AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene028312

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene028312.t1 MTR_4g094638 88.125 160 19 0 1 160 8 167 2.71e-86 250
MS.gene028312.t1 MTR_4g094632 67.949 156 44 3 1 156 8 157 4.11e-66 199
MS.gene028312.t1 MTR_1g047550 36.646 161 88 5 1 151 8 164 5.34e-25 95.1
MS.gene028312.t1 MTR_8g079502 38.415 164 81 7 1 151 8 164 1.01e-24 94.4
MS.gene028312.t1 MTR_4g131030 33.523 176 90 4 1 151 8 181 2.60e-24 94.4
MS.gene028312.t1 MTR_8g051580 35.404 161 84 5 4 151 11 164 1.13e-22 89.0
MS.gene028312.t1 MTR_3g080940 32.716 162 92 4 1 148 15 173 5.79e-22 87.8
MS.gene028312.t1 MTR_1g054265 36.810 163 85 5 1 151 8 164 1.11e-21 86.3
MS.gene028312.t1 MTR_1g063160 33.750 160 94 3 1 151 8 164 4.27e-21 85.1
MS.gene028312.t1 MTR_7g028448 38.060 134 74 2 8 137 25 153 6.30e-21 84.3
MS.gene028312.t1 MTR_4g036915 38.060 134 74 2 8 137 25 153 6.30e-21 84.3
MS.gene028312.t1 MTR_8g046350 33.758 157 88 5 3 151 10 158 1.42e-20 83.2
MS.gene028312.t1 MTR_3g030770 36.552 145 79 4 1 133 15 158 1.01e-18 79.7
MS.gene028312.t1 MTR_1g108510 42.000 100 57 1 1 100 15 113 2.32e-18 79.0
MS.gene028312.t1 MTR_8g043650 32.544 169 101 4 1 157 15 182 4.26e-18 78.6
MS.gene028312.t1 MTR_2g009890 32.653 147 79 3 4 134 11 153 9.65e-18 78.2
MS.gene028312.t1 MTR_2g093190 32.768 177 92 5 1 151 15 190 1.30e-17 77.0
MS.gene028312.t1 MTR_1g108580 41.000 100 58 1 1 100 15 113 2.27e-17 76.3
MS.gene028312.t1 MTR_1g106070 39.252 107 60 2 4 106 18 123 2.68e-17 75.1
MS.gene028312.t1 MTR_5g053390 53.846 65 30 0 1 65 15 79 5.64e-17 75.5
MS.gene028312.t1 MTR_3g052870 40.000 110 61 2 1 106 15 123 5.69e-17 75.1
MS.gene028312.t1 MTR_1g105920 40.000 110 61 2 1 106 15 123 1.66e-16 74.3
MS.gene028312.t1 MTR_2g085250 53.968 63 29 0 1 63 15 77 3.76e-16 73.2
MS.gene028312.t1 MTR_2g085280 53.968 63 29 0 1 63 15 77 3.84e-16 73.2
MS.gene028312.t1 MTR_3g052920 39.252 107 60 2 4 106 18 123 4.57e-16 72.8
MS.gene028312.t1 MTR_2g030740 55.556 63 28 0 1 63 15 77 5.41e-16 72.8
MS.gene028312.t1 MTR_1g105910 30.994 171 101 3 1 157 15 182 5.52e-16 72.8
MS.gene028312.t1 MTR_7g075870 31.298 131 84 1 1 131 8 132 7.78e-16 72.0
MS.gene028312.t1 MTR_1g077360 49.231 65 33 0 1 65 15 79 7.84e-16 72.4
MS.gene028312.t1 MTR_5g045560 35.294 119 56 2 1 111 15 120 8.61e-16 72.4
MS.gene028312.t1 MTR_1g075600 50.769 65 32 0 1 65 15 79 1.10e-15 72.0
MS.gene028312.t1 MTR_1g012570 53.968 63 29 0 1 63 15 77 1.17e-15 72.0
