Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene028228.t1 | RHN42288.1 | 94.4 | 679 | 38 | 0 | 1 | 679 | 93 | 771 | 0.00E+00 | 1118.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene028228.t1 | Q9ZUM0 | 40.1 | 588 | 258 | 26 | 4 | 559 | 9 | 534 | 5.5e-79 | 297.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene028228.t1 | A0A396GPF7 | 94.4 | 679 | 38 | 0 | 1 | 679 | 93 | 771 | 0.0e+00 | 1118.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene028228.t1 | TF | C3H |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene028228.t1 | MTR_4g114040 | 57.851 | 121 | 34 | 1 | 25 | 145 | 7 | 110 | 1.27e-42 | 163 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene028228.t1 | AT2G02160 | 40.351 | 627 | 281 | 28 | 3 | 596 | 5 | 571 | 4.90e-106 | 337 |
Find 192 sgRNAs with CRISPR-Local
Find 275 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTTGGGCTGATCCCTTTCT+AGG | 0.199263 | 4.2:+16571103 | None:intergenic |
| AGAATTTCACTAAGTGGTTT+TGG | 0.245906 | 4.2:+16570512 | None:intergenic |
| TATCATGGGGAAGATGAATT+TGG | 0.267482 | 4.2:-16571289 | MS.gene028228:CDS |
| GCTTGTTTACTACCATTATA+AGG | 0.280011 | 4.2:+16571823 | None:intergenic |
| TTTCTCAGAGAGTCGTCTCC+TGG | 0.281678 | 4.2:-16571355 | MS.gene028228:CDS |
| AGTCTTGCTGAACTTAAGTA+TGG | 0.284200 | 4.2:-16570629 | MS.gene028228:CDS |
| TTCTCCCTTGACATGCAAAA+AGG | 0.299512 | 4.2:-16573189 | MS.gene028228:intron |
| TCCTCTTTCCAAATGATTGT+TGG | 0.310747 | 4.2:+16570585 | None:intergenic |
| TTGGAAAGAGGAAAAGCTTC+AGG | 0.319306 | 4.2:-16570574 | MS.gene028228:CDS |
| TTGACGGATCTCTCATTTGC+AGG | 0.321400 | 4.2:+16570917 | None:intergenic |
| CAGCCTCTTGACGGGTTGTT+AGG | 0.337201 | 4.2:-16571928 | MS.gene028228:CDS |
| CAACACCTGCAACATTTGCT+TGG | 0.342566 | 4.2:+16571602 | None:intergenic |
| GATGAGTCCTTCTTTCTAGT+TGG | 0.343319 | 4.2:+16571086 | None:intergenic |
| CCAAAAGGTTTCTTAAAACT+TGG | 0.344005 | 4.2:+16571661 | None:intergenic |
| AAGAACAACACCAATCTTCT+TGG | 0.345542 | 4.2:+16570151 | None:intergenic |
| ACCCATGCACCGCCTTATAA+TGG | 0.352929 | 4.2:-16571835 | MS.gene028228:CDS |
| GGAAGAAGAGTCCAAGATTC+AGG | 0.353435 | 4.2:-16570381 | MS.gene028228:CDS |
| CCGGCAACTGCTGCTGCTGC+TGG | 0.354940 | 4.2:-16571898 | MS.gene028228:CDS |
| GCCGTTTCCCTTCCTGCGCT+TGG | 0.358186 | 4.2:+16571009 | None:intergenic |
| ATCAGTGGCCGGTTGTCATC+TGG | 0.358804 | 4.2:-16570776 | MS.gene028228:CDS |
| TCGTATTCATTCAAAGAGTC+TGG | 0.359110 | 4.2:+16571238 | None:intergenic |
| AGAAATTCTGATTACTATCA+TGG | 0.361394 | 4.2:-16571304 | MS.gene028228:CDS |
| ATCTCTCATTTGCAGGCAAC+TGG | 0.384962 | 4.2:+16570924 | None:intergenic |
| TTACTGCCATTGGTAGGGTT+TGG | 0.386685 | 4.2:+16571733 | None:intergenic |
| AATAATGACCAACAATCATT+TGG | 0.389220 | 4.2:-16570593 | MS.gene028228:CDS |
| ATGAGTCCTTCTTTCTAGTT+GGG | 0.389725 | 4.2:+16571087 | None:intergenic |
| CGTCATTGTCCTTACCACTA+TGG | 0.395917 | 4.2:+16571380 | None:intergenic |
| ATCCTAGAGATTGTTGGTAT+TGG | 0.401206 | 4.2:-16572126 | MS.gene028228:CDS |
| TTTCTAGGTTCCCAGCCATA+TGG | 0.401770 | 4.2:+16571118 | None:intergenic |
| ATCATATGAGTCATAACCTT+GGG | 0.402504 | 4.2:+16571153 | None:intergenic |
| TCCATCAGCAGCCTGAATCT+TGG | 0.402576 | 4.2:+16570370 | None:intergenic |
| CTATGGAAATTGTGATCATC+TGG | 0.404436 | 4.2:+16571397 | None:intergenic |
| AAGTTTCTCCTCTCGTCATC+TGG | 0.405913 | 4.2:+16570698 | None:intergenic |
| CGATGAAGCTGCCGAAGATC+AGG | 0.408429 | 4.2:-16570294 | MS.gene028228:CDS |
| AAATCAAGAGCAAGAATATA+TGG | 0.412298 | 4.2:-16570198 | MS.gene028228:CDS |
| GACTTAGACAGAGGAAGAAC+CGG | 0.414257 | 4.2:-16570833 | MS.gene028228:CDS |
| GTACATCATCTTCATATTGT+TGG | 0.423888 | 4.2:+16570546 | None:intergenic |
| AGGATCCAGGATAGATTAAG+AGG | 0.436261 | 4.2:-16570728 | MS.gene028228:CDS |
| ACTTCCCAAGCAAATGTTGC+AGG | 0.436467 | 4.2:-16571607 | MS.gene028228:CDS |
| ACCTTCATACTCCTGATCTT+CGG | 0.437886 | 4.2:+16570283 | None:intergenic |
| GAAGATGATGTACCATTTGA+AGG | 0.438650 | 4.2:-16570536 | MS.gene028228:CDS |
| GAATCTGAAGTTGTGGCTGT+TGG | 0.444668 | 4.2:+16573285 | None:intergenic |
| ACCTTCCTCTTAATCTATCC+TGG | 0.445108 | 4.2:+16570723 | None:intergenic |
| AACACCTGCAACATTTGCTT+GGG | 0.445165 | 4.2:+16571603 | None:intergenic |
| TCCTTCAGAATTTCACTAAG+TGG | 0.448374 | 4.2:+16570506 | None:intergenic |
| AGGTGACTGTCACCACCATT+TGG | 0.450256 | 4.2:+16570863 | None:intergenic |
| GAAATTCTGATTACTATCAT+GGG | 0.451701 | 4.2:-16571303 | MS.gene028228:CDS |
| ACACGATTAGACCGGGCATT+AGG | 0.453044 | 4.2:+16571436 | None:intergenic |
| GATTGTTGGTATTGGTTGAA+TGG | 0.456384 | 4.2:-16572118 | MS.gene028228:CDS |
| ATCTGTGGCGTGGGGACAGA+TGG | 0.457178 | 4.2:+16571874 | None:intergenic |
| ATATGGCTGGGAACCTAGAA+AGG | 0.461958 | 4.2:-16571116 | MS.gene028228:CDS |
| CGGATGACGGAATGAACACT+TGG | 0.466296 | 4.2:+16572081 | None:intergenic |
| CTCAAGATGAAGCCTTGAAA+AGG | 0.468804 | 4.2:-16573238 | MS.gene028228:CDS |
| AATATATGGAAGATGAAGAT+GGG | 0.468862 | 4.2:-16570184 | MS.gene028228:CDS |
| AACTTGGATTCTCAGCTCCT+TGG | 0.469416 | 4.2:+16571677 | None:intergenic |
| AATCTGAAGTTGTGGCTGTT+GGG | 0.469633 | 4.2:+16573286 | None:intergenic |
| TGACTCTAGCATACTCACTA+TGG | 0.470886 | 4.2:+16572149 | None:intergenic |
