Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene028055.t1 | XP_003612622.1 | 94.6 | 332 | 10 | 1 | 1 | 332 | 1 | 324 | 3.70E-149 | 537.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene028055.t1 | Q6ZIK5 | 66.3 | 98 | 25 | 2 | 15 | 104 | 63 | 160 | 1.4e-32 | 141.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene028055.t1 | G7K6W0 | 94.6 | 332 | 10 | 1 | 1 | 332 | 1 | 324 | 2.7e-149 | 537.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene028055.t1 | TF | GRF |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene028055.t1 | MTR_5g027030 | 92.470 | 332 | 17 | 1 | 1 | 332 | 1 | 324 | 0.0 | 587 |
| MS.gene028055.t1 | MTR_0001s0490 | 47.867 | 211 | 75 | 9 | 16 | 213 | 25 | 213 | 1.87e-49 | 168 |
| MS.gene028055.t1 | MTR_4g125490 | 34.432 | 273 | 143 | 7 | 16 | 257 | 9 | 276 | 3.96e-42 | 151 |
| MS.gene028055.t1 | MTR_2g041430 | 60.177 | 113 | 29 | 2 | 16 | 112 | 7 | 119 | 1.64e-40 | 145 |
| MS.gene028055.t1 | MTR_2g041430 | 60.177 | 113 | 29 | 2 | 16 | 112 | 7 | 119 | 1.72e-40 | 145 |
| MS.gene028055.t1 | MTR_2g041430 | 60.177 | 113 | 29 | 2 | 16 | 112 | 7 | 119 | 1.83e-40 | 145 |
| MS.gene028055.t1 | MTR_8g020560 | 58.333 | 108 | 33 | 2 | 17 | 112 | 12 | 119 | 2.67e-39 | 142 |
| MS.gene028055.t1 | MTR_1g017490 | 56.897 | 116 | 34 | 2 | 16 | 115 | 11 | 126 | 9.02e-37 | 138 |
| MS.gene028055.t1 | MTR_1g017490 | 56.897 | 116 | 34 | 2 | 16 | 115 | 144 | 259 | 1.33e-36 | 139 |
| MS.gene028055.t1 | MTR_7g104050 | 59.649 | 114 | 34 | 4 | 17 | 118 | 79 | 192 | 1.40e-35 | 132 |
| MS.gene028055.t1 | MTR_7g104050 | 59.649 | 114 | 34 | 4 | 17 | 118 | 79 | 192 | 1.45e-35 | 133 |
| MS.gene028055.t1 | MTR_3g092330 | 53.000 | 100 | 39 | 2 | 14 | 112 | 111 | 203 | 8.61e-27 | 110 |
| MS.gene028055.t1 | MTR_8g035910 | 36.810 | 163 | 72 | 4 | 15 | 170 | 48 | 186 | 6.96e-20 | 90.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene028055.t1 | AT3G13960 | 57.273 | 110 | 35 | 2 | 15 | 112 | 15 | 124 | 1.10e-38 | 141 |
| MS.gene028055.t1 | AT4G37740 | 40.777 | 206 | 96 | 6 | 16 | 202 | 164 | 362 | 5.61e-38 | 142 |
| MS.gene028055.t1 | AT3G52910 | 56.250 | 112 | 33 | 3 | 17 | 112 | 83 | 194 | 2.83e-33 | 127 |
| MS.gene028055.t1 | AT2G36400 | 54.783 | 115 | 37 | 3 | 17 | 116 | 77 | 191 | 3.80e-33 | 127 |
| MS.gene028055.t1 | AT2G22840 | 54.128 | 109 | 36 | 2 | 16 | 112 | 133 | 239 | 5.32e-31 | 122 |
| MS.gene028055.t1 | AT2G06200 | 50.400 | 125 | 39 | 3 | 9 | 110 | 38 | 162 | 1.49e-30 | 117 |
| MS.gene028055.t1 | AT2G06200 | 52.066 | 121 | 35 | 3 | 13 | 110 | 3 | 123 | 2.56e-30 | 115 |
| MS.gene028055.t1 | AT4G24150 | 46.610 | 118 | 47 | 2 | 17 | 118 | 112 | 229 | 4.12e-24 | 102 |
| MS.gene028055.t1 | AT4G24150 | 46.610 | 118 | 47 | 2 | 17 | 118 | 150 | 267 | 8.87e-24 | 101 |
| MS.gene028055.t1 | AT5G53660 | 49.485 | 97 | 44 | 1 | 16 | 112 | 59 | 150 | 1.29e-22 | 97.4 |
| MS.gene028055.t1 | AT4G24150 | 37.762 | 143 | 48 | 1 | 17 | 118 | 150 | 292 | 1.99e-21 | 95.1 |
| MS.gene028055.t1 | AT2G06200 | 72.917 | 48 | 11 | 1 | 65 | 110 | 4 | 51 | 6.46e-17 | 77.8 |
| MS.gene028055.t1 | AT2G45480 | 39.815 | 108 | 51 | 2 | 15 | 109 | 23 | 129 | 7.22e-17 | 80.1 |
| MS.gene028055.t1 | AT2G45480 | 39.815 | 108 | 51 | 2 | 15 | 109 | 21 | 127 | 2.28e-16 | 80.1 |
| MS.gene028055.t1 | AT2G45480 | 36.458 | 96 | 48 | 3 | 21 | 116 | 269 | 351 | 1.05e-12 | 68.9 |
| MS.gene028055.t1 | AT2G45480 | 39.815 | 108 | 51 | 2 | 15 | 109 | 23 | 129 | 2.34e-16 | 79.7 |
| MS.gene028055.t1 | AT2G45480 | 36.458 | 96 | 48 | 3 | 21 | 116 | 271 | 353 | 1.13e-12 | 68.9 |
Find 75 sgRNAs with CRISPR-Local
Find 214 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCTATGCTTCTTCCTCTTC+AGG | 0.174652 | 5.3:-16791889 | MS.gene028055:CDS |
| CTTCTACACCTACCTGGTTC+TGG | 0.179105 | 5.3:+16792239 | None:intergenic |