MS.gene028312.t1 MTR_5g066180 30.508 177 86 5 4 151 11 179 2.15e-15 70.9
MS.gene028312.t1 MTR_1g105905 37.963 108 62 2 4 107 1 107 2.63e-15 70.5
MS.gene028312.t1 MTR_0121s0100 40.426 94 55 1 1 94 15 107 3.98e-15 68.2
MS.gene028312.t1 MTR_5g055100 49.231 65 33 0 1 65 15 79 1.23e-14 69.3
MS.gene028312.t1 MTR_7g075870 31.061 132 84 2 1 131 8 133 1.37e-14 68.6
MS.gene028312.t1 MTR_1g101970 46.774 62 33 0 1 62 8 69 4.55e-14 66.6
MS.gene028312.t1 MTR_3g005530 32.203 118 63 2 4 104 11 128 4.93e-14 67.4
MS.gene028312.t1 MTR_6g081890 60.714 84 19 2 56 139 80 149 5.96e-14 65.9
MS.gene028312.t1 MTR_4g109830 39.080 87 47 2 4 89 11 92 1.25e-13 66.2
MS.gene028312.t1 MTR_3g030780 47.619 63 33 0 1 63 15 77 1.55e-13 63.9
MS.gene028312.t1 MTR_4g102530 45.161 62 34 0 1 62 8 69 1.85e-13 65.5
MS.gene028312.t1 MTR_3g067875 55.357 56 25 0 4 59 1 56 2.42e-13 62.0
MS.gene028312.t1 MTR_2g105290 30.464 151 95 4 4 145 21 170 2.61e-13 64.3
MS.gene028312.t1 MTR_8g086290 41.791 67 39 0 8 74 25 91 3.79e-13 63.9
MS.gene028312.t1 MTR_4g093970 31.298 131 80 3 4 131 37 160 5.23e-13 64.7
MS.gene028312.t1 MTR_8g033220 43.548 62 35 0 1 62 8 69 5.88e-13 64.3
MS.gene028312.t1 MTR_8g033220 43.548 62 35 0 1 62 8 69 6.02e-13 64.3
MS.gene028312.t1 MTR_5g031000 45.763 59 32 0 4 62 11 69 6.10e-13 64.7
MS.gene028312.t1 MTR_0121s0080 34.783 115 71 2 1 115 15 125 6.39e-13 64.3
MS.gene028312.t1 MTR_5g031000 45.763 59 32 0 4 62 11 69 7.02e-13 64.3
MS.gene028312.t1 MTR_4g127140 44.444 63 35 0 8 70 25 87 8.16e-13 63.5
MS.gene028312.t1 MTR_5g032150 31.008 129 81 3 4 131 11 132 1.23e-12 63.5
MS.gene028312.t1 MTR_5g032520 31.008 129 81 3 4 131 11 132 1.46e-12 63.5
MS.gene028312.t1 MTR_3g452380 29.688 128 84 2 4 131 26 147 1.74e-12 63.5
MS.gene028312.t1 MTR_3g109930 29.286 140 90 2 10 140 17 156 1.86e-12 62.4
MS.gene028312.t1 MTR_1g053070 31.008 129 87 1 4 132 11 137 2.48e-12 63.2
MS.gene028312.t1 MTR_3g113030 30.709 127 65 4 4 123 11 121 4.76e-12 62.0
MS.gene028312.t1 MTR_5g021270 29.600 125 79 3 1 123 8 125 6.74e-12 61.6
MS.gene028312.t1 MTR_5g021270 28.030 132 86 3 1 130 8 132 7.02e-12 61.6
MS.gene028312.t1 MTR_0003s0590 44.068 59 33 0 4 62 11 69 9.20e-12 61.6
MS.gene028312.t1 MTR_3g102570 45.161 62 33 1 4 64 11 72 1.80e-11 61.2
MS.gene028312.t1 MTR_7g062350 47.541 61 32 0 3 63 29 89 2.64e-11 60.1
MS.gene028312.t1 MTR_8g033270 44.068 59 33 0 4 62 11 69 6.10e-11 59.3
