AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene028510

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene028510.t1 MTR_4g093030 100.000 61 0 0 1 61 1 61 4.75e-38 124
MS.gene028510.t1 MTR_5g066960 78.689 61 13 0 1 61 1 61 8.42e-31 102
MS.gene028510.t1 MTR_5g031000 83.333 60 10 0 1 60 1 60 1.57e-30 106
MS.gene028510.t1 MTR_5g031000 83.333 60 10 0 1 60 1 60 1.94e-30 107
MS.gene028510.t1 MTR_2g009890 83.333 60 10 0 1 60 1 60 1.04e-29 105
MS.gene028510.t1 MTR_5g066180 70.000 60 18 0 1 60 1 60 3.49e-25 93.2
MS.gene028510.t1 MTR_0003s0590 70.000 60 18 0 1 60 1 60 4.29e-25 93.6
MS.gene028510.t1 MTR_1g053070 68.333 60 19 0 1 60 1 60 5.66e-25 93.2
MS.gene028510.t1 MTR_3g005530 68.333 60 19 0 1 60 1 60 1.23e-23 89.0
MS.gene028510.t1 MTR_3g452380 66.667 60 20 0 1 60 16 75 2.04e-23 89.0
MS.gene028510.t1 MTR_2g461710 61.667 60 23 0 1 60 1 60 2.44e-23 84.0
MS.gene028510.t1 MTR_2g017865 68.333 60 19 0 1 60 16 75 3.26e-23 88.6
MS.gene028510.t1 MTR_4g093970 66.667 60 20 0 1 60 27 86 4.05e-23 88.2
MS.gene028510.t1 MTR_3g088615 63.333 60 22 0 1 60 1 60 4.96e-23 86.3
MS.gene028510.t1 MTR_5g032520 67.797 59 19 0 1 59 1 59 5.51e-23 87.4
MS.gene028510.t1 MTR_5g032150 67.797 59 19 0 1 59 1 59 5.73e-23 87.4
MS.gene028510.t1 MTR_8g087860 66.667 60 20 0 1 60 17 76 6.09e-23 87.8
MS.gene028510.t1 MTR_7g075870 68.333 60 19 0 1 60 1 60 8.03e-23 86.7
MS.gene028510.t1 MTR_7g075870 68.333 60 19 0 1 60 1 60 8.76e-23 86.7
MS.gene028510.t1 MTR_4g036050 64.407 59 21 0 1 59 1 59 8.99e-23 85.5
MS.gene028510.t1 MTR_5g046870 64.407 59 21 0 1 59 1 59 1.00e-22 84.0
MS.gene028510.t1 MTR_4g109830 62.712 59 22 0 1 59 1 59 1.10e-22 86.7
MS.gene028510.t1 MTR_4g036050 64.407 59 21 0 1 59 1 59 1.19e-22 85.5
MS.gene028510.t1 MTR_4g036050 64.407 59 21 0 1 59 1 59 1.27e-22 85.5
MS.gene028510.t1 MTR_4g102530 66.667 60 20 0 1 60 1 60 1.77e-22 85.5
MS.gene028510.t1 MTR_4g036050 64.407 59 21 0 1 59 1 59 1.87e-22 85.5
MS.gene028510.t1 MTR_8g033220 63.636 66 24 0 1 66 1 66 2.37e-22 85.9
MS.gene028510.t1 MTR_8g033220 63.636 66 24 0 1 66 1 66 2.83e-22 85.5
MS.gene028510.t1 MTR_1g038300 69.492 59 18 0 1 59 1 59 3.48e-22 85.5
MS.gene028510.t1 MTR_5g046790 61.667 60 23 0 1 60 1 60 3.93e-22 84.7
MS.gene028510.t1 MTR_6g464720 58.571 70 29 0 1 70 1 70 5.03e-22 85.5
MS.gene028510.t1 MTR_1g101970 63.333 60 22 0 1 60 1 60 6.21e-22 84.0