| TTTGTTTCAGTGGGTTATTA+TGG | 0.331715 | 5.3:-16792275 | MS.gene028055:intron |
| TTCTACACCTACCTGGTTCT+GGG | 0.343240 | 5.3:+16792240 | None:intergenic |
| TTCCTAGATCCTTCTGTAAG+AGG | 0.359958 | 5.3:+16790075 | None:intergenic |
| GAAGGTTTAAGTTTCAATCT+TGG | 0.362165 | 5.3:-16791933 | MS.gene028055:CDS |
| CCTATGCTTCTTCCTCTTCA+GGG | 0.369011 | 5.3:-16791888 | MS.gene028055:CDS |
| AAGGTTTAAGTTTCAATCTT+GGG | 0.373864 | 5.3:-16791932 | MS.gene028055:CDS |
| GATGTTCTAGCTCTTGCCAT+TGG | 0.387285 | 5.3:+16792476 | None:intergenic |
| TCCAAGGAAATTGTCTTTAA+CGG | 0.387679 | 5.3:-16789876 | MS.gene028055:CDS |
| TTTCAATCAACATTGACATC+TGG | 0.399287 | 5.3:+16789729 | None:intergenic |
| CCTCCTCTGCAATGGAGTAT+AGG | 0.408064 | 5.3:-16789776 | MS.gene028055:CDS |
| ATGTTCTAGCTCTTGCCATT+GGG | 0.417081 | 5.3:+16792477 | None:intergenic |
| GCCGTTAAAGACAATTTCCT+TGG | 0.422082 | 5.3:+16789875 | None:intergenic |
| CTCTCTTCAGTGACTGGCAG+TGG | 0.424103 | 5.3:-16789812 | MS.gene028055:CDS |
| GTTCTCTTGTTGTTCGCTGT+TGG | 0.429758 | 5.3:+16789928 | None:intergenic |
| AGGGTTCTAAGAAACCTTAT+AGG | 0.432493 | 5.3:-16791869 | MS.gene028055:intron |
| CTCAGTCTCTCTTCAGTGAC+TGG | 0.441726 | 5.3:-16789818 | MS.gene028055:CDS |
| CCAGCTAGGTAGTTTGAAAC+AGG | 0.443147 | 5.3:-16789853 | MS.gene028055:CDS |
| ACACTTCCTTTGCACACAAA+TGG | 0.450249 | 5.3:-16791963 | MS.gene028055:CDS |
| CTTGGTGCTGGTGGTTCTAG+TGG | 0.451681 | 5.3:-16792035 | MS.gene028055:CDS |
| CGGTCACAGTACTTAGAATC+AGG | 0.455848 | 5.3:+16792176 | None:intergenic |
| ATCTTCAAGTATCTCAAAGC+TGG | 0.478992 | 5.3:-16792445 | MS.gene028055:CDS |
| GGTTATGACTTCACTTCAGA+TGG | 0.481110 | 5.3:-16790038 | MS.gene028055:CDS |
| CGAATAGGTAAAAGGAGGTC+AGG | 0.485852 | 5.3:+16792409 | None:intergenic |
| TTGGTGTTAAAATCCTTGCT+TGG | 0.489894 | 5.3:+16789753 | None:intergenic |
| ATCAAGGAATTGTTCTTCCA+TGG | 0.491166 | 5.3:-16789967 | MS.gene028055:CDS |
| ATCAACATTGACATCTGGAT+TGG | 0.498766 | 5.3:+16789734 | None:intergenic |
| AACCTCTTACAGAAGGATCT+AGG | 0.500686 | 5.3:-16790077 | MS.gene028055:CDS |
| CAAACACTATTTCAGAATCA+AGG | 0.501303 | 5.3:-16789983 | MS.gene028055:CDS |
| GCGTCGAGGTTAAGCAGCTC+AGG | 0.512667 | 5.3:+16789906 | None:intergenic |
| CTAGGAACTGTGAAGTATCA+AGG | 0.513671 | 5.3:-16790059 | MS.gene028055:CDS |
| ATTCCACAGGCTTTCTTGAA+CGG | 0.519412 | 5.3:+16792132 | None:intergenic |
| CCCTGAAGAGGAAGAAGCAT+AGG | 0.524973 | 5.3:+16791888 | None:intergenic |
| CCTGTTTCAAACTACCTAGC+TGG | 0.525039 | 5.3:+16789853 | None:intergenic |
| ATTGTCTTTAACGGCCAGCT+AGG | 0.529877 | 5.3:-16789867 | MS.gene028055:CDS |
| ACTTCACAGCAACTTGGTGC+TGG | 0.533655 | 5.3:-16792047 | MS.gene028055:CDS |
| CACACAAATGGTACTCGTGA+AGG | 0.536853 | 5.3:-16791951 | MS.gene028055:CDS |
| TCTGTTCTTCTACACCTACC+TGG | 0.541473 | 5.3:+16792233 | None:intergenic |
| TCACAGCAACTTGGTGCTGG+TGG | 0.545124 | 5.3:-16792044 | MS.gene028055:CDS |
| CGAGTACCATTTGTGTGCAA+AGG | 0.548009 | 5.3:+16791957 | None:intergenic |
| TAATAGGTTTGGACTGAACT+CGG | 0.548879 | 5.3:-16790114 | MS.gene028055:intron |
| CCTATACTCCATTGCAGAGG+AGG | 0.551750 | 5.3:+16789776 | None:intergenic |
| TGGGAACACCATGCCCCACA+TGG | 0.552810 | 5.3:-16791913 | MS.gene028055:CDS |
| AGTACTACTTCACAGCAACT+TGG | 0.553505 | 5.3:-16792053 | MS.gene028055:CDS |
| CATAGGGTCCATGTGGGGCA+TGG | 0.558053 | 5.3:+16791905 | None:intergenic |
| AGATTTAGCCTCCTCTGCAA+TGG | 0.559132 | 5.3:-16789784 | MS.gene028055:CDS |
| TTCAACAACCGCCGTTGATG+TGG | 0.565403 | 5.3:-16792528 | MS.gene028055:CDS |
| TGCCATTGGGAGACTGTGAA+CGG | 0.571539 | 5.3:+16792490 | None:intergenic |
| ACTTCACTTCAGATGGGATG+TGG | 0.577262 | 5.3:-16790031 | MS.gene028055:CDS |
| CCTCGACGCTGCAAGATCCA+AGG | 0.587152 | 5.3:-16789892 | MS.gene028055:CDS |
