Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene028248.t1 | XP_013457399.1 | 98.6 | 486 | 7 | 0 | 1 | 486 | 1 | 486 | 4.50E-268 | 933.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene028248.t1 | Q8GX46 | 36.1 | 502 | 214 | 11 | 11 | 482 | 1 | 425 | 1.8e-68 | 261.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene028248.t1 | G8A1V6 | 98.6 | 486 | 7 | 0 | 1 | 486 | 1 | 486 | 3.2e-268 | 933.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene028248.t1 | TF | bHLH |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene028248.t1 | MTR_4g094762 | 98.765 | 486 | 6 | 0 | 1 | 486 | 1 | 486 | 0.0 | 997 |
| MS.gene028248.t1 | MTR_1g056700 | 85.714 | 49 | 7 | 0 | 272 | 320 | 11 | 59 | 1.71e-21 | 89.0 |
| MS.gene028248.t1 | MTR_3g498695 | 28.643 | 199 | 129 | 5 | 278 | 470 | 285 | 476 | 3.07e-16 | 81.6 |
| MS.gene028248.t1 | MTR_3g498695 | 28.500 | 200 | 129 | 6 | 278 | 470 | 285 | 477 | 7.66e-15 | 77.0 |
| MS.gene028248.t1 | MTR_0194s0050 | 24.500 | 200 | 134 | 3 | 293 | 477 | 186 | 383 | 2.30e-12 | 68.9 |
| MS.gene028248.t1 | MTR_1g072320 | 30.872 | 149 | 85 | 4 | 293 | 433 | 471 | 609 | 4.24e-12 | 68.9 |
| MS.gene028248.t1 | MTR_8g024790 | 28.049 | 164 | 83 | 5 | 293 | 443 | 292 | 433 | 6.47e-12 | 67.8 |
| MS.gene028248.t1 | MTR_7g083900 | 24.468 | 188 | 129 | 4 | 291 | 470 | 285 | 467 | 2.39e-11 | 66.2 |
| MS.gene028248.t1 | MTR_7g083900 | 24.339 | 189 | 129 | 4 | 291 | 470 | 285 | 468 | 3.02e-11 | 65.9 |
| MS.gene028248.t1 | MTR_8g067280 | 31.579 | 171 | 110 | 3 | 293 | 460 | 463 | 629 | 3.71e-11 | 65.9 |
| MS.gene028248.t1 | MTR_5g030430 | 29.630 | 189 | 117 | 5 | 293 | 471 | 494 | 676 | 9.12e-11 | 64.7 |
| MS.gene028248.t1 | MTR_8g024770 | 30.968 | 155 | 93 | 6 | 293 | 443 | 280 | 424 | 9.85e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene028248.t1 | AT2G31210 | 36.187 | 514 | 195 | 12 | 11 | 481 | 1 | 424 | 4.95e-90 | 281 |
| MS.gene028248.t1 | AT2G31220 | 36.257 | 513 | 209 | 15 | 16 | 481 | 2 | 443 | 2.97e-82 | 262 |
| MS.gene028248.t1 | AT2G31220 | 36.257 | 513 | 209 | 15 | 16 | 481 | 13 | 454 | 3.98e-82 | 262 |
| MS.gene028248.t1 | AT1G06170 | 37.423 | 489 | 201 | 17 | 11 | 480 | 6 | 408 | 5.05e-82 | 260 |
| MS.gene028248.t1 | AT1G06170 | 37.423 | 489 | 201 | 17 | 11 | 480 | 6 | 408 | 5.05e-82 | 260 |
| MS.gene028248.t1 | AT2G31215 | 50.704 | 71 | 35 | 0 | 284 | 354 | 15 | 85 | 1.02e-14 | 71.2 |
| MS.gene028248.t1 | AT3G26744 | 26.738 | 187 | 126 | 4 | 291 | 471 | 306 | 487 | 2.88e-12 | 69.3 |
| MS.gene028248.t1 | AT3G26744 | 26.738 | 187 | 126 | 4 | 291 | 471 | 306 | 487 | 2.88e-12 | 69.3 |
| MS.gene028248.t1 | AT3G26744 | 26.738 | 187 | 126 | 4 | 291 | 471 | 306 | 487 | 2.88e-12 | 69.3 |
| MS.gene028248.t1 | AT3G26744 | 27.976 | 168 | 111 | 3 | 291 | 453 | 306 | 468 | 4.11e-12 | 68.6 |
| MS.gene028248.t1 | AT1G32640 | 29.592 | 196 | 102 | 7 | 261 | 437 | 410 | 588 | 4.14e-12 | 68.9 |
| MS.gene028248.t1 | AT1G12860 | 27.439 | 164 | 113 | 3 | 291 | 453 | 266 | 424 | 6.35e-12 | 67.8 |
| MS.gene028248.t1 | AT3G24140 | 25.000 | 204 | 130 | 5 | 293 | 477 | 199 | 398 | 6.67e-12 | 67.8 |
| MS.gene028248.t1 | AT3G24140 | 25.000 | 204 | 130 | 5 | 293 | 477 | 199 | 398 | 8.16e-12 | 67.4 |
| MS.gene028248.t1 | AT5G46760 | 34.459 | 148 | 85 | 4 | 293 | 437 | 416 | 554 | 1.92e-11 | 66.6 |
| MS.gene028248.t1 | AT1G12860 | 29.054 | 148 | 99 | 3 | 291 | 437 | 266 | 408 | 2.08e-11 | 66.2 |
Find 131 sgRNAs with CRISPR-Local
Find 157 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTCATTGAATTATGAAAAT+TGG | 0.123720 | 4.2:-16801409 | None:intergenic |
