Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene02858.t1 | XP_024634855.1 | 67.4 | 786 | 33 | 2 | 1 | 563 | 1 | 786 | 1.40E-276 | 961.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene02858.t1 | Q9LIE5 | 30.8 | 266 | 177 | 3 | 120 | 385 | 398 | 656 | 7.8e-31 | 136.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene02858.t1 | A0A151RX65 | 46.0 | 698 | 154 | 2 | 1 | 475 | 1 | 698 | 2.7e-157 | 565.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene02858.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene02858.t1 | MTR_0402s0040 | 27.088 | 491 | 246 | 15 | 6 | 471 | 60 | 463 | 1.06e-28 | 120 |
| MS.gene02858.t1 | MTR_4g102720 | 39.597 | 149 | 28 | 2 | 1 | 120 | 1 | 116 | 1.87e-25 | 105 |
| MS.gene02858.t1 | MTR_7g061980 | 35.398 | 113 | 43 | 2 | 4 | 86 | 7 | 119 | 2.30e-14 | 70.1 |
| MS.gene02858.t1 | MTR_0337s0060 | 29.577 | 142 | 95 | 3 | 166 | 305 | 14 | 152 | 1.01e-12 | 68.6 |
| MS.gene02858.t1 | MTR_6g022070 | 23.810 | 126 | 96 | 0 | 120 | 245 | 39 | 164 | 2.40e-11 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene02858.t1 | AT4G15090 | 27.346 | 373 | 232 | 5 | 108 | 472 | 377 | 718 | 3.67e-34 | 138 |
| MS.gene02858.t1 | AT4G15090 | 27.346 | 373 | 232 | 5 | 108 | 472 | 377 | 718 | 3.67e-34 | 138 |
| MS.gene02858.t1 | AT4G15090 | 27.346 | 373 | 232 | 5 | 108 | 472 | 377 | 718 | 3.67e-34 | 138 |
| MS.gene02858.t1 | AT4G15090 | 27.346 | 373 | 232 | 5 | 108 | 472 | 377 | 718 | 3.67e-34 | 138 |
| MS.gene02858.t1 | AT4G15090 | 27.346 | 373 | 232 | 5 | 108 | 472 | 377 | 718 | 3.67e-34 | 138 |
| MS.gene02858.t1 | AT3G22170 | 30.882 | 272 | 179 | 4 | 120 | 389 | 398 | 662 | 9.22e-33 | 134 |
| MS.gene02858.t1 | AT3G22170 | 30.882 | 272 | 179 | 4 | 120 | 389 | 398 | 662 | 9.22e-33 | 134 |
| MS.gene02858.t1 | AT4G38170 | 26.235 | 324 | 225 | 5 | 122 | 439 | 180 | 495 | 5.00e-30 | 124 |
| MS.gene02858.t1 | AT4G38180 | 33.040 | 227 | 144 | 3 | 120 | 342 | 413 | 635 | 3.92e-29 | 123 |
| MS.gene02858.t1 | AT1G76320 | 27.217 | 327 | 213 | 5 | 121 | 445 | 327 | 630 | 9.01e-27 | 115 |
| MS.gene02858.t1 | AT1G76320 | 27.217 | 327 | 213 | 5 | 121 | 445 | 327 | 630 | 9.38e-27 | 115 |
| MS.gene02858.t1 | AT1G76320 | 27.217 | 327 | 213 | 5 | 121 | 445 | 327 | 630 | 9.38e-27 | 115 |
| MS.gene02858.t1 | AT1G76320 | 27.217 | 327 | 213 | 5 | 121 | 445 | 327 | 630 | 1.30e-26 | 115 |
| MS.gene02858.t1 | AT4G19990 | 31.274 | 259 | 163 | 4 | 122 | 374 | 339 | 588 | 3.05e-26 | 114 |
| MS.gene02858.t1 | AT4G19990 | 31.274 | 259 | 163 | 4 | 122 | 374 | 339 | 588 | 3.05e-26 | 114 |
| MS.gene02858.t1 | AT4G19990 | 31.274 | 259 | 163 | 4 | 122 | 374 | 282 | 531 | 3.34e-26 | 114 |
| MS.gene02858.t1 | AT4G19990 | 31.274 | 259 | 163 | 4 | 122 | 374 | 339 | 588 | 3.49e-26 | 114 |
| MS.gene02858.t1 | AT4G19990 | 31.274 | 259 | 163 | 4 | 122 | 374 | 339 | 588 | 3.49e-26 | 114 |
| MS.gene02858.t1 | AT4G19990 | 31.274 | 259 | 163 | 4 | 122 | 374 | 339 | 588 | 4.52e-26 | 113 |