| TCTGAGACCTCAACACTGTC+AGG | 0.480290 | 4.2:+16571049 | None:intergenic |
| GCATTAGGCCCATTGGTTGG+CGG | 0.480720 | 4.2:+16571451 | None:intergenic |
| AGAATAAATCTTCCACCAAA+TGG | 0.481461 | 4.2:-16570878 | MS.gene028228:CDS |
| AATGAAGGAATTACCGAAAA+CGG | 0.483376 | 4.2:-16570422 | MS.gene028228:CDS |
| CATGTACCGCCACCACCTGC+AGG | 0.483658 | 4.2:-16571517 | MS.gene028228:CDS |
| GATGACTTTGCCAAGAAGAT+TGG | 0.484215 | 4.2:-16570161 | MS.gene028228:CDS |
| GCCTCATGAGGGAAGGATCC+AGG | 0.484648 | 4.2:-16570741 | MS.gene028228:CDS |
| TACCATTATAAGGCGGTGCA+TGG | 0.485504 | 4.2:+16571833 | None:intergenic |
| CAACCAATGGGCCTAATGCC+CGG | 0.485721 | 4.2:-16571447 | MS.gene028228:CDS |
| TTAGGCCCATTGGTTGGCGG+TGG | 0.486496 | 4.2:+16571454 | None:intergenic |
| TTCTCAGAGAGTCGTCTCCT+GGG | 0.488365 | 4.2:-16571354 | MS.gene028228:CDS |
| GAAATTCTGAAGGAGAAGAA+AGG | 0.491627 | 4.2:-16570497 | MS.gene028228:CDS |
| TCCAAGCGCAGGAAGGGAAA+CGG | 0.492405 | 4.2:-16571010 | MS.gene028228:CDS |
| GAATATATGGAAGATGAAGA+TGG | 0.492589 | 4.2:-16570185 | MS.gene028228:CDS |
| GCCTCGGAAACGATTATTGA+CGG | 0.493252 | 4.2:+16570901 | None:intergenic |
| CAAGTGTTCATTCCGTCATC+CGG | 0.493411 | 4.2:-16572080 | MS.gene028228:intron |
| TTTACATGCAGCCTCTTGAC+GGG | 0.494749 | 4.2:-16571936 | MS.gene028228:intron |
| GTCATCATGTTTGCTACTGT+GGG | 0.496484 | 4.2:+16570451 | None:intergenic |
| TGGATTCTCAGCTCCTTGGT+TGG | 0.496891 | 4.2:+16571681 | None:intergenic |
| TGGTAGGGTTTGGTCCATGC+AGG | 0.497954 | 4.2:+16571743 | None:intergenic |
| TCCAAGATTCAGGCTGCTGA+TGG | 0.498699 | 4.2:-16570371 | MS.gene028228:CDS |
| GAAGCCTTCCAGATGACAAC+CGG | 0.499100 | 4.2:+16570768 | None:intergenic |
| AAGGCTTCATCTTGAGGAGA+AGG | 0.502963 | 4.2:+16573245 | None:intergenic |
| TTATCTAACCCTGCAGGTGG+TGG | 0.503622 | 4.2:+16571508 | None:intergenic |
| TCATCTTGAGGAGAAGGTGT+TGG | 0.504643 | 4.2:+16573251 | None:intergenic |
| TGGAAAGAGGAAAAGCTTCA+GGG | 0.504669 | 4.2:-16570573 | MS.gene028228:CDS |
| CTGAAGGAGAAGAAAGGAGT+TGG | 0.505461 | 4.2:-16570491 | MS.gene028228:CDS |
| GTATGAGTATGAACAAGTTG+AGG | 0.507239 | 4.2:-16570225 | MS.gene028228:CDS |
| AGTTCTCCACCGCCAACCAA+TGG | 0.509937 | 4.2:-16571460 | MS.gene028228:CDS |
| TCTTTGAATGAATACGATGT+AGG | 0.510886 | 4.2:-16571232 | MS.gene028228:CDS |
| AAAGGAGTTGGAGCTGGTGC+AGG | 0.510993 | 4.2:-16570479 | MS.gene028228:CDS |
| GTTCTCCACCGCCAACCAAT+GGG | 0.511996 | 4.2:-16571459 | MS.gene028228:CDS |
| CATGATGACAATAAGAATGA+AGG | 0.513449 | 4.2:-16570437 | MS.gene028228:CDS |
| AGACCGGGCATTAGGCCCAT+TGG | 0.518925 | 4.2:+16571444 | None:intergenic |
| ACCAACAATCATTTGGAAAG+AGG | 0.519008 | 4.2:-16570586 | MS.gene028228:CDS |
| TGTCATCATGTTTGCTACTG+TGG | 0.520700 | 4.2:+16570450 | None:intergenic |
| TCTAACCCTGCAGGTGGTGG+CGG | 0.521071 | 4.2:+16571511 | None:intergenic |
| CTTTGAATGAATACGATGTA+GGG | 0.521877 | 4.2:-16571231 | MS.gene028228:CDS |
| CGGAACATTGTCAGAGAGCA+AGG | 0.523049 | 4.2:-16570402 | MS.gene028228:CDS |
| GATCACATGCAAGAGCCATA+TGG | 0.523697 | 4.2:-16571133 | MS.gene028228:CDS |
| GAGTCAATCCTAGAGATTGT+TGG | 0.524919 | 4.2:-16572132 | MS.gene028228:CDS |
| TATGAGTATGAACAAGTTGA+GGG | 0.525313 | 4.2:-16570224 | MS.gene028228:CDS |
| GTCCCTCTCTAGGTGACTGC+CGG | 0.526777 | 4.2:+16570814 | None:intergenic |
| GTTGCCGCAATCTGTGGCGT+GGG | 0.527866 | 4.2:+16571865 | None:intergenic |
| ACATGCAAGAGCCATATGGC+TGG | 0.534478 | 4.2:-16571129 | MS.gene028228:CDS |
| GCAGCAGCAGCAGTTGCCGG+TGG | 0.534503 | 4.2:+16571901 | None:intergenic |
| GCCTCATTATCTAACCCTGC+AGG | 0.535034 | 4.2:+16571502 | None:intergenic |
| GTGGAAGATTTATTCTGCCT+CGG | 0.535587 | 4.2:+16570885 | None:intergenic |
| ACCTGCAGGGTTAGATAATG+AGG | 0.535845 | 4.2:-16571503 | MS.gene028228:CDS |
| GAGAAGAAAGGAGTTGGAGC+TGG | 0.544404 | 4.2:-16570485 | MS.gene028228:CDS |
| CTCTGTCCAAGTCCCTCTCT+AGG | 0.544981 | 4.2:+16570804 | None:intergenic |
| CGTTTATCCAAGCGCAGGAA+GGG | 0.547030 | 4.2:-16571016 | MS.gene028228:CDS |
| ACCATTATAAGGCGGTGCAT+GGG | 0.548023 | 4.2:+16571834 | None:intergenic |
| GATGATCACAATTTCCATAG+TGG | 0.554285 | 4.2:-16571394 | MS.gene028228:CDS |
| TGGCAGTAAAATAGCTACAC+AGG | 0.556312 | 4.2:-16571719 | MS.gene028228:CDS |
| AGCAAGAAAGTAGACACAAT+CGG | 0.559051 | 4.2:+16573211 | None:intergenic |
| GATCGAATGAGGACCGAAGT+GGG | 0.559665 | 4.2:-16570667 | MS.gene028228:CDS |
| TCCAGGATAGATTAAGAGGA+AGG | 0.562641 | 4.2:-16570724 | MS.gene028228:CDS |
| CGGGCATTAGGCCCATTGGT+TGG | 0.564557 | 4.2:+16571448 | None:intergenic |
| CTCTGTCTAAGTCCCTCTCT+AGG | 0.564616 | 4.2:+16570843 | None:intergenic |
| TCCTGGATCCTTCCCTCATG+AGG | 0.568928 | 4.2:+16570740 | None:intergenic |
| TGTCCCCACGCCACAGATTG+CGG | 0.569632 | 4.2:-16571869 | MS.gene028228:CDS |
| TGACTGTCACCACCATTTGG+TGG | 0.569677 | 4.2:+16570866 | None:intergenic |
| CGTATTCATTCAAAGAGTCT+GGG | 0.569875 | 4.2:+16571239 | None:intergenic |
| GACAGATGTGCCTTCCTGCA+TGG | 0.570126 | 4.2:-16571757 | MS.gene028228:CDS |
| GATCAGCCCAACTAGAAAGA+AGG | 0.570257 | 4.2:-16571093 | MS.gene028228:CDS |
| TTGAAAGAAAATGCAAGGCA+CGG | 0.577753 | 4.2:+16571801 | None:intergenic |
| CTTCAGCAGTCGATCGAATG+AGG | 0.577765 | 4.2:-16570678 | MS.gene028228:CDS |
