028028:CDS |
TCATTTAAATCGATATGATG+AGG | 0.628741 | 5.3:-17176598 | None:intergenic |
GGAAGTCGTGAAGCAAAGAG+AGG | 0.632062 | 5.3:+17176814 | MS.gene028028:CDS |
ATTAGAGTTTAGAACTGCGG+CGG | 0.640700 | 5.3:-17176710 | None:intergenic |
GAAGTCGTGAAGCAAAGAGA+GGG | 0.647998 | 5.3:+17176815 | MS.gene028028:CDS |
TGTGTCTGTTGCATTCCTTG+AGG | 0.673315 | 5.3:-17177891 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AGAATTGAAAAAAAAAAATA+TGG | - | chr5.3:17177094-17177113 | None:intergenic | 10.0% |
!!! | TACAAATATAAATTTTGTTT+TGG | + | chr5.3:17176960-17176979 | MS.gene028028:intron | 10.0% |
!!! | TTTTTTCAATTCTATATTTT+AGG | + | chr5.3:17177101-17177120 | MS.gene028028:intron | 10.0% |
!! | AAAAAATATATATAACTTCC+AGG | - | chr5.3:17176897-17176916 | None:intergenic | 15.0% |
!! | AAAAATATATATAACTTCCA+GGG | - | chr5.3:17176896-17176915 | None:intergenic | 15.0% |
!!! | TGGAAGTTATATATATTTTT+TGG | + | chr5.3:17176896-17176915 | MS.gene028028:intron | 15.0% |
!! | AGATATTTCAAAAGAATTTG+TGG | + | chr5.3:17177674-17177693 | MS.gene028028:CDS | 20.0% |
!! | GTAAATTAGTACATATCAAT+TGG | - | chr5.3:17177309-17177328 | None:intergenic | 20.0% |
!!! | TTCTATAATTTGTGATGTAT+AGG | + | chr5.3:17177607-17177626 | MS.gene028028:intron | 20.0% |
! | AGATGCAAATTAATCTTTCT+AGG | + | chr5.3:17177436-17177455 | MS.gene028028:intron | 25.0% |
! | TCATTTAAATCGATATGATG+AGG | - | chr5.3:17176601-17176620 | None:intergenic | 25.0% |
!!! | ATCATATCGATTTAAATGAG+CGG | + | chr5.3:17176602-17176621 | MS.gene028028:CDS | 25.0% |
!!! | TTGGTGGATAAAGTATTTTT+GGG | - | chr5.3:17177733-17177752 | None:intergenic | 25.0% |
!!! | TTTGGTGGATAAAGTATTTT+TGG | - | chr5.3:17177734-17177753 | None:intergenic | 25.0% |
TTCTCAAGTTTCTCTATATC+CGG | - | chr5.3:17177978-17177997 | None:intergenic | 30.0% | |
! | ATCATTAGAGTTTAGAACTG+CGG | - | chr5.3:17176716-17176735 | None:intergenic | 30.0% |
! | CATATCAATTGGTAGTTACA+AGG | - | chr5.3:17177298-17177317 | None:intergenic | 30.0% |
! | TCAAGTGTTTGCATTGTTTT+GGG | + | chr5.3:17177502-17177521 | MS.gene028028:intron | 30.0% |
! | TCTCTACATCTTTCACATTT+TGG | - | chr5.3:17177752-17177771 | None:intergenic | 30.0% |
! | TTCAAGTGTTTGCATTGTTT+TGG | + | chr5.3:17177501-17177520 | MS.gene028028:intron | 30.0% |
AAAAATATGGTAAGGGACGT+TGG | + | chr5.3:17177649-17177668 | MS.gene028028:CDS | 35.0% | |
AATGTTAACTAGTGTCCCAA+GGG | - | chr5.3:17177069-17177088 | None:intergenic | 35.0% | |
ATGTGAAAGATGTAGAGAAG+AGG | + | chr5.3:17177754-17177773 | MS.gene028028:CDS | 35.0% | |
GGAAGTAATGAAGCTAACTT+AGG | + | chr5.3:17176769-17176788 | MS.gene028028:CDS | 35.0% | |
GGGCTAGAAAAATATGGTAA+GGG | + | chr5.3:17177642-17177661 | MS.gene028028:CDS | 35.0% | |