| MS.gene02858.t1 | AT4G19990 | 31.274 | 259 | 163 | 4 | 122 | 374 | 353 | 602 | 4.63e-26 | 113 |
| MS.gene02858.t1 | AT1G80010 | 26.586 | 331 | 217 | 10 | 79 | 396 | 400 | 717 | 5.31e-26 | 113 |
| MS.gene02858.t1 | AT2G27110 | 27.925 | 265 | 184 | 4 | 122 | 385 | 217 | 475 | 3.15e-25 | 110 |
| MS.gene02858.t1 | AT2G27110 | 27.925 | 265 | 184 | 4 | 122 | 385 | 362 | 620 | 3.35e-25 | 110 |
| MS.gene02858.t1 | AT2G27110 | 27.925 | 265 | 184 | 4 | 122 | 385 | 362 | 620 | 3.35e-25 | 110 |
| MS.gene02858.t1 | AT5G18960 | 32.000 | 225 | 138 | 6 | 120 | 338 | 510 | 725 | 9.30e-25 | 109 |
| MS.gene02858.t1 | AT5G18960 | 32.000 | 225 | 138 | 6 | 120 | 338 | 510 | 725 | 9.30e-25 | 109 |
| MS.gene02858.t1 | AT3G06250 | 29.225 | 284 | 185 | 7 | 120 | 396 | 486 | 760 | 3.05e-24 | 107 |
| MS.gene02858.t1 | AT3G06250 | 29.225 | 284 | 185 | 7 | 120 | 396 | 486 | 760 | 3.05e-24 | 107 |
| MS.gene02858.t1 | AT3G06250 | 29.225 | 284 | 185 | 7 | 120 | 396 | 486 | 760 | 3.05e-24 | 107 |
| MS.gene02858.t1 | AT2G32250 | 24.648 | 284 | 208 | 3 | 122 | 405 | 335 | 612 | 3.62e-23 | 104 |
| MS.gene02858.t1 | AT2G32250 | 24.648 | 284 | 208 | 3 | 122 | 405 | 335 | 612 | 3.62e-23 | 104 |
| MS.gene02858.t1 | AT2G32250 | 24.648 | 284 | 208 | 3 | 122 | 405 | 335 | 612 | 3.93e-23 | 104 |
| MS.gene02858.t1 | AT2G32250 | 24.648 | 284 | 208 | 3 | 122 | 405 | 335 | 612 | 3.93e-23 | 104 |
| MS.gene02858.t1 | AT2G32250 | 24.648 | 284 | 208 | 3 | 122 | 405 | 335 | 612 | 3.93e-23 | 104 |
| MS.gene02858.t1 | AT2G32250 | 24.648 | 284 | 208 | 3 | 122 | 405 | 294 | 571 | 4.15e-23 | 104 |
| MS.gene02858.t1 | AT2G32250 | 24.648 | 284 | 208 | 3 | 122 | 405 | 294 | 571 | 4.54e-23 | 104 |
| MS.gene02858.t1 | AT2G32250 | 24.648 | 284 | 208 | 3 | 122 | 405 | 335 | 612 | 5.54e-23 | 103 |
| MS.gene02858.t1 | AT1G52520 | 25.806 | 279 | 191 | 5 | 131 | 396 | 420 | 695 | 2.33e-21 | 99.0 |
| MS.gene02858.t1 | AT1G10240 | 27.111 | 225 | 149 | 5 | 123 | 342 | 394 | 608 | 2.31e-17 | 86.3 |
| MS.gene02858.t1 | AT1G10240 | 27.111 | 225 | 149 | 5 | 123 | 342 | 394 | 608 | 2.31e-17 | 86.3 |
| MS.gene02858.t1 | AT5G28530 | 24.164 | 269 | 190 | 6 | 79 | 346 | 308 | 563 | 7.76e-15 | 78.2 |
| MS.gene02858.t1 | AT5G28530 | 24.164 | 269 | 190 | 6 | 79 | 346 | 371 | 626 | 9.21e-15 | 77.8 |
| MS.gene02858.t1 | AT5G28530 | 25.651 | 269 | 182 | 8 | 79 | 346 | 308 | 559 | 4.20e-14 | 75.9 |
| MS.gene02858.t1 | AT5G28530 | 25.651 | 269 | 182 | 8 | 79 | 346 | 371 | 622 | 4.21e-14 | 75.9 |
| MS.gene02858.t1 | AT5G28530 | 25.651 | 269 | 182 | 8 | 79 | 346 | 371 | 622 | 4.21e-14 | 75.9 |
Find 85 sgRNAs with CRISPR-Local
Find 159 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCCACCTCTTTAAAATATA+AGG | 0.176322 | 2.4:+61190336 | None:intergenic |
| TTGAAGATCCTTGGGAGTTC+TGG | 0.234863 | 2.4:-61191946 | MS.gene02858:CDS |
| TTAAGAAACTCGACAGCTTC+TGG | 0.244592 | 2.4:+61190177 | None:intergenic |
| GACAACATATGAGTTGTTTC+TGG | 0.253501 | 2.4:+61191668 | None:intergenic |