MS.gene028510.t1 MTR_3g113030 67.797 59 19 0 1 59 1 59 7.10e-22 84.7
MS.gene028510.t1 MTR_8g097090 63.333 60 22 0 1 60 1 60 9.73e-22 84.3
MS.gene028510.t1 MTR_8g066260 61.667 60 23 0 1 60 1 60 1.08e-21 84.3
MS.gene028510.t1 MTR_7g016630 63.333 60 22 0 1 60 1 60 1.14e-21 84.7
MS.gene028510.t1 MTR_7g016600 61.667 60 23 0 1 60 1 60 2.02e-21 84.0
MS.gene028510.t1 MTR_8g033270 66.102 59 20 0 1 59 1 59 2.45e-21 83.6
MS.gene028510.t1 MTR_7g075850 65.000 60 21 0 1 60 1 60 2.83e-21 83.6
MS.gene028510.t1 MTR_4g109810 60.000 60 24 0 1 60 1 60 4.03e-21 82.8
MS.gene028510.t1 MTR_6g015975 63.333 60 22 0 1 60 1 60 6.18e-21 82.4
MS.gene028510.t1 MTR_5g021270 61.667 60 23 0 1 60 1 60 6.38e-21 82.0
MS.gene028510.t1 MTR_5g021270 61.667 60 23 0 1 60 1 60 6.85e-21 82.0
MS.gene028510.t1 MTR_3g084980 58.730 63 26 0 1 63 1 63 7.62e-21 82.0
MS.gene028510.t1 MTR_1g029670 56.667 60 26 0 1 60 1 60 2.61e-20 79.3
MS.gene028510.t1 MTR_1g041615 61.818 55 21 0 13 67 17 71 1.06e-19 76.6
MS.gene028510.t1 MTR_3g102570 57.143 63 27 0 1 63 1 63 4.37e-19 78.6
MS.gene028510.t1 MTR_4g084740 51.429 70 34 0 1 70 1 70 5.35e-19 78.6
MS.gene028510.t1 MTR_8g051580 53.448 58 27 0 1 58 1 58 5.26e-16 68.2
MS.gene028510.t1 MTR_1g063160 51.724 58 28 0 1 58 1 58 6.01e-16 68.2
MS.gene028510.t1 MTR_1g054265 53.448 58 27 0 1 58 1 58 6.65e-16 67.8
MS.gene028510.t1 MTR_4g094632 47.143 70 35 1 1 68 1 70 7.87e-16 67.4
MS.gene028510.t1 MTR_8g079502 53.448 58 27 0 1 58 1 58 7.89e-16 67.8
MS.gene028510.t1 MTR_1g047550 53.448 58 27 0 1 58 1 58 1.86e-15 67.0
MS.gene028510.t1 MTR_2g105290 52.727 55 26 0 1 55 11 65 8.58e-15 65.1
MS.gene028510.t1 MTR_4g094638 48.333 60 31 0 1 60 1 60 1.36e-14 64.7
MS.gene028510.t1 MTR_4g108720 54.717 53 24 0 1 53 1 53 1.56e-14 66.2
MS.gene028510.t1 MTR_4g131030 50.000 58 29 0 1 58 1 58 1.59e-14 65.1
MS.gene028510.t1 MTR_3g052920 54.386 57 26 0 2 58 9 65 1.90e-14 65.1
MS.gene028510.t1 MTR_5g053390 49.231 65 33 0 2 66 9 73 3.05e-14 64.7
MS.gene028510.t1 MTR_8g086290 53.704 54 25 0 2 55 12 65 3.20e-14 63.5
MS.gene028510.t1 MTR_5g041650 54.717 53 24 0 1 53 38 90 3.34e-14 65.5
MS.gene028510.t1 MTR_5g045560 46.970 66 35 0 1 66 8 73 7.84e-14 63.5
MS.gene028510.t1 MTR_2g085280 49.123 57 29 0 2 58 9 65 9.95e-14 63.2
MS.gene028510.t1 MTR_2g085250 49.123 57 29 0 2 58 9 65 9.95e-14 63.2
MS.gene028510.t1 MTR_2g030740 50.877 57 28 0 2 58 9 65 1.05e-13 63.2