GTAAGTATTCAATCTATCCC+TGG | + | chr5.3:17176876-17176895 | MS.gene028028:intron | 35.0% | |
TTAGCTTCATTACTTCCTTC+AGG | - | chr5.3:17176766-17176785 | None:intergenic | 35.0% | |
! | AGTTTCATTTTGCTGCTCAA+TGG | - | chr5.3:17177868-17177887 | None:intergenic | 35.0% |
! | CTACATCTTTCACATTTTGG+TGG | - | chr5.3:17177749-17177768 | None:intergenic | 35.0% |
! | TGTGATGTATAGGTTGTTTC+TGG | + | chr5.3:17177617-17177636 | MS.gene028028:intron | 35.0% |
!! | ATGTATAGGTTGTTTCTGGA+GGG | + | chr5.3:17177621-17177640 | MS.gene028028:intron | 35.0% |
!!! | GGATAAAGTATTTTTGGGCA+TGG | - | chr5.3:17177728-17177747 | None:intergenic | 35.0% |
AATGCTTAACCAATGCCCTT+GGG | + | chr5.3:17177051-17177070 | MS.gene028028:intron | 40.0% | |
AGTGACTAGACACTCAACTT+TGG | + | chr5.3:17177229-17177248 | MS.gene028028:intron | 40.0% | |
ATTCCTTAACCATTGCCCTA+AGG | - | chr5.3:17176939-17176958 | None:intergenic | 40.0% | |
CAAAATGAAACTCCTCCTCA+AGG | + | chr5.3:17177876-17177895 | MS.gene028028:CDS | 40.0% | |
CAAGGATGTTGATCTACATG+CGG | - | chr5.3:17177280-17177299 | None:intergenic | 40.0% | |
GAATGTTAACTAGTGTCCCA+AGG | - | chr5.3:17177070-17177089 | None:intergenic | 40.0% | |
GGGGCTAGAAAAATATGGTA+AGG | + | chr5.3:17177641-17177660 | MS.gene028028:CDS | 40.0% | |
TGGAAGGAATCTCATCTTGT+TGG | - | chr5.3:17177848-17177867 | None:intergenic | 40.0% | |
TGTTCCATGCTATTCTCAGA+GGG | - | chr5.3:17176643-17176662 | None:intergenic | 40.0% | |
TTCCTTAACCATTGCCCTAA+GGG | - | chr5.3:17176938-17176957 | None:intergenic | 40.0% | |
TTGTGCTTGCTTTGTCCAAT+CGG | + | chr5.3:17177942-17177961 | MS.gene028028:CDS | 40.0% | |
TTGTTCCATGCTATTCTCAG+AGG | - | chr5.3:17176644-17176663 | None:intergenic | 40.0% | |
! | ATTAGAGTTTAGAACTGCGG+CGG | - | chr5.3:17176713-17176732 | None:intergenic | 40.0% |
! | GCATGGCTAGCTATTTGAAT+TGG | - | chr5.3:17177711-17177730 | None:intergenic | 40.0% |
! | TCATTTTGCTGCTCAATGGA+AGG | - | chr5.3:17177864-17177883 | None:intergenic | 40.0% |
! | TCCAATCGGTTCTACAATTC+CGG | + | chr5.3:17177956-17177975 | MS.gene028028:CDS | 40.0% |
!! | GATGTATAGGTTGTTTCTGG+AGG | + | chr5.3:17177620-17177639 | MS.gene028028:intron | 40.0% |
!! | TGTATAGGTTGTTTCTGGAG+GGG | + | chr5.3:17177622-17177641 | MS.gene028028:intron | 40.0% |
CAAGCTGAGTCAGTACAAGA+AGG | + | chr5.3:17176793-17176812 | MS.gene028028:CDS | 45.0% | |
CGACACTGATGTCATTGAGT+CGG | + | chr5.3:17176681-17176700 | MS.gene028028:CDS | 45.0% | |
CTGGAGGGGCTAGAAAAATA+TGG | + | chr5.3:17177636-17177655 | MS.gene028028:CDS | 45.0% | |
GAAGTCGTGAAGCAAAGAGA+GGG | + | chr5.3:17176815-17176834 | MS.gene028028:CDS | 45.0% | |