| AAATTTGTCCCCGCTTTATT+AGG | 0.254015 | 2.4:-61190224 | MS.gene02858:CDS |
| CCGAAAACCATATCAACTTT+TGG | 0.256089 | 2.4:+61191974 | None:intergenic |
| ACATCCCTCTTTATAAAGTA+TGG | 0.262729 | 2.4:-61190915 | MS.gene02858:CDS |
| TATCTCTTTAATATTGTTAG+AGG | 0.283905 | 2.4:+61190077 | None:intergenic |
| TATTGCAAAGAAAAGGAATA+TGG | 0.294986 | 2.4:-61190493 | MS.gene02858:CDS |
| ATCTCCAGCACAATGTTATA+AGG | 0.298579 | 2.4:-61190247 | MS.gene02858:CDS |
| CCTTGCTTCACAATTTGTTC+TGG | 0.300300 | 2.4:+61191766 | None:intergenic |
| CATATAGGTGCACTTGTAAT+TGG | 0.302297 | 2.4:+61189686 | None:intergenic |
| CTTAAAAGTCTTCATTCATA+TGG | 0.313141 | 2.4:-61190379 | MS.gene02858:CDS |
| TTGGAAGCCAAAAGTTGATA+TGG | 0.315145 | 2.4:-61191981 | MS.gene02858:CDS |
| CTTTGCGCGTTTCTTTCTCT+TGG | 0.329292 | 2.4:+61189954 | None:intergenic |
| ATGAAGAAGACTTTGACATT+AGG | 0.337357 | 2.4:-61190828 | MS.gene02858:CDS |
| CAATTACAAGTGCACCTATA+TGG | 0.342061 | 2.4:-61189685 | MS.gene02858:CDS |
| TGTACAGTATAAAGGAGAAA+TGG | 0.347671 | 2.4:-61190863 | MS.gene02858:CDS |
| TGTCGTAAATTTGAGAGCTT+TGG | 0.348811 | 2.4:-61190420 | MS.gene02858:CDS |
| TGTTATTAGCTAACCATAGA+TGG | 0.362982 | 2.4:+61189641 | None:intergenic |
| TAAGGAAGTTGCTGATGAAT+TGG | 0.363801 | 2.4:-61190157 | MS.gene02858:CDS |
| GATGGAACATCTAGTCAATT+TGG | 0.363982 | 2.4:-61189550 | MS.gene02858:CDS |
| TGCATACAATCAACCATCTA+TGG | 0.365263 | 2.4:-61189654 | MS.gene02858:intron |
| TGAAGAAGACTTTGACATTA+GGG | 0.366463 | 2.4:-61190827 | MS.gene02858:CDS |
| TCGGTAGCTTTGAAGATCCT+TGG | 0.368773 | 2.4:-61191955 | MS.gene02858:CDS |
| ATGGCAAGTGACCTTCGATT+TGG | 0.384310 | 2.4:-61190466 | MS.gene02858:CDS |
| TTTGTTCTGGTCTCTAGTCT+TGG | 0.387348 | 2.4:+61191779 | None:intergenic |
| GCAAAGAATGTACAGTATAA+AGG | 0.392434 | 2.4:-61190871 | MS.gene02858:CDS |
| AGAAGCTGTCGAGTTTCTTA+AGG | 0.400377 | 2.4:-61190175 | MS.gene02858:CDS |
| GATACAAGATGAATGAAGAT+TGG | 0.401677 | 2.4:-61192000 | None:intergenic |
| CGGTAGCTTTGAAGATCCTT+GGG | 0.404987 | 2.4:-61191954 | MS.gene02858:CDS |
| TATGCATTATTAAGCCATAT+AGG | 0.412953 | 2.4:+61189671 | None:intergenic |
| GACTTTAAGAAATGCATGTA+TGG | 0.419899 | 2.4:-61190972 | MS.gene02858:intron |
| GTACAGTATAAAGGAGAAAT+GGG | 0.433816 | 2.4:-61190862 | MS.gene02858:CDS |
| GATGGTGCAACACAAGTAAA+GGG | 0.435850 | 2.4:-61190042 | MS.gene02858:CDS |
| AAGAACAATTTGAAGATGGT+TGG | 0.449713 | 2.4:-61190938 | MS.gene02858:CDS |
| GTTCAAAACGTTGGAAAGGT+TGG | 0.454209 | 2.4:-61189993 | MS.gene02858:CDS |
| CTTATGTTATTGCAAAGAAA+AGG | 0.457771 | 2.4:-61190500 | MS.gene02858:CDS |
| AGTAGAGCTTCACAAACTAT+TGG | 0.464878 | 2.4:-61190300 | MS.gene02858:CDS |
| TGATGGTGCAACACAAGTAA+AGG | 0.471729 | 2.4:-61190043 | MS.gene02858:CDS |
| ACAAATTGTGAAGCAAGGTT+AGG | 0.474466 | 2.4:-61191761 | MS.gene02858:CDS |
| GAATACGAGTTCTTCAGTCT+TGG | 0.477905 | 2.4:+61190645 | None:intergenic |
| ATTTCCTTATAACATTGTGC+TGG | 0.482058 | 2.4:+61190243 | None:intergenic |