| GATGGAGGGAGATGGGGATA+TGG | 0.225091 | 4.2:+16801620 | MS.gene028248:CDS |
| GACATCAACCTCACTGTCTT+TGG | 0.255758 | 4.2:-16802276 | None:intergenic |
| GTTGTTTGTGTTGTTATCAT+TGG | 0.285682 | 4.2:-16800923 | None:intergenic |
| CAGATAGTTGGTGGTGTTCT+TGG | 0.287318 | 4.2:-16801203 | None:intergenic |
| GGACCCTAGTGTTCAGGATA+TGG | 0.288747 | 4.2:+16801167 | MS.gene028248:CDS |
| GCTGTTTGTGTCCAAGGTTT+TGG | 0.309859 | 4.2:+16802358 | MS.gene028248:CDS |
| GTCATTGAATTATGAAAATT+GGG | 0.338556 | 4.2:-16801408 | None:intergenic |
| AGTGAATGAACTGAAATTAT+TGG | 0.342875 | 4.2:+16802121 | MS.gene028248:CDS |
| AGGGATTGTAGCTTTGGTTA+TGG | 0.348857 | 4.2:-16801260 | None:intergenic |
| TTGGAACTTCATCATGTTGC+AGG | 0.351895 | 4.2:+16802392 | MS.gene028248:CDS |
| CAAAACATGCATGAACAAAA+TGG | 0.364773 | 4.2:+16800856 | MS.gene028248:CDS |
| AGCTGTAACATAAAGCCTTT+TGG | 0.367904 | 4.2:+16802209 | MS.gene028248:CDS |
| TTGTTTACCTTGGTGGGACT+TGG | 0.369352 | 4.2:-16801777 | None:intergenic |
| CTCCACAGCCTCCAGCTCTC+AGG | 0.376170 | 4.2:+16801517 | MS.gene028248:CDS |
| ATTGAACAACAACAAAATCT+TGG | 0.381255 | 4.2:+16801072 | MS.gene028248:CDS |
| ATGGAGGGAGATGGGGATAT+GGG | 0.387229 | 4.2:+16801621 | MS.gene028248:CDS |
| GTGATGAGATGGAGGGAGAT+GGG | 0.388952 | 4.2:+16801613 | MS.gene028248:CDS |
| TGGGAGTGCTGGAATTCAAT+AGG | 0.389828 | 4.2:+16801640 | MS.gene028248:CDS |
| ATGGTTATCCATGTTGTTGT+AGG | 0.394415 | 4.2:-16801112 | None:intergenic |
| TGGTCGAGGGATTGTAGCTT+TGG | 0.400036 | 4.2:-16801266 | None:intergenic |
| GATGTTTCCACTTATACAAA+TGG | 0.405425 | 4.2:+16801027 | MS.gene028248:CDS |
| CAACAGGGTGATTGATGTTA+TGG | 0.412367 | 4.2:+16802595 | MS.gene028248:CDS |
| TTTCTTGGAGACCTTCCAAT+AGG | 0.414923 | 4.2:+16801432 | MS.gene028248:CDS |
| CAAAATCTTGGTTTGAACAT+AGG | 0.414981 | 4.2:+16801084 | MS.gene028248:CDS |
| TTTCTCAGTTGCAAAATGTT+TGG | 0.419556 | 4.2:-16801703 | None:intergenic |
| TTGTTTGTGTTGTTATCATT+GGG | 0.420602 | 4.2:-16800922 | None:intergenic |
| GATATTGTTGTTCAGATAGT+TGG | 0.421325 | 4.2:-16801215 | None:intergenic |
| TTGCTTGCTGTTTGTGTCCA+AGG | 0.421896 | 4.2:+16802352 | MS.gene028248:CDS |
| AAAATCTTGGTTTGAACATA+GGG | 0.427616 | 4.2:+16801085 | MS.gene028248:CDS |
| TCCCTGAGAGCTGGAGGCTG+TGG | 0.430359 | 4.2:-16801519 | None:intergenic |
| ACACCTTCATCCATTGTGTT+GGG | 0.431032 | 4.2:-16800889 | None:intergenic |
| CAACAACATGGATAACCATT+TGG | 0.435263 | 4.2:+16801116 | MS.gene028248:CDS |
| GAGTTGGGACCCTAGTGTTC+AGG | 0.436779 | 4.2:+16801161 | MS.gene028248:CDS |
| GGTGATGAGATGGAGGGAGA+TGG | 0.442415 | 4.2:+16801612 | MS.gene028248:CDS |
| ATGCAAGTGCTATAGCCAAC+AGG | 0.446313 | 4.2:+16802579 | MS.gene028248:CDS |
| GAGGTTCTTATACTTCCATC+TGG | 0.453935 | 4.2:-16802236 | None:intergenic |
| GTGTTGTCTGATGATCCTAT+TGG | 0.454473 | 4.2:-16801447 | None:intergenic |
| AGTGAATCCATTTGTATAAG+TGG | 0.457197 | 4.2:-16801034 | None:intergenic |
| AGATGGGGATATGGGAGTGC+TGG | 0.457752 | 4.2:+16801629 | MS.gene028248:CDS |
| ATGCCAACCAACTCGAGAAA+TGG | 0.461019 | 4.2:+16801573 | MS.gene028248:CDS |
| AAGAGAACCATTTCTCGAGT+TGG | 0.464839 | 4.2:-16801580 | None:intergenic |
| ATAGCAATGAGTTCAGGTTC+AGG | 0.465445 | 4.2:+16800826 | None:intergenic |
| AACACCTTCATCCATTGTGT+TGG | 0.467861 | 4.2:-16800890 | None:intergenic |
| CAAAGAAGAGAGCAATTGAA+TGG | 0.475530 | 4.2:+16801726 | MS.gene028248:CDS |
| TAACATCATCATCGATAATC+CGG | 0.477440 | 4.2:-16802298 | None:intergenic |
| GATACACTTCTTGTACCAAA+TGG | 0.479122 | 4.2:-16801131 | None:intergenic |
| AATTATTGGTGGAGAAGAAA+AGG | 0.486241 | 4.2:+16802135 | MS.gene028248:CDS |