MS.gene028510.t1 MTR_1g012570 47.692 65 34 0 2 66 9 73 1.08e-13 63.2
MS.gene028510.t1 MTR_1g075600 46.154 65 35 0 2 66 9 73 1.30e-13 62.8
MS.gene028510.t1 MTR_8g046350 50.000 58 29 0 1 58 1 58 1.57e-13 61.6
MS.gene028510.t1 MTR_1g077360 49.123 57 29 0 2 58 9 65 1.85e-13 62.4
MS.gene028510.t1 MTR_3g052870 49.123 57 29 0 2 58 9 65 2.20e-13 62.0
MS.gene028510.t1 MTR_1g105910 46.154 65 35 0 2 66 9 73 2.38e-13 62.4
MS.gene028510.t1 MTR_5g055100 49.123 57 29 0 2 58 9 65 2.42e-13 62.4
MS.gene028510.t1 MTR_1g105920 49.123 57 29 0 2 58 9 65 2.72e-13 62.0
MS.gene028510.t1 MTR_8g043650 49.123 57 29 0 2 58 9 65 2.72e-13 62.0
MS.gene028510.t1 MTR_7g028448 60.976 41 16 0 15 55 25 65 3.56e-13 60.8
MS.gene028510.t1 MTR_4g036915 60.976 41 16 0 15 55 25 65 3.56e-13 60.8
MS.gene028510.t1 MTR_1g106070 46.154 65 35 0 2 66 9 73 5.58e-13 60.5
MS.gene028510.t1 MTR_2g093190 47.368 57 30 0 2 58 9 65 5.61e-13 61.2
MS.gene028510.t1 MTR_3g030770 47.368 57 30 0 2 58 9 65 7.20e-13 60.8
MS.gene028510.t1 MTR_1g108510 47.368 57 30 0 2 58 9 65 7.20e-13 60.8
MS.gene028510.t1 MTR_0121s0100 42.424 66 38 0 2 67 9 74 2.08e-12 58.2
MS.gene028510.t1 MTR_1g108580 47.368 57 30 0 2 58 9 65 3.74e-12 58.9
MS.gene028510.t1 MTR_3g080940 44.828 58 32 0 1 58 8 65 3.95e-12 58.5
MS.gene028510.t1 MTR_6g005440 52.941 51 24 0 1 51 1 51 8.11e-12 58.5
MS.gene028510.t1 MTR_6g018920 53.061 49 23 0 1 49 1 49 1.50e-11 57.8
MS.gene028510.t1 MTR_0121s0080 44.068 59 31 1 2 58 7 65 2.66e-11 56.6
MS.gene028510.t1 MTR_3g067875 46.429 56 30 0 11 66 1 56 6.46e-11 52.8
MS.gene028510.t1 MTR_4g127140 52.727 55 26 0 1 55 11 65 6.75e-11 55.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene028510.t1 AT2G14210 76.056 71 17 0 1 71 1 71 3.74e-32 111
MS.gene028510.t1 AT2G14210 76.056 71 17 0 1 71 1 71 5.82e-32 110
MS.gene028510.t1 AT4G37940 83.333 60 10 0 1 60 1 60 2.38e-30 105
MS.gene028510.t1 AT4G37940 83.333 60 10 0 1 60 1 60 2.98e-30 105
MS.gene028510.t1 AT4G37940 83.333 60 10 0 1 60 1 60 3.22e-30 106
MS.gene028510.t1 AT3G57230 76.667 60 14 0 1 60 1 60 8.44e-29 100
MS.gene028510.t1 AT3G57230 76.667 60 14 0 1 60 1 60 4.83e-28 100
MS.gene028510.t1 AT3G57230 76.667 60 14 0 1 60 1 60 4.83e-28 100
MS.gene028510.t1 AT2G22630 78.333 60 13 0 1 60 1 60 9.50e-28 99.8
MS.gene028510.t1 AT2G22630 78.333 60 13 0 1 60 1 60 9.50e-28 99.8