| TTCACAAATTCAAGAACCTA+TGG | 0.484743 | 2.4:-61189923 | MS.gene02858:intron |
| GAACACCATACTTTATAAAG+AGG | 0.486712 | 2.4:+61190910 | None:intergenic |
| ATTGCAAAGAAAAGGAATAT+GGG | 0.487709 | 2.4:-61190492 | MS.gene02858:CDS |
| ACATTGTAAATCACTAATGT+TGG | 0.488437 | 2.4:+61189727 | None:intergenic |
| TTCAAAACGTTGGAAAGGTT+GGG | 0.489068 | 2.4:-61189992 | MS.gene02858:CDS |
| TGGGAGTTCTGGAAAACTTA+CGG | 0.491418 | 2.4:-61191935 | MS.gene02858:CDS |
| CTTGTAATTGGCGATGCATA+TGG | 0.492051 | 2.4:+61189698 | None:intergenic |
| GAATGTGGATGGAAAATTGA+TGG | 0.494783 | 2.4:-61191732 | MS.gene02858:CDS |
| CTCTTTAAAATATAAGGCTC+AGG | 0.500537 | 2.4:+61190342 | None:intergenic |
| GAGATATCAAGTACTAATGA+TGG | 0.502322 | 2.4:-61190060 | MS.gene02858:CDS |
| AGAAAAGGAATATGGGAGAA+TGG | 0.503260 | 2.4:-61190485 | MS.gene02858:CDS |
| GATGAAGAACAATTTGAAGA+TGG | 0.510431 | 2.4:-61190942 | MS.gene02858:CDS |
| TAGTCATGTTGTAGAAGACT+TGG | 0.514820 | 2.4:-61190274 | MS.gene02858:CDS |
| TTCTTGAATTTGTGAAGCAG+TGG | 0.516062 | 2.4:+61189930 | None:intergenic |
| AATAGTAGGAGTATAAAGCT+TGG | 0.523378 | 2.4:+61190602 | None:intergenic |
| ATAAGTAGTGAACAAGTGAA+TGG | 0.530525 | 2.4:-61190102 | MS.gene02858:CDS |
| AGGTTGGGTAGAAACGAAAC+TGG | 0.532288 | 2.4:-61189977 | MS.gene02858:CDS |
| CGATTTCCTTTGTTGTACAC+CGG | 0.540939 | 2.4:+61191589 | None:intergenic |
| GTAGAAGAACAAAGCTAAGC+AGG | 0.541747 | 2.4:-61189825 | MS.gene02858:intron |
| TGTGACGATCCTAATAAAGC+GGG | 0.542482 | 2.4:+61190215 | None:intergenic |
| TTAGGACTTAAGAATGTGGA+TGG | 0.548535 | 2.4:-61191743 | MS.gene02858:CDS |
| AAGATGTTGTAGAAGAAAAG+CGG | 0.551004 | 2.4:-61190710 | MS.gene02858:CDS |
| AAGGGGTTTAAGAACAAAGA+AGG | 0.557368 | 2.4:-61190024 | MS.gene02858:CDS |
| AAGAACAAAGAAGGTCCAAA+GGG | 0.561141 | 2.4:-61190015 | MS.gene02858:CDS |
| TTATAGGAGCAACTTGATGA+TGG | 0.570385 | 2.4:-61189433 | MS.gene02858:intron |
| TAAGAACAAAGAAGGTCCAA+AGG | 0.577271 | 2.4:-61190016 | MS.gene02858:CDS |
| AACACCATACTTTATAAAGA+GGG | 0.583291 | 2.4:+61190911 | None:intergenic |
| AAGGGTTCAAAACGTTGGAA+AGG | 0.583511 | 2.4:-61189997 | MS.gene02858:CDS |
| GTCCAAAGGGTTCAAAACGT+TGG | 0.588871 | 2.4:-61190002 | MS.gene02858:CDS |
| TTTATTAGGATCGTCACAGA+AGG | 0.594701 | 2.4:-61190210 | MS.gene02858:CDS |
| GCAAATGTAACTCGTGGTTG+TGG | 0.597490 | 2.4:+61191690 | None:intergenic |
| CCAGAACAAATTGTGAAGCA+AGG | 0.610911 | 2.4:-61191766 | MS.gene02858:CDS |
| CTGTGACGATCCTAATAAAG+CGG | 0.623114 | 2.4:+61190214 | None:intergenic |
| ATTGAACTAGCTGATAGTGC+CGG | 0.644559 | 2.4:-61191608 | MS.gene02858:CDS |
| ATAGTGCCGGTGTACAACAA+AGG | 0.660446 | 2.4:-61191595 | MS.gene02858:CDS |
| TTTCTGGCAAATGTAACTCG+TGG | 0.662245 | 2.4:+61191684 | None:intergenic |
| CAAACAACTCATACTCACGT+TGG | 0.665525 | 2.4:+61190568 | None:intergenic |
| AGCATGCTTTGTGAAAAGCA+TGG | 0.679180 | 2.4:-61190544 | MS.gene02858:CDS |
| ATGGTGCAACACAAGTAAAG+GGG | 0.679306 | 2.4:-61190041 | MS.gene02858:CDS |