| GAAGAAGAAGAAGATTCCAC+AGG | 0.592735 | 5.3:+16792119 | None:intergenic |
| CCTTGGATCTTGCAGCGTCG+AGG | 0.593781 | 5.3:+16789892 | None:intergenic |
| TGGACTGAACTCGGAAGCAG+AGG | 0.606816 | 5.3:-16790105 | MS.gene028055:CDS |
| GTTATGACTTCACTTCAGAT+GGG | 0.610905 | 5.3:-16790037 | MS.gene028055:CDS |
| CACCGTTCACAGTCTCCCAA+TGG | 0.611493 | 5.3:-16792492 | MS.gene028055:CDS |
| GGAGAACAACCTCTTACAGA+AGG | 0.617644 | 5.3:-16790084 | MS.gene028055:CDS |
| ACTGTGAACGGTGGATGAGT+TGG | 0.621139 | 5.3:+16792502 | None:intergenic |
| GGTAGGTGTAGAAGAACAGA+TGG | 0.627953 | 5.3:-16792230 | MS.gene028055:CDS |
| GGTTTCTTAGAACCCTGAAG+AGG | 0.629209 | 5.3:+16791876 | None:intergenic |
| CCTGAAGAGGAAGAAGCATA+GGG | 0.630158 | 5.3:+16791889 | None:intergenic |
| GTCACTGAAGAGAGACTGAG+AGG | 0.630803 | 5.3:+16789821 | None:intergenic |
| AAGAAGCATAGGGTCCATGT+GGG | 0.631241 | 5.3:+16791899 | None:intergenic |
| GAAGAAGCATAGGGTCCATG+TGG | 0.633928 | 5.3:+16791898 | None:intergenic |
| TGAGTTGGTGACCACATCAA+CGG | 0.634344 | 5.3:+16792517 | None:intergenic |
| GAAGTTGTAGTTGTCAACCA+TGG | 0.647831 | 5.3:+16789950 | None:intergenic |
| TTACCGTTCAAGAAAGCCTG+TGG | 0.651222 | 5.3:-16792135 | MS.gene028055:CDS |
| AATGGAGTATAGGCCAAGCA+AGG | 0.658290 | 5.3:-16789766 | MS.gene028055:CDS |
| AAATTGACCCAGAACCAGGT+AGG | 0.671324 | 5.3:-16792247 | MS.gene028055:CDS |
| TGGCCTATACTCCATTGCAG+AGG | 0.676725 | 5.3:+16789773 | None:intergenic |
| ATAGGTAAAAGGAGGTCAGG+AGG | 0.695933 | 5.3:+16792412 | None:intergenic |
| AACGACGTCGAATCATATGA+CGG | 0.698475 | 5.3:+16792156 | None:intergenic |
| AGAAGCATAGGGTCCATGTG+GGG | 0.720767 | 5.3:+16791900 | None:intergenic |
| CATTGGGAGACTGTGAACGG+TGG | 0.744499 | 5.3:+16792493 | None:intergenic |
| GTTGGTGACCACATCAACGG+CGG | 0.749963 | 5.3:+16792520 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATGATTTTACTTTTTATA+AGG | - | chr5.3:16791877-16791896 | MS.gene028055:CDS | 10.0% |
| !! | AAAAAAGAAAAAAAGAGAAA+TGG | - | chr5.3:16791812-16791831 | MS.gene028055:intron | 15.0% |
| !! | CAAATAGATATAAAATGAAA+TGG | + | chr5.3:16791479-16791498 | None:intergenic | 15.0% |
| !!! | ATACTTTATTTTATTCAACT+TGG | - | chr5.3:16790906-16790925 | MS.gene028055:intron | 15.0% |
| !!! | CATTTCATTTTATATCTATT+TGG | - | chr5.3:16791477-16791496 | MS.gene028055:intron | 15.0% |
| !!! | GGATATTAATATTTTTATGA+AGG | - | chr5.3:16791926-16791945 | MS.gene028055:CDS | 15.0% |
| !!! | GTTTATTCTTTACTTTTAAA+TGG | - | chr5.3:16791598-16791617 | MS.gene028055:intron | 15.0% |
| !!! | TATTAATATTTTTATGAAGG+TGG | - | chr5.3:16791929-16791948 | MS.gene028055:CDS | 15.0% |
| !!! | TGATATGATTTTTTAATTCT+AGG | - | chr5.3:16791500-16791519 | MS.gene028055:intron | 15.0% |
| !!! | TTTTATATCTTTATGTTAGA+TGG | - | chr5.3:16790735-16790754 | MS.gene028055:intron | 15.0% |
| !! | AAAAAAGAAACATACCTATA+AGG | + | chr5.3:16790414-16790433 | None:intergenic | 20.0% |
| !! | AATCAATTGTGTAAACAAAA+AGG | + | chr5.3:16790717-16790736 | None:intergenic | 20.0% |
| !! | ATCAAAATAGAGACAAAATA+AGG | + | chr5.3:16789940-16789959 | None:intergenic | 20.0% |
| !! | ATCGAATAAATAATGTGAAA+AGG | + | chr5.3:16791083-16791102 | None:intergenic | 20.0% |
| !! | TGCAGAAATAATTACTTAAT+CGG | - | chr5.3:16790949-16790968 | MS.gene028055:intron | 20.0% |
| !!! | ACTTTTTATAAGGAATTTGT+AGG | - | chr5.3:16791887-16791906 | MS.gene028055:CDS | 20.0% |
| !!! | TGTTTCTTTTGTTTTCAATA+AGG | - | chr5.3:16790444-16790463 | MS.gene028055:intron | 20.0% |
| !!! | TTAAGTATTTTAGAAGTTGT+TGG | - | chr5.3:16792064-16792083 | MS.gene028055:CDS | 20.0% |
| ! | AATAATTACTTAATCGGGTT+TGG | - | chr5.3:16790955-16790974 | MS.gene028055:intron | 25.0% |
| ! | ATTTCAAATGACCATCAAAA+AGG | + | chr5.3:16791011-16791030 | None:intergenic | 25.0% |
