Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene028112.t1 | XP_003612572.1 | 91.7 | 289 | 21 | 1 | 1 | 286 | 1 | 289 | 1.70E-98 | 369.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene028112.t1 | O80450 | 55.0 | 262 | 105 | 4 | 26 | 286 | 26 | 275 | 5.8e-23 | 109.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene028112.t1 | G7K6R0 | 91.7 | 289 | 21 | 1 | 1 | 286 | 1 | 289 | 1.2e-98 | 369.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene028112.t1 | TF | Trihelix |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene028112.t1 | MTR_5g026540 | 97.232 | 289 | 5 | 1 | 1 | 286 | 1 | 289 | 0.0 | 569 |
| MS.gene028112.t1 | MTR_4g015680 | 49.180 | 244 | 108 | 5 | 44 | 286 | 40 | 268 | 2.44e-51 | 171 |
| MS.gene028112.t1 | MTR_7g068770 | 46.538 | 260 | 124 | 5 | 28 | 286 | 35 | 280 | 2.15e-46 | 159 |
| MS.gene028112.t1 | MTR_3g085960 | 50.820 | 61 | 30 | 0 | 46 | 106 | 77 | 137 | 7.78e-14 | 72.0 |
| MS.gene028112.t1 | MTR_2g026725 | 31.356 | 118 | 70 | 3 | 30 | 138 | 241 | 356 | 4.08e-13 | 69.7 |
| MS.gene028112.t1 | MTR_1g098870 | 33.684 | 95 | 60 | 1 | 41 | 132 | 368 | 462 | 2.15e-12 | 67.8 |
| MS.gene028112.t1 | MTR_1g098900 | 33.696 | 92 | 56 | 3 | 46 | 133 | 455 | 545 | 5.57e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene028112.t1 | AT2G38250 | 43.939 | 264 | 131 | 5 | 26 | 286 | 26 | 275 | 1.27e-46 | 159 |
| MS.gene028112.t1 | AT5G01380 | 39.643 | 280 | 140 | 6 | 26 | 286 | 33 | 302 | 1.28e-36 | 134 |
| MS.gene028112.t1 | AT1G13450 | 40.449 | 89 | 52 | 1 | 46 | 133 | 87 | 175 | 2.78e-15 | 74.3 |
| MS.gene028112.t1 | AT1G13450 | 40.449 | 89 | 52 | 1 | 46 | 133 | 87 | 175 | 5.22e-15 | 74.3 |
| MS.gene028112.t1 | AT1G13450 | 40.449 | 89 | 52 | 1 | 46 | 133 | 87 | 175 | 5.22e-15 | 74.3 |
| MS.gene028112.t1 | AT1G13450 | 40.449 | 89 | 52 | 1 | 46 | 133 | 87 | 175 | 1.44e-14 | 74.3 |
| MS.gene028112.t1 | AT3G25990 | 39.785 | 93 | 48 | 2 | 46 | 132 | 55 | 145 | 2.11e-14 | 73.6 |
| MS.gene028112.t1 | AT1G76890 | 34.711 | 121 | 74 | 3 | 19 | 135 | 371 | 490 | 1.29e-13 | 71.6 |
| MS.gene028112.t1 | AT1G76880 | 34.579 | 107 | 60 | 4 | 30 | 132 | 398 | 498 | 2.65e-11 | 64.7 |
Find 81 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACTTGCATTTACACTGTTC+AGG | 0.240715 | 5.3:+16463000 | None:intergenic |
| GGGCATTGCTTTCCATGTTC+TGG | 0.245787 | 5.3:+16461644 | None:intergenic |
| CGATGCTCTGGCAGCTCGCC+TGG | 0.275887 | 5.3:-16463247 | MS.gene028112:CDS |
| CCAAAGCGTCTTGTTCCTCT+TGG | 0.348352 | 5.3:+16463068 | None:intergenic |
| AGATGAGGGAGAGAGGGTAT+AGG | 0.349714 | 5.3:-16463029 | MS.gene028112:CDS |
| CGAGAAGCAATACACGTAAA+AGG | 0.365476 | 5.3:-16461430 | MS.gene028112:CDS |
| GGAGAGATTAATGATTGAAC+AGG | 0.371512 | 5.3:-16461213 | MS.gene028112:CDS |
| CAAGAGGAACAAGACGCTTT+GGG | 0.378761 | 5.3:-16463067 | MS.gene028112:CDS |
| GAGACTGAGGGAGGAGAATA+GGG | 0.379742 | 5.3:-16461165 | MS.gene028112:CDS |
| GGAGACTGAGGGAGGAGAAT+AGG | 0.381910 | 5.3:-16461166 | MS.gene028112:CDS |
| CCAAGAGGAACAAGACGCTT+TGG | 0.398905 | 5.3:-16463068 | MS.gene028112:CDS |
| GAATCTTGTTAATCGCTATA+AGG | 0.403188 | 5.3:-16462974 | MS.gene028112:intron |