MS.gene028510.t1 AT3G57390 74.576 59 15 0 1 59 1 59 1.37e-26 96.7
MS.gene028510.t1 AT3G57390 74.576 59 15 0 1 59 1 59 2.85e-26 96.7
MS.gene028510.t1 AT5G13790 68.333 60 19 0 1 60 1 60 1.61e-24 92.4
MS.gene028510.t1 AT5G13790 68.333 60 19 0 1 60 1 60 1.75e-24 92.4
MS.gene028510.t1 AT5G23260 67.213 61 20 0 1 61 1 61 8.77e-24 89.7
MS.gene028510.t1 AT2G45660 70.000 60 18 0 1 60 1 60 9.75e-24 87.8
MS.gene028510.t1 AT3G58780 65.574 61 21 0 1 61 16 76 9.89e-24 89.7
MS.gene028510.t1 AT4G09960 68.333 60 19 0 1 60 1 60 1.02e-23 89.0
MS.gene028510.t1 AT4G09960 68.333 60 19 0 1 60 1 60 1.30e-23 89.0
MS.gene028510.t1 AT4G09960 68.333 60 19 0 1 60 2 61 1.31e-23 89.4
MS.gene028510.t1 AT4G09960 68.333 60 19 0 1 60 11 70 1.54e-23 89.4
MS.gene028510.t1 AT5G23260 67.213 61 20 0 1 61 1 61 1.91e-23 89.4
MS.gene028510.t1 AT5G51870 67.213 61 20 0 1 61 1 61 1.98e-23 87.4
MS.gene028510.t1 AT4G09960 68.333 60 19 0 1 60 27 86 2.40e-23 89.0
MS.gene028510.t1 AT2G45660 70.000 60 18 0 1 60 1 60 3.41e-23 87.8
MS.gene028510.t1 AT5G51870 67.213 61 20 0 1 61 1 61 3.55e-23 87.4
MS.gene028510.t1 AT5G51860 68.333 60 19 0 1 60 1 60 3.55e-23 87.4
MS.gene028510.t1 AT5G23260 67.213 61 20 0 1 61 17 77 3.78e-23 88.6
MS.gene028510.t1 AT5G23260 67.213 61 20 0 1 61 17 77 4.02e-23 88.6
MS.gene028510.t1 AT5G51870 67.213 61 20 0 1 61 24 84 4.22e-23 87.0
MS.gene028510.t1 AT4G22950 66.667 60 20 0 1 60 1 60 4.26e-23 86.3
MS.gene028510.t1 AT5G62165 66.667 60 20 0 1 60 1 60 4.42e-23 84.7
MS.gene028510.t1 AT2G22540 68.333 60 19 0 1 60 1 60 4.60e-23 87.8
MS.gene028510.t1 AT2G22540 68.333 60 19 0 1 60 1 60 4.60e-23 87.8
MS.gene028510.t1 AT5G51870 67.213 61 20 0 1 61 1 61 5.04e-23 87.4
MS.gene028510.t1 AT4G24540 63.934 61 22 0 1 61 1 61 5.09e-23 87.4
MS.gene028510.t1 AT5G51860 68.333 60 19 0 1 60 1 60 5.09e-23 87.0
MS.gene028510.t1 AT4G09960 68.333 60 19 0 1 60 96 155 5.77e-23 89.4
MS.gene028510.t1 AT3G58780 65.000 60 21 0 1 60 16 75 6.57e-23 87.8
MS.gene028510.t1 AT5G51870 67.213 61 20 0 1 61 11 71 6.74e-23 87.4
MS.gene028510.t1 AT2G42830 65.000 60 21 0 1 60 16 75 7.76e-23 87.4
MS.gene028510.t1 AT4G11880 68.333 60 19 0 1 60 1 60 8.24e-23 85.9
MS.gene028510.t1 AT4G11880 68.333 60 19 0 1 60 1 60 8.24e-23 85.9
MS.gene028510.t1 AT3G58780 65.000 60 21 0 1 60 22 81 8.27e-23 87.4
MS.gene028510.t1 AT2G42830 65.000 60 21 0 1 60 16 75 8.65e-23 87.4