| ! | GCAGAAATAATTACTTAATC+GGG | - | chr5.3:16790950-16790969 | MS.gene028055:intron | 25.0% |
| ! | TAATGATTCAACTCAATTCA+TGG | - | chr5.3:16791983-16792002 | MS.gene028055:CDS | 25.0% |
| ! | TGATAGAGTTAAAGCAATTA+AGG | - | chr5.3:16791232-16791251 | MS.gene028055:intron | 25.0% |
| ! | TTAAGACTAAAGACAAATGT+CGG | + | chr5.3:16791285-16791304 | None:intergenic | 25.0% |
| ! | TTGATAAGATTGGAAATCAA+GGG | - | chr5.3:16791154-16791173 | MS.gene028055:intron | 25.0% |
| ! | TTTATGTTAGATGGAAAACA+TGG | - | chr5.3:16790744-16790763 | MS.gene028055:intron | 25.0% |
| ! | TTTGATAAGATTGGAAATCA+AGG | - | chr5.3:16791153-16791172 | MS.gene028055:intron | 25.0% |
| !! | AAGGTTTAAGTTTCAATCTT+GGG | - | chr5.3:16790334-16790353 | MS.gene028055:intron | 25.0% |
| !! | ATGTTTGTGTATTTGTGTTT+TGG | - | chr5.3:16790617-16790636 | MS.gene028055:intron | 25.0% |
| !! | TGTTTGTGTATTTGTGTTTT+GGG | - | chr5.3:16790618-16790637 | MS.gene028055:intron | 25.0% |
| !!! | AATGGATTAAACATTATAGC+AGG | - | chr5.3:16791830-16791849 | MS.gene028055:intron | 25.0% |
| !!! | TGAATTGAGTTGAATCATTA+AGG | + | chr5.3:16791983-16792002 | None:intergenic | 25.0% |
| !!! | TTGTTTTTTTTTCCTTTTCC+TGG | - | chr5.3:16791700-16791719 | MS.gene028055:intron | 25.0% |
| !!! | TTTGTGATTTTTGTTTCAGT+GGG | - | chr5.3:16789982-16790001 | MS.gene028055:CDS | 25.0% |
| !!! | TTTTGTGATTTTTGTTTCAG+TGG | - | chr5.3:16789981-16790000 | MS.gene028055:CDS | 25.0% |
| AAATTGCAAAAGACTACATG+TGG | + | chr5.3:16792039-16792058 | None:intergenic | 30.0% | |
| AACACACTCAATAATAGGTT+TGG | - | chr5.3:16792141-16792160 | MS.gene028055:CDS | 30.0% | |
| AACTGAACACACTCAATAAT+AGG | - | chr5.3:16792136-16792155 | MS.gene028055:CDS | 30.0% | |
| AAGTTACATAACATGTGATG+TGG | - | chr5.3:16790780-16790799 | MS.gene028055:intron | 30.0% | |
| AGTTGAATCATTAAGGCTTA+AGG | + | chr5.3:16791976-16791995 | None:intergenic | 30.0% | |
| ATAAGGAAGATTAACGTTGT+TGG | + | chr5.3:16789923-16789942 | None:intergenic | 30.0% | |
| ATTATGGGATAACATGTTGA+AGG | - | chr5.3:16791439-16791458 | MS.gene028055:intron | 30.0% | |
| ATTGGAAATCAAGGGAATTA+TGG | - | chr5.3:16791162-16791181 | MS.gene028055:intron | 30.0% | |
| CAAACACTATTTCAGAATCA+AGG | - | chr5.3:16792283-16792302 | MS.gene028055:intron | 30.0% | |
| GATAACATGTTGAAGGAATT+TGG | - | chr5.3:16791446-16791465 | MS.gene028055:intron | 30.0% | |
| TAACTCTTCACAAGAAATCA+TGG | + | chr5.3:16790679-16790698 | None:intergenic | 30.0% | |
| TAAGGAAGATTAACGTTGTT+GGG | + | chr5.3:16789922-16789941 | None:intergenic | 30.0% | |
| TAGTTCACTCACATCTAAAA+AGG | + | chr5.3:16791122-16791141 | None:intergenic | 30.0% | |
| TCCAAGGAAATTGTCTTTAA+CGG | - | chr5.3:16792390-16792409 | MS.gene028055:CDS | 30.0% | |
| TGTCATTGATACTATGTAGA+TGG | - | chr5.3:16791738-16791757 | MS.gene028055:intron | 30.0% | |
| ! | AATTGAAGACTTTTCCGAAT+AGG | + | chr5.3:16789875-16789894 | None:intergenic | 30.0% |
| ! | ACTTGATGATTATCCAGAAA+GGG | - | chr5.3:16791394-16791413 | MS.gene028055:intron | 30.0% |
| ! | GAAGGTTTAAGTTTCAATCT+TGG | - | chr5.3:16790333-16790352 | MS.gene028055:intron | 30.0% |
| ! | GTTTGTGTATTTGTGTTTTG+GGG | - | chr5.3:16790619-16790638 | MS.gene028055:intron | 30.0% |
| ! | TACTTGATGATTATCCAGAA+AGG | - | chr5.3:16791393-16791412 | MS.gene028055:intron | 30.0% |
| ! | TTTTGTATAACCCTCTTGTT+CGG | - | chr5.3:16790480-16790499 | MS.gene028055:intron | 30.0% |
| !! | AAATCATGACTTGGTATTCT+GGG | - | chr5.3:16791027-16791046 | MS.gene028055:intron | 30.0% |
| !! | TTTGTTTCAGTGGGTTATTA+TGG | - | chr5.3:16789991-16790010 | MS.gene028055:CDS | 30.0% |
| AAAAAAATTGACCCAGAACC+AGG | - | chr5.3:16790015-16790034 | MS.gene028055:CDS | 35.0% | |
| AGATGACGACATCTAATTGA+TGG | + | chr5.3:16791526-16791545 | None:intergenic | 35.0% | |