MS.gene028312.t1 MTR_7g016630 32.432 74 49 1 4 76 11 84 6.54e-11 59.3
MS.gene028312.t1 MTR_4g051538 43.636 55 31 0 11 65 25 79 8.43e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene028312.t1 AT2G34440 36.527 167 86 3 1 149 8 172 3.73e-29 105
MS.gene028312.t1 AT2G24840 35.135 148 80 4 4 137 72 217 3.01e-20 84.7
MS.gene028312.t1 AT3G66656 52.703 74 35 0 1 74 8 81 5.01e-19 79.7
MS.gene028312.t1 AT1G28460 44.037 109 58 3 9 117 22 127 4.41e-18 77.4
MS.gene028312.t1 AT2G45660 29.231 130 86 1 1 130 8 131 3.30e-17 74.3
MS.gene028312.t1 AT1G29962 41.071 112 60 4 10 118 23 131 5.34e-17 74.3
MS.gene028312.t1 AT2G45660 29.008 131 87 1 1 131 8 132 9.70e-17 74.3
MS.gene028312.t1 AT4G09960 34.746 118 60 2 4 104 12 129 4.26e-16 73.2
MS.gene028312.t1 AT4G09960 34.746 118 60 2 4 104 11 128 4.47e-16 72.8
MS.gene028312.t1 AT4G09960 34.746 118 60 2 4 104 11 128 4.90e-16 72.4
MS.gene028312.t1 AT4G09960 34.746 118 60 2 4 104 21 138 6.03e-16 72.8
MS.gene028312.t1 AT5G60440 41.228 114 54 3 4 108 16 125 8.75e-16 73.2
MS.gene028312.t1 AT4G09960 34.746 118 60 2 4 104 106 223 9.48e-16 73.2
MS.gene028312.t1 AT4G09960 34.746 118 60 2 4 104 37 154 9.63e-16 72.4
MS.gene028312.t1 AT4G24540 34.400 125 74 3 4 127 11 128 1.39e-15 71.6
MS.gene028312.t1 AT4G22950 35.577 104 60 2 1 104 8 104 1.61e-15 70.5
MS.gene028312.t1 AT1G01530 38.938 113 58 3 1 108 11 117 2.75e-15 71.2
MS.gene028312.t1 AT3G57230 34.821 112 56 2 4 99 11 121 4.81e-15 68.6
MS.gene028312.t1 AT3G57230 45.763 59 32 0 4 62 11 69 1.06e-14 69.3
MS.gene028312.t1 AT3G57230 45.763 59 32 0 4 62 11 69 1.06e-14 69.3
MS.gene028312.t1 AT4G22950 35.577 104 60 2 1 104 8 104 1.07e-14 68.9
MS.gene028312.t1 AT4G22950 35.577 104 60 2 1 104 8 104 1.07e-14 68.9
MS.gene028312.t1 AT1G65360 35.644 101 60 2 12 111 24 120 1.63e-14 68.6
MS.gene028312.t1 AT5G62165 27.820 133 86 2 1 131 8 132 3.49e-14 66.2
MS.gene028312.t1 AT5G62165 27.820 133 86 2 1 131 8 132 3.49e-14 66.2
MS.gene028312.t1 AT5G62165 27.820 133 86 2 1 131 8 132 3.49e-14 66.2
MS.gene028312.t1 AT5G62165 27.820 133 86 2 1 131 8 132 3.49e-14 66.2
MS.gene028312.t1 AT5G62165 27.820 133 86 2 1 131 8 132 3.49e-14 66.2
MS.gene028312.t1 AT1G28450 40.541 111 60 4 10 117 23 130 3.61e-14 67.0
MS.gene028312.t1 AT5G62165 41.935 62 36 0 1 62 8 69 5.30e-14 65.9
MS.gene028312.t1 AT5G62165 41.935 62 36 0 1 62 8 69 5.30e-14 65.9
MS.gene028312.t1 AT5G62165 41.935 62 36 0 1 62 8 69 5.30e-14 65.9