| TTATTGTTGTTTACCTTGGT+GGG | 0.486440 | 4.2:-16801783 | None:intergenic |
| TGGAGAAGAAAAGGCATGGA+AGG | 0.486907 | 4.2:+16802144 | MS.gene028248:CDS |
| CAAACTGTTTCAGAGGAAGA+AGG | 0.489618 | 4.2:+16802325 | MS.gene028248:CDS |
| AGTTGGGTTTGTCATGCAAA+TGG | 0.490408 | 4.2:-16801376 | None:intergenic |
| TTTATTGTTGTTTACCTTGG+TGG | 0.495717 | 4.2:-16801784 | None:intergenic |
| GCTTCTGTTGGCAAAGGAAG+AGG | 0.497466 | 4.2:+16801669 | MS.gene028248:CDS |
| TGGTGGAGGTGATGAGATGG+AGG | 0.498303 | 4.2:+16801605 | MS.gene028248:CDS |
| CTTCCATCTGGATCACCAAA+AGG | 0.498543 | 4.2:-16802224 | None:intergenic |
| GGGAGTGCTGGAATTCAATA+GGG | 0.499086 | 4.2:+16801641 | MS.gene028248:CDS |
| GGAAGGTTCAAAGGATATAG+AGG | 0.514568 | 4.2:-16801495 | None:intergenic |
| TTGAGAAGGTTAAGGACATC+CGG | 0.515412 | 4.2:-16801312 | None:intergenic |
| AGACAAATAGCAATGAGTTC+AGG | 0.516206 | 4.2:+16800820 | None:intergenic |
| CTGAGAGCTGGAGGCTGTGG+AGG | 0.518825 | 4.2:-16801516 | None:intergenic |
| TGTTTACCTTGGTGGGACTT+GGG | 0.518905 | 4.2:-16801776 | None:intergenic |
| AGTGTATCAGAACTCGAGTT+GGG | 0.519237 | 4.2:+16801146 | MS.gene028248:CDS |
| AGCATCTAGGTAAGTTGAGA+AGG | 0.519406 | 4.2:-16801326 | None:intergenic |
| GACTACAGCCTACTTATATG+TGG | 0.520235 | 4.2:-16802641 | None:intergenic |
| TCCACAGCCTCCAGCTCTCA+GGG | 0.522645 | 4.2:+16801518 | MS.gene028248:CDS |
| AGACCCTCATTACCCTTCAC+CGG | 0.523695 | 4.2:+16801293 | MS.gene028248:CDS |
| TAGTTTCTTGTTCAATAGCA+AGG | 0.524699 | 4.2:+16802436 | MS.gene028248:CDS |
| TGATGAGATGGAGGGAGATG+GGG | 0.524823 | 4.2:+16801614 | MS.gene028248:CDS |
| GAGCTGGAGGCTGTGGAGGA+AGG | 0.524927 | 4.2:-16801512 | None:intergenic |
| AATAGGGTCACTGCTTCTGT+TGG | 0.528001 | 4.2:+16801657 | MS.gene028248:CDS |
| TGAAACAATTCCCTGAGAGC+TGG | 0.529234 | 4.2:-16801528 | None:intergenic |
| GAATTTCAAGCCTTCTGTAG+AGG | 0.532912 | 4.2:+16800963 | MS.gene028248:CDS |
| CTGAAGTTCATCCAAAACCT+TGG | 0.538751 | 4.2:-16802369 | None:intergenic |
| ATTGTTGTTCAGATAGTTGG+TGG | 0.547721 | 4.2:-16801212 | None:intergenic |
| GGCTGTGGAGGAAGGTTCAA+AGG | 0.549237 | 4.2:-16801504 | None:intergenic |
| TAGGTAAGTTGAGAAGGTTA+AGG | 0.550958 | 4.2:-16801320 | None:intergenic |
| ATGAGGGTCTAGAATGGTCG+AGG | 0.552417 | 4.2:-16801280 | None:intergenic |
| CAGGTCTTCCACATATAAGT+AGG | 0.553461 | 4.2:+16802633 | MS.gene028248:CDS |
| ACATCCGGTGAAGGGTAATG+AGG | 0.553656 | 4.2:-16801297 | None:intergenic |
| GATCCCAACACAATGGATGA+AGG | 0.553830 | 4.2:+16800886 | MS.gene028248:CDS |
| GAACCATTTCTCGAGTTGGT+TGG | 0.554382 | 4.2:-16801576 | None:intergenic |
| TTTGTCATGCAAATGGTGGA+TGG | 0.555450 | 4.2:-16801369 | None:intergenic |
| TGGAAAGTACAAAATCTTGA+GGG | 0.560743 | 4.2:+16801746 | MS.gene028248:CDS |
| GGAGAAGAAAAGGCATGGAA+GGG | 0.561748 | 4.2:+16802145 | MS.gene028248:CDS |
| AGGTTAAGGACATCCGGTGA+AGG | 0.563045 | 4.2:-16801306 | None:intergenic |
| TAATCCATATCCTGAACACT+AGG | 0.565325 | 4.2:-16801171 | None:intergenic |
| AAGACAGTGAGGTTGATGTC+CGG | 0.567804 | 4.2:+16802279 | MS.gene028248:CDS |
| ATGGAAAGTACAAAATCTTG+AGG | 0.570741 | 4.2:+16801745 | MS.gene028248:CDS |
| CATGTTGCAGGTGGACATGT+TGG | 0.572375 | 4.2:+16802404 | MS.gene028248:CDS |
| TTACAATCAAACTGTTTCAG+AGG | 0.573969 | 4.2:+16802318 | MS.gene028248:CDS |
| ATTGAATTATGAAAATTGGG+TGG | 0.575295 | 4.2:-16801405 | None:intergenic |
| AGCAAAGATGAAGAGCATCT+AGG | 0.580041 | 4.2:-16801339 | None:intergenic |
| GTCACTGCTTCTGTTGGCAA+AGG | 0.580434 | 4.2:+16801663 | MS.gene028248:CDS |
| ACTGATAGAGCATCAGTGGT+TGG | 0.582304 | 4.2:+16802062 | MS.gene028248:CDS |