| AAGGTTAGGACTTAAGAATG+TGG | 0.679784 | 2.4:-61191747 | MS.gene02858:CDS |
| GTGACGATCCTAATAAAGCG+GGG | 0.705450 | 2.4:+61190216 | None:intergenic |
| GAGTTCTGGAAAACTTACGG+TGG | 0.762461 | 2.4:-61191932 | MS.gene02858:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATATTAATAATACCAT+AGG | + | chr2.4:61191514-61191533 | None:intergenic | 10.0% |
| !!! | TATTAAAAATTTTATGAGTA+AGG | - | chr2.4:61190652-61190671 | MS.gene02858:CDS | 10.0% |
| !! | AAAAAAAAGAGAAATAAGTT+TGG | - | chr2.4:61189929-61189948 | MS.gene02858:CDS | 15.0% |
| !!! | AATTATTTTGGTTTTTATGT+AGG | - | chr2.4:61191840-61191859 | MS.gene02858:intron | 15.0% |
| !!! | ACTTGCATTTTTTAAATTAT+AGG | - | chr2.4:61191969-61191988 | MS.gene02858:CDS | 15.0% |
| !!! | ATTATTTTGGTTTTTATGTA+GGG | - | chr2.4:61191841-61191860 | MS.gene02858:intron | 15.0% |
| !!! | GTTTAGTGTTTAAATTATTT+TGG | - | chr2.4:61191828-61191847 | MS.gene02858:intron | 15.0% |
| !! | TATCTCTTTAATATTGTTAG+AGG | + | chr2.4:61191344-61191363 | None:intergenic | 20.0% |
| !! | TTAAACACTAAACATAGTTA+AGG | + | chr2.4:61191821-61191840 | None:intergenic | 20.0% |
| !!! | TTGATTGATTACAGTTATTT+TGG | - | chr2.4:61190083-61190102 | MS.gene02858:CDS | 20.0% |
| ! | AACACCATACTTTATAAAGA+GGG | + | chr2.4:61190510-61190529 | None:intergenic | 25.0% |
| ! | ACACTTAGGAAATTTAATGA+AGG | - | chr2.4:61190403-61190422 | MS.gene02858:CDS | 25.0% |
| ! | ACATTGTAAATCACTAATGT+TGG | + | chr2.4:61191694-61191713 | None:intergenic | 25.0% |
| ! | ACTTAGGAAATTTAATGAAG+GGG | - | chr2.4:61190405-61190424 | MS.gene02858:CDS | 25.0% |
| ! | AGATTATACACACAGAAAAA+AGG | - | chr2.4:61189533-61189552 | MS.gene02858:CDS | 25.0% |
| ! | ATTGCAAAGAAAAGGAATAT+GGG | - | chr2.4:61190926-61190945 | MS.gene02858:CDS | 25.0% |
| ! | CAAAATGGAATTAAACACTT+AGG | - | chr2.4:61190389-61190408 | MS.gene02858:CDS | 25.0% |
| ! | CACGAAAAAAAGGAATATAA+AGG | + | chr2.4:61191574-61191593 | None:intergenic | 25.0% |
| ! | CACTTAGGAAATTTAATGAA+GGG | - | chr2.4:61190404-61190423 | MS.gene02858:CDS | 25.0% |
| ! | CTTAAAAGTCTTCATTCATA+TGG | - | chr2.4:61191039-61191058 | MS.gene02858:intron | 25.0% |
| ! | CTTATGTTATTGCAAAGAAA+AGG | - | chr2.4:61190918-61190937 | MS.gene02858:CDS | 25.0% |
| ! | TATGCATTATTAAGCCATAT+AGG | + | chr2.4:61191750-61191769 | None:intergenic | 25.0% |
| ! | TATTGCAAAGAAAAGGAATA+TGG | - | chr2.4:61190925-61190944 | MS.gene02858:CDS | 25.0% |
| ! | TGGAATAAGTCAAAAATAGT+AGG | + | chr2.4:61190833-61190852 | None:intergenic | 25.0% |
| !! | AAATTTTATGAGTAAGGACT+TGG | - | chr2.4:61190658-61190677 | MS.gene02858:CDS | 25.0% |
| !!! | TAGTTTTACTAGCTTATTGA+TGG | - | chr2.4:61191897-61191916 | MS.gene02858:intron | 25.0% |
| AAGAACAATTTGAAGATGGT+TGG | - | chr2.4:61190480-61190499 | MS.gene02858:CDS | 30.0% | |
| AAGATGTTGTAGAAGAAAAG+CGG | - | chr2.4:61190708-61190727 | MS.gene02858:CDS | 30.0% | |
| ACATCCCTCTTTATAAAGTA+TGG | - | chr2.4:61190503-61190522 | MS.gene02858:CDS | 30.0% | |