MS.gene028312.t1 AT5G62165 36.986 73 46 0 1 73 8 80 1.35e-13 63.5
MS.gene028312.t1 AT5G51860 32.468 154 83 5 4 136 11 164 1.43e-13 65.9
MS.gene028312.t1 AT5G51860 33.113 151 80 5 4 133 11 161 1.47e-13 65.9
MS.gene028312.t1 AT5G62165 41.935 62 36 0 1 62 8 69 1.58e-13 65.5
MS.gene028312.t1 AT5G62165 41.935 62 36 0 1 62 8 69 1.58e-13 65.5
MS.gene028312.t1 AT5G62165 41.935 62 36 0 1 62 8 69 1.68e-13 65.9
MS.gene028312.t1 AT5G62165 41.935 62 36 0 1 62 8 69 1.68e-13 65.9
MS.gene028312.t1 AT5G62165 41.935 62 36 0 1 62 8 69 1.68e-13 65.9
MS.gene028312.t1 AT2G22540 47.458 59 31 0 4 62 11 69 1.70e-13 66.2
MS.gene028312.t1 AT2G22540 47.458 59 31 0 4 62 11 69 1.70e-13 66.2
MS.gene028312.t1 AT2G14210 46.667 60 31 1 4 62 11 70 1.84e-13 65.9
MS.gene028312.t1 AT5G51870 44.068 59 33 0 4 62 11 69 1.89e-13 65.5
MS.gene028312.t1 AT5G51870 44.068 59 33 0 4 62 11 69 1.98e-13 64.7
MS.gene028312.t1 AT2G14210 46.667 60 31 1 4 62 11 70 2.11e-13 65.9
MS.gene028312.t1 AT5G51870 44.068 59 33 0 4 62 34 92 3.12e-13 64.7
MS.gene028312.t1 AT5G51870 44.068 59 33 0 4 62 11 69 3.53e-13 65.1
MS.gene028312.t1 AT4G37940 29.268 123 80 3 1 123 8 123 4.18e-13 64.7
MS.gene028312.t1 AT1G69120 37.209 86 48 2 4 88 11 91 4.26e-13 65.1
MS.gene028312.t1 AT4G37940 29.268 123 80 3 1 123 8 123 4.30e-13 64.7
MS.gene028312.t1 AT5G51870 44.068 59 33 0 4 62 21 79 4.31e-13 65.1
MS.gene028312.t1 AT4G37940 29.268 123 80 2 1 123 8 123 6.60e-13 63.5
MS.gene028312.t1 AT1G69120 37.209 86 48 2 4 88 11 91 6.89e-13 64.7
MS.gene028312.t1 AT5G13790 33.929 112 64 2 4 105 11 122 1.02e-12 64.3
MS.gene028312.t1 AT1G72350 51.852 54 24 1 10 63 58 109 2.48e-12 62.8
MS.gene028312.t1 AT5G13790 33.043 115 64 2 4 105 11 125 2.76e-12 63.2
MS.gene028312.t1 AT3G54340 45.902 61 31 1 4 62 11 71 3.61e-12 62.4
MS.gene028312.t1 AT2G45650 43.548 62 35 0 1 62 8 69 4.00e-12 62.4
MS.gene028312.t1 AT4G36590 35.714 98 59 1 1 94 13 110 6.98e-12 62.0
MS.gene028312.t1 AT1G47760 28.302 159 88 4 1 148 8 151 8.10e-12 60.8
MS.gene028312.t1 AT4G11880 34.286 105 61 3 1 104 8 105 8.93e-12 60.5
MS.gene028312.t1 AT4G11880 34.286 105 61 3 1 104 8 105 8.93e-12 60.5
MS.gene028312.t1 AT3G57390 29.252 147 96 3 4 145 11 154 1.08e-11 61.2
MS.gene028312.t1 AT4G11880 34.286 105 61 3 1 104 8 105 1.35e-11 60.8
MS.gene028312.t1 AT4G11880 34.286 105 61 3 1 104 8 105 1.35e-11 60.8
MS.gene028312.t1 AT5G23260 42.857 63 34 1 4 64 27 89 1.42e-11 61.2