| TTGCATGCTATGTGCTCTTT+CGG | 0.404296 | 5.3:+16461592 | None:intergenic |
| CCGAAAATGTACGGCGGCGG+TGG | 0.422205 | 5.3:-16463276 | None:intergenic |
| ACTTGCATTTACACTGTTCA+GGG | 0.425547 | 5.3:+16463001 | None:intergenic |
| CAAGAGAGTTCATAGCGATA+AGG | 0.454890 | 5.3:-16463119 | MS.gene028112:CDS |
| GAACAAGACGCTTTGGGAAG+TGG | 0.456312 | 5.3:-16463061 | MS.gene028112:CDS |
| AAGAGAGTTCATAGCGATAA+GGG | 0.460403 | 5.3:-16463118 | MS.gene028112:CDS |
| AGTTCGAAGATGAGGGAGAG+AGG | 0.463651 | 5.3:-16463036 | MS.gene028112:CDS |
| TCAGCCGCAGTGGAGTCAAC+AGG | 0.465174 | 5.3:-16463145 | MS.gene028112:CDS |
| CATAGCGATAAGGGCGGAGC+TGG | 0.469611 | 5.3:-16463109 | MS.gene028112:CDS |
| ACAGGAATGGCGGCAGTCAA+TGG | 0.476521 | 5.3:-16461249 | MS.gene028112:CDS |
| GACGCTTTAAATGAGTCAAC+TGG | 0.478819 | 5.3:-16461131 | MS.gene028112:CDS |
| AAAATGTACGGCGGCGGTGG+AGG | 0.483528 | 5.3:-16463273 | MS.gene028112:CDS |
| AGGAGAATAGGGCAGAGAGA+AGG | 0.485185 | 5.3:-16461154 | MS.gene028112:CDS |
| GGAGAATAGGGCAGAGAGAA+GGG | 0.485668 | 5.3:-16461153 | MS.gene028112:CDS |
| AGTGGTGAGTTCGAAGATGA+GGG | 0.492563 | 5.3:-16463043 | MS.gene028112:CDS |
| GATGCAGTGGAGGGAGGTGA+TGG | 0.493197 | 5.3:-16461303 | MS.gene028112:CDS |
| TGAGGGAGAGAGGGTATAGG+AGG | 0.495279 | 5.3:-16463026 | MS.gene028112:CDS |
| TTTAAATGAGTCAACTGGCT+TGG | 0.495661 | 5.3:-16461126 | MS.gene028112:CDS |
| GATGCTCTGGCAGCTCGCCT+GGG | 0.496371 | 5.3:-16463246 | MS.gene028112:CDS |
| AAGTGGTGAGTTCGAAGATG+AGG | 0.496550 | 5.3:-16463044 | MS.gene028112:CDS |
| TTGCAACAGAGAAGTCTTCA+AGG | 0.502672 | 5.3:-16461394 | MS.gene028112:CDS |
| CTCTCCTCTCTCACCGCCGC+AGG | 0.504269 | 5.3:+16463177 | None:intergenic |
| CGGTGGAGGAGACGATGCTC+TGG | 0.506430 | 5.3:-16463259 | MS.gene028112:CDS |
| TGACTCCACTGCGGCTGAGC+TGG | 0.508087 | 5.3:+16463150 | None:intergenic |
| AACAGTTGTTTGAACAGGAA+TGG | 0.513571 | 5.3:-16461262 | MS.gene028112:CDS |
| GTCTCCTGCGGCGGTGAGAG+AGG | 0.514521 | 5.3:-16463181 | MS.gene028112:CDS |
| GATTAATGATTGAACAGGAA+TGG | 0.519107 | 5.3:-16461208 | MS.gene028112:CDS |
| GAGGGAGGTGATGGAAAGGC+GGG | 0.529349 | 5.3:-16461294 | MS.gene028112:CDS |
| GGAGTGAAGAAAATAAGAAG+TGG | 0.531731 | 5.3:-16461524 | MS.gene028112:CDS |
| GGAGGGAAAGAGAAGAGCAT+AGG | 0.544277 | 5.3:-16461187 | MS.gene028112:CDS |
| TAATGATTGAACAGGAATGG+AGG | 0.545461 | 5.3:-16461205 | MS.gene028112:CDS |
| CGATAAGGGCGGAGCTGGAG+AGG | 0.548497 | 5.3:-16463104 | MS.gene028112:CDS |
| TTACGTGTATTGCTTCTCGC+AGG | 0.548915 | 5.3:+16461434 | None:intergenic |
| AATACACGTAAAAGGAAAGC+TGG | 0.551659 | 5.3:-16461422 | MS.gene028112:CDS |
| GTGACGGTGGTACTATTCCC+AGG | 0.553707 | 5.3:+16463229 | None:intergenic |
| GGGTACCAGCTCAGCCGCAG+TGG | 0.554507 | 5.3:-16463155 | MS.gene028112:CDS |
| GATAAGGGCGGAGCTGGAGA+GGG | 0.555293 | 5.3:-16463103 | MS.gene028112:CDS |
| GTTCGAAGATGAGGGAGAGA+GGG | 0.555989 | 5.3:-16463035 | MS.gene028112:CDS |
| AATGGAGATGCAGTGGAGGG+AGG | 0.556920 | 5.3:-16461309 | MS.gene028112:CDS |
| GGAGGGAGGTGATGGAAAGG+CGG | 0.558316 | 5.3:-16461295 | MS.gene028112:CDS |
| GGAGACATCAACGACGATGT+CGG | 0.566477 | 5.3:+16463198 | None:intergenic |
| AATGATTGAACAGGAATGGA+GGG | 0.570661 | 5.3:-16461204 | MS.gene028112:CDS |