| AGAAATAAGTTTGGTACAAG+GGG | - | chr2.4:61189938-61189957 | MS.gene02858:CDS | 30.0% | |
| AGAGAAATAAGTTTGGTACA+AGG | - | chr2.4:61189936-61189955 | MS.gene02858:CDS | 30.0% | |
| AGGTTTCCAAAAATGTAATG+AGG | - | chr2.4:61191613-61191632 | MS.gene02858:CDS | 30.0% | |
| ATAAGTAGTGAACAAGTGAA+TGG | - | chr2.4:61191316-61191335 | MS.gene02858:intron | 30.0% | |
| ATGAAGAAGACTTTGACATT+AGG | - | chr2.4:61190590-61190609 | MS.gene02858:CDS | 30.0% | |
| ATGGTGTTCAGAAAAATGAT+TGG | - | chr2.4:61190522-61190541 | MS.gene02858:CDS | 30.0% | |
| ATTTCCTTATAACATTGTGC+TGG | + | chr2.4:61191178-61191197 | None:intergenic | 30.0% | |
| CTTAGGAAATTTAATGAAGG+GGG | - | chr2.4:61190406-61190425 | MS.gene02858:CDS | 30.0% | |
| GAACACCATACTTTATAAAG+AGG | + | chr2.4:61190511-61190530 | None:intergenic | 30.0% | |
| GAGAAATAAGTTTGGTACAA+GGG | - | chr2.4:61189937-61189956 | MS.gene02858:CDS | 30.0% | |
| GAGATATCAAGTACTAATGA+TGG | - | chr2.4:61191358-61191377 | MS.gene02858:intron | 30.0% | |
| GATGAAGAACAATTTGAAGA+TGG | - | chr2.4:61190476-61190495 | MS.gene02858:CDS | 30.0% | |
| GATTTACTGAGTAAAGAAGT+AGG | - | chr2.4:61189855-61189874 | MS.gene02858:intron | 30.0% | |
| GCAAAGAATGTACAGTATAA+AGG | - | chr2.4:61190547-61190566 | MS.gene02858:CDS | 30.0% | |
| GTACAGTATAAAGGAGAAAT+GGG | - | chr2.4:61190556-61190575 | MS.gene02858:CDS | 30.0% | |
| TACTGATCAAGACAAATCAA+TGG | - | chr2.4:61190304-61190323 | MS.gene02858:CDS | 30.0% | |
| TATACACACAGAAAAAAGGA+TGG | - | chr2.4:61189537-61189556 | MS.gene02858:CDS | 30.0% | |
| TGAAGAAGACTTTGACATTA+GGG | - | chr2.4:61190591-61190610 | MS.gene02858:CDS | 30.0% | |
| TGATCAGTAAAAACTGTTTG+AGG | + | chr2.4:61190293-61190312 | None:intergenic | 30.0% | |
| TGTACAGTATAAAGGAGAAA+TGG | - | chr2.4:61190555-61190574 | MS.gene02858:CDS | 30.0% | |
| TGTTATTAGCTAACCATAGA+TGG | + | chr2.4:61191780-61191799 | None:intergenic | 30.0% | |
| TGTTCTTCTACACGAAAAAA+AGG | + | chr2.4:61191584-61191603 | None:intergenic | 30.0% | |
| TTCACAAATTCAAGAACCTA+TGG | - | chr2.4:61191495-61191514 | MS.gene02858:intron | 30.0% | |
| TTTCCAAAAATGTAATGAGG+CGG | - | chr2.4:61191616-61191635 | MS.gene02858:CDS | 30.0% | |
| ! | AATAGTAGGAGTATAAAGCT+TGG | + | chr2.4:61190819-61190838 | None:intergenic | 30.0% |
| ! | GACTTTAAGAAATGCATGTA+TGG | - | chr2.4:61190446-61190465 | MS.gene02858:CDS | 30.0% |
| ! | TGTATTCTTTTCCAAATCGA+AGG | + | chr2.4:61190966-61190985 | None:intergenic | 30.0% |
| !! | AGCCTTATATTTTAAAGAGG+TGG | - | chr2.4:61191080-61191099 | MS.gene02858:intron | 30.0% |
| !! | CTCTTTAAAATATAAGGCTC+AGG | + | chr2.4:61191079-61191098 | None:intergenic | 30.0% |
| !! | CTGAGCCTTATATTTTAAAG+AGG | - | chr2.4:61191077-61191096 | MS.gene02858:intron | 30.0% |
| !! | GTCCACCTCTTTAAAATATA+AGG | + | chr2.4:61191085-61191104 | None:intergenic | 30.0% |
| !!! | CCAAAAGTTGATATGGTTTT+CGG | - | chr2.4:61189444-61189463 | MS.gene02858:intron | 30.0% |
| !!! | TCTTCAGTCTTGGAATTTTT+TGG | + | chr2.4:61190766-61190785 | None:intergenic | 30.0% |