MS.gene028312.t1 AT1G26310 29.323 133 77 5 4 126 11 136 1.44e-11 61.2
MS.gene028312.t1 AT2G42830 26.866 134 80 2 4 131 26 147 1.44e-11 60.8
MS.gene028312.t1 AT5G23260 42.857 63 34 1 4 64 11 73 1.45e-11 60.8
MS.gene028312.t1 AT3G57390 29.252 147 96 3 4 145 11 154 1.47e-11 60.8
MS.gene028312.t1 AT5G23260 42.857 63 34 1 4 64 27 89 1.55e-11 60.8
MS.gene028312.t1 AT2G42830 26.866 134 80 2 4 131 26 147 1.63e-11 60.8
MS.gene028312.t1 AT2G22630 26.562 128 87 2 4 131 11 131 1.72e-11 60.5
MS.gene028312.t1 AT2G22630 26.562 128 87 2 4 131 11 131 1.72e-11 60.5
MS.gene028312.t1 AT3G58780 28.682 129 84 2 4 131 26 147 1.76e-11 60.8
MS.gene028312.t1 AT5G23260 42.857 63 34 1 4 64 11 73 1.79e-11 60.5
MS.gene028312.t1 AT3G58780 28.682 129 84 2 4 131 32 153 1.86e-11 60.8
MS.gene028312.t1 AT3G58780 28.682 129 84 2 4 131 26 147 1.96e-11 60.8
MS.gene028312.t1 AT3G61120 45.763 59 32 0 4 62 11 69 4.37e-11 59.7
MS.gene028312.t1 AT1G71692 33.645 107 55 4 4 94 11 117 5.94e-11 58.9
MS.gene028312.t1 AT5G60910 43.333 60 33 1 4 62 11 70 7.39e-11 58.9

Find 34 sgRNAs with CRISPR-Local

Find 36 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAACCACAGTTTGGAAATT+TGG 0.168789 4.2:+17570539 None:intergenic
TTGTTCATCATGTTGATATT+TGG 0.210857 4.2:+17570446 None:intergenic
CTCCACCTTCTTCAACTCTT+TGG 0.225832 4.2:+17570406 None:intergenic
AGTGGTAATCCATTTGCTTT+TGG 0.324426 4.2:-17570566 MS.gene028312:CDS
TTAAGATCAGCAAGTGCAAT+AGG 0.366907 4.2:+17570362 None:intergenic
GGTATTGTTCAACCACAGTT+TGG 0.372955 4.2:+17570531 None:intergenic
AAAGCTAGAGTTGGTATAGT+TGG 0.376951 4.2:-17570599 MS.gene028312:CDS
TTGATTTGATTTGTAAAAGA+AGG 0.403884 4.2:-17570235 MS.gene028312:CDS
AGATGGAACTTGTGAAGAAC+AGG 0.420903 4.2:-17570697 MS.gene028312:CDS
TAAGATCAGCAAGTGCAATA+GGG 0.429366 4.2:+17570363 None:intergenic
ATCAAATCAATGATGCGTAT+AGG 0.457795 4.2:+17570248 None:intergenic
CTGATTCTTGTCCTTCATGA+AGG 0.460431 4.2:+17570510 None:intergenic
TTTGGAGTACCAAAAGCAAA+TGG 0.462718 4.2:+17570557 None:intergenic
ATTCTTTGTAAAGCTAGAGT+TGG 0.512424 4.2:-17570608 MS.gene028312:CDS
GAAGGACAAGAATCAGAAGT+TGG 0.522377 4.2:-17570503 MS.gene028312:CDS
TTGTGAAGAACAGGAGTGCT+AGG 0.529512 4.2:-17570688 MS.gene028312:CDS
AAGCAAATGGATTACCACTT+GGG 0.543871 4.2:+17570570 None:intergenic
AAGGTGGAGGAAGTTAAGAA+AGG 0.546878 4.2:-17570392 MS.gene028312:CDS
AAAAGAACTTCTAAAAGTGA+AGG 0.559771 4.2:-17570336 MS.gene028312:CDS
AAAGCAAATGGATTACCACT+TGG 0.562709 4.2:+17570569 None:intergenic