| CTGAACAGTGTAAATGCAAG+TGG | 0.574316 | 5.3:-16462999 | MS.gene028112:CDS |
| AGTTGAAGATGACAGTGAAG+AGG | 0.575058 | 5.3:-16461462 | MS.gene028112:CDS |
| CTGAGAATTCGTCAGAGGAT+CGG | 0.577596 | 5.3:+16461498 | None:intergenic |
| CGAATTCTCAGAAGATGATG+AGG | 0.577887 | 5.3:-16461486 | MS.gene028112:CDS |
| TGCGGCGGTGAGAGAGGAGA+GGG | 0.582596 | 5.3:-16463175 | MS.gene028112:CDS |
| GAGACATCTGATCCAGAACA+TGG | 0.596082 | 5.3:-16461656 | MS.gene028112:CDS |
| GAGAAGAGCATAGGAGACTG+AGG | 0.597643 | 5.3:-16461178 | MS.gene028112:CDS |
| TGACAGAAACCGAAAATGTA+CGG | 0.599687 | 5.3:-16463285 | None:intergenic |
| AGTCAATGGAAAAGCTTGAG+AGG | 0.603425 | 5.3:-16461235 | MS.gene028112:CDS |
| GTCGTTGATGTCTCCTGCGG+CGG | 0.605338 | 5.3:-16463190 | MS.gene028112:CDS |
| AGTGGAGGGAGGTGATGGAA+AGG | 0.613399 | 5.3:-16461298 | MS.gene028112:CDS |
| GTCAATGGAAAAGCTTGAGA+GGG | 0.615909 | 5.3:-16461234 | MS.gene028112:CDS |
| TGCAACAGAGAAGTCTTCAA+GGG | 0.632169 | 5.3:-16461393 | MS.gene028112:CDS |
| CTGCGGCGGTGAGAGAGGAG+AGG | 0.633062 | 5.3:-16463176 | MS.gene028112:CDS |
| TAATATTCAAGAAATGCTCA+AGG | 0.634081 | 5.3:-16461354 | MS.gene028112:CDS |
| AGAAGAGCATAGGAGACTGA+GGG | 0.643488 | 5.3:-16461177 | MS.gene028112:CDS |
| ATCTTCTGAGAATTCGTCAG+AGG | 0.649927 | 5.3:+16461493 | None:intergenic |
| AGAGCATAGGAGACTGAGGG+AGG | 0.658874 | 5.3:-16461174 | MS.gene028112:CDS |
| GGGATTTCACTGCTTCCAAG+AGG | 0.659081 | 5.3:-16463083 | MS.gene028112:CDS |
| GATGTCGGAATCAGAAGTGA+CGG | 0.663943 | 5.3:+16463213 | None:intergenic |
| ATCGTCGTTGATGTCTCCTG+CGG | 0.674009 | 5.3:-16463193 | MS.gene028112:CDS |
| AGTTGTTTGAACAGGAATGG+CGG | 0.675425 | 5.3:-16461259 | MS.gene028112:CDS |
| AAACCGAAAATGTACGGCGG+CGG | 0.675954 | 5.3:-16463279 | None:intergenic |
| AGAGTTCATAGCGATAAGGG+CGG | 0.691633 | 5.3:-16463115 | MS.gene028112:CDS |
| GTCGGAATCAGAAGTGACGG+TGG | 0.718058 | 5.3:+16463216 | None:intergenic |
| CAGAAACCGAAAATGTACGG+CGG | 0.798682 | 5.3:-16463282 | None:intergenic |
| GTCTCCTGTTGACTCCACTG+CGG | 0.804513 | 5.3:+16463141 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAATATATGATTTTAAGTT+TGG | - | chr5.3:16463253-16463272 | MS.gene028112:CDS | 10.0% |
| !! | CAAAAAATGATATAATTGTA+AGG | + | chr5.3:16461703-16461722 | None:intergenic | 15.0% |
| !!! | TTTGTAAGTTTTTTTTTGTT+TGG | + | chr5.3:16461863-16461882 | None:intergenic | 15.0% |
| !! | AAAAGCTATATCTTGAATAT+TGG | - | chr5.3:16462589-16462608 | MS.gene028112:intron | 20.0% |
| !! | AAAGCTATATCTTGAATATT+GGG | - | chr5.3:16462590-16462609 | MS.gene028112:intron | 20.0% |
| !! | AATTCAAAAACTAATGCTTT+CGG | + | chr5.3:16461888-16461907 | None:intergenic | 20.0% |
| !! | ATGGTAATAAAAACAAATGT+TGG | + | chr5.3:16461916-16461935 | None:intergenic | 20.0% |
| !! | TGCATTGTTATAATTTCATT+TGG | - | chr5.3:16461605-16461624 | MS.gene028112:CDS | 20.0% |
| !!! | AAACAATTTTTGAATTTGCA+GGG | - | chr5.3:16461830-16461849 | MS.gene028112:intron | 20.0% |
| !!! | CATTTGTTTTTATTACCATT+TGG | - | chr5.3:16461917-16461936 | MS.gene028112:intron | 20.0% |
| !!! | TATCTTTCTCTTTATGTTTT+GGG | - | chr5.3:16461371-16461390 | MS.gene028112:CDS | 20.0% |
