AlfalfaGEDB | MS.gene028506

M. sativa cultivar XinJiangDaYe / MS.gene028506

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030246 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28 PF00139.22

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene028506.t1	AES90560.1	91.5	661	55	1	1	661	1	660	0.00E+00	1226.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene028506.t1	Q9LXA5	48.6	648	304	17	21	655	9	640	1.8e-146	521.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene028506.t1	G7JU26	91.5	661	55	1	1	661	1	660	0.0e+00	1226.8

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene028506.t1	MTR_4g093070	91.528	661	55	1	1	661	1	660	1210
MS.gene028506.t1	MTR_4g093110	63.242	691	245	7	1	691	1	682	858
MS.gene028506.t1	MTR_4g093080	64.159	678	212	11	23	683	19	682	844
MS.gene028506.t1	MTR_4g093140	62.391	686	249	6	1	686	1	677	832
MS.gene028506.t1	MTR_7g115740	47.120	677	308	15	8	651	1	660	590
MS.gene028506.t1	MTR_8g068050	48.702	655	310	12	2	643	7	648	585
MS.gene028506.t1	MTR_4g093050	47.597	645	309	13	22	649	16	648	578
MS.gene028506.t1	MTR_4g093040	50.392	637	283	13	24	639	25	649	563
MS.gene028506.t1	MTR_7g116130	47.778	630	294	14	18	624	13	630	562
MS.gene028506.t1	MTR_8g067930	46.656	643	308	13	14	638	4	629	553

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene028506.t1	AT5G10530	48.576	632	298	16	20	638	8	625	0.0	546
MS.gene028506.t1	AT5G65600	46.655	583	283	11	72	638	76	646	9.03e-168	497
MS.gene028506.t1	AT5G55830	38.766	632	325	16	47	633	41	655	9.96e-127	391
MS.gene028506.t1	AT3G53810	38.758	596	325	12	59	630	50	629	1.00e-121	378
MS.gene028506.t1	AT2G37710	36.982	603	325	14	59	630	50	628	7.49e-116	363
MS.gene028506.t1	AT4G02410	36.000	625	348	16	46	630	24	636	1.24e-115	362
MS.gene028506.t1	AT3G55550	36.617	609	332	18	62	641	52	635	5.69e-115	361
MS.gene028506.t1	AT5G06740	38.806	603	319	20	73	656	71	642	1.05e-113	357
MS.gene028506.t1	AT5G06740	38.806	603	319	20	73	656	83	654	1.40e-113	357
MS.gene028506.t1	AT4G02420	36.047	602	334	14	59	630	51	631	2.70e-109	345

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Find 138 sgRNAs with CRISPR-Local