| AAGAACAAAGAAGGTCCAAA+GGG | - | chr2.4:61191403-61191422 | MS.gene02858:intron | 35.0% | |
| AAGGGGTTTAAGAACAAAGA+AGG | - | chr2.4:61191394-61191413 | MS.gene02858:intron | 35.0% | |
| AAGGTTAGGACTTAAGAATG+TGG | - | chr2.4:61189671-61189690 | MS.gene02858:CDS | 35.0% | |
| ACAAATTGTGAAGCAAGGTT+AGG | - | chr2.4:61189657-61189676 | MS.gene02858:CDS | 35.0% | |
| AGAAAAGGAATATGGGAGAA+TGG | - | chr2.4:61190933-61190952 | MS.gene02858:CDS | 35.0% | |
| AGTAGAGCTTCACAAACTAT+TGG | - | chr2.4:61191118-61191137 | MS.gene02858:intron | 35.0% | |
| ATCTCCAGCACAATGTTATA+AGG | - | chr2.4:61191171-61191190 | MS.gene02858:intron | 35.0% | |
| ATGGTTCAGTTTCTTCTTGT+AGG | - | chr2.4:61189556-61189575 | MS.gene02858:CDS | 35.0% | |
| CAATATCTAGCTGATAAGCA+TGG | + | chr2.4:61190022-61190041 | None:intergenic | 35.0% | |
| CAATTACAAGTGCACCTATA+TGG | - | chr2.4:61191733-61191752 | MS.gene02858:CDS | 35.0% | |
| CATATAGGTGCACTTGTAAT+TGG | + | chr2.4:61191735-61191754 | None:intergenic | 35.0% | |
| GAATGTGGATGGAAAATTGA+TGG | - | chr2.4:61189686-61189705 | MS.gene02858:CDS | 35.0% | |
| GATGGAACATCTAGTCAATT+TGG | - | chr2.4:61191868-61191887 | MS.gene02858:intron | 35.0% | |
| TAAGAACAAAGAAGGTCCAA+AGG | - | chr2.4:61191402-61191421 | MS.gene02858:intron | 35.0% | |
| TAAGGAAGTTGCTGATGAAT+TGG | - | chr2.4:61191261-61191280 | MS.gene02858:intron | 35.0% | |
| TAGTCATGTTGTAGAAGACT+TGG | - | chr2.4:61191144-61191163 | MS.gene02858:intron | 35.0% | |
| TGATAAGCATGGTAGAAAGT+TGG | + | chr2.4:61190011-61190030 | None:intergenic | 35.0% | |
| TGCATACAATCAACCATCTA+TGG | - | chr2.4:61191764-61191783 | MS.gene02858:CDS | 35.0% | |
| TGTCGTAAATTTGAGAGCTT+TGG | - | chr2.4:61190998-61191017 | MS.gene02858:intron | 35.0% | |
| TTACTGAGTAAAGAAGTAGG+AGG | - | chr2.4:61189858-61189877 | MS.gene02858:intron | 35.0% | |
| TTAGGACTTAAGAATGTGGA+TGG | - | chr2.4:61189675-61189694 | MS.gene02858:CDS | 35.0% | |
| TTATAGGAGCAACTTGATGA+TGG | - | chr2.4:61191985-61192004 | MS.gene02858:CDS | 35.0% | |
| TTCAAAACGTTGGAAAGGTT+GGG | - | chr2.4:61191426-61191445 | MS.gene02858:intron | 35.0% | |
| TTCCAAAAATGTAATGAGGC+GGG | - | chr2.4:61191617-61191636 | MS.gene02858:CDS | 35.0% | |
| TTCTTGAATTTGTGAAGCAG+TGG | + | chr2.4:61191491-61191510 | None:intergenic | 35.0% | |
| TTTATTAGGATCGTCACAGA+AGG | - | chr2.4:61191208-61191227 | MS.gene02858:intron | 35.0% | |
| ! | AAATTTGTCCCCGCTTTATT+AGG | - | chr2.4:61191194-61191213 | MS.gene02858:intron | 35.0% |
| ! | ATCAGATCACCAATGTGTTT+TGG | - | chr2.4:61190045-61190064 | MS.gene02858:CDS | 35.0% |
| ! | CCGAAAACCATATCAACTTT+TGG | + | chr2.4:61189447-61189466 | None:intergenic | 35.0% |
| ! | GACAACATATGAGTTGTTTC+TGG | + | chr2.4:61189753-61189772 | None:intergenic | 35.0% |
| ! | TCAGATCACCAATGTGTTTT+GGG | - | chr2.4:61190046-61190065 | MS.gene02858:CDS | 35.0% |
| !! | TTGGAAGCCAAAAGTTGATA+TGG | - | chr2.4:61189437-61189456 | MS.gene02858:intron | 35.0% |
