AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene028327

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene028327.t1 MTR_4g094588 98.625 291 4 0 1 291 48 338 0.0 597
MS.gene028327.t1 MTR_5g091390 45.614 285 137 8 2 284 36 304 3.07e-50 168
MS.gene028327.t1 MTR_5g043880 51.852 189 76 5 107 291 100 277 3.29e-48 162
MS.gene028327.t1 MTR_1g086790 50.000 190 83 3 107 285 134 322 1.38e-47 162
MS.gene028327.t1 MTR_7g109800 50.556 180 79 6 107 284 121 292 3.12e-44 152
MS.gene028327.t1 MTR_2g033820 68.817 93 29 0 114 206 186 278 7.02e-42 148
MS.gene028327.t1 MTR_8g007270 62.921 89 33 0 99 187 122 210 6.07e-34 123
MS.gene028327.t1 MTR_5g042920 45.098 153 71 3 71 213 259 408 6.57e-34 128
MS.gene028327.t1 MTR_5g042920 60.000 60 23 1 131 190 151 209 7.35e-17 80.5
MS.gene028327.t1 MTR_7g079010 48.227 141 65 3 49 189 67 199 7.77e-33 120
MS.gene028327.t1 MTR_4g122530 43.750 176 72 5 118 291 195 345 1.32e-32 124
MS.gene028327.t1 MTR_3g095080 47.518 141 67 2 49 187 89 224 2.90e-32 119
MS.gene028327.t1 MTR_3g095080 47.518 141 67 2 49 187 65 200 3.09e-32 119
MS.gene028327.t1 MTR_3g104750 64.198 81 28 1 109 188 81 161 1.02e-31 115
MS.gene028327.t1 MTR_3g056100 55.140 107 47 1 98 204 225 330 6.47e-31 120
MS.gene028327.t1 MTR_3g056100 48.101 79 35 2 131 209 99 171 6.71e-16 77.8
MS.gene028327.t1 MTR_3g056100 55.140 107 47 1 98 204 238 343 6.54e-31 120
MS.gene028327.t1 MTR_3g056100 48.101 79 35 2 131 209 99 171 5.71e-16 78.2
MS.gene028327.t1 MTR_4g082580 45.255 137 69 1 56 192 209 339 9.34e-31 119
MS.gene028327.t1 MTR_4g082580 50.769 65 30 1 131 193 145 209 2.77e-14 72.8
MS.gene028327.t1 MTR_8g092140 68.919 74 22 1 115 187 143 216 1.20e-30 115
MS.gene028327.t1 MTR_3g056100 55.140 107 47 1 98 204 369 474 1.36e-30 120
MS.gene028327.t1 MTR_3g056100 48.101 79 35 2 131 209 243 315 8.22e-16 77.8
MS.gene028327.t1 MTR_3g056100 55.140 107 47 1 98 204 382 487 1.47e-30 120
MS.gene028327.t1 MTR_3g056100 48.101 79 35 2 131 209 243 315 7.37e-16 77.8
MS.gene028327.t1 MTR_8g092010 49.107 112 50 2 83 190 59 167 1.71e-30 113
MS.gene028327.t1 MTR_3g095040 47.619 105 42 1 117 221 104 195 3.62e-30 113
MS.gene028327.t1 MTR_1g015140 63.636 77 28 0 112 188 83 159 7.52e-30 111
MS.gene028327.t1 MTR_5g094430 60.494 81 32 0 112 192 211 291 8.12e-30 117
MS.gene028327.t1 MTR_5g094430 59.322 59 23 1 132 190 67 124 7.91e-16 77.4
MS.gene028327.t1 MTR_7g011820 46.094 128 61 1 65 192 352 471 8.74e-30 118
MS.gene028327.t1 MTR_7g011820 47.872 94 33 2 116 194 198 290 1.27e-16 80.1
MS.gene028327.t1 MTR_5g094430 60.494 81 32 0 112 192 233 313 9.91e-30 117
MS.gene028327.t1 MTR_5g094430 59.322 59 23 1 132 190 89 146 7.00e-16 77.8
MS.gene028327.t1 MTR_7g028415 66.197 71 24 0 119 189 81 151 1.01e-29 110
MS.gene028327.t1 MTR_7g028710 66.197 71 24 0 119 189 81 151 1.01e-29 110
MS.gene028327.t1 MTR_4g013260 62.195 82 31 0 109 190 314 395 1.09e-29 117
MS.gene028327.t1 MTR_4g013260 52.632 76 34 1 131 204 184 259 4.99e-19 87.0
MS.gene028327.t1 MTR_5g094430 60.494 81 32 0 112 192 345 425 2.11e-29 117
MS.gene028327.t1 MTR_5g094430 59.322 59 23 1 132 190 201 258 9.10e-16 77.8
MS.gene028327.t1 MTR_3g009470 64.103 78 28 0 115 192 479 556 2.93e-29 117
MS.gene028327.t1 MTR_3g009470 64.062 64 22 1 131 194 280 342 1.85e-19 88.6
MS.gene028327.t1 MTR_5g074400 42.568 148 71 2 51 198 353 486 5.37e-29 116
MS.gene028327.t1 MTR_5g074400 61.667 60 22 1 131 190 243 301 2.21e-16 79.3
MS.gene028327.t1 MTR_1g077780 53.659 82 38 0 112 193 43 124 8.17e-29 107
MS.gene028327.t1 MTR_7g071120 37.433 187 95 5 43 212 223 404 1.59e-28 114
MS.gene028327.t1 MTR_7g071120 56.522 69 29 1 126 194 161 228 2.80e-17 82.0
MS.gene028327.t1 MTR_3g031220 57.317 82 35 0 110 191 344 425 7.00e-27 109
MS.gene028327.t1 MTR_3g031220 40.179 112 61 3 114 224 185 291 1.11e-16 80.1
MS.gene028327.t1 MTR_7g080020 56.098 82 36 0 115 196 477 558 1.07e-26 110
MS.gene028327.t1 MTR_7g080020 54.762 84 33 2 111 194 264 342 1.37e-18 86.3
MS.gene028327.t1 MTR_3g053330 34.872 195 104 5 105 289 225 406 1.29e-26 108
MS.gene028327.t1 MTR_8g096730 50.588 85 42 0 108 192 47 131 2.06e-26 101
MS.gene028327.t1 MTR_7g100510 41.912 136 65 2 57 190 297 420 4.44e-26 107
MS.gene028327.t1 MTR_7g100510 55.882 68 29 1 132 199 190 256 7.55e-17 80.5
MS.gene028327.t1 MTR_7g080000 56.410 78 34 0 115 192 416 493 9.36e-26 107
MS.gene028327.t1 MTR_7g080000 51.190 84 36 2 111 194 218 296 3.20e-17 82.0
MS.gene028327.t1 MTR_7g062220 71.930 57 16 0 131 187 124 180 1.11e-23 98.6
MS.gene028327.t1 MTR_5g097490 48.598 107 53 1 99 203 220 326 1.69e-23 99.4