| TGTTGCCGCAATCTGTGGCG+TGG | 0.581148 | 4.2:+16571864 | None:intergenic |
| GCAGATGTTGCCGCAATCTG+TGG | 0.582954 | 4.2:+16571859 | None:intergenic |
| TCGTTTATCCAAGCGCAGGA+AGG | 0.583309 | 4.2:-16571017 | MS.gene028228:CDS |
| GATGAATTTGGTAAAACAAG+AGG | 0.583764 | 4.2:-16571277 | MS.gene028228:CDS |
| TCACAATTTCCATAGTGGTA+AGG | 0.586818 | 4.2:-16571389 | MS.gene028228:CDS |
| TTGTGGCTGTTGGGCAACCA+TGG | 0.587839 | 4.2:+16573295 | None:intergenic |
| TCGTAGTCCTGACAGTGTTG+AGG | 0.587874 | 4.2:-16571056 | MS.gene028228:CDS |
| GAACCGGCAGTCACCTAGAG+AGG | 0.588474 | 4.2:-16570817 | MS.gene028228:CDS |
| GTTGATGCACACGATTAGAC+CGG | 0.589529 | 4.2:+16571428 | None:intergenic |
| TTCAATCGCCTCATGAGGGA+AGG | 0.590666 | 4.2:-16570748 | MS.gene028228:CDS |
| GATCATATGAGTCATAACCT+TGG | 0.590754 | 4.2:+16571152 | None:intergenic |
| CAGTCACCTAGAGAGGGACT+TGG | 0.591478 | 4.2:-16570810 | MS.gene028228:CDS |
| AAGGCTTCAATCGCCTCATG+AGG | 0.592807 | 4.2:-16570753 | MS.gene028228:CDS |
| ATCTGTCGTCGCTCATGATG+AGG | 0.592954 | 4.2:-16570981 | MS.gene028228:CDS |
| ACCACTTAGTGAAATTCTGA+AGG | 0.593072 | 4.2:-16570507 | MS.gene028228:CDS |
| AACCAATACCAACAATCTCT+AGG | 0.593370 | 4.2:+16572124 | None:intergenic |
| CGATCGAATGAGGACCGAAG+TGG | 0.593485 | 4.2:-16570668 | MS.gene028228:CDS |
| GACATCGTTTATCCAAGCGC+AGG | 0.594290 | 4.2:-16571021 | MS.gene028228:CDS |
| GTCTTGCTGAACTTAAGTAT+GGG | 0.596178 | 4.2:-16570628 | MS.gene028228:CDS |
| GATCAGGAGTATGAAGGTGA+AGG | 0.597456 | 4.2:-16570278 | MS.gene028228:CDS |
| GCCGAAGATCAGGAGTATGA+AGG | 0.599647 | 4.2:-16570284 | MS.gene028228:CDS |
| CATGCAAGAGCCATATGGCT+GGG | 0.599944 | 4.2:-16571128 | MS.gene028228:CDS |
| CACGGTCAATCATCTGAGGA+AGG | 0.602447 | 4.2:-16570326 | MS.gene028228:CDS |
| TAAAGAAACTCACCGGATGA+CGG | 0.603837 | 4.2:+16572068 | None:intergenic |
| CTAGAGAGGGACTTGGACAG+AGG | 0.604960 | 4.2:-16570803 | MS.gene028228:CDS |
| CGGGTTGTTAGGAACACCAC+CGG | 0.605352 | 4.2:-16571917 | MS.gene028228:CDS |
| TGAATATGAGCAAGGTGATG+AGG | 0.606447 | 4.2:-16570249 | MS.gene028228:CDS |
| GTTCCTAACAACCCGTCAAG+AGG | 0.607813 | 4.2:+16571925 | None:intergenic |
| TATGGCTGGGAACCTAGAAA+GGG | 0.609578 | 4.2:-16571115 | MS.gene028228:CDS |
| ATCATGTTTGCTACTGTGGG+AGG | 0.610033 | 4.2:+16570454 | None:intergenic |
| GATAGATTTCGTGTGCCCCA+AGG | 0.610131 | 4.2:-16571169 | MS.gene028228:CDS |
| ACAAGAGGTCAAGATGAAAG+AGG | 0.612476 | 4.2:-16571262 | MS.gene028228:CDS |
| ATATATGGAAGATGAAGATG+GGG | 0.612975 | 4.2:-16570183 | MS.gene028228:CDS |
| GACAATACTGATGTAACTCA+CGG | 0.620169 | 4.2:-16570344 | MS.gene028228:CDS |
| TTGCTGAACTTAAGTATGGG+AGG | 0.621411 | 4.2:-16570625 | MS.gene028228:CDS |
| GTGGTGACAGTCACCTAGAG+AGG | 0.623462 | 4.2:-16570856 | MS.gene028228:CDS |
| ACAGAGGAAGAATCAGTGGC+CGG | 0.626828 | 4.2:-16570787 | MS.gene028228:CDS |
| TTGTGATCATCTGGCAAACG+AGG | 0.626895 | 4.2:+16571406 | None:intergenic |
| TCCGTCAATAATCGTTTCCG+AGG | 0.626973 | 4.2:-16570902 | MS.gene028228:CDS |
| TTGGCGCAGAGAACCCACTT+CGG | 0.629325 | 4.2:+16570654 | None:intergenic |
| GGCAGTAAAATAGCTACACA+GGG | 0.630874 | 4.2:-16571718 | MS.gene028228:CDS |
| AGGGTTTGGTCCATGCAGGA+AGG | 0.631683 | 4.2:+16571747 | None:intergenic |
| GAAGGTTGCCAGATGACGAG+AGG | 0.639411 | 4.2:-16570706 | MS.gene028228:CDS |
| CTAGAGAGGGACTTAGACAG+AGG | 0.639929 | 4.2:-16570842 | MS.gene028228:CDS |
| GGATGACGGAATGAACACTT+GGG | 0.640470 | 4.2:+16572082 | None:intergenic |
| AGGCTTCAATCGCCTCATGA+GGG | 0.642774 | 4.2:-16570752 | MS.gene028228:CDS |
| ATGTACCGCCACCACCTGCA+GGG | 0.643731 | 4.2:-16571516 | MS.gene028228:CDS |
| AAATTCTGATTACTATCATG+GGG | 0.645440 | 4.2:-16571302 | MS.gene028228:CDS |
| TTGCCGCAATCTGTGGCGTG+GGG | 0.646254 | 4.2:+16571866 | None:intergenic |
| GTGGCCGGTTGTCATCTGGA+AGG | 0.646666 | 4.2:-16570772 | MS.gene028228:CDS |
| CATGGACCAAACCCTACCAA+TGG | 0.648418 | 4.2:-16571739 | MS.gene028228:CDS |
| ATAAATCTTCCACCAAATGG+TGG | 0.648459 | 4.2:-16570875 | MS.gene028228:CDS |
| TTGGACAGAGGAAGAATCAG+TGG | 0.649407 | 4.2:-16570791 | MS.gene028228:CDS |
| GGAGACTATGAATATGAGCA+AGG | 0.650461 | 4.2:-16570257 | MS.gene028228:CDS |
| TTGATGCACACGATTAGACC+GGG | 0.654044 | 4.2:+16571429 | None:intergenic |
| TGCGCTTGGATAAACGATGT+CGG | 0.656360 | 4.2:+16571023 | None:intergenic |
| AACTCACGGTCAATCATCTG+AGG | 0.657007 | 4.2:-16570330 | MS.gene028228:CDS |
| TCAATGACAATGACCAACCA+AGG | 0.673022 | 4.2:-16571694 | MS.gene028228:CDS |
| AACCGGCAGTCACCTAGAGA+GGG | 0.673757 | 4.2:-16570816 | MS.gene028228:CDS |
| TGAGTCTGAATCTGAAGTTG+TGG | 0.677604 | 4.2:+16573278 | None:intergenic |
| TGGTGACAGTCACCTAGAGA+GGG | 0.684816 | 4.2:-16570855 | MS.gene028228:CDS |
| TCATTATCTAACCCTGCAGG+TGG | 0.685323 | 4.2:+16571505 | None:intergenic |
| TGTTTACTACCATTATAAGG+CGG | 0.686484 | 4.2:+16571826 | None:intergenic |
| TCATATGAGTCATAACCTTG+GGG | 0.704228 | 4.2:+16571154 | None:intergenic |
| CTCTAGCATACTCACTATGG+CGG | 0.707134 | 4.2:+16572152 | None:intergenic |
| GCTACAAGAACATCAAACCC+AGG | 0.714968 | 4.2:+16571337 | None:intergenic |
| GCAGTAAAATAGCTACACAG+GGG | 0.802739 | 4.2:-16571717 | MS.gene028228:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTATTTTAATAATAATA+GGG | + | chr4.2:16570901-16570920 | None:intergenic | 0.0% |