| AACAATTCCCTGAGAGCTGG+AGG | 0.583698 | 4.2:-16801525 | None:intergenic |
| TTGGTGGAGAAGAAAAGGCA+TGG | 0.589624 | 4.2:+16802140 | MS.gene028248:CDS |
| ATGGACACACAATATGCAGC+AGG | 0.590966 | 4.2:+16802614 | MS.gene028248:CDS |
| AGGGTAATGAGGGTCTAGAA+TGG | 0.594794 | 4.2:-16801286 | None:intergenic |
| GAATGAACTGAAATTATTGG+TGG | 0.601922 | 4.2:+16802124 | MS.gene028248:CDS |
| AAGTGTATCAGAACTCGAGT+TGG | 0.603471 | 4.2:+16801145 | MS.gene028248:CDS |
| TTGTTCAATGTCTACTGATG+AGG | 0.603690 | 4.2:-16801058 | None:intergenic |
| GGATTTCCTCTGCAGCCATG+AGG | 0.604351 | 4.2:-16802255 | None:intergenic |
| TATAAGTGGAAACATCATCA+AGG | 0.606570 | 4.2:-16801020 | None:intergenic |
| GGTTAAGGACATCCGGTGAA+GGG | 0.607008 | 4.2:-16801305 | None:intergenic |
| TAAGAACCTCATGGCTGCAG+AGG | 0.607611 | 4.2:+16802249 | MS.gene028248:CDS |
| GAACTTCATCATGTTGCAGG+TGG | 0.610349 | 4.2:+16802395 | MS.gene028248:CDS |
| CATAACATCAATCACCCTGT+TGG | 0.611438 | 4.2:-16802594 | None:intergenic |
| CATCCGGTGAAGGGTAATGA+GGG | 0.612093 | 4.2:-16801296 | None:intergenic |
| AGACAACACAAGCGGATCAT+CGG | 0.616516 | 4.2:+16801461 | MS.gene028248:CDS |
| TGGGTTTGTCATGCAAATGG+TGG | 0.620066 | 4.2:-16801373 | None:intergenic |
| GCAGACTGATAGAGCATCAG+TGG | 0.620695 | 4.2:+16802058 | MS.gene028248:intron |
| TGTTCAATGTCTACTGATGA+GGG | 0.621545 | 4.2:-16801057 | None:intergenic |
| AAGGCTTGAAATTCTCGTCA+AGG | 0.622448 | 4.2:-16800954 | None:intergenic |
| TAAGGTAGTTCCTCTACAGA+AGG | 0.625311 | 4.2:-16800973 | None:intergenic |
| TGTCTGATGATCCTATTGGA+AGG | 0.634988 | 4.2:-16801443 | None:intergenic |
| GGTGGAGGTGATGAGATGGA+GGG | 0.640062 | 4.2:+16801606 | MS.gene028248:CDS |
| TGCAAGTGCTATAGCCAACA+GGG | 0.647996 | 4.2:+16802580 | MS.gene028248:CDS |
| TCTGTTGGCAAAGGAAGAGG+AGG | 0.650064 | 4.2:+16801672 | MS.gene028248:CDS |
| TCACTGATGCAGGTAAATGA+AGG | 0.652033 | 4.2:+16802545 | MS.gene028248:intron |
| ATGGAAGTATAAGAACCTCA+TGG | 0.653640 | 4.2:+16802240 | MS.gene028248:CDS |
| AATCCATATCCTGAACACTA+GGG | 0.654503 | 4.2:-16801170 | None:intergenic |
| ACAATATCAACAATTTATCG+AGG | 0.665388 | 4.2:+16801230 | MS.gene028248:CDS |
| TTGTTTCAATCTCTACCTCG+AGG | 0.671336 | 4.2:+16801543 | MS.gene028248:CDS |
| GGATCATCAGACAACACAAG+CGG | 0.678009 | 4.2:+16801453 | MS.gene028248:CDS |
| AGGGAATACCTACAACAACA+TGG | 0.679432 | 4.2:+16801104 | MS.gene028248:CDS |
| TTGCTTTGATCCCAACACAA+TGG | 0.687353 | 4.2:+16800879 | MS.gene028248:CDS |
| TCTCATCCCAAGTCCCACCA+AGG | 0.687512 | 4.2:+16801770 | MS.gene028248:CDS |
| TGAGGGTCTAGAATGGTCGA+GGG | 0.709529 | 4.2:-16801279 | None:intergenic |
| GAGGAAATCCAAAGACAGTG+AGG | 0.714492 | 4.2:+16802268 | MS.gene028248:CDS |
| GTTGGCATGCTATAGCCTCG+AGG | 0.732010 | 4.2:-16801558 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATAAAAATTACATTTTTAG+TGG | + | chr4.2:16801965-16801984 | MS.gene028248:intron | 10.0% |
| !! | TAGAATTATTACATTTGATT+TGG | + | chr4.2:16802498-16802517 | MS.gene028248:intron | 15.0% |
| !! | TGGTTATATATTAAACTATA+AGG | + | chr4.2:16802518-16802537 | MS.gene028248:intron | 15.0% |
| !! | AGTCATTGAATTATGAAAAT+TGG | - | chr4.2:16801412-16801431 | None:intergenic | 20.0% |
| !! | GATTCAAAACATATATCAAT+TGG | - | chr4.2:16801879-16801898 | None:intergenic | 20.0% |
| !! | GTCATTGAATTATGAAAATT+GGG | - | chr4.2:16801411-16801430 | None:intergenic | 20.0% |
| !! | TTCATGGATAAAATTATACA+TGG | - | chr4.2:16801830-16801849 | None:intergenic | 20.0% |
| !! | TTGAATCTTGAATTATATTG+AGG | + | chr4.2:16801892-16801911 | MS.gene028248:intron | 20.0% |
| ! | ACAATATCAACAATTTATCG+AGG | + | chr4.2:16801230-16801249 | MS.gene028248:CDS | 25.0% |