Find 166 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCCATAATAAACCTTA+AGG	0.462701	4.1:-20287704	MS.gene028506:CDS
AAAAGCAAGTAACATCATGT+TGG	0.549295	4.1:-20287920	MS.gene028506:CDS
AAAATCAAAGTTTGGTTAAA+TGG	0.081227	4.1:-20288032	MS.gene028506:CDS
AAAATCTAAACTGGAGTTGA+AGG	0.425839	4.1:+20288560	None:intergenic
AAACTAGGTCAAGGAGGATT+TGG	0.329079	4.1:-20288282	MS.gene028506:CDS
AAAGAAAGTGAAGAGGAAGA+TGG	0.534581	4.1:-20288411	MS.gene028506:CDS
AAATCAAAGTTTGGTTAAAT+GGG	0.307615	4.1:-20288031	MS.gene028506:CDS
AACAAAACCCATCATTCAGA+TGG	0.537584	4.1:-20289029	MS.gene028506:CDS
AACCCAATGGTTCACTAGCT+TGG	0.430519	4.1:-20288793	MS.gene028506:CDS
AAGAGAAGTCCTACCTGATT+GGG	0.447613	4.1:-20288649	MS.gene028506:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGCAAGTAACATCATGT+TGG	-	chr4.1:20288709-20288728	MS.gene028506:CDS	30.0%
AAAATCTAAACTGGAGTTGA+AGG	+	chr4.1:20288072-20288091	None:intergenic	30.0%
AATTCAAACACAAACTCTTC+TGG	-	chr4.1:20289283-20289302	MS.gene028506:CDS	30.0%
ATCAAGTGTATGATGATTGT+TGG	-	chr4.1:20289058-20289077	MS.gene028506:CDS	30.0%
ATTCAAACACAAACTCTTCT+GGG	-	chr4.1:20289284-20289303	MS.gene028506:CDS	30.0%
CTTATTGAAGGCCTATTATT+AGG	+	chr4.1:20289106-20289125	None:intergenic	30.0%
GAGTTGTGAATGAATTCAAT+GGG	+	chr4.1:20289210-20289229	None:intergenic	30.0%
GTTAGATATACAATAGCTAG+AGG	-	chr4.1:20288623-20288642	MS.gene028506:CDS	30.0%
TATCAGAAGATTCACATCAA+GGG	-	chr4.1:20288426-20288445	MS.gene028506:CDS	30.0%
TCAGAGTTTAATGCAAAACT+TGG	-	chr4.1:20288734-20288753	MS.gene028506:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.1	gene	20287285	20289366	20287285	ID=MS.gene028506
chr4.1	mRNA	20287285	20289366	20287285	ID=MS.gene028506.t1;Parent=MS.gene028506
chr4.1	exon	20287285	20289366	20287285	ID=MS.gene028506.t1.exon1;Parent=MS.gene028506.t1
chr4.1	CDS	20287285	20289366	20287285	ID=cds.MS.gene028506.t1;Parent=MS.gene028506.t1