| AGGGCATGATTTGATAAGAT+TGG | - | chr5.3:16791144-16791163 | MS.gene028055:intron | 35.0% | |
| AGTCAAACAAGAATGCAAGT+AGG | + | chr5.3:16791578-16791597 | None:intergenic | 35.0% | |
| ATCAACATTGACATCTGGAT+TGG | + | chr5.3:16792535-16792554 | None:intergenic | 35.0% | |
| ATCAAGGAATTGTTCTTCCA+TGG | - | chr5.3:16792299-16792318 | MS.gene028055:intron | 35.0% | |
| ATCTTCAAGTATCTCAAAGC+TGG | - | chr5.3:16789821-16789840 | MS.gene028055:CDS | 35.0% | |
| ATGAAATGAACATGCTGTAG+TGG | - | chr5.3:16791763-16791782 | MS.gene028055:intron | 35.0% | |
| CAAAAAATGGAGATGTGCTA+GGG | - | chr5.3:16790059-16790078 | MS.gene028055:CDS | 35.0% | |
| CACATTATTTATTCGATGCC+TGG | - | chr5.3:16791086-16791105 | MS.gene028055:intron | 35.0% | |
| GAAGAACAGATGGCAAAAAA+TGG | - | chr5.3:16790046-16790065 | MS.gene028055:CDS | 35.0% | |
| GAGTTAAAGCAATTAAGGAG+AGG | - | chr5.3:16791237-16791256 | MS.gene028055:intron | 35.0% | |
| GTGTTCAGTTAACATCATGA+TGG | + | chr5.3:16792126-16792145 | None:intergenic | 35.0% | |
| GTTATGACTTCACTTCAGAT+GGG | - | chr5.3:16792229-16792248 | MS.gene028055:CDS | 35.0% | |
| TAAGGAATTTGTAGGATCTG+AGG | - | chr5.3:16791895-16791914 | MS.gene028055:CDS | 35.0% | |
| TAATAGGTTTGGACTGAACT+CGG | - | chr5.3:16792152-16792171 | MS.gene028055:CDS | 35.0% | |
| TAGATGTGAGTGAACTAAGA+GGG | - | chr5.3:16791125-16791144 | MS.gene028055:intron | 35.0% | |
| TCAATGACAATGTCCATTGA+TGG | + | chr5.3:16791727-16791746 | None:intergenic | 35.0% | |
| TGAAATGAACATGCTGTAGT+GGG | - | chr5.3:16791764-16791783 | MS.gene028055:intron | 35.0% | |
| TTAGATGTGAGTGAACTAAG+AGG | - | chr5.3:16791124-16791143 | MS.gene028055:intron | 35.0% | |
| TTTGTATAACCCTCTTGTTC+GGG | - | chr5.3:16790481-16790500 | MS.gene028055:intron | 35.0% | |
| ! | GACTTTTCCGAATAGGTAAA+AGG | + | chr5.3:16789868-16789887 | None:intergenic | 35.0% |
| ! | GGATTGAATTGCCTTTTTGA+TGG | - | chr5.3:16790997-16791016 | MS.gene028055:intron | 35.0% |
| ! | GGTCATTTGAAATCATGACT+TGG | - | chr5.3:16791018-16791037 | MS.gene028055:intron | 35.0% |
| ! | TAAAGACAAATGTCGGTTAG+TGG | + | chr5.3:16791278-16791297 | None:intergenic | 35.0% |
| ! | TTATAGCAGGAGTTGTGTTT+TGG | - | chr5.3:16791843-16791862 | MS.gene028055:intron | 35.0% |
| ! | TTTTCCGAATAGGTAAAAGG+AGG | + | chr5.3:16789865-16789884 | None:intergenic | 35.0% |
| !! | AGGGTTCTAAGAAACCTTAT+AGG | - | chr5.3:16790397-16790416 | MS.gene028055:intron | 35.0% |
| !! | ATAGCTTTGAGCTGGTATTA+TGG | - | chr5.3:16791423-16791442 | MS.gene028055:intron | 35.0% |
| !! | GAAATCATGACTTGGTATTC+TGG | - | chr5.3:16791026-16791045 | MS.gene028055:intron | 35.0% |
| !! | TAGCTTTGAGCTGGTATTAT+GGG | - | chr5.3:16791424-16791443 | MS.gene028055:intron | 35.0% |
| !! | TTGGTGTTAAAATCCTTGCT+TGG | + | chr5.3:16792516-16792535 | None:intergenic | 35.0% |
| !!! | GGCATTGGTAAAAGATTTTG+TGG | - | chr5.3:16790976-16790995 | MS.gene028055:intron | 35.0% |
| AACCTCTTACAGAAGGATCT+AGG | - | chr5.3:16792189-16792208 | MS.gene028055:CDS | 40.0% | |
| AACGACGTCGAATCATATGA+CGG | + | chr5.3:16790113-16790132 | None:intergenic | 40.0% | |
| AATGGAACGCATTGTAGTCT+TGG | - | chr5.3:16791616-16791635 | MS.gene028055:intron | 40.0% | |
| ACACTTCCTTTGCACACAAA+TGG | - | chr5.3:16790303-16790322 | MS.gene028055:intron | 40.0% | |
| AGTACTACTTCACAGCAACT+TGG | - | chr5.3:16790213-16790232 | MS.gene028055:intron | 40.0% | |
| ATCCTTATCATGTGTGTGTG+GGG | - | chr5.3:16790803-16790822 | MS.gene028055:intron | 40.0% | |
| ATTCCACAGGCTTTCTTGAA+CGG | + | chr5.3:16790137-16790156 | None:intergenic | 40.0% | |
| CAAACAAGAATGCAAGTAGG+AGG | + | chr5.3:16791575-16791594 | None:intergenic | 40.0% | |
| CAACTCAATTCATGGCTACA+TGG | - | chr5.3:16791991-16792010 | MS.gene028055:CDS | 40.0% | |