| ! | AGTGAATGAACTGAAATTAT+TGG | + | chr4.2:16802121-16802140 | MS.gene028248:CDS | 25.0% |
| ! | ATTGAACAACAACAAAATCT+TGG | + | chr4.2:16801072-16801091 | MS.gene028248:CDS | 25.0% |
| ! | ATTGAATTATGAAAATTGGG+TGG | - | chr4.2:16801408-16801427 | None:intergenic | 25.0% |
| ! | CTATTTGATACCATGATTAA+CGG | + | chr4.2:16802019-16802038 | MS.gene028248:intron | 25.0% |
| ! | TATTTGATACCATGATTAAC+GGG | + | chr4.2:16802020-16802039 | MS.gene028248:intron | 25.0% |
| !! | AAAATCTTGGTTTGAACATA+GGG | + | chr4.2:16801085-16801104 | MS.gene028248:CDS | 25.0% |
| !! | CATAATTCAATGACTTTTCT+TGG | + | chr4.2:16801417-16801436 | MS.gene028248:CDS | 25.0% |
| !! | TTGTTTGTGTTGTTATCATT+GGG | - | chr4.2:16800925-16800944 | None:intergenic | 25.0% |
| !!! | ATGTTTATTGTTGTTTACCT+TGG | - | chr4.2:16801790-16801809 | None:intergenic | 25.0% |
| AATTATTGGTGGAGAAGAAA+AGG | + | chr4.2:16802135-16802154 | MS.gene028248:CDS | 30.0% | |
| AGTGAATCCATTTGTATAAG+TGG | - | chr4.2:16801037-16801056 | None:intergenic | 30.0% | |
| CAAAACATGCATGAACAAAA+TGG | + | chr4.2:16800856-16800875 | MS.gene028248:CDS | 30.0% | |
| GAATGAACTGAAATTATTGG+TGG | + | chr4.2:16802124-16802143 | MS.gene028248:CDS | 30.0% | |
| GATGTTTCCACTTATACAAA+TGG | + | chr4.2:16801027-16801046 | MS.gene028248:CDS | 30.0% | |
| TAACATCATCATCGATAATC+CGG | - | chr4.2:16802301-16802320 | None:intergenic | 30.0% | |
| TAGTTTCTTGTTCAATAGCA+AGG | + | chr4.2:16802436-16802455 | MS.gene028248:CDS | 30.0% | |
| TATAAGTGGAAACATCATCA+AGG | - | chr4.2:16801023-16801042 | None:intergenic | 30.0% | |
| TCAAATAGAGATTCAAATCG+TGG | - | chr4.2:16802007-16802026 | None:intergenic | 30.0% | |
| TTACAATCAAACTGTTTCAG+AGG | + | chr4.2:16802318-16802337 | MS.gene028248:CDS | 30.0% | |
| TTTCTCAGTTGCAAAATGTT+TGG | - | chr4.2:16801706-16801725 | None:intergenic | 30.0% | |
| ! | ATGGAAAGTACAAAATCTTG+AGG | + | chr4.2:16801745-16801764 | MS.gene028248:CDS | 30.0% |
| ! | CAAAATCTTGGTTTGAACAT+AGG | + | chr4.2:16801084-16801103 | MS.gene028248:CDS | 30.0% |
| ! | GATATTGTTGTTCAGATAGT+TGG | - | chr4.2:16801218-16801237 | None:intergenic | 30.0% |
| ! | GTTGTTTGTGTTGTTATCAT+TGG | - | chr4.2:16800926-16800945 | None:intergenic | 30.0% |
| ! | TGGAAAGTACAAAATCTTGA+GGG | + | chr4.2:16801746-16801765 | MS.gene028248:CDS | 30.0% |
| !! | GAATTTTGATGATTGTGGTA+AGG | - | chr4.2:16800994-16801013 | None:intergenic | 30.0% |
| !! | GTTGTGAATTTTGATGATTG+TGG | - | chr4.2:16800999-16801018 | None:intergenic | 30.0% |
| !! | TTATTGTTGTTTACCTTGGT+GGG | - | chr4.2:16801786-16801805 | None:intergenic | 30.0% |
| !! | TTTATTGTTGTTTACCTTGG+TGG | - | chr4.2:16801787-16801806 | None:intergenic | 30.0% |
| AATCCATATCCTGAACACTA+GGG | - | chr4.2:16801173-16801192 | None:intergenic | 35.0% | |
| ATCAATTGGCAACAGAAAAG+TGG | - | chr4.2:16801865-16801884 | None:intergenic | 35.0% | |
| ATGGTTATCCATGTTGTTGT+AGG | - | chr4.2:16801115-16801134 | None:intergenic | 35.0% | |
| CAAAGAAGAGAGCAATTGAA+TGG | + | chr4.2:16801726-16801745 | MS.gene028248:CDS | 35.0% | |
| CAACAACATGGATAACCATT+TGG | + | chr4.2:16801116-16801135 | MS.gene028248:CDS | 35.0% | |
| GATACACTTCTTGTACCAAA+TGG | - | chr4.2:16801134-16801153 | None:intergenic | 35.0% | |
| TAATCCATATCCTGAACACT+AGG | - | chr4.2:16801174-16801193 | None:intergenic | 35.0% | |
| TAGAGATTCAAATCGTGGAA+CGG | - | chr4.2:16802002-16802021 | None:intergenic | 35.0% | |
| TGTTCAATGTCTACTGATGA+GGG | - | chr4.2:16801060-16801079 | None:intergenic | 35.0% | |
| TTCTTGTTCAATAGCAAGGT+TGG | + | chr4.2:16802440-16802459 | MS.gene028248:intron | 35.0% | |