TTTAACCAAAGAGTTGAAGA+AGG 0.565193 4.2:-17570411 MS.gene028312:CDS
AATCAGAAGTTGGATCATCA+AGG 0.570301 4.2:-17570493 MS.gene028312:CDS
AAGATCAGCAAGTGCAATAG+GGG 0.575405 4.2:+17570364 None:intergenic
TACTCCAAATTTCCAAACTG+TGG 0.585807 4.2:-17570543 MS.gene028312:CDS
CAAAGAGTTGAAGAAGGTGG+AGG 0.587290 4.2:-17570405 MS.gene028312:CDS
GTTGAACAATACCTTCATGA+AGG 0.592753 4.2:-17570521 MS.gene028312:CDS
ATGATGAACAAAGGATTGAG+TGG 0.601358 4.2:-17570434 MS.gene028312:CDS
ATAGTTGGATTTACCCCAAG+TGG 0.610668 4.2:-17570584 MS.gene028312:CDS
AACCAAAGAGTTGAAGAAGG+TGG 0.610693 4.2:-17570408 MS.gene028312:CDS
AGCAAATGGATTACCACTTG+GGG 0.611363 4.2:+17570571 None:intergenic
AATATCAACATGATGAACAA+AGG 0.612466 4.2:-17570443 MS.gene028312:CDS
GCTTCGTTGAAAGAGCTCCA+TGG 0.636204 4.2:-17570314 MS.gene028312:CDS
ATGCTGCCTCGATGTCACCA+TGG 0.676966 4.2:+17570297 None:intergenic
AGAGCTCCATGGTGACATCG+AGG 0.706026 4.2:-17570303 MS.gene028312:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTGATTTGATTTGTAAAAGA+AGG - chr4.2:17570692-17570711 MS.gene028312:CDS 20.0%
! AATATCAACATGATGAACAA+AGG - chr4.2:17570484-17570503 MS.gene028312:CDS 25.0%
! TTGTTCATCATGTTGATATT+TGG + chr4.2:17570484-17570503 None:intergenic 25.0%
!! AAAAGAACTTCTAAAAGTGA+AGG - chr4.2:17570591-17570610 MS.gene028312:CDS 25.0%
!! TTGATATTTGGATTTTCAGA+GGG + chr4.2:17570472-17570491 None:intergenic 25.0%
ATCAAATCAATGATGCGTAT+AGG + chr4.2:17570682-17570701 None:intergenic 30.0%
ATTCTTTGTAAAGCTAGAGT+TGG - chr4.2:17570319-17570338 MS.gene028312:CDS 30.0%
TTTAACCAAAGAGTTGAAGA+AGG - chr4.2:17570516-17570535 MS.gene028312:CDS 30.0%
! ACGTTTTCAAAAAGAAAGAG+TGG - chr4.2:17570268-17570287 MS.gene028312:CDS 30.0%
! GTTGATATTTGGATTTTCAG+AGG + chr4.2:17570473-17570492 None:intergenic 30.0%
AATCAGAAGTTGGATCATCA+AGG - chr4.2:17570434-17570453 MS.gene028312:CDS 35.0%
ATGATGAACAAAGGATTGAG+TGG - chr4.2:17570493-17570512 MS.gene028312:CDS 35.0%
GTTGAACAATACCTTCATGA+AGG - chr4.2:17570406-17570425 MS.gene028312:CDS 35.0%
TAAGATCAGCAAGTGCAATA+GGG + chr4.2:17570567-17570586 None:intergenic 35.0%
TACTCCAAATTTCCAAACTG+TGG - chr4.2:17570384-17570403 MS.gene028312:CDS 35.0%
TCAACCACAGTTTGGAAATT+TGG + chr4.2:17570391-17570410 None:intergenic 35.0%
TTAAGATCAGCAAGTGCAAT+AGG + chr4.2:17570568-17570587 None:intergenic 35.0%
! AGTGGTAATCCATTTGCTTT+TGG - chr4.2:17570361-17570380 MS.gene028312:CDS 35.0%