| CAAGCCTAACTCCAAAACTA+TGG | + | chr5.3:16790861-16790880 | None:intergenic | 40.0% | |
| CTGGATAATCATCAAGTAGC+AGG | + | chr5.3:16791391-16791410 | None:intergenic | 40.0% | |
| GAAGAAGAAGAAGATTCCAC+AGG | + | chr5.3:16790150-16790169 | None:intergenic | 40.0% | |
| GAAGTTGTAGTTGTCAACCA+TGG | + | chr5.3:16792319-16792338 | None:intergenic | 40.0% | |
| GACCTTAGTAATCCAGAGTT+CGG | - | chr5.3:16790510-16790529 | MS.gene028055:intron | 40.0% | |
| GATCCTTATCATGTGTGTGT+GGG | - | chr5.3:16790802-16790821 | MS.gene028055:intron | 40.0% | |
| GCAAAAAATGGAGATGTGCT+AGG | - | chr5.3:16790058-16790077 | MS.gene028055:CDS | 40.0% | |
| GCCGTTAAAGACAATTTCCT+TGG | + | chr5.3:16792394-16792413 | None:intergenic | 40.0% | |
| GGTTATGACTTCACTTCAGA+TGG | - | chr5.3:16792228-16792247 | MS.gene028055:CDS | 40.0% | |
| GTGTTCAATGCGATCTAACA+AGG | - | chr5.3:16791653-16791672 | MS.gene028055:intron | 40.0% | |
| GTTAGATGCTAGTTAGACGT+TGG | + | chr5.3:16791363-16791382 | None:intergenic | 40.0% | |
| TAAAAAGGCGAACAATGACC+AGG | + | chr5.3:16791107-16791126 | None:intergenic | 40.0% | |
| TACTTAATCGGGTTTGGCAT+TGG | - | chr5.3:16790961-16790980 | MS.gene028055:intron | 40.0% | |
| TGATGATTATCCAGAAAGGG+TGG | - | chr5.3:16791397-16791416 | MS.gene028055:intron | 40.0% | |
| TTCCTAGATCCTTCTGTAAG+AGG | + | chr5.3:16792194-16792213 | None:intergenic | 40.0% | |
| TTGTATAACCCTCTTGTTCG+GGG | - | chr5.3:16790482-16790501 | MS.gene028055:intron | 40.0% | |
| ! | AAGTCATCTGGCCATAGTTT+TGG | - | chr5.3:16790847-16790866 | MS.gene028055:intron | 40.0% |
| ! | CTAGGAACTGTGAAGTATCA+AGG | - | chr5.3:16792207-16792226 | MS.gene028055:CDS | 40.0% |
| ! | CTGACCTCCTTTTACCTATT+CGG | - | chr5.3:16789858-16789877 | MS.gene028055:CDS | 40.0% |
| ! | GGTTAGTTATGACCAAACTC+CGG | + | chr5.3:16791342-16791361 | None:intergenic | 40.0% |
| ! | GTAGGATCTGAGGTATGAAA+TGG | - | chr5.3:16791905-16791924 | MS.gene028055:CDS | 40.0% |
| !! | ATGTTCTAGCTCTTGCCATT+GGG | + | chr5.3:16789792-16789811 | None:intergenic | 40.0% |
| !! | TGTCTTTAGTCTTAACCCTC+CGG | - | chr5.3:16791290-16791309 | MS.gene028055:intron | 40.0% |
| AAATTGACCCAGAACCAGGT+AGG | - | chr5.3:16790019-16790038 | MS.gene028055:CDS | 45.0% | |
| AAGCTATGAACCACCCTTTC+TGG | + | chr5.3:16791410-16791429 | None:intergenic | 45.0% | |
| AATGGAGTATAGGCCAAGCA+AGG | - | chr5.3:16792500-16792519 | MS.gene028055:CDS | 45.0% | |
| AATTCATGGCTACATGGCCT+CGG | - | chr5.3:16791997-16792016 | MS.gene028055:CDS | 45.0% | |
| ACTTCACTTCAGATGGGATG+TGG | - | chr5.3:16792235-16792254 | MS.gene028055:CDS | 45.0% | |
| AGAGTAAGGTGCAAGTCATC+TGG | - | chr5.3:16790835-16790854 | MS.gene028055:intron | 45.0% | |
| AGATTTAGCCTCCTCTGCAA+TGG | - | chr5.3:16792482-16792501 | MS.gene028055:CDS | 45.0% | |
| ATAGGTAAAAGGAGGTCAGG+AGG | + | chr5.3:16789857-16789876 | None:intergenic | 45.0% | |
| ATTGTCTTTAACGGCCAGCT+AGG | - | chr5.3:16792399-16792418 | MS.gene028055:CDS | 45.0% | |
| CACACAAATGGTACTCGTGA+AGG | - | chr5.3:16790315-16790334 | MS.gene028055:intron | 45.0% | |
| CATTTCCTCAAAACCCCACA+AGG | + | chr5.3:16790652-16790671 | None:intergenic | 45.0% | |
| CCTATGCTTCTTCCTCTTCA+GGG | - | chr5.3:16790378-16790397 | MS.gene028055:intron | 45.0% | |
| CCTGTTTCAAACTACCTAGC+TGG | + | chr5.3:16792416-16792435 | None:intergenic | 45.0% | |
| CGAATAGGTAAAAGGAGGTC+AGG | + | chr5.3:16789860-16789879 | None:intergenic | 45.0% | |
| CGAGTACCATTTGTGTGCAA+AGG | + | chr5.3:16790312-16790331 | None:intergenic | 45.0% | |
| CGGTCACAGTACTTAGAATC+AGG | + | chr5.3:16790093-16790112 | None:intergenic | 45.0% | |
| GGAGAACAACCTCTTACAGA+AGG | - | chr5.3:16792182-16792201 | MS.gene028055:CDS | 45.0% | |
| GGATCCTTATCATGTGTGTG+TGG | - | chr5.3:16790801-16790820 | MS.gene028055:intron | 45.0% | |