| TTGTTCAATGTCTACTGATG+AGG | - | chr4.2:16801061-16801080 | None:intergenic | 35.0% | |
| ! | AGAAATGGTTCTCTTTTTGG+TGG | + | chr4.2:16801588-16801607 | MS.gene028248:CDS | 35.0% |
| ! | AGCTGTAACATAAAGCCTTT+TGG | + | chr4.2:16802209-16802228 | MS.gene028248:CDS | 35.0% |
| ! | ATGGAAGTATAAGAACCTCA+TGG | + | chr4.2:16802240-16802259 | MS.gene028248:CDS | 35.0% |
| ! | ATTGTTGTTCAGATAGTTGG+TGG | - | chr4.2:16801215-16801234 | None:intergenic | 35.0% |
| ! | TAGGTAAGTTGAGAAGGTTA+AGG | - | chr4.2:16801323-16801342 | None:intergenic | 35.0% |
| ! | TCGAGAAATGGTTCTCTTTT+TGG | + | chr4.2:16801585-16801604 | MS.gene028248:CDS | 35.0% |
| !! | AAATTGGGTGGATTTTGAGT+TGG | - | chr4.2:16801396-16801415 | None:intergenic | 35.0% |
| !!! | AATTGGGTGGATTTTGAGTT+GGG | - | chr4.2:16801395-16801414 | None:intergenic | 35.0% |
| AACACCTTCATCCATTGTGT+TGG | - | chr4.2:16800893-16800912 | None:intergenic | 40.0% | |
| AAGAGAACCATTTCTCGAGT+TGG | - | chr4.2:16801583-16801602 | None:intergenic | 40.0% | |
| AAGGCTTGAAATTCTCGTCA+AGG | - | chr4.2:16800957-16800976 | None:intergenic | 40.0% | |
| AAGTGTATCAGAACTCGAGT+TGG | + | chr4.2:16801145-16801164 | MS.gene028248:CDS | 40.0% | |
| ACACCTTCATCCATTGTGTT+GGG | - | chr4.2:16800892-16800911 | None:intergenic | 40.0% | |
| AGGGAATACCTACAACAACA+TGG | + | chr4.2:16801104-16801123 | MS.gene028248:CDS | 40.0% | |
| AGTGTATCAGAACTCGAGTT+GGG | + | chr4.2:16801146-16801165 | MS.gene028248:CDS | 40.0% | |
| AGTTGGGTTTGTCATGCAAA+TGG | - | chr4.2:16801379-16801398 | None:intergenic | 40.0% | |
| CAAACTGTTTCAGAGGAAGA+AGG | + | chr4.2:16802325-16802344 | MS.gene028248:CDS | 40.0% | |
| CAACAGGGTGATTGATGTTA+TGG | + | chr4.2:16802595-16802614 | MS.gene028248:CDS | 40.0% | |
| CAGGTCTTCCACATATAAGT+AGG | + | chr4.2:16802633-16802652 | MS.gene028248:CDS | 40.0% | |
| CATAACATCAATCACCCTGT+TGG | - | chr4.2:16802597-16802616 | None:intergenic | 40.0% | |
| CTGAAGTTCATCCAAAACCT+TGG | - | chr4.2:16802372-16802391 | None:intergenic | 40.0% | |
| GAATTTCAAGCCTTCTGTAG+AGG | + | chr4.2:16800963-16800982 | MS.gene028248:CDS | 40.0% | |
| GAGGTTCTTATACTTCCATC+TGG | - | chr4.2:16802239-16802258 | None:intergenic | 40.0% | |
| GGAAGGTTCAAAGGATATAG+AGG | - | chr4.2:16801498-16801517 | None:intergenic | 40.0% | |
| GTGTTGTCTGATGATCCTAT+TGG | - | chr4.2:16801450-16801469 | None:intergenic | 40.0% | |
| TAAGGTAGTTCCTCTACAGA+AGG | - | chr4.2:16800976-16800995 | None:intergenic | 40.0% | |
| TCACTGATGCAGGTAAATGA+AGG | + | chr4.2:16802545-16802564 | MS.gene028248:intron | 40.0% | |
| TGTCTGATGATCCTATTGGA+AGG | - | chr4.2:16801446-16801465 | None:intergenic | 40.0% | |
| TTGAGAAGGTTAAGGACATC+CGG | - | chr4.2:16801315-16801334 | None:intergenic | 40.0% | |
| TTGCTTTGATCCCAACACAA+TGG | + | chr4.2:16800879-16800898 | MS.gene028248:CDS | 40.0% | |
| TTGGAACTTCATCATGTTGC+AGG | + | chr4.2:16802392-16802411 | MS.gene028248:CDS | 40.0% | |
| TTGTTTCAATCTCTACCTCG+AGG | + | chr4.2:16801543-16801562 | MS.gene028248:CDS | 40.0% | |
| TTTCTTGGAGACCTTCCAAT+AGG | + | chr4.2:16801432-16801451 | MS.gene028248:CDS | 40.0% | |
| ! | AGCATCTAGGTAAGTTGAGA+AGG | - | chr4.2:16801329-16801348 | None:intergenic | 40.0% |
| ! | TTTGTCATGCAAATGGTGGA+TGG | - | chr4.2:16801372-16801391 | None:intergenic | 40.0% |
| !! | AATGGTTCTCTTTTTGGTGG+AGG | + | chr4.2:16801591-16801610 | MS.gene028248:CDS | 40.0% |
| !! | AGCAAAGATGAAGAGCATCT+AGG | - | chr4.2:16801342-16801361 | None:intergenic | 40.0% |
| !! | AGGGATTGTAGCTTTGGTTA+TGG | - | chr4.2:16801263-16801282 | None:intergenic | 40.0% |