| ! | AAGCTATATCTTGAATATTG+GGG | - | chr5.3:16462591-16462610 | MS.gene028112:intron | 25.0% |
| ! | AATTCAAAAACTTAGTCTCT+TGG | - | chr5.3:16461766-16461785 | MS.gene028112:intron | 25.0% |
| ! | AGTAAATTTAATCATGTCGT+TGG | - | chr5.3:16462508-16462527 | MS.gene028112:intron | 25.0% |
| ! | ATATATGAAATGCTGTGATT+TGG | - | chr5.3:16461985-16462004 | MS.gene028112:intron | 25.0% |
| ! | CATGCAATTCTTCAAAAAAT+GGG | + | chr5.3:16462701-16462720 | None:intergenic | 25.0% |
| ! | GTAAATTTAATCATGTCGTT+GGG | - | chr5.3:16462509-16462528 | MS.gene028112:intron | 25.0% |
| ! | TAATATTCAAGAAATGCTCA+AGG | - | chr5.3:16462968-16462987 | MS.gene028112:intron | 25.0% |
| ! | TGAGGACTAAAAAGTTATAT+TGG | + | chr5.3:16462276-16462295 | None:intergenic | 25.0% |
| ! | TTTCCAACACCAATTAAAAA+TGG | - | chr5.3:16462995-16463014 | MS.gene028112:CDS | 25.0% |
| !! | ACTAAGTTTTTGAATTTGCA+GGG | + | chr5.3:16461762-16461781 | None:intergenic | 25.0% |
| !! | GAAACAATTTTTGAATTTGC+AGG | - | chr5.3:16461829-16461848 | MS.gene028112:intron | 25.0% |
| !! | GTATCTTTCTCTTTATGTTT+TGG | - | chr5.3:16461370-16461389 | MS.gene028112:CDS | 25.0% |
| !!! | AACATGTATGATTTGGTATT+TGG | - | chr5.3:16462477-16462496 | MS.gene028112:intron | 25.0% |
| !!! | ATATAACTTTTTAGTCCTCA+AGG | - | chr5.3:16462276-16462295 | MS.gene028112:intron | 25.0% |
| !!! | CTTTATGTTTTGGGTTTTTA+GGG | - | chr5.3:16461380-16461399 | MS.gene028112:CDS | 25.0% |
| !!! | TCTTTATGTTTTGGGTTTTT+AGG | - | chr5.3:16461379-16461398 | MS.gene028112:CDS | 25.0% |
| AACATTGAAGGAGTTTGAAA+AGG | - | chr5.3:16462322-16462341 | MS.gene028112:intron | 30.0% | |
| AACCTCTAACATGTATGATT+TGG | - | chr5.3:16462470-16462489 | MS.gene028112:intron | 30.0% | |
| AATTAAAAATGGAGATGCAG+TGG | - | chr5.3:16463006-16463025 | MS.gene028112:CDS | 30.0% | |
| ATAAGTATGGACCATAATGT+TGG | - | chr5.3:16461951-16461970 | MS.gene028112:intron | 30.0% | |
| GAAATATGCATTTGTAGTGT+TGG | - | chr5.3:16461438-16461457 | MS.gene028112:CDS | 30.0% | |
| GAATCTTGTTAATCGCTATA+AGG | - | chr5.3:16461348-16461367 | MS.gene028112:CDS | 30.0% | |
| GATTAATGATTGAACAGGAA+TGG | - | chr5.3:16463114-16463133 | MS.gene028112:CDS | 30.0% | |
| GCATGCAATTCTTCAAAAAA+TGG | + | chr5.3:16462702-16462721 | None:intergenic | 30.0% | |
| TAAGTATGGACCATAATGTT+GGG | - | chr5.3:16461952-16461971 | MS.gene028112:intron | 30.0% | |
| TACCAAATCATACATGTTAG+AGG | + | chr5.3:16462475-16462494 | None:intergenic | 30.0% | |
| TGAAAAACAGTTGTTTGAAC+AGG | - | chr5.3:16463055-16463074 | MS.gene028112:CDS | 30.0% | |
| TTATTTATCCACAGTCCAAA+TGG | + | chr5.3:16461935-16461954 | None:intergenic | 30.0% | |
| ! | GACTAAGTTTTTGAATTTGC+AGG | + | chr5.3:16461763-16461782 | None:intergenic | 30.0% |
| ! | TTTTATTACCATTTGGACTG+TGG | - | chr5.3:16461924-16461943 | MS.gene028112:intron | 30.0% |
| !! | ACTGCATCTCCATTTTTAAT+TGG | + | chr5.3:16463007-16463026 | None:intergenic | 30.0% |
| !! | TCTCCATTTTTAATTGGTGT+TGG | + | chr5.3:16463001-16463020 | None:intergenic | 30.0% |
| AAAGAAAACTGATGCACAGT+TGG | + | chr5.3:16462552-16462571 | None:intergenic | 35.0% | |
| AAATGAGTTGCAGAAAGACA+TGG | - | chr5.3:16461463-16461482 | MS.gene028112:CDS | 35.0% | |