MS.gene028510.t1 AT3G54340 62.500 64 24 0 1 64 1 64 9.82e-23 87.0
MS.gene028510.t1 AT4G18960 67.797 59 19 0 2 60 18 76 9.88e-23 87.4
MS.gene028510.t1 AT5G62165 66.667 60 20 0 1 60 1 60 1.00e-22 85.1
MS.gene028510.t1 AT5G62165 66.667 60 20 0 1 60 1 60 1.00e-22 85.1
MS.gene028510.t1 AT5G62165 66.667 60 20 0 1 60 1 60 1.00e-22 85.1
MS.gene028510.t1 AT4G22950 66.667 60 20 0 1 60 1 60 1.04e-22 86.7
MS.gene028510.t1 AT4G22950 66.667 60 20 0 1 60 1 60 1.04e-22 86.7
MS.gene028510.t1 AT3G58780 65.000 60 21 0 1 60 16 75 1.08e-22 87.4
MS.gene028510.t1 AT3G58780 65.000 60 21 0 1 60 16 75 1.19e-22 87.8
MS.gene028510.t1 AT5G62165 66.667 60 20 0 1 60 1 60 1.19e-22 84.7
MS.gene028510.t1 AT5G62165 66.667 60 20 0 1 60 1 60 1.19e-22 84.7
MS.gene028510.t1 AT5G62165 66.667 60 20 0 1 60 1 60 1.19e-22 84.7
MS.gene028510.t1 AT5G62165 66.667 60 20 0 1 60 1 60 1.19e-22 84.7
MS.gene028510.t1 AT5G62165 66.667 60 20 0 1 60 1 60 1.19e-22 84.7
MS.gene028510.t1 AT4G11880 68.333 60 19 0 1 60 1 60 1.26e-22 86.3
MS.gene028510.t1 AT4G11880 68.333 60 19 0 1 60 1 60 1.26e-22 86.3
MS.gene028510.t1 AT2G22540 71.429 56 16 0 1 56 1 56 2.01e-22 86.3
MS.gene028510.t1 AT5G62165 66.667 60 20 0 1 60 1 60 2.22e-22 85.1
MS.gene028510.t1 AT5G62165 66.667 60 20 0 1 60 1 60 2.22e-22 85.1
MS.gene028510.t1 AT5G62165 66.667 60 20 0 1 60 1 60 2.57e-22 85.5
MS.gene028510.t1 AT5G62165 66.667 60 20 0 1 60 1 60 2.57e-22 85.5
MS.gene028510.t1 AT5G62165 66.667 60 20 0 1 60 1 60 2.57e-22 85.5
MS.gene028510.t1 AT5G20240 66.667 57 19 0 1 57 1 57 5.90e-22 82.8
MS.gene028510.t1 AT2G03710 61.667 60 23 0 1 60 1 60 7.32e-22 83.6
MS.gene028510.t1 AT5G60910 62.712 59 22 0 1 59 1 59 7.41e-22 84.7
MS.gene028510.t1 AT1G26310 61.667 60 23 0 1 60 1 60 8.20e-22 85.1
MS.gene028510.t1 AT3G30260 54.930 71 32 0 1 71 1 71 9.08e-22 84.7
MS.gene028510.t1 AT2G45650 66.102 59 20 0 1 59 1 59 1.14e-21 84.3
MS.gene028510.t1 AT1G24260 60.317 63 25 0 1 63 1 63 1.17e-21 84.3
MS.gene028510.t1 AT5G20240 66.667 57 19 0 1 57 1 57 1.25e-21 83.6
MS.gene028510.t1 AT5G15800 63.333 60 22 0 1 60 1 60 1.26e-21 84.3
MS.gene028510.t1 AT5G15800 60.317 63 25 0 1 63 1 63 1.67e-21 84.3
MS.gene028510.t1 AT3G61120 62.712 59 22 0 1 59 1 59 2.54e-21 83.6
MS.gene028510.t1 AT3G02310 61.667 60 23 0 1 60 1 60 2.88e-21 82.4
MS.gene028510.t1 AT1G69120 58.333 60 25 0 1 60 1 60 3.28e-21 82.8