GAATGCTTAACCAATGCCCT+TGG | + | chr5.3:17177050-17177069 | MS.gene028028:intron | 45.0% | |
GGACAAAGCAAGCACAACAT+AGG | - | chr5.3:17177939-17177958 | None:intergenic | 45.0% | |
TCCGGAATTGTAGAACCGAT+TGG | - | chr5.3:17177960-17177979 | None:intergenic | 45.0% | |
TGAGAAGATGCGCGACTTAT+TGG | + | chr5.3:17177992-17178011 | MS.gene028028:CDS | 45.0% | |
TGTGTCTGTTGCATTCCTTG+AGG | - | chr5.3:17177894-17177913 | None:intergenic | 45.0% | |
! | AGATCCCTCTGAGAATAGCA+TGG | + | chr5.3:17176636-17176655 | MS.gene028028:CDS | 45.0% |
! | TAGGGAAAGGGTACATTGGA+CGG | + | chr5.3:17176840-17176859 | MS.gene028028:CDS | 45.0% |
CAAGCTGAGTCAGTACCTGA+AGG | + | chr5.3:17176748-17176767 | MS.gene028028:CDS | 50.0% | |
GGAAGTCGTGAAGCAAAGAG+AGG | + | chr5.3:17176814-17176833 | MS.gene028028:CDS | 50.0% | |
GTCTGTTGCATTCCTTGAGG+AGG | - | chr5.3:17177891-17177910 | None:intergenic | 50.0% | |
TGCCCTTAGGGCAATGGTTA+AGG | + | chr5.3:17176933-17176952 | MS.gene028028:intron | 50.0% | |
! | AAAGAGAGGGCGTAGGGAAA+GGG | + | chr5.3:17176828-17176847 | MS.gene028028:CDS | 50.0% |
! | AACTAGTGTCCCAAGGGCAT+TGG | - | chr5.3:17177063-17177082 | None:intergenic | 50.0% |
! | GAAAGGGTACATTGGACGGA+AGG | + | chr5.3:17176844-17176863 | MS.gene028028:CDS | 50.0% |
! | TGAAGCAAAGAGAGGGCGTA+GGG | + | chr5.3:17176822-17176841 | MS.gene028028:CDS | 50.0% |
AACCAGTGCCCTTAGGGCAA+TGG | + | chr5.3:17176927-17176946 | MS.gene028028:intron | 55.0% | |
CTTGCCAACCAGTGCCCTTA+GGG | + | chr5.3:17176921-17176940 | MS.gene028028:intron | 55.0% | |
TCTTGCCAACCAGTGCCCTT+AGG | + | chr5.3:17176920-17176939 | MS.gene028028:intron | 55.0% | |
! | AACCATTGCCCTAAGGGCAC+TGG | - | chr5.3:17176932-17176951 | None:intergenic | 55.0% |
! | CAAAGAGAGGGCGTAGGGAA+AGG | + | chr5.3:17176827-17176846 | MS.gene028028:CDS | 55.0% |
! | GGCGTAGGGAAAGGGTACAT+TGG | + | chr5.3:17176836-17176855 | MS.gene028028:CDS | 55.0% |
! | GTGAAGCAAAGAGAGGGCGT+AGG | + | chr5.3:17176821-17176840 | MS.gene028028:CDS | 55.0% |
!! | ATTGCCCTAAGGGCACTGGT+TGG | - | chr5.3:17176928-17176947 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.3 | gene | 17176568 | 17178034 | 17176568 | ID=MS.gene028028 |
chr5.3 | mRNA | 17176568 | 17178034 | 17176568 | ID=MS.gene028028.t1;Parent=MS.gene028028 |
chr5.3 | exon | 17176568 | 17176875 | 17176568 | ID=MS.gene028028.t1.exon1;Parent=MS.gene028028.t1 |
chr5.3 | CDS | 17176568 | 17176875 | 17176568 | ID=cds.MS.gene028028.t1;Parent=MS.gene028028.t1 |
chr5.3 | exon | 17177629 | 17178034 | 17177629 | ID=MS.gene028028.t1.exon2;Parent=MS.gene028028.t1 |
chr5.3 | CDS | 17177629 | 17178034 | 17177629 | ID=cds.MS.gene028028.t1;Parent=MS.gene028028.t1 |
Gene Sequence |
Protein sequence |