MS.gene028327.t1 MTR_5g097490 51.515 66 23 2 131 192 92 152 5.54e-13 68.9
MS.gene028327.t1 MTR_2g023930 45.652 92 49 1 100 190 274 365 1.72e-23 100
MS.gene028327.t1 MTR_7g110720 43.363 113 60 3 81 190 138 249 2.79e-23 98.6
MS.gene028327.t1 MTR_4g132430 44.565 92 50 1 100 190 96 187 3.10e-23 98.2
MS.gene028327.t1 MTR_7g110720 53.247 77 35 1 115 190 200 276 1.12e-22 97.4
MS.gene028327.t1 MTR_4g132430 44.565 92 50 1 100 190 230 321 1.21e-22 97.8
MS.gene028327.t1 MTR_2g105060 51.220 82 37 2 113 191 74 155 1.26e-22 94.4
MS.gene028327.t1 MTR_2g105060 51.220 82 37 2 113 191 149 230 2.05e-22 95.1
MS.gene028327.t1 MTR_1g009613 41.667 96 55 1 107 201 238 333 2.95e-22 95.1
MS.gene028327.t1 MTR_6g086555 41.129 124 49 4 117 217 192 314 3.17e-22 95.9
MS.gene028327.t1 MTR_2g045360 36.641 131 73 3 102 225 182 309 1.55e-21 94.0
MS.gene028327.t1 MTR_4g130900 42.991 107 59 1 91 195 319 425 2.41e-21 94.0
MS.gene028327.t1 MTR_2g088000 46.429 84 44 1 108 190 326 409 2.78e-21 94.0
MS.gene028327.t1 MTR_4g049760 39.837 123 72 2 91 211 250 372 7.45e-21 92.8
MS.gene028327.t1 MTR_7g009730 43.478 115 56 3 91 200 175 285 9.08e-21 92.4
MS.gene028327.t1 MTR_4g094412 47.436 78 40 1 115 191 218 295 1.78e-20 91.3
MS.gene028327.t1 MTR_4g094412 47.436 78 40 1 115 191 227 304 2.04e-20 91.3
MS.gene028327.t1 MTR_8g098945 50.617 81 38 2 130 209 128 207 2.14e-20 89.0
MS.gene028327.t1 MTR_5g016610 41.053 95 55 1 94 187 162 256 2.49e-20 88.6
MS.gene028327.t1 MTR_7g109600 60.317 63 24 1 132 193 54 116 4.67e-20 87.8
MS.gene028327.t1 MTR_4g107970 44.186 86 47 1 106 190 153 238 7.31e-20 89.7
MS.gene028327.t1 MTR_4g107970 48.052 77 39 1 115 190 239 315 7.57e-20 89.7
MS.gene028327.t1 MTR_4g049790 37.500 128 77 2 98 224 281 406 7.71e-20 89.7
MS.gene028327.t1 MTR_2g032030 43.878 98 52 2 97 191 231 328 1.18e-19 88.6
MS.gene028327.t1 MTR_2g032030 43.878 98 52 2 97 191 231 328 1.56e-19 88.6
MS.gene028327.t1 MTR_1g013760 57.895 57 23 1 132 187 141 197 2.33e-19 86.3
MS.gene028327.t1 MTR_3g009470 64.062 64 22 1 131 194 280 342 2.40e-19 88.2
MS.gene028327.t1 MTR_2g016770 56.667 60 25 1 132 190 36 95 2.70e-19 84.7
MS.gene028327.t1 MTR_7g079040 59.016 61 24 1 132 191 155 215 2.90e-19 86.7
MS.gene028327.t1 MTR_2g016770 56.667 60 25 1 132 190 28 87 3.49e-19 84.0
MS.gene028327.t1 MTR_8g087000 58.065 62 25 1 132 192 78 139 4.86e-19 84.3
MS.gene028327.t1 MTR_8g028565 57.377 61 25 1 132 191 156 216 5.08e-19 85.9
MS.gene028327.t1 MTR_8g087000 58.065 62 25 1 132 192 77 138 5.62e-19 84.3
MS.gene028327.t1 MTR_4g127040 39.560 91 54 1 98 187 212 302 1.31e-18 84.7
MS.gene028327.t1 MTR_4g007060 51.613 62 29 1 130 190 127 188 1.50e-18 84.0
MS.gene028327.t1 MTR_4g007060 51.613 62 29 1 130 190 161 222 2.04e-18 84.0
MS.gene028327.t1 MTR_3g106060 54.237 59 26 1 130 187 137 195 3.81e-18 82.8
MS.gene028327.t1 MTR_3g108960 32.500 160 95 4 29 187 224 371 4.73e-18 84.0
MS.gene028327.t1 MTR_1g070455 54.839 62 26 2 132 191 294 355 1.13e-17 82.4
MS.gene028327.t1 MTR_2g083870 56.667 60 25 1 132 190 81 140 1.15e-17 80.9
MS.gene028327.t1 MTR_1g078260 47.887 71 36 1 118 187 234 304 1.62e-17 82.8
MS.gene028327.t1 MTR_3g031220 40.179 112 61 3 114 224 185 291 6.69e-17 80.5
MS.gene028327.t1 MTR_4g094908 40.244 82 48 1 107 187 242 323 7.77e-17 79.7
MS.gene028327.t1 MTR_2g024350 52.239 67 30 2 128 192 4 70 8.06e-17 78.2
MS.gene028327.t1 MTR_1g099600 46.341 82 42 2 112 191 165 246 1.75e-16 78.6
MS.gene028327.t1 MTR_2g024380 43.902 82 44 2 112 191 231 312 2.45e-16 79.3
MS.gene028327.t1 MTR_8g099350 43.000 100 44 3 107 198 103 197 2.47e-16 78.6
MS.gene028327.t1 MTR_5g097500 48.684 76 39 0 116 191 215 290 2.61e-16 78.2
MS.gene028327.t1 MTR_1g013790 38.947 95 48 3 130 223 100 185 2.73e-16 77.0
MS.gene028327.t1 MTR_5g029850 82.500 40 7 0 109 148 29 68 2.94e-16 72.4
MS.gene028327.t1 MTR_4g047580 37.391 115 67 3 81 194 235 345 3.34e-16 79.0
MS.gene028327.t1 MTR_0117s0040 45.070 71 38 1 118 187 61 131 1.03e-15 75.5
MS.gene028327.t1 MTR_2g075610 45.455 77 37 2 130 203 28 102 7.41e-15 71.6
MS.gene028327.t1 MTR_8g067650 38.000 100 60 2 102 199 309 408 1.04e-14 74.3
MS.gene028327.t1 MTR_5g067680 35.971 139 82 3 50 185 125 259 1.24e-14 73.6
MS.gene028327.t1 MTR_8g069935 39.785 93 54 2 100 190 299 391 1.63e-14 73.6
MS.gene028327.t1 MTR_8g067635 37.624 101 61 2 100 198 317 417 2.08e-14 73.6
MS.gene028327.t1 MTR_2g075750 43.038 79 40 2 130 205 27 103 2.85e-14 70.1
MS.gene028327.t1 MTR_3g090860 46.377 69 34 1 130 195 132 200 2.93e-14 72.4
MS.gene028327.t1 MTR_5g074200 44.186 86 44 3 124 206 211 295 1.25e-13 70.5