MS.gene028510.t1 AT1G24260 60.317 63 25 0 1 63 1 63 3.62e-21 83.2
MS.gene028510.t1 AT1G24260 60.317 63 25 0 1 63 1 63 3.72e-21 83.2
MS.gene028510.t1 AT5G10140 55.714 70 31 0 1 70 1 70 3.80e-21 81.6
MS.gene028510.t1 AT1G71692 61.017 59 23 0 1 59 1 59 4.20e-21 82.4
MS.gene028510.t1 AT5G10140 55.714 70 31 0 1 70 1 70 4.64e-21 81.6
MS.gene028510.t1 AT5G10140 55.714 70 31 0 1 70 1 70 4.88e-21 80.9
MS.gene028510.t1 AT2G03710 61.667 60 23 0 1 60 1 60 5.66e-21 82.8
MS.gene028510.t1 AT1G69120 58.333 60 25 0 1 60 1 60 6.40e-21 82.8
MS.gene028510.t1 AT2G03710 61.667 60 23 0 1 60 1 60 6.74e-21 82.8
MS.gene028510.t1 AT3G02310 58.730 63 26 0 1 63 1 63 7.27e-21 82.4
MS.gene028510.t1 AT5G10140 57.576 66 28 0 1 66 1 66 8.26e-21 80.9
MS.gene028510.t1 AT5G65060 54.286 70 32 0 1 70 1 70 2.34e-20 80.1
MS.gene028510.t1 AT5G65060 53.521 71 33 0 1 71 1 71 2.35e-20 79.7
MS.gene028510.t1 AT5G65060 56.061 66 29 0 1 66 1 66 3.26e-20 79.3
MS.gene028510.t1 AT5G65070 61.017 59 23 0 1 59 1 59 3.46e-20 78.2
MS.gene028510.t1 AT5G65070 54.286 70 32 0 1 70 1 70 5.49e-20 79.0
MS.gene028510.t1 AT5G65070 61.017 59 23 0 1 59 1 59 1.02e-19 78.6
MS.gene028510.t1 AT5G65070 53.521 71 33 0 1 71 1 71 1.19e-19 79.0
MS.gene028510.t1 AT5G65070 61.017 59 23 0 1 59 1 59 1.40e-19 78.6
MS.gene028510.t1 AT5G65050 51.429 70 34 0 1 70 1 70 5.75e-19 75.9
MS.gene028510.t1 AT5G65050 51.429 70 34 0 1 70 1 70 9.69e-19 75.5
MS.gene028510.t1 AT5G65050 51.429 70 34 0 1 70 1 70 9.85e-19 75.5
MS.gene028510.t1 AT5G65050 51.429 70 34 0 1 70 1 70 1.06e-18 75.9
MS.gene028510.t1 AT1G22130 66.667 54 18 0 1 54 1 54 1.06e-18 77.8
MS.gene028510.t1 AT1G77980 51.429 70 34 0 1 70 1 70 1.49e-18 77.4
MS.gene028510.t1 AT5G65080 61.017 59 23 0 1 59 8 66 1.65e-18 75.1
MS.gene028510.t1 AT5G65080 61.017 59 23 0 1 59 8 66 2.21e-18 75.1
MS.gene028510.t1 AT1G31140 56.667 60 26 0 1 60 1 60 6.74e-18 73.9
MS.gene028510.t1 AT1G31140 56.667 60 26 0 1 60 1 60 7.67e-18 73.9
MS.gene028510.t1 AT1G77080 55.224 67 30 0 1 67 1 67 2.92e-17 70.9
MS.gene028510.t1 AT1G77080 55.224 67 30 0 1 67 1 67 4.51e-17 71.2
MS.gene028510.t1 AT1G72350 52.239 67 32 0 2 68 43 109 8.77e-17 71.2
MS.gene028510.t1 AT1G77080 54.286 70 32 0 1 70 1 70 2.56e-16 68.9
MS.gene028510.t1 AT1G77080 54.286 70 32 0 1 70 1 70 2.80e-16 68.9
MS.gene028510.t1 AT1G77080 54.286 70 32 0 1 70 1 70 3.19e-16 69.3