| !! | AATTGATAAAGAAAAAAAAA+GGG | + | chr4.2:16570306-16570325 | None:intergenic | 10.0% |
| !! | TAATTGATAAAGAAAAAAAA+AGG | + | chr4.2:16570307-16570326 | None:intergenic | 10.0% |
| !!! | AAATTTAATTTTGATTAATG+GGG | - | chr4.2:16570395-16570414 | MS.gene028228:CDS | 10.0% |
| !!! | TTTATCAATTATATCTTTTA+GGG | - | chr4.2:16570316-16570335 | MS.gene028228:CDS | 10.0% |
| !! | CATAACTCAATTAAAATAAA+AGG | + | chr4.2:16571414-16571433 | None:intergenic | 15.0% |
| !!! | CTTTATCAATTATATCTTTT+AGG | - | chr4.2:16570315-16570334 | MS.gene028228:CDS | 15.0% |
| !! | AACAAAAAAAATTTCATGGA+TGG | + | chr4.2:16570484-16570503 | None:intergenic | 20.0% |
| !! | AATACTCTAAACTTAATGAA+AGG | + | chr4.2:16570810-16570829 | None:intergenic | 20.0% |
| !! | ACAAAAAAAATTTCATGGAT+GGG | + | chr4.2:16570483-16570502 | None:intergenic | 20.0% |
| !! | ACAGAAAAATATGTTTAAGT+TGG | - | chr4.2:16571893-16571912 | MS.gene028228:CDS | 20.0% |
| !! | CATCTGTTATTAAGAATATA+AGG | - | chr4.2:16571164-16571183 | MS.gene028228:CDS | 20.0% |
| !! | GTCTAACAAAAAAAATTTCA+TGG | + | chr4.2:16570488-16570507 | None:intergenic | 20.0% |
| !!! | AACTTAAACATATTTTTCTG+TGG | + | chr4.2:16571894-16571913 | None:intergenic | 20.0% |
| !!! | ATCTACAATTCAACAATTTT+AGG | + | chr4.2:16570458-16570477 | None:intergenic | 20.0% |
| !!! | TCTACAATTCAACAATTTTA+GGG | + | chr4.2:16570457-16570476 | None:intergenic | 20.0% |
| ! | AAATCAAGAGCAAGAATATA+TGG | - | chr4.2:16573240-16573259 | MS.gene028228:CDS | 25.0% |
| ! | AAATTCTGATTACTATCATG+GGG | - | chr4.2:16572136-16572155 | MS.gene028228:CDS | 25.0% |
| ! | AATAAGCTATTTATCCAAAC+AGG | - | chr4.2:16570874-16570893 | MS.gene028228:CDS | 25.0% |
| ! | AATAATGACCAACAATCATT+TGG | - | chr4.2:16572845-16572864 | MS.gene028228:intron | 25.0% |
| ! | AATATATGGAAGATGAAGAT+GGG | - | chr4.2:16573254-16573273 | MS.gene028228:CDS | 25.0% |
| ! | AGAAATTCTGATTACTATCA+TGG | - | chr4.2:16572134-16572153 | MS.gene028228:CDS | 25.0% |
| ! | AGTATTTGAGTCTTGATTAT+AGG | - | chr4.2:16570933-16570952 | MS.gene028228:CDS | 25.0% |
| ! | ATAAGCTATTTATCCAAACA+GGG | - | chr4.2:16570875-16570894 | MS.gene028228:CDS | 25.0% |
| ! | GAAATTCTGATTACTATCAT+GGG | - | chr4.2:16572135-16572154 | MS.gene028228:CDS | 25.0% |
| ! | TTCTCTTCTTTATTGAAACA+GGG | - | chr4.2:16571248-16571267 | MS.gene028228:CDS | 25.0% |
| !! | CCTTTTGTATTTAACATAGT+GGG | - | chr4.2:16570612-16570631 | MS.gene028228:CDS | 25.0% |
| !! | TCCTTTTGTATTTAACATAG+TGG | - | chr4.2:16570611-16570630 | MS.gene028228:CDS | 25.0% |
| !!! | AAAAAGGGCTTTTTAGAAAA+AGG | + | chr4.2:16570291-16570310 | None:intergenic | 25.0% |
| !!! | GTTAGACTGTGAATTTTTTA+TGG | - | chr4.2:16570501-16570520 | MS.gene028228:CDS | 25.0% |
| !!! | TAATTTTGATTAATGGGGTT+TGG | - | chr4.2:16570400-16570419 | MS.gene028228:CDS | 25.0% |
| !!! | TGATCATCTTGTTATTTGAT+TGG | - | chr4.2:16570551-16570570 | MS.gene028228:CDS | 25.0% |
| !!! | TTTCAGATTCGAATTAGTTT+TGG | - | chr4.2:16570339-16570358 | MS.gene028228:CDS | 25.0% |
| AAAGGAATGATCAAAAAGAG+AGG | + | chr4.2:16570597-16570616 | None:intergenic | 30.0% | |
| AATGAAGGAATTACCGAAAA+CGG | - | chr4.2:16573016-16573035 | MS.gene028228:intron | 30.0% | |
| AGAATAAATCTTCCACCAAA+TGG | - | chr4.2:16572560-16572579 | MS.gene028228:intron | 30.0% | |
| AGTCAAAAGATAGGACAAAA+TGG | + | chr4.2:16571449-16571468 | None:intergenic | 30.0% | |
| AGTTAACAAAAACAACTTCC+AGG | + | chr4.2:16571004-16571023 | None:intergenic | 30.0% | |
| ATACAGACAAGTCAAAAGAT+AGG | + | chr4.2:16571458-16571477 | None:intergenic | 30.0% | |
| ATATATGGAAGATGAAGATG+GGG | - | chr4.2:16573255-16573274 | MS.gene028228:CDS | 30.0% | |
| ATCATATGAGTCATAACCTT+GGG | + | chr4.2:16572288-16572307 | None:intergenic | 30.0% | |
| CATGATGACAATAAGAATGA+AGG | - | chr4.2:16573001-16573020 | MS.gene028228:intron | 30.0% | |
| CCAAAAGGTTTCTTAAAACT+TGG | + | chr4.2:16571780-16571799 | None:intergenic | 30.0% | |
| CCCACTATGTTAAATACAAA+AGG | + | chr4.2:16570615-16570634 | None:intergenic | 30.0% | |
| CTTTGAATGAATACGATGTA+GGG | - | chr4.2:16572207-16572226 | MS.gene028228:intron | 30.0% | |
| GAATATATGGAAGATGAAGA+TGG | - | chr4.2:16573253-16573272 | MS.gene028228:CDS | 30.0% | |
| GATGAATTTGGTAAAACAAG+AGG | - | chr4.2:16572161-16572180 | MS.gene028228:CDS | 30.0% | |
| GCTTGTTTACTACCATTATA+AGG | + | chr4.2:16571618-16571637 | None:intergenic | 30.0% | |
| GTACATCATCTTCATATTGT+TGG | + | chr4.2:16572895-16572914 | None:intergenic | 30.0% | |
| GTTCTCTTCTTTATTGAAAC+AGG | - | chr4.2:16571247-16571266 | MS.gene028228:CDS | 30.0% | |
| TCTTTGAATGAATACGATGT+AGG | - | chr4.2:16572206-16572225 | MS.gene028228:intron | 30.0% | |
| TGTTCAGCAAAAACTAATCA+TGG | + | chr4.2:16571136-16571155 | None:intergenic | 30.0% | |
| TGTTTACTACCATTATAAGG+CGG | + | chr4.2:16571615-16571634 | None:intergenic | 30.0% | |
| ! | AGAATTTCACTAAGTGGTTT+TGG | + | chr4.2:16572929-16572948 | None:intergenic | 30.0% |
| ! | CCTTGCATTTTCTTTCAAAA+GGG | - | chr4.2:16571642-16571661 | MS.gene028228:CDS | 30.0% |
| ! | CTTGCATTTTCTTTCAAAAG+GGG | - | chr4.2:16571643-16571662 | MS.gene028228:CDS | 30.0% |
| ! | TATGAGTATGAACAAGTTGA+GGG | - | chr4.2:16573214-16573233 | MS.gene028228:CDS | 30.0% |