! TTTGGAGTACCAAAAGCAAA+TGG + chr4.2:17570373-17570392 None:intergenic 35.0%
!! AAAGCAAATGGATTACCACT+TGG + chr4.2:17570361-17570380 None:intergenic 35.0%
!! AAAGCTAGAGTTGGTATAGT+TGG - chr4.2:17570328-17570347 MS.gene028312:CDS 35.0%
!! AAGCAAATGGATTACCACTT+GGG + chr4.2:17570360-17570379 None:intergenic 35.0%
AACCAAAGAGTTGAAGAAGG+TGG - chr4.2:17570519-17570538 MS.gene028312:CDS 40.0%
AAGATCAGCAAGTGCAATAG+GGG + chr4.2:17570566-17570585 None:intergenic 40.0%
AAGGTGGAGGAAGTTAAGAA+AGG - chr4.2:17570535-17570554 MS.gene028312:CDS 40.0%
ATAGTTGGATTTACCCCAAG+TGG - chr4.2:17570343-17570362 MS.gene028312:CDS 40.0%
CTGATTCTTGTCCTTCATGA+AGG + chr4.2:17570420-17570439 None:intergenic 40.0%
GAAGGACAAGAATCAGAAGT+TGG - chr4.2:17570424-17570443 MS.gene028312:CDS 40.0%
GGTATTGTTCAACCACAGTT+TGG + chr4.2:17570399-17570418 None:intergenic 40.0%
!! AGCAAATGGATTACCACTTG+GGG + chr4.2:17570359-17570378 None:intergenic 40.0%
CAAAGAGTTGAAGAAGGTGG+AGG - chr4.2:17570522-17570541 MS.gene028312:CDS 45.0%
CTCCACCTTCTTCAACTCTT+TGG + chr4.2:17570524-17570543 None:intergenic 45.0%
!! TTGTGAAGAACAGGAGTGCT+AGG - chr4.2:17570239-17570258 MS.gene028312:CDS 45.0%
GCTTCGTTGAAAGAGCTCCA+TGG - chr4.2:17570613-17570632 MS.gene028312:CDS 50.0%
AGAGCTCCATGGTGACATCG+AGG - chr4.2:17570624-17570643 MS.gene028312:CDS 55.0%
ATGCTGCCTCGATGTCACCA+TGG + chr4.2:17570633-17570652 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 17570232 17570717 17570232 ID=MS.gene028312
chr4.2 mRNA 17570232 17570717 17570232 ID=MS.gene028312.t1;Parent=MS.gene028312
chr4.2 exon 17570232 17570717 17570232 ID=MS.gene028312.t1.exon1;Parent=MS.gene028312.t1
chr4.2 CDS 17570232 17570717 17570232 ID=cds.MS.gene028312.t1;Parent=MS.gene028312.t1
Gene Sequence

>MS.gene028312

ATGGAACTTGTGAAGAACAGGAGTGCTAGGTATGTCACGTTTTCAAAAAGAAAGAGTGGTCTTTTTAAAAAAGCAAGTGAATTATCAATTCTTTGTAAAGCTAGAGTTGGTATAGTTGGATTTACCCCAAGTGGTAATCCATTTGCTTTTGGTACTCCAAATTTCCAAACTGTGGTTGAACAATACCTTCATGAAGGACAAGAATCAGAAGTTGGATCATCAAGGCAAATTGTTACACCCTCTGAAAATCCAAATATCAACATGATGAACAAAGGATTGAGTGGTTTAACCAAAGAGTTGAAGAAGGTGGAGGAAGTTAAGAAAGGTAAAGCCCCTATTGCACTTGCTGATCTTAACTTAAAAGAACTTCTAAAAGTGAAGGCTTCGTTGAAAGAGCTCCATGGTGACATCGAGGCAGCATCTTCTTTGCTTCTTCTTTCAAAGAAGCCTATACGCATCATTGATTTGATTTGTAAAAGAAGGTGA
Protein sequence

>MS.gene028312.t1

MELVKNRSARYVTFSKRKSGLFKKASELSILCKARVGIVGFTPSGNPFAFGTPNFQTVVEQYLHEGQESEVGSSRQIVTPSENPNINMMNKGLSGLTKELKKVEEVKKGKAPIALADLNLKELLKVKASLKELHGDIEAASSLLLLSKKPIRIIDLICKRR