MS.gene028510.t1 AT3G66656 50.000 58 29 0 1 58 1 58 5.10e-16 68.2
MS.gene028510.t1 AT1G77080 54.286 70 32 0 1 70 1 70 7.49e-16 68.9
MS.gene028510.t1 AT2G34440 50.000 58 29 0 1 58 1 58 1.25e-15 67.4
MS.gene028510.t1 AT1G18750 48.485 66 32 1 1 66 1 64 2.51e-15 68.6
MS.gene028510.t1 AT1G18750 48.485 66 32 1 1 66 1 64 2.55e-15 68.6
MS.gene028510.t1 AT1G18750 48.485 66 32 1 1 66 1 64 2.67e-15 68.6
MS.gene028510.t1 AT1G77950 57.407 54 23 0 1 54 1 54 3.79e-15 67.4
MS.gene028510.t1 AT1G77950 57.407 54 23 0 1 54 1 54 3.79e-15 67.4
MS.gene028510.t1 AT1G77950 57.407 54 23 0 1 54 1 54 3.79e-15 67.4
MS.gene028510.t1 AT1G77950 57.407 54 23 0 1 54 1 54 3.79e-15 67.4
MS.gene028510.t1 AT1G69540 56.604 53 23 0 1 53 1 53 9.42e-15 67.0
MS.gene028510.t1 AT1G69540 56.604 53 23 0 1 53 1 53 1.09e-14 67.0
MS.gene028510.t1 AT2G03060 54.717 53 24 0 1 53 1 53 2.06e-14 66.2
MS.gene028510.t1 AT2G03060 54.717 53 24 0 1 53 1 53 2.06e-14 66.2
MS.gene028510.t1 AT2G03060 54.717 53 24 0 1 53 1 53 2.06e-14 66.2
MS.gene028510.t1 AT4G37435 47.222 72 35 2 1 69 1 72 2.37e-14 64.3
MS.gene028510.t1 AT2G03060 54.717 53 24 0 1 53 1 53 3.24e-14 65.5
MS.gene028510.t1 AT2G26320 52.830 53 25 0 1 53 17 69 9.52e-14 60.8
MS.gene028510.t1 AT1G01530 48.276 58 30 0 1 58 6 63 4.01e-13 61.6
MS.gene028510.t1 AT2G24840 50.000 58 29 0 1 58 62 119 6.59e-13 61.2
MS.gene028510.t1 AT5G60440 47.368 57 30 0 2 58 7 63 1.80e-12 60.5
MS.gene028510.t1 AT3G04100 42.105 57 33 0 2 58 14 70 1.12e-11 57.4
MS.gene028510.t1 AT1G65360 43.103 58 33 0 1 58 6 63 1.66e-11 57.4
MS.gene028510.t1 AT1G47760 44.828 58 32 0 1 58 1 58 1.99e-11 56.6
MS.gene028510.t1 AT4G36590 49.123 57 29 0 2 58 7 63 3.55e-11 56.6

Find 10 sgRNAs with CRISPR-Local

Find 16 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTATGACTATGCAAGTTCC+AGG 0.390086 4.1:+20301264 MS.gene028510:CDS
ACTTTCTCAAAGAGAAGAAA+AGG 0.421236 4.1:+20301161 MS.gene028510:CDS
TCTTTGAGAAAGTCACTTGA+CGG 0.458185 4.1:-20301151 None:intergenic
AACTTGTGCATCACAAAGAA+TGG 0.480043 4.1:-20301210 None:intergenic
ATTCTTTGTGATGCACAAGT+TGG 0.486752 4.1:+20301212 MS.gene028510:CDS
GAGGAAAGATTGTGATTCGA+AGG 0.502771 4.1:+20301111 MS.gene028510:CDS
ATTGTACACAATATATATGC+AGG 0.533300 4.1:-20301422 None:intergenic
GTCATAAAGCTTGTGAGTAG+AGG 0.558703 4.1:-20301249 None:intergenic
CTTTCTCAAAGAGAAGAAAA+GGG 0.568730 4.1:+20301162 MS.gene028510:CDS