| GGTAGGTGTAGAAGAACAGA+TGG | - | chr5.3:16790036-16790055 | MS.gene028055:CDS | 45.0% | |
| GGTTTCTTAGAACCCTGAAG+AGG | + | chr5.3:16790393-16790412 | None:intergenic | 45.0% | |
| GTTGTTGGGTTCTTACGAGA+TGG | + | chr5.3:16789908-16789927 | None:intergenic | 45.0% | |
| TCTGTTCTTCTACACCTACC+TGG | + | chr5.3:16790036-16790055 | None:intergenic | 45.0% | |
| TGGGGTGAGATTTGAGAGTA+AGG | - | chr5.3:16790821-16790840 | MS.gene028055:intron | 45.0% | |
| TGTATAACCCTCTTGTTCGG+GGG | - | chr5.3:16790483-16790502 | MS.gene028055:intron | 45.0% | |
| TTACCGTTCAAGAAAGCCTG+TGG | - | chr5.3:16790131-16790150 | MS.gene028055:intron | 45.0% | |
| TTAGTAATCCAGAGTTCGGC+CGG | - | chr5.3:16790514-16790533 | MS.gene028055:intron | 45.0% | |
| ! | AAGAAGCATAGGGTCCATGT+GGG | + | chr5.3:16790370-16790389 | None:intergenic | 45.0% |
| ! | ACAATGTCCATTGATGGACC+AGG | + | chr5.3:16791721-16791740 | None:intergenic | 45.0% |
| ! | CCAGCTAGGTAGTTTGAAAC+AGG | - | chr5.3:16792413-16792432 | MS.gene028055:CDS | 45.0% |
| ! | CCTGAAGAGGAAGAAGCATA+GGG | + | chr5.3:16790380-16790399 | None:intergenic | 45.0% |
| ! | GATCCTGATGTTTAAGACCG+AGG | + | chr5.3:16792017-16792036 | None:intergenic | 45.0% |
| ! | TCCATTGATGGACCAGGAAA+AGG | + | chr5.3:16791715-16791734 | None:intergenic | 45.0% |
| ! | TCCTTTTCCTGGTCCATCAA+TGG | - | chr5.3:16791711-16791730 | MS.gene028055:intron | 45.0% |
| ! | TTCTACACCTACCTGGTTCT+GGG | + | chr5.3:16790029-16790048 | None:intergenic | 45.0% |
| ! | TTTTGCCTTGTGGGGTTTTG+AGG | - | chr5.3:16790644-16790663 | MS.gene028055:intron | 45.0% |
| !! | GATGTTCTAGCTCTTGCCAT+TGG | + | chr5.3:16789793-16789812 | None:intergenic | 45.0% |
| !! | GTTCTCTTGTTGTTCGCTGT+TGG | + | chr5.3:16792341-16792360 | None:intergenic | 45.0% |
| !! | TGAGTTGGTGACCACATCAA+CGG | + | chr5.3:16789752-16789771 | None:intergenic | 45.0% |
| !! | TTTGGGGTGTTTTGCCTTGT+GGG | - | chr5.3:16790635-16790654 | MS.gene028055:intron | 45.0% |
| !!! | CTGGCCATAGTTTTGGAGTT+AGG | - | chr5.3:16790854-16790873 | MS.gene028055:intron | 45.0% |
| !!! | TTTTGGGGTGTTTTGCCTTG+TGG | - | chr5.3:16790634-16790653 | MS.gene028055:intron | 45.0% |
| ACTACCAGAGCCTCTTCTCT+TGG | + | chr5.3:16791319-16791338 | None:intergenic | 50.0% | |
| ACTGTGAACGGTGGATGAGT+TGG | + | chr5.3:16789767-16789786 | None:intergenic | 50.0% | |
| CACCCCACACACACATGATA+AGG | + | chr5.3:16790808-16790827 | None:intergenic | 50.0% | |
| CCCTATGCTTCTTCCTCTTC+AGG | - | chr5.3:16790377-16790396 | MS.gene028055:intron | 50.0% | |
| CCTATACTCCATTGCAGAGG+AGG | + | chr5.3:16792493-16792512 | None:intergenic | 50.0% | |
| CCTCCTCTGCAATGGAGTAT+AGG | - | chr5.3:16792490-16792509 | MS.gene028055:CDS | 50.0% | |
| CTACCAGAGCCTCTTCTCTT+GGG | + | chr5.3:16791318-16791337 | None:intergenic | 50.0% | |
| CTCAGTCTCTCTTCAGTGAC+TGG | - | chr5.3:16792448-16792467 | MS.gene028055:CDS | 50.0% | |
| CTTCTACACCTACCTGGTTC+TGG | + | chr5.3:16790030-16790049 | None:intergenic | 50.0% | |
| GCCAGACTTTACTTACCTCC+CGG | + | chr5.3:16790536-16790555 | None:intergenic | 50.0% | |
| GGCCGAACTCTGGATTACTA+AGG | + | chr5.3:16790515-16790534 | None:intergenic | 50.0% | |
| GTATAACCCTCTTGTTCGGG+GGG | - | chr5.3:16790484-16790503 | MS.gene028055:intron | 50.0% | |
| GTCACTGAAGAGAGACTGAG+AGG | + | chr5.3:16792448-16792467 | None:intergenic | 50.0% | |
| TAGTAATCCAGAGTTCGGCC+GGG | - | chr5.3:16790515-16790534 | MS.gene028055:intron | 50.0% | |
| TGCCATTGGGAGACTGTGAA+CGG | + | chr5.3:16789779-16789798 | None:intergenic | 50.0% | |
| TGGCCTATACTCCATTGCAG+AGG | + | chr5.3:16792496-16792515 | None:intergenic | 50.0% | |
| TGGCCTCGGTCTTAAACATC+AGG | - | chr5.3:16792011-16792030 | MS.gene028055:CDS | 50.0% | |
| TTCAACAACCGCCGTTGATG+TGG | - | chr5.3:16789738-16789757 | MS.gene028055:CDS | 50.0% | |