MS.gene028327.t1 MTR_7g117200 41.758 91 47 3 100 185 86 175 3.92e-13 68.9
MS.gene028327.t1 MTR_8g027860 32.877 146 72 5 130 262 135 267 4.56e-13 68.9
MS.gene028327.t1 MTR_6g053200 40.000 75 44 1 131 204 330 404 4.65e-13 69.3
MS.gene028327.t1 MTR_7g073430 40.625 96 50 3 96 185 85 179 5.19e-13 68.2
MS.gene028327.t1 MTR_7g073380 31.343 134 83 4 90 220 83 210 7.55e-13 67.8
MS.gene028327.t1 MTR_8g005750 41.000 100 49 4 91 185 66 160 9.89e-13 67.4
MS.gene028327.t1 MTR_3g095080 38.318 107 59 2 49 153 89 190 1.35e-12 65.5
MS.gene028327.t1 MTR_2g075680 35.772 123 60 3 66 185 99 205 1.36e-12 67.4
MS.gene028327.t1 MTR_2g075700 43.333 90 45 2 99 185 115 201 1.53e-12 67.0
MS.gene028327.t1 MTR_8g032510 40.000 90 45 3 131 211 119 208 2.54e-12 66.2
MS.gene028327.t1 MTR_8g092010 41.772 79 39 2 83 157 59 134 4.37e-12 62.8
MS.gene028327.t1 MTR_5g067700 39.080 87 48 3 130 212 105 190 5.08e-12 64.7
MS.gene028327.t1 MTR_3g093830 32.414 145 90 4 44 185 45 184 9.82e-12 64.7
MS.gene028327.t1 MTR_5g044695 41.379 58 34 0 100 157 46 103 4.09e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene028327.t1 AT4G18170 49.653 288 120 10 2 285 48 314 2.25e-65 207
MS.gene028327.t1 AT1G29860 54.706 170 65 3 115 284 120 277 2.93e-55 180
MS.gene028327.t1 AT5G46350 45.487 277 110 10 26 285 70 322 1.46e-52 175
MS.gene028327.t1 AT1G69310 47.312 186 72 3 106 286 122 286 1.68e-45 155
MS.gene028327.t1 AT1G69310 47.312 186 72 3 106 286 122 286 1.68e-45 155
MS.gene028327.t1 AT1G69310 47.312 186 72 3 106 286 122 286 1.68e-45 155
MS.gene028327.t1 AT2G47260 75.000 88 22 0 107 194 150 237 3.58e-43 150
MS.gene028327.t1 AT5G49520 45.652 184 90 2 115 288 205 388 2.16e-42 150
MS.gene028327.t1 AT1G69310 45.161 186 72 4 106 286 122 282 7.11e-40 140
MS.gene028327.t1 AT3G62340 58.763 97 38 1 109 205 96 190 3.31e-35 128
MS.gene028327.t1 AT4G39410 67.857 84 27 0 104 187 196 279 4.53e-35 129
MS.gene028327.t1 AT2G44745 63.441 93 33 1 95 187 110 201 1.64e-34 125
MS.gene028327.t1 AT2G46130 65.823 79 27 0 111 189 10 88 1.13e-32 116
MS.gene028327.t1 AT5G07100 53.535 99 46 0 103 201 113 211 1.62e-32 119
MS.gene028327.t1 AT5G07100 46.479 71 38 0 131 201 24 94 8.85e-15 72.4
MS.gene028327.t1 AT5G07100 53.535 99 46 0 103 201 113 211 1.62e-32 119
MS.gene028327.t1 AT5G07100 46.479 71 38 0 131 201 24 94 8.85e-15 72.4
MS.gene028327.t1 AT5G07100 53.535 99 46 0 103 201 113 211 1.62e-32 119
MS.gene028327.t1 AT5G07100 46.479 71 38 0 131 201 24 94 8.85e-15 72.4
MS.gene028327.t1 AT5G07100 53.535 99 46 0 103 201 113 211 1.62e-32 119
MS.gene028327.t1 AT5G07100 46.479 71 38 0 131 201 24 94 8.85e-15 72.4
MS.gene028327.t1 AT5G07100 45.185 135 62 1 67 201 182 304 2.73e-32 121
MS.gene028327.t1 AT5G07100 46.479 71 38 0 131 201 117 187 1.47e-14 73.2
MS.gene028327.t1 AT2G03340 42.759 145 74 2 57 192 332 476 1.15e-31 123
MS.gene028327.t1 AT2G03340 60.606 66 24 2 131 196 250 313 9.11e-18 83.6
MS.gene028327.t1 AT1G64000 58.824 85 35 0 105 189 88 172 2.98e-31 115
MS.gene028327.t1 AT1G13960 45.522 134 69 1 57 190 339 468 1.14e-30 120
MS.gene028327.t1 AT1G13960 59.701 67 25 2 131 196 229 294 2.44e-17 82.4
MS.gene028327.t1 AT1G13960 45.522 134 69 1 57 190 186 315 1.24e-30 118
MS.gene028327.t1 AT1G13960 59.701 67 25 2 131 196 76 141 4.25e-17 80.9
MS.gene028327.t1 AT5G41570 60.494 81 32 0 109 189 76 156 1.46e-30 113
MS.gene028327.t1 AT5G26170 65.714 70 24 0 118 187 100 169 3.11e-30 112
MS.gene028327.t1 AT4G26640 62.963 81 30 0 112 192 186 266 8.02e-30 116
MS.gene028327.t1 AT4G26640 54.286 70 31 1 131 200 35 103 5.98e-17 80.5
MS.gene028327.t1 AT4G26640 62.963 81 30 0 112 192 186 266 8.02e-30 116
MS.gene028327.t1 AT4G26640 54.286 70 31 1 131 200 35 103 5.98e-17 80.5
MS.gene028327.t1 AT4G26640 62.963 81 30 0 112 192 186 266 8.02e-30 116
MS.gene028327.t1 AT4G26640 54.286 70 31 1 131 200 35 103 5.98e-17 80.5
MS.gene028327.t1 AT4G26640 62.963 81 30 0 112 192 186 266 8.02e-30 116
MS.gene028327.t1 AT4G26640 54.286 70 31 1 131 200 35 103 5.98e-17 80.5
MS.gene028327.t1 AT3G01080 68.000 75 24 0 116 190 329 403 8.51e-30 117
MS.gene028327.t1 AT3G01080 54.412 68 30 1 131 198 205 271 7.99e-17 80.5
MS.gene028327.t1 AT3G01080 68.000 75 24 0 116 190 291 365 9.31e-30 117
MS.gene028327.t1 AT3G01080 54.412 68 30 1 131 198 167 233 1.20e-16 80.1
MS.gene028327.t1 AT5G13080 64.000 75 27 0 118 192 54 128 9.97e-30 110
MS.gene028327.t1 AT4G26640 62.963 81 30 0 112 192 290 370 2.69e-29 116
MS.gene028327.t1 AT4G26640 54.286 70 31 1 131 200 139 207 8.14e-17 80.5
MS.gene028327.t1 AT4G26640 62.963 81 30 0 112 192 322 402 2.71e-29 116
MS.gene028327.t1 AT4G26640 54.286 70 31 1 131 200 171 239 7.62e-17 80.9