| ! | TTAAGTTCAGCAAGACTTTT+TGG | + | chr4.2:16572806-16572825 | None:intergenic | 30.0% |
| !! | TTTTTATGGATTGCGTTTCT+TGG | - | chr4.2:16570515-16570534 | MS.gene028228:CDS | 30.0% |
| !!! | ACATGCTGCTTTTATTTTTG+TGG | - | chr4.2:16571093-16571112 | MS.gene028228:CDS | 30.0% |
| !!! | AGTTTTAAGAAACCTTTTGG+CGG | - | chr4.2:16571780-16571799 | MS.gene028228:CDS | 30.0% |
| !!! | CCAAGTTTTAAGAAACCTTT+TGG | - | chr4.2:16571777-16571796 | MS.gene028228:CDS | 30.0% |
| !!! | TATCTTTTGACTTGTCTGTA+TGG | - | chr4.2:16571457-16571476 | MS.gene028228:CDS | 30.0% |
| !!! | TGTGTTTTTTTGAGTAATCC+TGG | - | chr4.2:16570983-16571002 | MS.gene028228:CDS | 30.0% |
| AACCAATACCAACAATCTCT+AGG | + | chr4.2:16571317-16571336 | None:intergenic | 35.0% | |
| AAGAACAACACCAATCTTCT+TGG | + | chr4.2:16573290-16573309 | None:intergenic | 35.0% | |
| AATAATAATAGGGCCCTGTT+TGG | + | chr4.2:16570891-16570910 | None:intergenic | 35.0% | |
| ACCAACAATCATTTGGAAAG+AGG | - | chr4.2:16572852-16572871 | MS.gene028228:intron | 35.0% | |
| ACCACTTAGTGAAATTCTGA+AGG | - | chr4.2:16572931-16572950 | MS.gene028228:intron | 35.0% | |
| ACTGCTAACAAACACTATAC+AGG | + | chr4.2:16570963-16570982 | None:intergenic | 35.0% | |
| AGCAAGAAAGTAGACACAAT+CGG | + | chr4.2:16570230-16570249 | None:intergenic | 35.0% | |
| AGTCTTGCTGAACTTAAGTA+TGG | - | chr4.2:16572809-16572828 | MS.gene028228:intron | 35.0% | |
| ATAAATCTTCCACCAAATGG+TGG | - | chr4.2:16572563-16572582 | MS.gene028228:intron | 35.0% | |
| ATCCTAGAGATTGTTGGTAT+TGG | - | chr4.2:16571312-16571331 | MS.gene028228:CDS | 35.0% | |
| CATGTGTATAGTGTAGTGAA+TGG | - | chr4.2:16570784-16570803 | MS.gene028228:CDS | 35.0% | |
| CGTATTCATTCAAAGAGTCT+GGG | + | chr4.2:16572202-16572221 | None:intergenic | 35.0% | |
| CTATGGAAATTGTGATCATC+TGG | + | chr4.2:16572044-16572063 | None:intergenic | 35.0% | |
| GAACCCTAATTGTGATTGTT+AGG | - | chr4.2:16570664-16570683 | MS.gene028228:CDS | 35.0% | |
| GAAGATGATGTACCATTTGA+AGG | - | chr4.2:16572902-16572921 | MS.gene028228:intron | 35.0% | |
| GACAATACTGATGTAACTCA+CGG | - | chr4.2:16573094-16573113 | MS.gene028228:intron | 35.0% | |
| GATCATATGAGTCATAACCT+TGG | + | chr4.2:16572289-16572308 | None:intergenic | 35.0% | |
| GATGATCACAATTTCCATAG+TGG | - | chr4.2:16572044-16572063 | MS.gene028228:intron | 35.0% | |
| GGTCCTAACAATCACAATTA+GGG | + | chr4.2:16570670-16570689 | None:intergenic | 35.0% | |
| GTATGAGTATGAACAAGTTG+AGG | - | chr4.2:16573213-16573232 | MS.gene028228:CDS | 35.0% | |
| GTCTTGCTGAACTTAAGTAT+GGG | - | chr4.2:16572810-16572829 | MS.gene028228:intron | 35.0% | |
| GTGAAGGAAATTAGGATGAA+CGG | - | chr4.2:16570634-16570653 | MS.gene028228:CDS | 35.0% | |
| TATCATGGGGAAGATGAATT+TGG | - | chr4.2:16572149-16572168 | MS.gene028228:CDS | 35.0% | |
| TCACAATTTCCATAGTGGTA+AGG | - | chr4.2:16572049-16572068 | MS.gene028228:intron | 35.0% | |
| TCATATGAGTCATAACCTTG+GGG | + | chr4.2:16572287-16572306 | None:intergenic | 35.0% | |
| TCCTCTTTCCAAATGATTGT+TGG | + | chr4.2:16572856-16572875 | None:intergenic | 35.0% | |
| TCCTTCAGAATTTCACTAAG+TGG | + | chr4.2:16572935-16572954 | None:intergenic | 35.0% | |
| TCGTATTCATTCAAAGAGTC+TGG | + | chr4.2:16572203-16572222 | None:intergenic | 35.0% | |
| TGAAGGAAATTAGGATGAAC+GGG | - | chr4.2:16570635-16570654 | MS.gene028228:CDS | 35.0% | |
| TGGTCCTAACAATCACAATT+AGG | + | chr4.2:16570671-16570690 | None:intergenic | 35.0% | |
| TTGAAAAACATGCACCAGAA+AGG | - | chr4.2:16571805-16571824 | MS.gene028228:CDS | 35.0% | |
| TTGAAAGAAAATGCAAGGCA+CGG | + | chr4.2:16571640-16571659 | None:intergenic | 35.0% | |
| ! | AAGAACCTTTTTGCATGTCA+AGG | + | chr4.2:16570257-16570276 | None:intergenic | 35.0% |
| ! | AGAACCTTTTTGCATGTCAA+GGG | + | chr4.2:16570256-16570275 | None:intergenic | 35.0% |
| ! | CAAAAGGGGTTTTGCTTAAA+AGG | - | chr4.2:16571657-16571676 | MS.gene028228:CDS | 35.0% |
| ! | CTATTTTACTGCCATTGGTA+GGG | + | chr4.2:16571713-16571732 | None:intergenic | 35.0% |
| ! | GAAATTCTGAAGGAGAAGAA+AGG | - | chr4.2:16572941-16572960 | MS.gene028228:intron | 35.0% |
| ! | GCCTTGCATTTTCTTTCAAA+AGG | - | chr4.2:16571641-16571660 | MS.gene028228:CDS | 35.0% |
| !! | ATGAGTCCTTCTTTCTAGTT+GGG | + | chr4.2:16572354-16572373 | None:intergenic | 35.0% |
| !! | CCCTTTTGAAAGAAAATGCA+AGG | + | chr4.2:16571645-16571664 | None:intergenic | 35.0% |
| !! | GATTGTTGGTATTGGTTGAA+TGG | - | chr4.2:16571320-16571339 | MS.gene028228:CDS | 35.0% |
| !! | GTATTTAACATAGTGGGTGA+AGG | - | chr4.2:16570618-16570637 | MS.gene028228:CDS | 35.0% |
| !! | TGTAGCTATTTTACTGCCAT+TGG | + | chr4.2:16571718-16571737 | None:intergenic | 35.0% |
| !!! | AGCAAAGTCATCGATTTTCT+CGG | - | chr4.2:16572480-16572499 | MS.gene028228:intron | 35.0% |
| AACACCTGCAACATTTGCTT+GGG | + | chr4.2:16571838-16571857 | None:intergenic | 40.0% | |
| ACAAGAGGTCAAGATGAAAG+AGG | - | chr4.2:16572176-16572195 | MS.gene028228:intron | 40.0% | |
| ACCTTCATACTCCTGATCTT+CGG | + | chr4.2:16573158-16573177 | None:intergenic | 40.0% | |
| ACCTTCCTCTTAATCTATCC+TGG | + | chr4.2:16572718-16572737 | None:intergenic | 40.0% | |
| AGGATCCAGGATAGATTAAG+AGG | - | chr4.2:16572710-16572729 | MS.gene028228:intron | 40.0% | |
| CTCAAGATGAAGCCTTGAAA+AGG | - | chr4.2:16570200-16570219 | MS.gene028228:CDS | 40.0% | |