| ! | AGAAGCATAGGGTCCATGTG+GGG | + | chr5.3:16790369-16790388 | None:intergenic | 50.0% |
| ! | CCCTGAAGAGGAAGAAGCAT+AGG | + | chr5.3:16790381-16790400 | None:intergenic | 50.0% |
| ! | GAAGAAGCATAGGGTCCATG+TGG | + | chr5.3:16790371-16790390 | None:intergenic | 50.0% |
| !! | ACTTCACAGCAACTTGGTGC+TGG | - | chr5.3:16790219-16790238 | MS.gene028055:intron | 50.0% |
| !! | GGTGGTTCATAGCTTTGAGC+TGG | - | chr5.3:16791415-16791434 | MS.gene028055:intron | 50.0% |
| !! | TTGGGGTGTTTTGCCTTGTG+GGG | - | chr5.3:16790636-16790655 | MS.gene028055:intron | 50.0% |
| CACCGTTCACAGTCTCCCAA+TGG | - | chr5.3:16789774-16789793 | MS.gene028055:CDS | 55.0% | |
| CATTGGGAGACTGTGAACGG+TGG | + | chr5.3:16789776-16789795 | None:intergenic | 55.0% | |
| CTCTCTTCAGTGACTGGCAG+TGG | - | chr5.3:16792454-16792473 | MS.gene028055:CDS | 55.0% | |
| CTCTTCTCTTGGGAACCGGA+GGG | + | chr5.3:16791308-16791327 | None:intergenic | 55.0% | |
| GAGCCTCTTCTCTTGGGAAC+CGG | + | chr5.3:16791312-16791331 | None:intergenic | 55.0% | |
| GCCGGGAGGTAAGTAAAGTC+TGG | - | chr5.3:16790532-16790551 | MS.gene028055:intron | 55.0% | |
| GTTCCCAAGAGAAGAGGCTC+TGG | - | chr5.3:16791312-16791331 | MS.gene028055:intron | 55.0% | |
| TGGACTGAACTCGGAAGCAG+AGG | - | chr5.3:16792161-16792180 | MS.gene028055:CDS | 55.0% | |
| ! | GAGAAGAGGCTCTGGTAGTC+CGG | - | chr5.3:16791320-16791339 | MS.gene028055:intron | 55.0% |
| !! | CTTGGTGCTGGTGGTTCTAG+TGG | - | chr5.3:16790231-16790250 | MS.gene028055:intron | 55.0% |
| !! | GTTGGTGACCACATCAACGG+CGG | + | chr5.3:16789749-16789768 | None:intergenic | 55.0% |
| !! | TCACAGCAACTTGGTGCTGG+TGG | - | chr5.3:16790222-16790241 | MS.gene028055:intron | 55.0% |
| AACCCTCTTGTTCGGGGGGA+GGG | - | chr5.3:16790488-16790507 | MS.gene028055:intron | 60.0% | |
| CATAGGGTCCATGTGGGGCA+TGG | + | chr5.3:16790364-16790383 | None:intergenic | 60.0% | |
| CCTCCGGTTCCCAAGAGAAG+AGG | - | chr5.3:16791306-16791325 | MS.gene028055:intron | 60.0% | |
| CCTCGACGCTGCAAGATCCA+AGG | - | chr5.3:16792374-16792393 | MS.gene028055:intron | 60.0% | |
| CCTCTTCTCTTGGGAACCGG+AGG | + | chr5.3:16791309-16791328 | None:intergenic | 60.0% | |
| CCTTGGATCTTGCAGCGTCG+AGG | + | chr5.3:16792377-16792396 | None:intergenic | 60.0% | |
| GCGTCGAGGTTAAGCAGCTC+AGG | + | chr5.3:16792363-16792382 | None:intergenic | 60.0% | |
| TAACCCTCTTGTTCGGGGGG+AGG | - | chr5.3:16790487-16790506 | MS.gene028055:intron | 60.0% | |
| TAATCCAGAGTTCGGCCGGG+AGG | - | chr5.3:16790518-16790537 | MS.gene028055:intron | 60.0% | |
| TGGGAACACCATGCCCCACA+TGG | - | chr5.3:16790353-16790372 | MS.gene028055:intron | 60.0% | |
| ! | GGCTCTGGTAGTCCGGAGTT+TGG | - | chr5.3:16791327-16791346 | MS.gene028055:intron | 60.0% |
| CTTACCTCCCGGCCGAACTC+TGG | + | chr5.3:16790525-16790544 | None:intergenic | 65.0% | |
| GTCCCTCCCCCCGAACAAGA+GGG | + | chr5.3:16790493-16790512 | None:intergenic | 65.0% | |
| GGTCCCTCCCCCCGAACAAG+AGG | + | chr5.3:16790494-16790513 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 16789731 | 16792557 | 16789731 | ID=MS.gene028055 |
| chr5.3 | mRNA | 16789731 | 16792557 | 16789731 | ID=MS.gene028055.t1;Parent=MS.gene028055 |
| chr5.3 | exon | 16792377 | 16792557 | 16792377 | ID=MS.gene028055.t1.exon1;Parent=MS.gene028055.t1 |
| chr5.3 | CDS | 16792377 | 16792557 | 16792377 | ID=cds.MS.gene028055.t1;Parent=MS.gene028055.t1 |
| chr5.3 | exon | 16791870 | 16792287 | 16791870 | ID=MS.gene028055.t1.exon2;Parent=MS.gene028055.t1 |
| chr5.3 | CDS | 16791870 | 16792287 | 16791870 | ID=cds.MS.gene028055.t1;Parent=MS.gene028055.t1 |
| chr5.3 | exon | 16789731 | 16790130 | 16789731 | ID=MS.gene028055.t1.exon3;Parent=MS.gene028055.t1 |
| chr5.3 | CDS | 16789731 | 16790130 | 16789731 | ID=cds.MS.gene028055.t1;Parent=MS.gene028055.t1 |
| Gene Sequence |
| Protein sequence |