| AACAGTTGTTTGAACAGGAA+TGG | - | chr5.3:16463060-16463079 | MS.gene028112:CDS | 35.0% | |
| AAGAGAGTTCATAGCGATAA+GGG | - | chr5.3:16461204-16461223 | MS.gene028112:CDS | 35.0% | |
| AATACACGTAAAAGGAAAGC+TGG | - | chr5.3:16462900-16462919 | MS.gene028112:intron | 35.0% | |
| AATGATTGAACAGGAATGGA+GGG | - | chr5.3:16463118-16463137 | MS.gene028112:CDS | 35.0% | |
| ACTTGCATTTACACTGTTCA+GGG | + | chr5.3:16461324-16461343 | None:intergenic | 35.0% | |
| ATAATGAGGTCCAGTTCAAA+TGG | + | chr5.3:16462042-16462061 | None:intergenic | 35.0% | |
| ATGAACTCAACCCAACATTA+TGG | + | chr5.3:16461965-16461984 | None:intergenic | 35.0% | |
| ATTGAAGGAGTTTGAAAAGG+AGG | - | chr5.3:16462325-16462344 | MS.gene028112:intron | 35.0% | |
| CGTTCAGCTCAAACAAAAAA+AGG | - | chr5.3:16462777-16462796 | MS.gene028112:intron | 35.0% | |
| GGACTGTGGATAAATAAGTA+TGG | - | chr5.3:16461938-16461957 | MS.gene028112:intron | 35.0% | |
| GGAGAGATTAATGATTGAAC+AGG | - | chr5.3:16463109-16463128 | MS.gene028112:CDS | 35.0% | |
| GGAGTGAAGAAAATAAGAAG+TGG | - | chr5.3:16462798-16462817 | MS.gene028112:intron | 35.0% | |
| TAATGATTGAACAGGAATGG+AGG | - | chr5.3:16463117-16463136 | MS.gene028112:CDS | 35.0% | |
| TCAAATGCTAACTTGAGCTT+CGG | - | chr5.3:16462217-16462236 | MS.gene028112:intron | 35.0% | |
| TTTAAATGAGTCAACTGGCT+TGG | - | chr5.3:16463196-16463215 | MS.gene028112:CDS | 35.0% | |
| ! | AGGTTTTCTGCATATGCAAA+GGG | + | chr5.3:16462455-16462474 | None:intergenic | 35.0% |
| ! | CACATGATGATGTTTATGCA+GGG | - | chr5.3:16462639-16462658 | MS.gene028112:intron | 35.0% |
| ! | TCACATGATGATGTTTATGC+AGG | - | chr5.3:16462638-16462657 | MS.gene028112:intron | 35.0% |
| !! | ATGAAATGCTGTGATTTGGT+TGG | - | chr5.3:16461989-16462008 | MS.gene028112:intron | 35.0% |
| AAAAATGGAGATGCAGTGGA+GGG | - | chr5.3:16463010-16463029 | MS.gene028112:CDS | 40.0% | |
| ACCAATTGAACTACACCTTG+AGG | + | chr5.3:16462294-16462313 | None:intergenic | 40.0% | |
| AGGTTTCTTGATGGGAAAGT+TGG | + | chr5.3:16462132-16462151 | None:intergenic | 40.0% | |
| AGTCAATGGAAAAGCTTGAG+AGG | - | chr5.3:16463087-16463106 | MS.gene028112:CDS | 40.0% | |
| AGTCCTTAACGTCAGCTTAT+TGG | + | chr5.3:16461805-16461824 | None:intergenic | 40.0% | |
| AGTTGAAGATGACAGTGAAG+AGG | - | chr5.3:16462860-16462879 | MS.gene028112:intron | 40.0% | |
| AGTTGTTTGAACAGGAATGG+CGG | - | chr5.3:16463063-16463082 | MS.gene028112:CDS | 40.0% | |
| CAAGAGAGTTCATAGCGATA+AGG | - | chr5.3:16461203-16461222 | MS.gene028112:CDS | 40.0% | |
| CACTTGCATTTACACTGTTC+AGG | + | chr5.3:16461325-16461344 | None:intergenic | 40.0% | |
| CGAATTCTCAGAAGATGATG+AGG | - | chr5.3:16462836-16462855 | MS.gene028112:intron | 40.0% | |
| CGAGAAGCAATACACGTAAA+AGG | - | chr5.3:16462892-16462911 | MS.gene028112:intron | 40.0% | |
| CTGAACAGTGTAAATGCAAG+TGG | - | chr5.3:16461323-16461342 | MS.gene028112:CDS | 40.0% | |
| CTTCTGAATCGCTCTAGTTA+GGG | + | chr5.3:16462076-16462095 | None:intergenic | 40.0% | |
| GCTTGACAAGGTTTCTTGAT+GGG | + | chr5.3:16462140-16462159 | None:intergenic | 40.0% | |
| GTCAATGGAAAAGCTTGAGA+GGG | - | chr5.3:16463088-16463107 | MS.gene028112:CDS | 40.0% | |