| GAAGGAAATTAGGATGAACG+GGG | - | chr4.2:16570636-16570655 | MS.gene028228:CDS | 40.0% | |
| GAGTCAATCCTAGAGATTGT+TGG | - | chr4.2:16571306-16571325 | MS.gene028228:CDS | 40.0% | |
| GATGACTTTGCCAAGAAGAT+TGG | - | chr4.2:16573277-16573296 | MS.gene028228:CDS | 40.0% | |
| GCAGTAAAATAGCTACACAG+GGG | - | chr4.2:16571721-16571740 | MS.gene028228:CDS | 40.0% | |
| GCTGATGTCAATTGAGCATT+TGG | - | chr4.2:16570750-16570769 | MS.gene028228:CDS | 40.0% | |
| GGAGACTATGAATATGAGCA+AGG | - | chr4.2:16573181-16573200 | MS.gene028228:intron | 40.0% | |
| GGCAGTAAAATAGCTACACA+GGG | - | chr4.2:16571720-16571739 | MS.gene028228:CDS | 40.0% | |
| GTGGAAGATTTATTCTGCCT+CGG | + | chr4.2:16572556-16572575 | None:intergenic | 40.0% | |
| TAAAGAAACTCACCGGATGA+CGG | + | chr4.2:16571373-16571392 | None:intergenic | 40.0% | |
| TCAATGACAATGACCAACCA+AGG | - | chr4.2:16571744-16571763 | MS.gene028228:CDS | 40.0% | |
| TCCAGGATAGATTAAGAGGA+AGG | - | chr4.2:16572714-16572733 | MS.gene028228:intron | 40.0% | |
| TGAATATGAGCAAGGTGATG+AGG | - | chr4.2:16573189-16573208 | MS.gene028228:intron | 40.0% | |
| TGACTCTAGCATACTCACTA+TGG | + | chr4.2:16571292-16571311 | None:intergenic | 40.0% | |
| TGGAAAGAGGAAAAGCTTCA+GGG | - | chr4.2:16572865-16572884 | MS.gene028228:intron | 40.0% | |
| TGGCAGTAAAATAGCTACAC+AGG | - | chr4.2:16571719-16571738 | MS.gene028228:CDS | 40.0% | |
| TTCTCCCTTGACATGCAAAA+AGG | - | chr4.2:16570249-16570268 | MS.gene028228:CDS | 40.0% | |
| TTGCTGAACTTAAGTATGGG+AGG | - | chr4.2:16572813-16572832 | MS.gene028228:intron | 40.0% | |
| TTGGAAAGAGGAAAAGCTTC+AGG | - | chr4.2:16572864-16572883 | MS.gene028228:intron | 40.0% | |
| ! | AATCTGAAGTTGTGGCTGTT+GGG | + | chr4.2:16570155-16570174 | None:intergenic | 40.0% |
| ! | CTCTGACAATGTTCCGTTTT+CGG | + | chr4.2:16573032-16573051 | None:intergenic | 40.0% |
| ! | GACATCAGCTTACACTTTTG+TGG | + | chr4.2:16570739-16570758 | None:intergenic | 40.0% |
| ! | GATGAGTCCTTCTTTCTAGT+TGG | + | chr4.2:16572355-16572374 | None:intergenic | 40.0% |
| ! | GTCATCATGTTTGCTACTGT+GGG | + | chr4.2:16572990-16573009 | None:intergenic | 40.0% |
| ! | GTGGAGCAGTCTCAAATTTT+TGG | + | chr4.2:16571875-16571894 | None:intergenic | 40.0% |
| ! | TGAGTCTGAATCTGAAGTTG+TGG | + | chr4.2:16570163-16570182 | None:intergenic | 40.0% |
| ! | TGTCATCATGTTTGCTACTG+TGG | + | chr4.2:16572991-16573010 | None:intergenic | 40.0% |
| ! | TTTTACATGCAGCCTCTTGA+CGG | - | chr4.2:16571501-16571520 | MS.gene028228:CDS | 40.0% |
| !! | ACAATCGGTGTTCCTTTTCA+AGG | + | chr4.2:16570215-16570234 | None:intergenic | 40.0% |
| !! | CATAGTGGGTGAAGGAAATT+AGG | - | chr4.2:16570626-16570645 | MS.gene028228:CDS | 40.0% |
| !! | CTTTTCAAGGCTTCATCTTG+AGG | + | chr4.2:16570202-16570221 | None:intergenic | 40.0% |
| !! | GCAGTCTCAAATTTTTGGAC+AGG | + | chr4.2:16571870-16571889 | None:intergenic | 40.0% |
| !! | GCTATTTTACTGCCATTGGT+AGG | + | chr4.2:16571714-16571733 | None:intergenic | 40.0% |
| !! | TGTTTTTCAATGCCGCCAAA+AGG | + | chr4.2:16571795-16571814 | None:intergenic | 40.0% |
| !!! | AAGTCATCGATTTTCTCGGA+AGG | - | chr4.2:16572484-16572503 | MS.gene028228:intron | 40.0% |
| !!! | AGTGGTTTTGGACCTTCAAA+TGG | + | chr4.2:16572917-16572936 | None:intergenic | 40.0% |
| AAAGGACAGAAAACTCGTGC+TGG | + | chr4.2:16571396-16571415 | None:intergenic | 45.0% | |
| AACTCACGGTCAATCATCTG+AGG | - | chr4.2:16573108-16573127 | MS.gene028228:intron | 45.0% | |
| AACTTGGATTCTCAGCTCCT+TGG | + | chr4.2:16571764-16571783 | None:intergenic | 45.0% | |
| AAGGCTTCATCTTGAGGAGA+AGG | + | chr4.2:16570196-16570215 | None:intergenic | 45.0% | |
| AAGTTTCTCCTCTCGTCATC+TGG | + | chr4.2:16572743-16572762 | None:intergenic | 45.0% | |
| ACCATTATAAGGCGGTGCAT+GGG | + | chr4.2:16571607-16571626 | None:intergenic | 45.0% | |
| ACCTGCAGGGTTAGATAATG+AGG | - | chr4.2:16571935-16571954 | MS.gene028228:intron | 45.0% | |
| ACTTCCCAAGCAAATGTTGC+AGG | - | chr4.2:16571831-16571850 | MS.gene028228:CDS | 45.0% | |
| ATATGGCTGGGAACCTAGAA+AGG | - | chr4.2:16572322-16572341 | MS.gene028228:intron | 45.0% | |
| ATCTCTCATTTGCAGGCAAC+TGG | + | chr4.2:16572517-16572536 | None:intergenic | 45.0% | |
| CAACACCTGCAACATTTGCT+TGG | + | chr4.2:16571839-16571858 | None:intergenic | 45.0% | |
| CAAGTGTTCATTCCGTCATC+CGG | - | chr4.2:16571358-16571377 | MS.gene028228:CDS | 45.0% | |
| CGTCATTGTCCTTACCACTA+TGG | + | chr4.2:16572061-16572080 | None:intergenic | 45.0% | |
| CTCTAGCATACTCACTATGG+CGG | + | chr4.2:16571289-16571308 | None:intergenic | 45.0% | |
| CTGAAGGAGAAGAAAGGAGT+TGG | - | chr4.2:16572947-16572966 | MS.gene028228:intron | 45.0% | |
| GACTTAGACAGAGGAAGAAC+CGG | - | chr4.2:16572605-16572624 | MS.gene028228:intron | 45.0% | |
| GATCACATGCAAGAGCCATA+TGG | - | chr4.2:16572305-16572324 | MS.gene028228:intron | 45.0% | |
| GATCAGCCCAACTAGAAAGA+AGG | - | chr4.2:16572345-16572364 | MS.gene028228:intron | 45.0% | |
| GCCTCGGAAACGATTATTGA+CGG | + | chr4.2:16572540-16572559 | None:intergenic | 45.0% | |
| GCTACAAGAACATCAAACCC+AGG | + | chr4.2:16572104-16572123 | None:intergenic | 45.0% | |
| GGAAGAAGAGTCCAAGATTC+AGG | - | chr4.2:16573057-16573076 | MS.gene028228:intron | 45.0% | |
| GTTGATGCACACGATTAGAC+CGG | + | chr4.2:16572013-16572032 | None:intergenic | 45.0% | |