MS.gene028327.t1 AT3G01970 63.889 72 26 0 118 189 52 123 2.77e-29 109
MS.gene028327.t1 AT4G26640 62.963 81 30 0 112 192 362 442 3.28e-29 116
MS.gene028327.t1 AT4G26640 54.286 70 31 1 131 200 211 279 7.66e-17 80.9
MS.gene028327.t1 AT2G38470 53.535 99 46 0 112 210 343 441 1.38e-28 114
MS.gene028327.t1 AT2G38470 63.333 60 21 1 131 190 184 242 8.71e-17 80.5
MS.gene028327.t1 AT2G30250 61.446 83 32 0 112 194 309 391 2.09e-28 112
MS.gene028327.t1 AT2G30250 42.857 91 37 3 132 210 167 254 9.54e-14 71.2
MS.gene028327.t1 AT5G56270 62.821 78 29 0 115 192 471 548 2.34e-28 114
MS.gene028327.t1 AT5G56270 65.000 60 20 1 131 190 273 331 1.88e-17 82.8
MS.gene028327.t1 AT2G46130 60.759 79 27 1 111 189 10 84 3.35e-27 102
MS.gene028327.t1 AT4G26440 47.107 121 48 3 72 192 329 433 2.24e-26 108
MS.gene028327.t1 AT4G26440 58.333 60 24 1 131 190 178 236 1.13e-14 74.3
MS.gene028327.t1 AT5G64810 43.269 104 59 0 97 200 76 179 2.58e-26 102
MS.gene028327.t1 AT4G04450 42.241 116 65 2 94 207 160 275 3.39e-25 104
MS.gene028327.t1 AT4G04450 42.241 116 65 2 94 207 254 369 1.00e-24 103
MS.gene028327.t1 AT2G04880 56.250 80 35 0 111 190 263 342 1.04e-24 103
MS.gene028327.t1 AT2G04880 55.738 61 26 1 130 190 110 169 1.72e-14 73.6
MS.gene028327.t1 AT2G04880 56.250 80 35 0 111 190 287 366 1.27e-24 103
MS.gene028327.t1 AT2G04880 53.968 63 28 1 130 192 110 171 1.90e-14 73.6
MS.gene028327.t1 AT2G21900 44.330 97 49 2 106 197 79 175 1.53e-24 98.2
MS.gene028327.t1 AT1G62300 28.947 266 137 8 63 288 237 490 7.27e-24 101
MS.gene028327.t1 AT4G22070 47.126 87 45 1 105 190 271 357 3.01e-23 99.8
MS.gene028327.t1 AT4G22070 47.126 87 45 1 105 190 271 357 3.01e-23 99.8
MS.gene028327.t1 AT4G22070 47.126 87 45 1 105 190 271 357 3.01e-23 99.8
MS.gene028327.t1 AT4G22070 47.126 87 45 1 105 190 271 357 3.01e-23 99.8
MS.gene028327.t1 AT2G37260 51.765 85 40 1 103 187 240 323 4.82e-23 97.4
MS.gene028327.t1 AT2G37260 54.430 79 34 2 114 191 65 142 5.51e-17 80.5
MS.gene028327.t1 AT2G37260 51.765 85 40 1 103 187 242 325 4.94e-23 97.4
MS.gene028327.t1 AT2G37260 54.430 79 34 2 114 191 67 144 5.49e-17 80.5
MS.gene028327.t1 AT2G37260 51.765 85 40 1 103 187 322 405 7.52e-23 97.8
MS.gene028327.t1 AT2G37260 54.430 79 34 2 114 191 147 224 7.24e-17 80.5
MS.gene028327.t1 AT1G55600 51.899 79 38 0 112 190 288 366 7.81e-22 95.5
MS.gene028327.t1 AT1G80840 41.026 117 59 4 86 196 100 212 1.39e-21 92.8
MS.gene028327.t1 AT1G68150 42.056 107 60 2 115 219 219 325 1.50e-21 93.6
MS.gene028327.t1 AT4G30935 46.667 90 46 1 115 202 315 404 9.72e-21 92.0
MS.gene028327.t1 AT2G30590 45.783 83 44 1 107 188 289 371 1.34e-20 90.9
MS.gene028327.t1 AT1G18860 49.351 77 38 1 115 190 223 299 1.54e-20 91.7
MS.gene028327.t1 AT4G31800 49.296 71 35 1 130 199 110 180 2.50e-20 88.2
MS.gene028327.t1 AT4G31800 49.296 71 35 1 130 199 175 245 4.17e-20 88.6
MS.gene028327.t1 AT1G29280 58.333 60 24 1 132 190 75 134 4.71e-20 87.8
MS.gene028327.t1 AT4G01720 49.351 77 38 1 115 190 223 299 4.78e-20 90.1
MS.gene028327.t1 AT2G23320 34.437 151 84 3 41 189 162 299 5.51e-20 88.6
MS.gene028327.t1 AT4G01250 59.016 61 24 1 132 191 129 189 1.07e-19 87.4
MS.gene028327.t1 AT2G25000 54.839 62 27 1 130 190 102 163 1.25e-19 85.9
MS.gene028327.t1 AT2G25000 54.839 62 27 1 130 190 102 163 1.25e-19 85.9
MS.gene028327.t1 AT2G34830 43.878 98 52 2 97 191 188 285 1.90e-19 88.2
MS.gene028327.t1 AT2G34830 43.878 98 52 2 97 191 179 276 1.90e-19 88.2
MS.gene028327.t1 AT2G25000 54.839 62 27 1 130 190 124 185 2.17e-19 85.5
MS.gene028327.t1 AT2G25000 54.839 62 27 1 130 190 145 206 3.08e-19 85.5
MS.gene028327.t1 AT5G43290 62.069 58 22 0 130 187 113 170 4.82e-19 85.1
MS.gene028327.t1 AT3G58710 52.113 71 33 1 123 192 62 132 5.09e-19 85.1
MS.gene028327.t1 AT3G58710 52.113 71 33 1 123 192 63 133 5.27e-19 85.1
MS.gene028327.t1 AT5G52830 50.602 83 37 2 132 210 166 248 5.59e-19 85.9
MS.gene028327.t1 AT5G45050 57.353 68 27 2 132 198 1153 1219 6.01e-19 87.4
MS.gene028327.t1 AT5G45050 57.353 68 27 2 132 198 1042 1108 6.03e-19 87.4
MS.gene028327.t1 AT5G45050 57.353 68 27 2 132 198 1181 1247 6.09e-19 87.4
MS.gene028327.t1 AT4G31550 43.902 82 45 1 107 187 221 302 9.04e-19 85.1
MS.gene028327.t1 AT4G31550 40.659 91 53 1 98 187 213 303 9.89e-19 85.1
MS.gene028327.t1 AT5G15130 42.222 90 50 2 105 192 158 247 1.09e-18 86.3
MS.gene028327.t1 AT5G15130 45.570 79 42 1 115 192 211 289 1.25e-18 86.3
MS.gene028327.t1 AT1G30650 41.509 106 57 3 97 199 181 284 1.49e-18 85.5
MS.gene028327.t1 AT2G24570 41.758 91 52 1 98 187 210 300 1.60e-18 84.3