| GTCCTTAACGTCAGCTTATT+GGG | + | chr5.3:16461804-16461823 | None:intergenic | 40.0% | |
| TAAAAATGGAGATGCAGTGG+AGG | - | chr5.3:16463009-16463028 | MS.gene028112:CDS | 40.0% | |
| TCCTCAAGGTGTAGTTCAAT+TGG | - | chr5.3:16462290-16462309 | MS.gene028112:intron | 40.0% | |
| TGCAACAGAGAAGTCTTCAA+GGG | - | chr5.3:16462929-16462948 | MS.gene028112:intron | 40.0% | |
| TGGTTGAGCTGAAACATTGA+AGG | - | chr5.3:16462310-16462329 | MS.gene028112:intron | 40.0% | |
| TTCTGAATCGCTCTAGTTAG+GGG | + | chr5.3:16462075-16462094 | None:intergenic | 40.0% | |
| TTGCAACAGAGAAGTCTTCA+AGG | - | chr5.3:16462928-16462947 | MS.gene028112:intron | 40.0% | |
| TTGCATGCTATGTGCTCTTT+CGG | + | chr5.3:16462733-16462752 | None:intergenic | 40.0% | |
| ! | ATCTTCTGAGAATTCGTCAG+AGG | + | chr5.3:16462832-16462851 | None:intergenic | 40.0% |
| ! | GACGCTTTAAATGAGTCAAC+TGG | - | chr5.3:16463191-16463210 | MS.gene028112:CDS | 40.0% |
| ! | GAGGTTTTCTGCATATGCAA+AGG | + | chr5.3:16462456-16462475 | None:intergenic | 40.0% |
| ! | GGTTTTCTGCATATGCAAAG+GGG | + | chr5.3:16462454-16462473 | None:intergenic | 40.0% |
| ! | TCTTGATGGGAAAGTTGGTT+GGG | + | chr5.3:16462127-16462146 | None:intergenic | 40.0% |
| ! | TTCTTGATGGGAAAGTTGGT+TGG | + | chr5.3:16462128-16462147 | None:intergenic | 40.0% |
| !! | AAATGCTGTGATTTGGTTGG+AGG | - | chr5.3:16461992-16462011 | MS.gene028112:intron | 40.0% |
| !! | AATGCTGTGATTTGGTTGGA+GGG | - | chr5.3:16461993-16462012 | MS.gene028112:intron | 40.0% |
| !! | TAGTCTCTTGGTGTCATACA+TGG | - | chr5.3:16461778-16461797 | MS.gene028112:intron | 40.0% |
| AAGAGTGATCTCGCTTGACA+AGG | + | chr5.3:16462152-16462171 | None:intergenic | 45.0% | |
| AAGTGGTGAGTTCGAAGATG+AGG | - | chr5.3:16461278-16461297 | MS.gene028112:CDS | 45.0% | |
| AGAGTTCATAGCGATAAGGG+CGG | - | chr5.3:16461207-16461226 | MS.gene028112:CDS | 45.0% | |
| AGTGGTGAGTTCGAAGATGA+GGG | - | chr5.3:16461279-16461298 | MS.gene028112:CDS | 45.0% | |
| CAAGAGGAACAAGACGCTTT+GGG | - | chr5.3:16461255-16461274 | MS.gene028112:CDS | 45.0% | |
| CACATAATGGTGCAGTGATG+TGG | + | chr5.3:16462103-16462122 | None:intergenic | 45.0% | |
| CGCTTGACAAGGTTTCTTGA+TGG | + | chr5.3:16462141-16462160 | None:intergenic | 45.0% | |
| CTGAGAATTCGTCAGAGGAT+CGG | + | chr5.3:16462827-16462846 | None:intergenic | 45.0% | |
| GAGACATCTGATCCAGAACA+TGG | - | chr5.3:16462666-16462685 | MS.gene028112:intron | 45.0% | |
| GAGGTCAATATGCACTAGTG+AGG | + | chr5.3:16462432-16462451 | None:intergenic | 45.0% | |
| GATGTCGGAATCAGAAGTGA+CGG | + | chr5.3:16461112-16461131 | None:intergenic | 45.0% | |
| GCTTCTGAATCGCTCTAGTT+AGG | + | chr5.3:16462077-16462096 | None:intergenic | 45.0% | |
| GGAGTTTGAAAAGGAGGTCT+AGG | - | chr5.3:16462331-16462350 | MS.gene028112:intron | 45.0% | |
| TTACGTGTATTGCTTCTCGC+AGG | + | chr5.3:16462891-16462910 | None:intergenic | 45.0% | |
| TTTCTGCATATGCAAAGGGG+AGG | + | chr5.3:16462451-16462470 | None:intergenic | 45.0% | |
| ! | AAGTTGGTTGGGGCACATAA+TGG | + | chr5.3:16462116-16462135 | None:intergenic | 45.0% |
| ! | AGAAGAGCATAGGAGACTGA+GGG | - | chr5.3:16463145-16463164 | MS.gene028112:CDS | 45.0% |
| ! | CTTGATGGGAAAGTTGGTTG+GGG | + | chr5.3:16462126-16462145 | None:intergenic | 45.0% |