| TACCATTATAAGGCGGTGCA+TGG | + | chr4.2:16571608-16571627 | None:intergenic | 45.0% | |
| TATGGCTGGGAACCTAGAAA+GGG | - | chr4.2:16572323-16572342 | MS.gene028228:intron | 45.0% | |
| TCATTATCTAACCCTGCAGG+TGG | + | chr4.2:16571936-16571955 | None:intergenic | 45.0% | |
| TCCGTCAATAATCGTTTCCG+AGG | - | chr4.2:16572536-16572555 | MS.gene028228:intron | 45.0% | |
| TGCGCTTGGATAAACGATGT+CGG | + | chr4.2:16572418-16572437 | None:intergenic | 45.0% | |
| TTACTGCCATTGGTAGGGTT+TGG | + | chr4.2:16571708-16571727 | None:intergenic | 45.0% | |
| TTGATGCACACGATTAGACC+GGG | + | chr4.2:16572012-16572031 | None:intergenic | 45.0% | |
| TTGGACAGAGGAAGAATCAG+TGG | - | chr4.2:16572647-16572666 | MS.gene028228:intron | 45.0% | |
| TTGTGATCATCTGGCAAACG+AGG | + | chr4.2:16572035-16572054 | None:intergenic | 45.0% | |
| TTTACATGCAGCCTCTTGAC+GGG | - | chr4.2:16571502-16571521 | MS.gene028228:CDS | 45.0% | |
| TTTCTAGGTTCCCAGCCATA+TGG | + | chr4.2:16572323-16572342 | None:intergenic | 45.0% | |
| ! | ATCATGTTTGCTACTGTGGG+AGG | + | chr4.2:16572987-16573006 | None:intergenic | 45.0% |
| ! | GAATCTGAAGTTGTGGCTGT+TGG | + | chr4.2:16570156-16570175 | None:intergenic | 45.0% |
| ! | GATCAGGAGTATGAAGGTGA+AGG | - | chr4.2:16573160-16573179 | MS.gene028228:intron | 45.0% |
| ! | GCTTGGGAAGTTTTCCTTTC+TGG | + | chr4.2:16571822-16571841 | None:intergenic | 45.0% |
| ! | GTGCTGGTAAAGAAACTCAC+CGG | + | chr4.2:16571380-16571399 | None:intergenic | 45.0% |
| ! | TCATCTTGAGGAGAAGGTGT+TGG | + | chr4.2:16570190-16570209 | None:intergenic | 45.0% |
| ! | TTGACGGATCTCTCATTTGC+AGG | + | chr4.2:16572524-16572543 | None:intergenic | 45.0% |
| !! | GGATGACGGAATGAACACTT+GGG | + | chr4.2:16571359-16571378 | None:intergenic | 45.0% |
| !! | TAATAAAATAACAAAAATTA+TGG | + | chr4.2:16570691-16570710 | None:intergenic | 5.0% |
| !!! | AAAAATTTAATTTTGATTAA+TGG | - | chr4.2:16570393-16570412 | MS.gene028228:CDS | 5.0% |
| !!! | AAAATTTAATTTTGATTAAT+GGG | - | chr4.2:16570394-16570413 | MS.gene028228:CDS | 5.0% |
| !!! | CTTTTTATTTTAATAATAAT+AGG | + | chr4.2:16570902-16570921 | None:intergenic | 5.0% |
| AAGGCTTCAATCGCCTCATG+AGG | - | chr4.2:16572685-16572704 | MS.gene028228:intron | 50.0% | |
| ACACGATTAGACCGGGCATT+AGG | + | chr4.2:16572005-16572024 | None:intergenic | 50.0% | |
| ACAGAGGAAGAATCAGTGGC+CGG | - | chr4.2:16572651-16572670 | MS.gene028228:intron | 50.0% | |
| ACATGCAAGAGCCATATGGC+TGG | - | chr4.2:16572309-16572328 | MS.gene028228:intron | 50.0% | |
| ACCCATGCACCGCCTTATAA+TGG | - | chr4.2:16571603-16571622 | MS.gene028228:CDS | 50.0% | |
| AGGCTTCAATCGCCTCATGA+GGG | - | chr4.2:16572686-16572705 | MS.gene028228:intron | 50.0% | |
| AGGTGACTGTCACCACCATT+TGG | + | chr4.2:16572578-16572597 | None:intergenic | 50.0% | |
| AGTTGGGCTGATCCCTTTCT+AGG | + | chr4.2:16572338-16572357 | None:intergenic | 50.0% | |
| ATCTGTCGTCGCTCATGATG+AGG | - | chr4.2:16572457-16572476 | MS.gene028228:intron | 50.0% | |
| CACGGTCAATCATCTGAGGA+AGG | - | chr4.2:16573112-16573131 | MS.gene028228:intron | 50.0% | |
| CATGCAAGAGCCATATGGCT+GGG | - | chr4.2:16572310-16572329 | MS.gene028228:intron | 50.0% | |
| CATGGACCAAACCCTACCAA+TGG | - | chr4.2:16571699-16571718 | MS.gene028228:CDS | 50.0% | |
| CGGAACATTGTCAGAGAGCA+AGG | - | chr4.2:16573036-16573055 | MS.gene028228:intron | 50.0% | |
| CGTTTATCCAAGCGCAGGAA+GGG | - | chr4.2:16572422-16572441 | MS.gene028228:intron | 50.0% | |
| CTAGAGAGGGACTTAGACAG+AGG | - | chr4.2:16572596-16572615 | MS.gene028228:intron | 50.0% | |
| CTCTGTCTAAGTCCCTCTCT+AGG | + | chr4.2:16572598-16572617 | None:intergenic | 50.0% | |
| CTTCAGCAGTCGATCGAATG+AGG | - | chr4.2:16572760-16572779 | MS.gene028228:intron | 50.0% | |
| GAAGCCTTCCAGATGACAAC+CGG | + | chr4.2:16572673-16572692 | None:intergenic | 50.0% | |
| GACATCGTTTATCCAAGCGC+AGG | - | chr4.2:16572417-16572436 | MS.gene028228:intron | 50.0% | |
| GAGAAGAAAGGAGTTGGAGC+TGG | - | chr4.2:16572953-16572972 | MS.gene028228:intron | 50.0% | |
| GATAGATTTCGTGTGCCCCA+AGG | - | chr4.2:16572269-16572288 | MS.gene028228:intron | 50.0% | |
| GATCGAATGAGGACCGAAGT+GGG | - | chr4.2:16572771-16572790 | MS.gene028228:intron | 50.0% | |
| GCCTCATTATCTAACCCTGC+AGG | + | chr4.2:16571939-16571958 | None:intergenic | 50.0% | |
| GTTCCTAACAACCCGTCAAG+AGG | + | chr4.2:16571516-16571535 | None:intergenic | 50.0% | |
| TCCAAGATTCAGGCTGCTGA+TGG | - | chr4.2:16573067-16573086 | MS.gene028228:intron | 50.0% | |
| TCCATCAGCAGCCTGAATCT+TGG | + | chr4.2:16573071-16573090 | None:intergenic | 50.0% | |
| TCGTAGTCCTGACAGTGTTG+AGG | - | chr4.2:16572382-16572401 | MS.gene028228:intron | 50.0% | |
| TCGTTTATCCAAGCGCAGGA+AGG | - | chr4.2:16572421-16572440 | MS.gene028228:intron | 50.0% | |
| TGACTGTCACCACCATTTGG+TGG | + | chr4.2:16572575-16572594 | None:intergenic | 50.0% | |
| TGGATTCTCAGCTCCTTGGT+TGG | + | chr4.2:16571760-16571779 | None:intergenic | 50.0% | |
| TGGTGACAGTCACCTAGAGA+GGG | - | chr4.2:16572583-16572602 | MS.gene028228:intron | 50.0% | |
| TTATCTAACCCTGCAGGTGG+TGG | + | chr4.2:16571933-16571952 | None:intergenic | 50.0% | |
| TTCAATCGCCTCATGAGGGA+AGG | - | chr4.2:16572690-16572709 | MS.gene028228:intron | 50.0% | |