TAGTTAATTAAGATGGGGAG+AGG 0.586556 4.1:+20301092 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAATTAGTTCTTATTGATC+AGG + chr4.1:20301392-20301411 MS.gene028510:intron 20.0%
!!! AAATTAGTTCTTATTGATCA+GGG + chr4.1:20301393-20301412 MS.gene028510:intron 20.0%
! ACAAATCGCAGTAAAATAAA+GGG - chr4.1:20301325-20301344 None:intergenic 25.0%
! ATTGTACACAATATATATGC+AGG - chr4.1:20301425-20301444 None:intergenic 25.0%
AAATGATTTGATCCTATACC+TGG - chr4.1:20301285-20301304 None:intergenic 30.0%
ACTTTCTCAAAGAGAAGAAA+AGG + chr4.1:20301161-20301180 MS.gene028510:CDS 30.0%
CACAAATCGCAGTAAAATAA+AGG - chr4.1:20301326-20301345 None:intergenic 30.0%
CTTTCTCAAAGAGAAGAAAA+GGG + chr4.1:20301162-20301181 MS.gene028510:CDS 30.0%
AACTTGTGCATCACAAAGAA+TGG - chr4.1:20301213-20301232 None:intergenic 35.0%
ATTCTTTGTGATGCACAAGT+TGG + chr4.1:20301212-20301231 MS.gene028510:CDS 35.0%
CGCAGTAAAATAAAGGGAAA+AGG - chr4.1:20301319-20301338 None:intergenic 35.0%
TTTATGACTATGCAAGTTCC+AGG + chr4.1:20301264-20301283 MS.gene028510:CDS 35.0%
! TCTTTGAGAAAGTCACTTGA+CGG - chr4.1:20301154-20301173 None:intergenic 35.0%
ACTATGCAAGTTCCAGGTAT+AGG + chr4.1:20301270-20301289 MS.gene028510:intron 40.0%
GAGGAAAGATTGTGATTCGA+AGG + chr4.1:20301111-20301130 MS.gene028510:CDS 40.0%
GTCATAAAGCTTGTGAGTAG+AGG - chr4.1:20301252-20301271 None:intergenic 40.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 20301104 20301447 20301104 ID=MS.gene028510
chr4.1 mRNA 20301104 20301447 20301104 ID=MS.gene028510.t1;Parent=MS.gene028510
chr4.1 exon 20301104 20301285 20301104 ID=MS.gene028510.t1.exon1;Parent=MS.gene028510.t1
chr4.1 CDS 20301104 20301285 20301104 ID=cds.MS.gene028510.t1;Parent=MS.gene028510.t1
chr4.1 exon 20301414 20301447 20301414 ID=MS.gene028510.t1.exon2;Parent=MS.gene028510.t1
chr4.1 CDS 20301414 20301447 20301414 ID=cds.MS.gene028510.t1;Parent=MS.gene028510.t1
Gene Sequence

>MS.gene028510

ATGGGGAGAGGAAAGATTGTGATTCGAAGGATTGAGAATTTGACAAGCCGTCAAGTGACTTTCTCAAAGAGAAGAAAAGGGTTGATGAAGAAAGCTAAAGAACTATCCATTCTTTGTGATGCACAAGTTGGATTGATTTTATTCTCCTCTACTCACAAGCTTTATGACTATGCAAGTTCCAGGTATAGGATCAAATCATTTTCTTATCTCTTCCTTTTCCCTTTATTTTACTGCGATTTGTGTATATATATGCTTCATTAATTGTATTGCTTCAAATCATTTTTTAAGAAAATTAGTTCTTATTGATCAGGGAGCTGACCTGCATATATATTGTGTACAATTGA
Protein sequence

>MS.gene028510.t1

MGRGKIVIRRIENLTSRQVTFSKRRKGLMKKAKELSILCDAQVGLILFSSTHKLYDYASSRELTCIYIVYN