MS.gene028327.t1 AT4G23550 50.000 78 35 2 126 199 135 212 3.26e-18 83.6
MS.gene028327.t1 AT4G24240 39.130 92 55 1 97 187 247 338 9.52e-18 82.8
MS.gene028327.t1 AT3G01080 54.412 68 30 1 131 198 205 271 2.92e-17 80.9
MS.gene028327.t1 AT1G69810 44.186 86 46 2 115 198 129 214 4.45e-17 80.5
MS.gene028327.t1 AT1G69810 44.186 86 46 2 115 198 187 272 5.74e-17 80.5
MS.gene028327.t1 AT5G28650 40.476 84 49 1 105 187 236 319 6.75e-17 80.1
MS.gene028327.t1 AT3G04670 39.286 84 50 1 105 187 236 319 3.55e-16 77.8
MS.gene028327.t1 AT3G56400 33.562 146 64 4 55 185 50 177 9.24e-14 70.5
MS.gene028327.t1 AT2G46400 39.048 105 59 2 84 185 59 161 9.69e-14 70.5
MS.gene028327.t1 AT1G66560 51.724 58 25 1 131 185 103 160 1.06e-13 69.7
MS.gene028327.t1 AT5G45260 39.048 105 60 2 96 197 1174 1277 2.64e-13 70.9
MS.gene028327.t1 AT4G12020 42.105 95 41 2 57 151 581 661 2.83e-13 70.5
MS.gene028327.t1 AT4G12020 50.000 62 30 1 129 190 466 526 2.05e-12 68.2
MS.gene028327.t1 AT4G12020 42.105 95 41 2 57 151 581 661 2.91e-13 70.5
MS.gene028327.t1 AT4G12020 50.000 62 30 1 129 190 466 526 2.05e-12 68.2
MS.gene028327.t1 AT4G12020 42.105 95 41 2 57 151 581 661 3.14e-13 70.5
MS.gene028327.t1 AT4G12020 50.000 62 30 1 129 190 466 526 2.33e-12 67.8
MS.gene028327.t1 AT4G12020 42.105 95 41 2 57 151 514 594 3.15e-13 70.5
MS.gene028327.t1 AT4G12020 50.000 62 30 1 129 190 399 459 2.30e-12 67.8
MS.gene028327.t1 AT4G12020 42.105 95 41 2 57 151 581 661 3.17e-13 70.5
MS.gene028327.t1 AT4G12020 50.000 62 30 1 129 190 466 526 1.96e-12 68.2
MS.gene028327.t1 AT4G12020 42.105 95 41 2 57 151 581 661 3.17e-13 70.5
MS.gene028327.t1 AT4G12020 50.000 62 30 1 129 190 466 526 1.96e-12 68.2
MS.gene028327.t1 AT4G12020 42.105 95 41 2 57 151 581 661 3.20e-13 70.5
MS.gene028327.t1 AT4G12020 50.000 62 30 1 129 190 466 526 2.33e-12 67.8
MS.gene028327.t1 AT4G12020 42.105 95 41 2 57 151 581 661 3.27e-13 70.5
MS.gene028327.t1 AT4G12020 50.000 62 30 1 129 190 466 526 2.13e-12 68.2
MS.gene028327.t1 AT4G12020 42.105 95 41 2 57 151 581 661 3.45e-13 70.5
MS.gene028327.t1 AT4G12020 50.000 62 30 1 129 190 466 526 2.23e-12 67.8
MS.gene028327.t1 AT4G12020 42.105 95 41 2 57 151 581 661 3.45e-13 70.5
MS.gene028327.t1 AT4G12020 50.000 62 30 1 129 190 466 526 2.23e-12 67.8
MS.gene028327.t1 AT4G12020 42.105 95 41 2 57 151 581 661 3.76e-13 70.1
MS.gene028327.t1 AT4G12020 50.000 62 30 1 129 190 466 526 2.92e-12 67.4
MS.gene028327.t1 AT2G40740 36.975 119 68 3 80 192 123 240 4.02e-13 68.6
MS.gene028327.t1 AT2G40740 36.975 119 68 3 80 192 132 249 4.59e-13 68.6
MS.gene028327.t1 AT1G66600 50.000 60 27 1 129 185 101 160 1.82e-12 66.2
MS.gene028327.t1 AT4G11070 51.724 58 25 1 131 185 109 166 2.50e-12 66.2
MS.gene028327.t1 AT4G11070 51.724 58 25 1 131 185 141 198 2.82e-12 66.6
MS.gene028327.t1 AT1G80590 46.032 63 31 1 132 191 86 148 7.52e-12 64.3
MS.gene028327.t1 AT5G01900 50.877 57 25 1 132 185 111 167 1.18e-11 63.9
MS.gene028327.t1 AT1G66550 49.123 57 26 1 132 185 104 160 1.38e-11 63.9
MS.gene028327.t1 AT1G66550 49.123 57 26 1 132 185 109 165 1.69e-11 63.5
MS.gene028327.t1 AT5G24110 39.506 81 41 3 113 185 90 170 1.88e-11 63.9
MS.gene028327.t1 AT4G23810 50.000 58 26 1 131 185 158 215 4.26e-11 63.2
MS.gene028327.t1 AT2G40750 39.394 99 50 3 97 185 111 209 7.21e-11 62.4

Find 68 sgRNAs with CRISPR-Local

Find 101 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGCAGCCGCATTGCCTCTT+AGG 0.193434 4.2:+17717794 None:intergenic
TCACCACTTGCAACTTCTTT+TGG 0.209987 4.2:-17718902 MS.gene028327:CDS
AATGTTGTTGTGTGAATAAA+TGG 0.267587 4.2:+17717624 None:intergenic
AAGCCTTCAGCTGGAGAATT+AGG 0.278295 4.2:-17718824 MS.gene028327:CDS
GGAGTAGAAGAAGAAGATTC+AGG 0.323631 4.2:-17718734 MS.gene028327:CDS
GGATACAGATGGAGAAAATA+TGG 0.347876 4.2:-17718438 MS.gene028327:CDS
TATGTTGTTATCACAGTTGT+TGG 0.355489 4.2:+17717850 None:intergenic
CAACTTCCTCCTGATCAATA+TGG 0.365572 4.2:-17717571 MS.gene028327:CDS
ACACCTACTCCTTTCTCATA+TGG 0.380056 4.2:-17717745 MS.gene028327:CDS
TCCCTTCCATGTTCCTCAAC+AGG 0.390401 4.2:-17717531 MS.gene028327:CDS
CATACTACTAATACCGTTGC+TGG 0.398105 4.2:-17717649 MS.gene028327:CDS
TGCAGCCGCATTGCCTCTTA+GGG 0.408589 4.2:+17717795 None:intergenic
TCCTTTCTTCTTATCCACCT+TGG 0.434292 4.2:+17718527 None:intergenic
TTTATAATTTACCTAGGGTA+TGG 0.441482 4.2:+17718393 None:intergenic
ATGTTGTTATCACAGTTGTT+GGG 0.446092 4.2:+17717851 None:intergenic
CGCATTGCCTCTTAGGGAAG+TGG 0.472239 4.2:+17717801 None:intergenic
GTATTAGTAGTATGTGTTGT+TGG 0.475446 4.2:+17717658 None:intergenic
GGTGTAGATAGCAAATTAGA+AGG 0.479581 4.2:+17717763 None:intergenic
CACCTACTCCTTTCTCATAT+GGG 0.481494 4.2:-17717744 MS.gene028327:CDS