| TTCTCAGAGAGTCGTCTCCT+GGG | - | chr4.2:16572084-16572103 | MS.gene028228:CDS | 50.0% | |
| TTGTGGCTGTGCGAATCATG+TGG | - | chr4.2:16571110-16571129 | MS.gene028228:CDS | 50.0% | |
| TTTCTCAGAGAGTCGTCTCC+TGG | - | chr4.2:16572083-16572102 | MS.gene028228:CDS | 50.0% | |
| ! | GCCGAAGATCAGGAGTATGA+AGG | - | chr4.2:16573154-16573173 | MS.gene028228:intron | 50.0% |
| ! | TCTGAGACCTCAACACTGTC+AGG | + | chr4.2:16572392-16572411 | None:intergenic | 50.0% |
| !! | CGGATGACGGAATGAACACT+TGG | + | chr4.2:16571360-16571379 | None:intergenic | 50.0% |
| AAAGGAGTTGGAGCTGGTGC+AGG | - | chr4.2:16572959-16572978 | MS.gene028228:intron | 55.0% | |
| AACCGGCAGTCACCTAGAGA+GGG | - | chr4.2:16572622-16572641 | MS.gene028228:intron | 55.0% | |
| AGTTCTCCACCGCCAACCAA+TGG | - | chr4.2:16571978-16571997 | MS.gene028228:intron | 55.0% | |
| ATCAGTGGCCGGTTGTCATC+TGG | - | chr4.2:16572662-16572681 | MS.gene028228:intron | 55.0% | |
| CAACCAATGGGCCTAATGCC+CGG | - | chr4.2:16571991-16572010 | MS.gene028228:intron | 55.0% | |
| CAGTCACCTAGAGAGGGACT+TGG | - | chr4.2:16572589-16572608 | MS.gene028228:intron | 55.0% | |
| CGATCGAATGAGGACCGAAG+TGG | - | chr4.2:16572770-16572789 | MS.gene028228:intron | 55.0% | |
| CGATGAAGCTGCCGAAGATC+AGG | - | chr4.2:16573144-16573163 | MS.gene028228:intron | 55.0% | |
| CGGGTTGTTAGGAACACCAC+CGG | - | chr4.2:16571521-16571540 | MS.gene028228:CDS | 55.0% | |
| CTAGAGAGGGACTTGGACAG+AGG | - | chr4.2:16572635-16572654 | MS.gene028228:intron | 55.0% | |
| CTCTGTCCAAGTCCCTCTCT+AGG | + | chr4.2:16572637-16572656 | None:intergenic | 55.0% | |
| GAAGGTTGCCAGATGACGAG+AGG | - | chr4.2:16572732-16572751 | MS.gene028228:intron | 55.0% | |
| GACAGATGTGCCTTCCTGCA+TGG | - | chr4.2:16571681-16571700 | MS.gene028228:CDS | 55.0% | |
| GCAGATGTTGCCGCAATCTG+TGG | + | chr4.2:16571582-16571601 | None:intergenic | 55.0% | |
| GTGGTGACAGTCACCTAGAG+AGG | - | chr4.2:16572582-16572601 | MS.gene028228:intron | 55.0% | |
| GTTCTCCACCGCCAACCAAT+GGG | - | chr4.2:16571979-16571998 | MS.gene028228:intron | 55.0% | |
| TCCAAGCGCAGGAAGGGAAA+CGG | - | chr4.2:16572428-16572447 | MS.gene028228:intron | 55.0% | |
| TCCTGGATCCTTCCCTCATG+AGG | + | chr4.2:16572701-16572720 | None:intergenic | 55.0% | |
| TTGGCGCAGAGAACCCACTT+CGG | + | chr4.2:16572787-16572806 | None:intergenic | 55.0% | |
| ! | AGGGTTTGGTCCATGCAGGA+AGG | + | chr4.2:16571694-16571713 | None:intergenic | 55.0% |
| ! | GCATTAGGCCCATTGGTTGG+CGG | + | chr4.2:16571990-16572009 | None:intergenic | 55.0% |
| ! | TGGTAGGGTTTGGTCCATGC+AGG | + | chr4.2:16571698-16571717 | None:intergenic | 55.0% |
| !! | CAGCCTCTTGACGGGTTGTT+AGG | - | chr4.2:16571510-16571529 | MS.gene028228:CDS | 55.0% |
| AGACCGGGCATTAGGCCCAT+TGG | + | chr4.2:16571997-16572016 | None:intergenic | 60.0% | |
| ATCTGTGGCGTGGGGACAGA+TGG | + | chr4.2:16571567-16571586 | None:intergenic | 60.0% | |
| ATGTACCGCCACCACCTGCA+GGG | - | chr4.2:16571922-16571941 | MS.gene028228:CDS | 60.0% | |
| CGGGCATTAGGCCCATTGGT+TGG | + | chr4.2:16571993-16572012 | None:intergenic | 60.0% | |
| GAACCGGCAGTCACCTAGAG+AGG | - | chr4.2:16572621-16572640 | MS.gene028228:intron | 60.0% | |
| GCCTCATGAGGGAAGGATCC+AGG | - | chr4.2:16572697-16572716 | MS.gene028228:intron | 60.0% | |
| GTCCCTCTCTAGGTGACTGC+CGG | + | chr4.2:16572627-16572646 | None:intergenic | 60.0% | |
| GTGGCCGGTTGTCATCTGGA+AGG | - | chr4.2:16572666-16572685 | MS.gene028228:intron | 60.0% | |
| GTTGCCGCAATCTGTGGCGT+GGG | + | chr4.2:16571576-16571595 | None:intergenic | 60.0% | |
| TGTCCCCACGCCACAGATTG+CGG | - | chr4.2:16571569-16571588 | MS.gene028228:CDS | 60.0% | |
| TGTTGCCGCAATCTGTGGCG+TGG | + | chr4.2:16571577-16571596 | None:intergenic | 60.0% | |
| TTGCCGCAATCTGTGGCGTG+GGG | + | chr4.2:16571575-16571594 | None:intergenic | 60.0% | |
| ! | TCTAACCCTGCAGGTGGTGG+CGG | + | chr4.2:16571930-16571949 | None:intergenic | 60.0% |
| ! | TTAGGCCCATTGGTTGGCGG+TGG | + | chr4.2:16571987-16572006 | None:intergenic | 60.0% |
| CATGTACCGCCACCACCTGC+AGG | - | chr4.2:16571921-16571940 | MS.gene028228:CDS | 65.0% | |
| CCAGCAGCAGCAGCAGTTGC+CGG | + | chr4.2:16571543-16571562 | None:intergenic | 65.0% | |
| GCCGTTTCCCTTCCTGCGCT+TGG | + | chr4.2:16572432-16572451 | None:intergenic | 65.0% | |
| CCGGCAACTGCTGCTGCTGC+TGG | - | chr4.2:16571540-16571559 | MS.gene028228:CDS | 70.0% | |
| GCAGCAGCAGCAGTTGCCGG+TGG | + | chr4.2:16571540-16571559 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 16570145 | 16573315 | 16570145 | ID=MS.gene028228 |
| chr4.2 | mRNA | 16570145 | 16573315 | 16570145 | ID=MS.gene028228.t1;Parent=MS.gene028228 |
| chr4.2 | exon | 16573190 | 16573315 | 16573190 | ID=MS.gene028228.t1.exon1;Parent=MS.gene028228.t1 |
| chr4.2 | CDS | 16573190 | 16573315 | 16573190 | ID=cds.MS.gene028228.t1;Parent=MS.gene028228.t1 |
| chr4.2 | exon | 16572081 | 16572191 | 16572081 | ID=MS.gene028228.t1.exon2;Parent=MS.gene028228.t1 |
| chr4.2 | CDS | 16572081 | 16572191 | 16572081 | ID=cds.MS.gene028228.t1;Parent=MS.gene028228.t1 |
| chr4.2 | exon | 16570145 | 16571947 | 16570145 | ID=MS.gene028228.t1.exon3;Parent=MS.gene028228.t1 |
| chr4.2 | CDS | 16570145 | 16571947 | 16570145 | ID=cds.MS.gene028228.t1;Parent=MS.gene028228.t1 |
| Gene Sequence |
| Protein sequence |