Gene Sequence

>MS.gene028506

ATGGCATCGTCATGCAACTACATGAAAACTCATCGTTTTGCTTTCTTTCATGTAACACTATCATTCTTGCTTCTTGTAACATTTCATGCAGCTCCGTTATCTTTCAACTACGATGACAACCTCAGTAGCGACAAAACACGTGCTTTAAATTTTTCAGGTGATGTCTACCATGACAACCAAGTCCTCCAACTCACGAGGTACGAGAAAGACAGTCTAGGTAGAGTCACATATTCAAAACTATTTCATCTTTGGGACATAAATACAAGTGAAGTCACAGATTTTACTACTCGTTTCTCATTTACTATCAACACCCTCAACAAAACCCATCATTCAGATGGAATCACCTTCTATTTGGCACACCCCAATTTTCCACTACCTGTTCCAAAAGATGGAAGTGGTATTGGTCTCATGAGTAGCGTTCAATTAGCTACTCCAAATTACACAAAAGAAAATCCCTTTGTGGCTGTGGAATTTGATACCTTTGTTAATACATGGGATCCTACATATGATCATGTGGGGATTGATGTTAATTCAATCAGCTCTTCTTACACAACCCAATGGTTCACTAGCTTGGACGAAAGAGGATATGATGTTGATGTTAGTTACAATTCTATGTCAAACAATTTAAGTGTCACCTTCACAGGTTATCGAGATAACAACACAATCGAACAGAATTTGTTTCAAATTGTCAATCTAAGAGAAGTCCTACCTGATTGGGTTGAATTTGGCTTCACTTCAGCAACAGGGTTGTTTTGGGGGGAGGAACATACTCTTAGGTCATGGTCCTTCAACTCCAGTTTAGATTTTGAAGCACACAAAGACGAAGAAAAAACAGGACCTGTTATAGGACTAGCATTGGGATTAGGAATTGGTGGATTCATTTTGATTGGTGTATTGAGTCTTATTTCAGTTGTGTTGTGGAAGAGGTGGAAGAAAGAAAGTGAAGAGGAAGATGGTGAATTTGAAGAGTACATGGGAGAGGATTTTGGAAGAGGGACAGGACCAAAGAAGTATACATATGCAGAATTAGCACAAGCAGCTAATAATTTCAAAGATGAACATAAACTAGGTCAAGGAGGATTTGGAGGTGTTTATAGGGGTTTTCTTAAAGACACAAACTCTTATGTTGCTATTAAGAGGGTATCAGAAGATTCACATCAAGGGATAAAGGAGTTCGCATCAGAAGTAAAAACTATTAGCAAGTTAAGGCATCGAAATCTAGTGCAATTGATTGGTTGGAGTCATGAAAGAAAAAGGCTTTTACTTGTATATGAGTACATGCCAAATGGAAGTTTAGACATTCATCTTTTCAAAAATCAAAGTTTGGTTAAATGGGGTGTTAGATATACAATAGCTAGAGGCTTGGCTTCTGCATTGTTATATTTGCATGAAGAATGGGAACAATGTGTTGTACATAGAGACATAAAAGCAAGTAACATCATGTTGGATTCAGAGTTTAATGCAAAACTTGGAGATTTTGGTTTAGCAAGGTTTGTGGACCATGCAAAAGGTGCACAAACTACAGCTTTAGCAGGGACTTTGGGATACATGGCTCCAGAATGTGCTACCACAGGAAGAGCTAGTAAAGAAACAGATGTGTATAGTTTTGGAATAGTTACTTTAGAGATAGCTTGTGGAAGAAAACCCATAATAAACCTTAAGGCTCAAGAAAATAAAATACATATTGTTGAGTGGGTTTGGGGGCTTTATGGAAGAAGGAGAATTCTTGAAGCAGTTGATCCAAGACTAGATGGAGATTTTGAAGAGGAGCAAATCAAGTGTATGATGATTGTTGGTCTTTGGTGTGCTCATCCTGATCCTAATAATAGGCCTTCAATAAGACAAGCTATTCAAGTGCTTAATTTTGAAGCTCCAGTGCCTAATCTTTCATCAAGTATGCCTGTACCAACATATCTTGAGGGCCCATTGAATTCATTCACAACTCCATTTAGCATAAGTGGTTCAGAGAAAGGTCAAAGCAAGAATATAATAAACTTTAATTCAAACACAAACTCTTCTGGGTTTACTACTACAACTTCTGAGGATGTTTCTCCCTCTATGTCGCTTCTCTATTCTAGATAA

Protein sequence

>MS.gene028506.t1

MASSCNYMKTHRFAFFHVTLSFLLLVTFHAAPLSFNYDDNLSSDKTRALNFSGDVYHDNQVLQLTRYEKDSLGRVTYSKLFHLWDINTSEVTDFTTRFSFTINTLNKTHHSDGITFYLAHPNFPLPVPKDGSGIGLMSSVQLATPNYTKENPFVAVEFDTFVNTWDPTYDHVGIDVNSISSSYTTQWFTSLDERGYDVDVSYNSMSNNLSVTFTGYRDNNTIEQNLFQIVNLREVLPDWVEFGFTSATGLFWGEEHTLRSWSFNSSLDFEAHKDEEKTGPVIGLALGLGIGGFILIGVLSLISVVLWKRWKKESEEEDGEFEEYMGEDFGRGTGPKKYTYAELAQAANNFKDEHKLGQGGFGGVYRGFLKDTNSYVAIKRVSEDSHQGIKEFASEVKTISKLRHRNLVQLIGWSHERKRLLLVYEYMPNGSLDIHLFKNQSLVKWGVRYTIARGLASALLYLHEEWEQCVVHRDIKASNIMLDSEFNAKLGDFGLARFVDHAKGAQTTALAGTLGYMAPECATTGRASKETDVYSFGIVTLEIACGRKPIINLKAQENKIHIVEWVWGLYGRRRILEAVDPRLDGDFEEEQIKCMMIVGLWCAHPDPNNRPSIRQAIQVLNFEAPVPNLSSSMPVPTYLEGPLNSFTTPFSISGSEKGQSKNIINFNSNTNSSGFTTTTSEDVSPSMSLLYSR