| ! | TGGAGGGTGTGTTATGGATT+GGG | - | chr5.3:16462009-16462028 | MS.gene028112:intron | 45.0% |
| ! | TTGGAGGGTGTGTTATGGAT+TGG | - | chr5.3:16462008-16462027 | MS.gene028112:intron | 45.0% |
| ! | TTTGGTTGGAGGGTGTGTTA+TGG | - | chr5.3:16462003-16462022 | MS.gene028112:intron | 45.0% |
| AACCACCCTACTTCCTTGGT+GGG | - | chr5.3:16461522-16461541 | MS.gene028112:CDS | 50.0% | |
| AGCTCCTTCAACCTGCCAAA+CGG | - | chr5.3:16462406-16462425 | MS.gene028112:intron | 50.0% | |
| AGGAGAATAGGGCAGAGAGA+AGG | - | chr5.3:16463168-16463187 | MS.gene028112:CDS | 50.0% | |
| AGTTCGAAGATGAGGGAGAG+AGG | - | chr5.3:16461286-16461305 | MS.gene028112:CDS | 50.0% | |
| ATCGTCGTTGATGTCTCCTG+CGG | - | chr5.3:16461129-16461148 | MS.gene028112:CDS | 50.0% | |
| ATGCAACCACCCTACTTCCT+TGG | - | chr5.3:16461518-16461537 | MS.gene028112:CDS | 50.0% | |
| CCAAGAGGAACAAGACGCTT+TGG | - | chr5.3:16461254-16461273 | MS.gene028112:CDS | 50.0% | |
| CTTGTCCCACCAAGGAAGTA+GGG | + | chr5.3:16461530-16461549 | None:intergenic | 50.0% | |
| GAATCGCTCTAGTTAGGGGT+GGG | + | chr5.3:16462071-16462090 | None:intergenic | 50.0% | |
| GAGACTGAGGGAGGAGAATA+GGG | - | chr5.3:16463157-16463176 | MS.gene028112:CDS | 50.0% | |
| GGAGAATAGGGCAGAGAGAA+GGG | - | chr5.3:16463169-16463188 | MS.gene028112:CDS | 50.0% | |
| GGAGACATCAACGACGATGT+CGG | + | chr5.3:16461127-16461146 | None:intergenic | 50.0% | |
| GGCCCAATAAGCTGACGTTA+AGG | - | chr5.3:16461799-16461818 | MS.gene028112:intron | 50.0% | |
| GGGATTTCACTGCTTCCAAG+AGG | - | chr5.3:16461239-16461258 | MS.gene028112:CDS | 50.0% | |
| GGGTCAGGATCCATTTGAAC+TGG | - | chr5.3:16462029-16462048 | MS.gene028112:intron | 50.0% | |
| GTTCGAAGATGAGGGAGAGA+GGG | - | chr5.3:16461287-16461306 | MS.gene028112:CDS | 50.0% | |
| TATGCACTAGTGAGGCCGTT+TGG | + | chr5.3:16462424-16462443 | None:intergenic | 50.0% | |
| TGAATCGCTCTAGTTAGGGG+TGG | + | chr5.3:16462072-16462091 | None:intergenic | 50.0% | |
| ! | AGATGAGGGAGAGAGGGTAT+AGG | - | chr5.3:16461293-16461312 | MS.gene028112:CDS | 50.0% |
| ! | CCAAAGCGTCTTGTTCCTCT+TGG | + | chr5.3:16461257-16461276 | None:intergenic | 50.0% |
| ! | GAGAAGAGCATAGGAGACTG+AGG | - | chr5.3:16463144-16463163 | MS.gene028112:CDS | 50.0% |
| ! | GGAGGGAAAGAGAAGAGCAT+AGG | - | chr5.3:16463135-16463154 | MS.gene028112:CDS | 50.0% |
| ! | GGGCATTGCTTTCCATGTTC+TGG | + | chr5.3:16462681-16462700 | None:intergenic | 50.0% |
| !! | GAACAAGACGCTTTGGGAAG+TGG | - | chr5.3:16461261-16461280 | MS.gene028112:CDS | 50.0% |
| !! | GGTGTGTTATGGATTGGGTC+AGG | - | chr5.3:16462014-16462033 | MS.gene028112:intron | 50.0% |
| AATGGAGATGCAGTGGAGGG+AGG | - | chr5.3:16463013-16463032 | MS.gene028112:CDS | 55.0% | |
| ACAGGAATGGCGGCAGTCAA+TGG | - | chr5.3:16463073-16463092 | MS.gene028112:CDS | 55.0% | |
| AGAGCATAGGAGACTGAGGG+AGG | - | chr5.3:16463148-16463167 | MS.gene028112:CDS | 55.0% | |
| CAACCACCCTACTTCCTTGG+TGG | - | chr5.3:16461521-16461540 | MS.gene028112:CDS | 55.0% | |
| CCTACTTCCTTGGTGGGACA+AGG | - | chr5.3:16461528-16461547 | MS.gene028112:CDS | 55.0% | |
| CCTTGTCCCACCAAGGAAGT+AGG | + | chr5.3:16461531-16461550 | None:intergenic | 55.0% | |