AGATGAGTTAAGTGTAGCAA+GGG 0.485632 4.2:+17718787 None:intergenic
AATTCCTCATCTTCTGAAGC+TGG 0.488007 4.2:-17718758 MS.gene028327:CDS
TGAAGGAGTCCATATTGATC+AGG 0.488151 4.2:+17717562 None:intergenic
TGTTGGTTGAGTGATATTGA+AGG 0.491271 4.2:+17717675 None:intergenic
CCTCTTAGGGAAGTGGGGAC+AGG 0.494658 4.2:+17717808 None:intergenic
TGGAAGGGACAATGTCTTGA+AGG 0.497629 4.2:+17717545 None:intergenic
GGAAATCAAAAGCCTTCAGC+TGG 0.499259 4.2:-17718833 MS.gene028327:CDS
GATTAATAATTAGTTGTGGT+TGG 0.509207 4.2:+17717507 None:intergenic
TAGATGAGTTAAGTGTAGCA+AGG 0.516970 4.2:+17718786 None:intergenic
CCTGTCCCCACTTCCCTAAG+AGG 0.516979 4.2:-17717808 MS.gene028327:CDS
GAAGTTGATCAGCTAGAAGA+TGG 0.517078 4.2:-17718459 MS.gene028327:CDS
TGTGGTGGTGCATGTGGAGA+AGG 0.522721 4.2:+17717701 None:intergenic
AGTTTCACTGAAAGTTTACA+AGG 0.526044 4.2:-17718947 MS.gene028327:CDS
ACCAAGGTGGATAAGAAGAA+AGG 0.531162 4.2:-17718528 MS.gene028327:CDS
ACTATCTCCTTCTTCATCAG+AGG 0.542665 4.2:-17718876 MS.gene028327:CDS
ACTGTGATAACAACATATGA+AGG 0.544058 4.2:-17717844 MS.gene028327:CDS
AGGTGTTGTGGTGGTGCATG+TGG 0.547185 4.2:+17717695 None:intergenic
GAGTGATATTGAAGGTGTTG+TGG 0.553555 4.2:+17717683 None:intergenic
TTTGTCATGAAAGCAAACCT+TGG 0.560103 4.2:+17718486 None:intergenic
GCATTGCCTCTTAGGGAAGT+GGG 0.561932 4.2:+17717802 None:intergenic
GTTGGTCCTGTTGAGGAACA+TGG 0.565768 4.2:+17717525 None:intergenic
AAGTTTGACCCATATGAGAA+AGG 0.572488 4.2:+17717736 None:intergenic
TGAATAAATGGAACCAGCAA+CGG 0.572616 4.2:+17717636 None:intergenic
GAAAGGAGAGAAGAAGCAGA+AGG 0.575055 4.2:-17718511 MS.gene028327:CDS
ATGTGGAGAAGGAGATCTTG+AGG 0.575636 4.2:+17717712 None:intergenic
TGTGGAGAAGGAGATCTTGA+GGG 0.577615 4.2:+17717713 None:intergenic
TCCTCCAGCTTCAGAAGATG+AGG 0.581022 4.2:+17718754 None:intergenic
TCCTGTTGAGGAACATGGAA+GGG 0.589573 4.2:+17717530 None:intergenic
AGTTGTGGTTGGTCCTGTTG+AGG 0.591010 4.2:+17717518 None:intergenic
AGCTAGAAGATGGATACAGA+TGG 0.593410 4.2:-17718449 MS.gene028327:CDS
AGAAGAAGCAGAAGGAACCA+AGG 0.601386 4.2:-17718503 MS.gene028327:CDS
TCAAGAATAGTCCATACCCT+AGG 0.603668 4.2:-17718404 MS.gene028327:intron
AAGTTTACAAGGAGGAAACA+TGG 0.604167 4.2:-17718936 MS.gene028327:CDS
TCAGCTGGAGAATTAGGTGG+TGG 0.610560 4.2:-17718818 MS.gene028327:CDS
CCACCTAATTCTCCAGCTGA+AGG 0.620428 4.2:+17718821 None:intergenic
GTCCTGTTGAGGAACATGGA+AGG 0.623164 4.2:+17717529 None:intergenic
GACCCATATGAGAAAGGAGT+AGG 0.632698 4.2:+17717742 None:intergenic
ACTCCAAAAGAAGTTGCAAG+TGG 0.634162 4.2:+17718899 None:intergenic
AGGAGTCCATATTGATCAGG+AGG 0.634490 4.2:+17717565 None:intergenic
TCTTGATTAATAATTAGTTG+TGG 0.637795 4.2:+17717503 None:intergenic
TGATATTGAAGGTGTTGTGG+TGG 0.638159 4.2:+17717686 None:intergenic
TCCTCATCTTCTGAAGCTGG+AGG 0.647810 4.2:-17718755 MS.gene028327:CDS
GGGCAGGTTAAAGAAGAACC+AGG 0.654664 4.2:-17718692 MS.gene028327:CDS
TTCACTGAAAGTTTACAAGG+AGG 0.659840 4.2:-17718944 MS.gene028327:CDS
CCTTCAGCTGGAGAATTAGG+TGG 0.660060 4.2:-17718821 MS.gene028327:CDS
CATTGCCTCTTAGGGAAGTG+GGG 0.682570 4.2:+17717803 None:intergenic
GAAATACAGGAACACCAAGG+TGG 0.704287 4.2:-17718541 MS.gene028327:intron
CACTTCCCTAAGAGGCAATG+CGG 0.742780 4.2:-17717800 MS.gene028327:CDS
AATGAAATACAGGAACACCA+AGG 0.750672 4.2:-17718544 MS.gene028327:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTACTTAATATATGTTT+TGG - chr4.2:17717899-17717918 MS.gene028327:CDS 10.0%
!! AACTGTTTATAATTTACCTA+GGG + chr4.2:17718081-17718100 None:intergenic 20.0%
!! ATATATATTAATGTCTCTCT+TGG + chr4.2:17718313-17718332 None:intergenic 20.0%
!! GAAAGAGAAAGAAAAATATT+GGG - chr4.2:17717754-17717773 MS.gene028327:CDS 20.0%
!! TAAAAACAAAAGGAAATGAA+AGG - chr4.2:17718351-17718370 MS.gene028327:intron 20.0%
!! TATATATTAATGTCTCTCTT+GGG + chr4.2:17718312-17718331 None:intergenic 20.0%
!!! TATTGACTTTGTTTTAATAG+TGG + chr4.2:17718126-17718145 None:intergenic 20.0%
! AATGTTGTTGTGTGAATAAA+TGG + chr4.2:17718845-17718864 None:intergenic 25.0%
! AGACAATTAAGTTAAAGAAG+AGG + chr4.2:17717835-17717854 None:intergenic 25.0%
! CAACTGTTTATAATTTACCT+AGG + chr4.2:17718082-17718101 None:intergenic 25.0%
! GGAAAGAGAAAGAAAAATAT+TGG - chr4.2:17717753-17717772 MS.gene028327:CDS 25.0%
! TACTTGATGTAATTTGAACA+TGG + chr4.2:17718398-17718417 None:intergenic 25.0%
! TAGACTATAGAGTATAGTAT+AGG + chr4.2:17718182-17718201 None:intergenic 25.0%
! TCATAGCTAGTAAAAACAAA+AGG - chr4.2:17718341-17718360 MS.gene028327:intron 25.0%
! TTATAAACAGTTGCATTCAA+TGG - chr4.2:17718089-17718108 MS.gene028327:intron 25.0%
! TTTATAATTTACCTAGGGTA+TGG + chr4.2:17718076-17718095 None:intergenic 25.0%