| !!! | GGTTTTGGATGAACTTCAGT+TGG | + | chr4.2:16802373-16802392 | MS.gene028248:CDS | 40.0% |
| AATAGGGTCACTGCTTCTGT+TGG | + | chr4.2:16801657-16801676 | MS.gene028248:CDS | 45.0% | |
| AGACAACACAAGCGGATCAT+CGG | + | chr4.2:16801461-16801480 | MS.gene028248:CDS | 45.0% | |
| AGGGTAATGAGGGTCTAGAA+TGG | - | chr4.2:16801289-16801308 | None:intergenic | 45.0% | |
| ATGCAAGTGCTATAGCCAAC+AGG | + | chr4.2:16802579-16802598 | MS.gene028248:CDS | 45.0% | |
| ATGCCAACCAACTCGAGAAA+TGG | + | chr4.2:16801573-16801592 | MS.gene028248:CDS | 45.0% | |
| ATGGACACACAATATGCAGC+AGG | + | chr4.2:16802614-16802633 | MS.gene028248:CDS | 45.0% | |
| ATTGGCAACAGAAAAGTGGC+TGG | - | chr4.2:16801861-16801880 | None:intergenic | 45.0% | |
| CCAAAACTGCCCGTTAATCA+TGG | - | chr4.2:16802032-16802051 | None:intergenic | 45.0% | |
| CTTCCATCTGGATCACCAAA+AGG | - | chr4.2:16802227-16802246 | None:intergenic | 45.0% | |
| GAACTTCATCATGTTGCAGG+TGG | + | chr4.2:16802395-16802414 | MS.gene028248:CDS | 45.0% | |
| GACATCAACCTCACTGTCTT+TGG | - | chr4.2:16802279-16802298 | None:intergenic | 45.0% | |
| GAGGAAATCCAAAGACAGTG+AGG | + | chr4.2:16802268-16802287 | MS.gene028248:CDS | 45.0% | |
| GATCCCAACACAATGGATGA+AGG | + | chr4.2:16800886-16800905 | MS.gene028248:CDS | 45.0% | |
| GGATCATCAGACAACACAAG+CGG | + | chr4.2:16801453-16801472 | MS.gene028248:CDS | 45.0% | |
| TGAAACAATTCCCTGAGAGC+TGG | - | chr4.2:16801531-16801550 | None:intergenic | 45.0% | |
| TGCAAGTGCTATAGCCAACA+GGG | + | chr4.2:16802580-16802599 | MS.gene028248:CDS | 45.0% | |
| TGGGTTTGTCATGCAAATGG+TGG | - | chr4.2:16801376-16801395 | None:intergenic | 45.0% | |
| TGTTTACCTTGGTGGGACTT+GGG | - | chr4.2:16801779-16801798 | None:intergenic | 45.0% | |
| TTGGTGGAGAAGAAAAGGCA+TGG | + | chr4.2:16802140-16802159 | MS.gene028248:CDS | 45.0% | |
| TTGTTTACCTTGGTGGGACT+TGG | - | chr4.2:16801780-16801799 | None:intergenic | 45.0% | |
| ! | ACTGATAGAGCATCAGTGGT+TGG | + | chr4.2:16802062-16802081 | MS.gene028248:CDS | 45.0% |
| ! | ATAAGGTGTGTCACTGATGC+AGG | + | chr4.2:16802535-16802554 | MS.gene028248:intron | 45.0% |
| ! | GCTGTTTGTGTCCAAGGTTT+TGG | + | chr4.2:16802358-16802377 | MS.gene028248:CDS | 45.0% |
| ! | GGAGAAGAAAAGGCATGGAA+GGG | + | chr4.2:16802145-16802164 | MS.gene028248:CDS | 45.0% |
| ! | TGGAGAAGAAAAGGCATGGA+AGG | + | chr4.2:16802144-16802163 | MS.gene028248:CDS | 45.0% |
| ! | TTTTGGTGGAGGTGATGAGA+TGG | + | chr4.2:16801602-16801621 | MS.gene028248:CDS | 45.0% |
| !! | AAGACAGTGAGGTTGATGTC+CGG | + | chr4.2:16802279-16802298 | MS.gene028248:CDS | 45.0% |
| !! | AAGCCTTTTGGTGATCCAGA+TGG | + | chr4.2:16802221-16802240 | MS.gene028248:CDS | 45.0% |
| !! | CAGATAGTTGGTGGTGTTCT+TGG | - | chr4.2:16801206-16801225 | None:intergenic | 45.0% |
| !! | CCATGATTAACGGGCAGTTT+TGG | + | chr4.2:16802029-16802048 | MS.gene028248:intron | 45.0% |
| !! | GAACCATTTCTCGAGTTGGT+TGG | - | chr4.2:16801579-16801598 | None:intergenic | 45.0% |
| !! | GGGAGTGCTGGAATTCAATA+GGG | + | chr4.2:16801641-16801660 | MS.gene028248:CDS | 45.0% |
| !! | TGGGAGTGCTGGAATTCAAT+AGG | + | chr4.2:16801640-16801659 | MS.gene028248:CDS | 45.0% |
| !! | TTGCTTGCTGTTTGTGTCCA+AGG | + | chr4.2:16802352-16802371 | MS.gene028248:CDS | 45.0% |
| AACAATTCCCTGAGAGCTGG+AGG | - | chr4.2:16801528-16801547 | None:intergenic | 50.0% | |
| ACATCCGGTGAAGGGTAATG+AGG | - | chr4.2:16801300-16801319 | None:intergenic | 50.0% | |
| AGACCCTCATTACCCTTCAC+CGG | + | chr4.2:16801293-16801312 | MS.gene028248:CDS | 50.0% | |
| AGGTTAAGGACATCCGGTGA+AGG | - | chr4.2:16801309-16801328 | None:intergenic | 50.0% | |
| ATGGAGGGAGATGGGGATAT+GGG | + | chr4.2:16801621-16801640 | MS.gene028248:CDS | 50.0% | |