| GGAGACTGAGGGAGGAGAAT+AGG | - | chr5.3:16463156-16463175 | MS.gene028112:CDS | 55.0% | |
| GTCGGAATCAGAAGTGACGG+TGG | + | chr5.3:16461109-16461128 | None:intergenic | 55.0% | |
| GTGACGGTGGTACTATTCCC+AGG | + | chr5.3:16461096-16461115 | None:intergenic | 55.0% | |
| ! | AACGAAGCCTTGTCCCACCA+AGG | + | chr5.3:16461538-16461557 | None:intergenic | 55.0% |
| ! | GGGGTGGGCTTCACATAATG+AGG | + | chr5.3:16462056-16462075 | None:intergenic | 55.0% |
| ! | TGAGGGAGAGAGGGTATAGG+AGG | - | chr5.3:16461296-16461315 | MS.gene028112:CDS | 55.0% |
| !! | AGTGGAGGGAGGTGATGGAA+AGG | - | chr5.3:16463024-16463043 | MS.gene028112:CDS | 55.0% |
| !! | GTCTCCTGTTGACTCCACTG+CGG | + | chr5.3:16461184-16461203 | None:intergenic | 55.0% |
| CACTAGTGAGGCCGTTTGGC+AGG | + | chr5.3:16462420-16462439 | None:intergenic | 60.0% | |
| CATAGCGATAAGGGCGGAGC+TGG | - | chr5.3:16461213-16461232 | MS.gene028112:CDS | 60.0% | |
| GATAAGGGCGGAGCTGGAGA+GGG | - | chr5.3:16461219-16461238 | MS.gene028112:CDS | 60.0% | |
| GATGCAGTGGAGGGAGGTGA+TGG | - | chr5.3:16463019-16463038 | MS.gene028112:CDS | 60.0% | |
| GTCCCACCAAGGAAGTAGGG+TGG | + | chr5.3:16461527-16461546 | None:intergenic | 60.0% | |
| GTCGTTGATGTCTCCTGCGG+CGG | - | chr5.3:16461132-16461151 | MS.gene028112:CDS | 60.0% | |
| TCAGCCGCAGTGGAGTCAAC+AGG | - | chr5.3:16461177-16461196 | MS.gene028112:CDS | 60.0% | |
| ! | GAGGCCGTTTGGCAGGTTGA+AGG | + | chr5.3:16462413-16462432 | None:intergenic | 60.0% |
| !! | GAGGGAGGTGATGGAAAGGC+GGG | - | chr5.3:16463028-16463047 | MS.gene028112:CDS | 60.0% |
| !! | GGAGGGAGGTGATGGAAAGG+CGG | - | chr5.3:16463027-16463046 | MS.gene028112:CDS | 60.0% |
| CGATAAGGGCGGAGCTGGAG+AGG | - | chr5.3:16461218-16461237 | MS.gene028112:CDS | 65.0% | |
| CGGTGGAGGAGACGATGCTC+TGG | - | chr5.3:16461063-16461082 | MS.gene028112:CDS | 65.0% | |
| GATGCTCTGGCAGCTCGCCT+GGG | - | chr5.3:16461076-16461095 | MS.gene028112:CDS | 65.0% | |
| TGACTCCACTGCGGCTGAGC+TGG | + | chr5.3:16461175-16461194 | None:intergenic | 65.0% | |
| TGCGGCGGTGAGAGAGGAGA+GGG | - | chr5.3:16461147-16461166 | MS.gene028112:CDS | 65.0% | |
| CGATGCTCTGGCAGCTCGCC+TGG | - | chr5.3:16461075-16461094 | MS.gene028112:CDS | 70.0% | |
| CTCTCCTCTCTCACCGCCGC+AGG | + | chr5.3:16461148-16461167 | None:intergenic | 70.0% | |
| CTGCGGCGGTGAGAGAGGAG+AGG | - | chr5.3:16461146-16461165 | MS.gene028112:CDS | 70.0% | |
| GGGTACCAGCTCAGCCGCAG+TGG | - | chr5.3:16461167-16461186 | MS.gene028112:CDS | 70.0% | |
| GTCTCCTGCGGCGGTGAGAG+AGG | - | chr5.3:16461141-16461160 | MS.gene028112:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 16461052 | 16463292 | 16461052 | ID=MS.gene028112 |
| chr5.3 | mRNA | 16461052 | 16463292 | 16461052 | ID=MS.gene028112.t1;Parent=MS.gene028112 |
| chr5.3 | exon | 16462975 | 16463292 | 16462975 | ID=MS.gene028112.t1.exon1;Parent=MS.gene028112.t1 |
| chr5.3 | CDS | 16462975 | 16463292 | 16462975 | ID=cds.MS.gene028112.t1;Parent=MS.gene028112.t1 |
| chr5.3 | exon | 16461052 | 16461684 | 16461052 | ID=MS.gene028112.t1.exon2;Parent=MS.gene028112.t1 |
| chr5.3 | CDS | 16461052 | 16461684 | 16461052 | ID=cds.MS.gene028112.t1;Parent=MS.gene028112.t1 |
| Gene Sequence |
| Protein sequence |