!!! CTTTGTTTTAATAGTGGTAA+TGG + chr4.2:17718120-17718139 None:intergenic 25.0%
!!! TATGTTTTGGAATGAAATAC+AGG - chr4.2:17717912-17717931 MS.gene028327:CDS 25.0%
AAACCCTTGAGTTTAATTGA+TGG - chr4.2:17717859-17717878 MS.gene028327:CDS 30.0%
ACTGTGATAACAACATATGA+AGG - chr4.2:17718622-17718641 MS.gene028327:intron 30.0%
AGTTTCACTGAAAGTTTACA+AGG - chr4.2:17717519-17717538 MS.gene028327:CDS 30.0%
ATGTTGTTATCACAGTTGTT+GGG + chr4.2:17718618-17718637 None:intergenic 30.0%
GAAATGAAAGGAAAGTCAAA+AGG - chr4.2:17718363-17718382 MS.gene028327:intron 30.0%
GTATTAGTAGTATGTGTTGT+TGG + chr4.2:17718811-17718830 None:intergenic 30.0%
TATGTTGTTATCACAGTTGT+TGG + chr4.2:17718619-17718638 None:intergenic 30.0%
TCTAGTTACCATCAAAACAA+TGG - chr4.2:17718440-17718459 MS.gene028327:CDS 30.0%
!! GAAATTGCATTTGATTTTGC+AGG - chr4.2:17718527-17718546 MS.gene028327:CDS 30.0%
!! GACAAGAAAGCTCTAAAAAT+GGG - chr4.2:17717796-17717815 MS.gene028327:CDS 30.0%
!!! GTTTTTTCTTCTGTTGATCA+AGG - chr4.2:17717612-17717631 MS.gene028327:CDS 30.0%
AAGTTTACAAGGAGGAAACA+TGG - chr4.2:17717530-17717549 MS.gene028327:CDS 35.0%
AAGTTTGACCCATATGAGAA+AGG + chr4.2:17718733-17718752 None:intergenic 35.0%
AATGAAATACAGGAACACCA+AGG - chr4.2:17717922-17717941 MS.gene028327:intron 35.0%
AGATGAGTTAAGTGTAGCAA+GGG + chr4.2:17717682-17717701 None:intergenic 35.0%
CAAGTATACAACTCTAGCTA+GGG - chr4.2:17718412-17718431 MS.gene028327:CDS 35.0%
GAAAAAACCTCTGATGAAGA+AGG + chr4.2:17717600-17717619 None:intergenic 35.0%
GAGAAAGAAAAATATTGGGC+AGG - chr4.2:17717758-17717777 MS.gene028327:CDS 35.0%
GCACCATCAATTAAACTCAA+GGG + chr4.2:17717865-17717884 None:intergenic 35.0%
GGATACAGATGGAGAAAATA+TGG - chr4.2:17718028-17718047 MS.gene028327:intron 35.0%
GGTGTAGATAGCAAATTAGA+AGG + chr4.2:17718706-17718725 None:intergenic 35.0%
TAGATGAGTTAAGTGTAGCA+AGG + chr4.2:17717683-17717702 None:intergenic 35.0%
TCAAGTATACAACTCTAGCT+AGG - chr4.2:17718411-17718430 MS.gene028327:CDS 35.0%
TGAATAAATGGAACCAGCAA+CGG + chr4.2:17718833-17718852 None:intergenic 35.0%
TGCACCATCAATTAAACTCA+AGG + chr4.2:17717866-17717885 None:intergenic 35.0%
TTCACTGAAAGTTTACAAGG+AGG - chr4.2:17717522-17717541 MS.gene028327:CDS 35.0%
TTTGTCATGAAAGCAAACCT+TGG + chr4.2:17717983-17718002 None:intergenic 35.0%
! TGTTGGTTGAGTGATATTGA+AGG + chr4.2:17718794-17718813 None:intergenic 35.0%
!! GGACAAGAAAGCTCTAAAAA+TGG - chr4.2:17717795-17717814 MS.gene028327:CDS 35.0%
!!! TACACAAGCCATTGTTTTGA+TGG + chr4.2:17718451-17718470 None:intergenic 35.0%
!!! TTTTTAGAGCTTTCTTGTCC+TGG + chr4.2:17717795-17717814 None:intergenic 35.0%
AATGTCTCTCTTGGGAACAT+GGG + chr4.2:17718304-17718323 None:intergenic 40.0%
ACACCTACTCCTTTCTCATA+TGG - chr4.2:17718721-17718740 MS.gene028327:CDS 40.0%
ACCAAGGTGGATAAGAAGAA+AGG - chr4.2:17717938-17717957 MS.gene028327:intron 40.0%
ACTATCTCCTTCTTCATCAG+AGG - chr4.2:17717590-17717609 MS.gene028327:CDS 40.0%
ACTCCAAAAGAAGTTGCAAG+TGG + chr4.2:17717570-17717589 None:intergenic 40.0%
AGCTAGAAGATGGATACAGA+TGG - chr4.2:17718017-17718036 MS.gene028327:intron 40.0%
CAACTTCCTCCTGATCAATA+TGG - chr4.2:17718895-17718914 MS.gene028327:CDS 40.0%
CACCTACTCCTTTCTCATAT+GGG - chr4.2:17718722-17718741 MS.gene028327:CDS 40.0%
CATACTACTAATACCGTTGC+TGG - chr4.2:17718817-17718836 MS.gene028327:CDS 40.0%
GGAGTAGAAGAAGAAGATTC+AGG - chr4.2:17717732-17717751 MS.gene028327:CDS 40.0%
TAATGTCTCTCTTGGGAACA+TGG + chr4.2:17718305-17718324 None:intergenic 40.0%
TCAAGAATAGTCCATACCCT+AGG - chr4.2:17718062-17718081 MS.gene028327:intron 40.0%
TCCTTTCTTCTTATCCACCT+TGG + chr4.2:17717942-17717961 None:intergenic 40.0%
TGAAGGAGTCCATATTGATC+AGG + chr4.2:17718907-17718926 None:intergenic 40.0%
! GAAGTTGATCAGCTAGAAGA+TGG - chr4.2:17718007-17718026 MS.gene028327:intron 40.0%
! GATTTTGCAGGAGCTATTAC+AGG - chr4.2:17718539-17718558 MS.gene028327:intron 40.0%
! TCACCACTTGCAACTTCTTT+TGG - chr4.2:17717564-17717583 MS.gene028327:CDS 40.0%
!! AATTCCTCATCTTCTGAAGC+TGG - chr4.2:17717708-17717727 MS.gene028327:CDS 40.0%
!! GAGTGATATTGAAGGTGTTG+TGG + chr4.2:17718786-17718805 None:intergenic 40.0%
!! TGATATTGAAGGTGTTGTGG+TGG + chr4.2:17718783-17718802 None:intergenic 40.0%
AAGCCTTCAGCTGGAGAATT+AGG - chr4.2:17717642-17717661 MS.gene028327:CDS 45.0%
AGAAGAAGCAGAAGGAACCA+AGG - chr4.2:17717963-17717982 MS.gene028327:intron 45.0%
AGGAGTCCATATTGATCAGG+AGG + chr4.2:17718904-17718923 None:intergenic 45.0%
ATGTCTCTCTTGGGAACATG+GGG + chr4.2:17718303-17718322 None:intergenic 45.0%
ATGTGGAGAAGGAGATCTTG+AGG + chr4.2:17718757-17718776 None:intergenic 45.0%
GAAAGGAGAGAAGAAGCAGA+AGG - chr4.2:17717955-17717974 MS.gene028327:intron 45.0%