| CATCCGGTGAAGGGTAATGA+GGG | - | chr4.2:16801299-16801318 | None:intergenic | 50.0% | |
| CATGTTGCAGGTGGACATGT+TGG | + | chr4.2:16802404-16802423 | MS.gene028248:CDS | 50.0% | |
| GCTTCTGTTGGCAAAGGAAG+AGG | + | chr4.2:16801669-16801688 | MS.gene028248:CDS | 50.0% | |
| GGACCCTAGTGTTCAGGATA+TGG | + | chr4.2:16801167-16801186 | MS.gene028248:CDS | 50.0% | |
| GGTTAAGGACATCCGGTGAA+GGG | - | chr4.2:16801308-16801327 | None:intergenic | 50.0% | |
| GTCACTGCTTCTGTTGGCAA+AGG | + | chr4.2:16801663-16801682 | MS.gene028248:CDS | 50.0% | |
| GTGATGAGATGGAGGGAGAT+GGG | + | chr4.2:16801613-16801632 | MS.gene028248:CDS | 50.0% | |
| GTGGCTGGTGACTCAATTCA+TGG | - | chr4.2:16801846-16801865 | None:intergenic | 50.0% | |
| TAAGAACCTCATGGCTGCAG+AGG | + | chr4.2:16802249-16802268 | MS.gene028248:CDS | 50.0% | |
| TCTGTTGGCAAAGGAAGAGG+AGG | + | chr4.2:16801672-16801691 | MS.gene028248:CDS | 50.0% | |
| TGATGAGATGGAGGGAGATG+GGG | + | chr4.2:16801614-16801633 | MS.gene028248:CDS | 50.0% | |
| TGGTCGAGGGATTGTAGCTT+TGG | - | chr4.2:16801269-16801288 | None:intergenic | 50.0% | |
| ! | ATGAGGGTCTAGAATGGTCG+AGG | - | chr4.2:16801283-16801302 | None:intergenic | 50.0% |
| ! | GCAGACTGATAGAGCATCAG+TGG | + | chr4.2:16802058-16802077 | MS.gene028248:intron | 50.0% |
| ! | TGAGGGTCTAGAATGGTCGA+GGG | - | chr4.2:16801282-16801301 | None:intergenic | 50.0% |
| GAGTTGGGACCCTAGTGTTC+AGG | + | chr4.2:16801161-16801180 | MS.gene028248:CDS | 55.0% | |
| GATGGAGGGAGATGGGGATA+TGG | + | chr4.2:16801620-16801639 | MS.gene028248:CDS | 55.0% | |
| GGATTTCCTCTGCAGCCATG+AGG | - | chr4.2:16802258-16802277 | None:intergenic | 55.0% | |
| GGCTGTGGAGGAAGGTTCAA+AGG | - | chr4.2:16801507-16801526 | None:intergenic | 55.0% | |
| GGTGATGAGATGGAGGGAGA+TGG | + | chr4.2:16801612-16801631 | MS.gene028248:CDS | 55.0% | |
| GGTGGAGGTGATGAGATGGA+GGG | + | chr4.2:16801606-16801625 | MS.gene028248:CDS | 55.0% | |
| GTTGGCATGCTATAGCCTCG+AGG | - | chr4.2:16801561-16801580 | None:intergenic | 55.0% | |
| TCTCATCCCAAGTCCCACCA+AGG | + | chr4.2:16801770-16801789 | MS.gene028248:CDS | 55.0% | |
| TGGTGGAGGTGATGAGATGG+AGG | + | chr4.2:16801605-16801624 | MS.gene028248:CDS | 55.0% | |
| ! | AGATGGGGATATGGGAGTGC+TGG | + | chr4.2:16801629-16801648 | MS.gene028248:CDS | 55.0% |
| TCCACAGCCTCCAGCTCTCA+GGG | + | chr4.2:16801518-16801537 | MS.gene028248:CDS | 60.0% | |
| CTCCACAGCCTCCAGCTCTC+AGG | + | chr4.2:16801517-16801536 | MS.gene028248:CDS | 65.0% | |
| CTGAGAGCTGGAGGCTGTGG+AGG | - | chr4.2:16801519-16801538 | None:intergenic | 65.0% | |
| GAGCTGGAGGCTGTGGAGGA+AGG | - | chr4.2:16801515-16801534 | None:intergenic | 65.0% | |
| TCCCTGAGAGCTGGAGGCTG+TGG | - | chr4.2:16801522-16801541 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 16800832 | 16802661 | 16800832 | ID=MS.gene028248 |
| chr4.2 | mRNA | 16800832 | 16802661 | 16800832 | ID=MS.gene028248.t1;Parent=MS.gene028248 |
| chr4.2 | exon | 16800832 | 16801791 | 16800832 | ID=MS.gene028248.t1.exon1;Parent=MS.gene028248.t1 |
| chr4.2 | CDS | 16800832 | 16801791 | 16800832 | ID=cds.MS.gene028248.t1;Parent=MS.gene028248.t1 |
| chr4.2 | exon | 16802062 | 16802457 | 16802062 | ID=MS.gene028248.t1.exon2;Parent=MS.gene028248.t1 |
| chr4.2 | CDS | 16802062 | 16802457 | 16802062 | ID=cds.MS.gene028248.t1;Parent=MS.gene028248.t1 |
| chr4.2 | exon | 16802557 | 16802661 | 16802557 | ID=MS.gene028248.t1.exon3;Parent=MS.gene028248.t1 |
| chr4.2 | CDS | 16802557 | 16802661 | 16802557 | ID=cds.MS.gene028248.t1;Parent=MS.gene028248.t1 |
| Gene Sequence |
| Protein sequence |