GAAATACAGGAACACCAAGG+TGG - chr4.2:17717925-17717944 MS.gene028327:intron 45.0%
GACCCATATGAGAAAGGAGT+AGG + chr4.2:17718727-17718746 None:intergenic 45.0%
GGAAATCAAAAGCCTTCAGC+TGG - chr4.2:17717633-17717652 MS.gene028327:CDS 45.0%
TCCTGTTGAGGAACATGGAA+GGG + chr4.2:17718939-17718958 None:intergenic 45.0%
TGGAAGGGACAATGTCTTGA+AGG + chr4.2:17718924-17718943 None:intergenic 45.0%
TGTGGAGAAGGAGATCTTGA+GGG + chr4.2:17718756-17718775 None:intergenic 45.0%
CACTTCCCTAAGAGGCAATG+CGG - chr4.2:17718666-17718685 MS.gene028327:intron 50.0%
CATTGCCTCTTAGGGAAGTG+GGG + chr4.2:17718666-17718685 None:intergenic 50.0%
CCACCTAATTCTCCAGCTGA+AGG + chr4.2:17717648-17717667 None:intergenic 50.0%
CCTTCAGCTGGAGAATTAGG+TGG - chr4.2:17717645-17717664 MS.gene028327:CDS 50.0%
GCATTGCCTCTTAGGGAAGT+GGG + chr4.2:17718667-17718686 None:intergenic 50.0%
GGGCAGGTTAAAGAAGAACC+AGG - chr4.2:17717774-17717793 MS.gene028327:CDS 50.0%
GTCCTGTTGAGGAACATGGA+AGG + chr4.2:17718940-17718959 None:intergenic 50.0%
GTTGGTCCTGTTGAGGAACA+TGG + chr4.2:17718944-17718963 None:intergenic 50.0%
TCAGCTGGAGAATTAGGTGG+TGG - chr4.2:17717648-17717667 MS.gene028327:CDS 50.0%
TCCCTTCCATGTTCCTCAAC+AGG - chr4.2:17718935-17718954 MS.gene028327:CDS 50.0%
TCCTCCAGCTTCAGAAGATG+AGG + chr4.2:17717715-17717734 None:intergenic 50.0%
! AGTTGTGGTTGGTCCTGTTG+AGG + chr4.2:17718951-17718970 None:intergenic 50.0%
!! TCCTCATCTTCTGAAGCTGG+AGG - chr4.2:17717711-17717730 MS.gene028327:CDS 50.0%
CGCATTGCCTCTTAGGGAAG+TGG + chr4.2:17718668-17718687 None:intergenic 55.0%
TGCAGCCGCATTGCCTCTTA+GGG + chr4.2:17718674-17718693 None:intergenic 55.0%
TTGCAGCCGCATTGCCTCTT+AGG + chr4.2:17718675-17718694 None:intergenic 55.0%
! AGGTGTTGTGGTGGTGCATG+TGG + chr4.2:17718774-17718793 None:intergenic 55.0%
! TGTGGTGGTGCATGTGGAGA+AGG + chr4.2:17718768-17718787 None:intergenic 55.0%
CCTCTTAGGGAAGTGGGGAC+AGG + chr4.2:17718661-17718680 None:intergenic 60.0%
CCTGTCCCCACTTCCCTAAG+AGG - chr4.2:17718658-17718677 MS.gene028327:intron 60.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 17717516 17718972 17717516 ID=MS.gene028327
chr4.2 mRNA 17717516 17718972 17717516 ID=MS.gene028327.t1;Parent=MS.gene028327
chr4.2 exon 17718671 17718972 17718671 ID=MS.gene028327.t1.exon1;Parent=MS.gene028327.t1
chr4.2 CDS 17718671 17718972 17718671 ID=cds.MS.gene028327.t1;Parent=MS.gene028327.t1
chr4.2 exon 17718405 17718554 17718405 ID=MS.gene028327.t1.exon2;Parent=MS.gene028327.t1
chr4.2 CDS 17718405 17718554 17718405 ID=cds.MS.gene028327.t1;Parent=MS.gene028327.t1
chr4.2 exon 17717516 17717939 17717516 ID=MS.gene028327.t1.exon3;Parent=MS.gene028327.t1
chr4.2 CDS 17717516 17717939 17717516 ID=cds.MS.gene028327.t1;Parent=MS.gene028327.t1
Gene Sequence

>MS.gene028327

ATGAGTTTCACTGAAAGTTTACAAGGAGGAAACATGGATCACTACAATTCACCACTTGCAACTTCTTTTGGAGTACTATCTCCTTCTTCATCAGAGGTTTTTTCTTCTGTTGATCAAGGAAATCAAAAGCCTTCAGCTGGAGAATTAGGTGGTGGTGATCAAACCCTTGCTACACTTAACTCATCTATCTCTAATTCCTCATCTTCTGAAGCTGGAGGAGTAGAAGAAGAAGATTCAGGAAAGAGAAAGAAAAATATTGGGCAGGTTAAAGAAGAACCAGGACAAGAAAGCTCTAAAAATGGGTAAATCTTTTCTTCCTCTTCTTTAACTTAATTGTCTCATCAAACCCTTGAGTTTAATTGATGGTGCAACATATGTAGTTATTATTACTTAATATATGTTTTGGAATGAAATACAGGAACACCAAGGTGGATAAGAAGAAAGGAGAGAAGAAGCAGAAGGAACCAAGGTTTGCTTTCATGACAAAGAGTGAAGTTGATCAGCTAGAAGATGGATACAGATGGAGAAAATATGGACAGAAAGCTGTCAAGAATAGTCCATACCCTAGGTAAATTATAAACAGTTGCATTCAATGGAAGATCCATTACCACTATTAAAACAAAGTCAATAATTTCACATAAAACTAAATCATATACTAACTGACCTATACTATACTCTATAGTCTATAGATCTGCTTGATGTAGATGTTAATTTGTAGTTAAATTCATCAAATTCAATTCAAATTTCTTTATACATATATTCAAATCTTATTTATTTATTTACACCCCATGTTCCCAAGAGAGACATTAATATATATTAATTGAATCATAGCTAGTAAAAACAAAAGGAAATGAAAGGAAAGTCAAAAGGAAATTAAAACCATGTTCAAATTACATCAAGTATACAACTCTAGCTAGGGTCTACTCTAGTTACCATCAAAACAATGGCTTGTGTATATTTCTTAGCATTGATTAAATTAAGATGAAAGTAATATGATGAATGAATTAATGAGAAATTGCATTTGATTTTGCAGGAGCTATTACAGGTGTACAACACAGAAATGTACAGTGAAAAAACGCGTAGAAAGATCATATGAAGACCCAACAACTGTGATAACAACATATGAAGGTCAGCATAATCATCCTGTCCCCACTTCCCTAAGAGGCAATGCGGCTGCAATGTTCACACCTTCTAATTTGCTATCTACACCTACTCCTTTCTCATATGGGTCAAACTTCCCTCAAGATCTCCTTCTCCACATGCACCACCACAACACCTTCAATATCACTCAACCAACAACACATACTACTAATACCGTTGCTGGTTCCATTTATTCACACAACAACATTAACAACTCACTTCTTCAACAATATCAACAACAACTTCCTCCTGATCAATATGGACTCCTTCAAGACATTGTCCCTTCCATGTTCCTCAACAGGACCAACCACAACTAA
Protein sequence

>MS.gene028327.t1

MSFTESLQGGNMDHYNSPLATSFGVLSPSSSEVFSSVDQGNQKPSAGELGGGDQTLATLNSSISNSSSSEAGGVEEEDSGKRKKNIGQVKEEPGQESSKNGNTKVDKKKGEKKQKEPRFAFMTKSEVDQLEDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCTVKKRVERSYEDPTTVITTYEGQHNHPVPTSLRGNAAAMFTPSNLLSTPTPFSYGSNFPQDLLLHMHHHNTFNITQPTTHTTNTVAGSIYSHNNINNSLLQQYQQQLPPDQYGLLQDIVPSMFLNRTNHN