| !!! | ATTGATGGTGCATGATTTTG+TGG | - | chr2.4:61189701-61189720 | MS.gene02858:CDS | 35.0% |
| AAACTGCTGAGTCATATGAG+TGG | - | chr2.4:61190228-61190247 | MS.gene02858:CDS | 40.0% | |
| AAGGGTTCAAAACGTTGGAA+AGG | - | chr2.4:61191421-61191440 | MS.gene02858:intron | 40.0% | |
| AATAAGTTTGGTACAAGGGG+AGG | - | chr2.4:61189941-61189960 | MS.gene02858:CDS | 40.0% | |
| AATCCTGAGATGATTGCTAG+TGG | + | chr2.4:61190158-61190177 | None:intergenic | 40.0% | |
| ACATAAACCATGGTAAGCTC+CGG | + | chr2.4:61190354-61190373 | None:intergenic | 40.0% | |
| AGAAGCTGTCGAGTTTCTTA+AGG | - | chr2.4:61191243-61191262 | MS.gene02858:intron | 40.0% | |
| AGCATGCTTTGTGAAAAGCA+TGG | - | chr2.4:61190874-61190893 | MS.gene02858:CDS | 40.0% | |
| ATGGTGCAACACAAGTAAAG+GGG | - | chr2.4:61191377-61191396 | MS.gene02858:intron | 40.0% | |
| CAAAAATTACAGCTCCTCGA+TGG | + | chr2.4:61190187-61190206 | None:intergenic | 40.0% | |
| CAAACAACTCATACTCACGT+TGG | + | chr2.4:61190853-61190872 | None:intergenic | 40.0% | |
| CCAGAACAAATTGTGAAGCA+AGG | - | chr2.4:61189652-61189671 | MS.gene02858:intron | 40.0% | |
| CTGTGACGATCCTAATAAAG+CGG | + | chr2.4:61191207-61191226 | None:intergenic | 40.0% | |
| CTTACCATGGTTTATGTACG+TGG | - | chr2.4:61190357-61190376 | MS.gene02858:CDS | 40.0% | |
| CTTGTAATTGGCGATGCATA+TGG | + | chr2.4:61191723-61191742 | None:intergenic | 40.0% | |
| GAATACGAGTTCTTCAGTCT+TGG | + | chr2.4:61190776-61190795 | None:intergenic | 40.0% | |
| GATGGTGCAACACAAGTAAA+GGG | - | chr2.4:61191376-61191395 | MS.gene02858:intron | 40.0% | |
| GTAGAAGAACAAAGCTAAGC+AGG | - | chr2.4:61191593-61191612 | MS.gene02858:CDS | 40.0% | |
| GTTCAAAACGTTGGAAAGGT+TGG | - | chr2.4:61191425-61191444 | MS.gene02858:intron | 40.0% | |
| TACGGTGGTAAGGTTTGATT+CGG | - | chr2.4:61189501-61189520 | MS.gene02858:intron | 40.0% | |
| TGTGACGATCCTAATAAAGC+GGG | + | chr2.4:61191206-61191225 | None:intergenic | 40.0% | |
| TTAAGAAACTCGACAGCTTC+TGG | + | chr2.4:61191244-61191263 | None:intergenic | 40.0% | |
| TTTGTTCTGGTCTCTAGTCT+TGG | + | chr2.4:61189642-61189661 | None:intergenic | 40.0% | |
| ! | AGGTTTGTTTGCTGCAAAGA+AGG | - | chr2.4:61189576-61189595 | MS.gene02858:intron | 40.0% |
| ! | ATCCCGCCTCATTACATTTT+TGG | + | chr2.4:61191622-61191641 | None:intergenic | 40.0% |
| ! | ATTGAACTAGCTGATAGTGC+CGG | - | chr2.4:61189810-61189829 | MS.gene02858:CDS | 40.0% |
| ! | CATCGAGGAGCTGTAATTTT+TGG | - | chr2.4:61190185-61190204 | MS.gene02858:CDS | 40.0% |
| ! | CCTTGCTTCACAATTTGTTC+TGG | + | chr2.4:61189655-61189674 | None:intergenic | 40.0% |
| ! | CGATTTCCTTTGTTGTACAC+CGG | + | chr2.4:61189832-61189851 | None:intergenic | 40.0% |
| ! | GTTTTATGATCTCGCTTGTC+TGG | + | chr2.4:61189612-61189631 | None:intergenic | 40.0% |
| ! | GTTTTTATGTAGGGAGACGA+TGG | - | chr2.4:61191850-61191869 | MS.gene02858:intron | 40.0% |
| ! | TAAGTTTTCCAGAACTCCCA+AGG | + | chr2.4:61189483-61189502 | None:intergenic | 40.0% |
| ! | TGATGGTGCAACACAAGTAA+AGG | - | chr2.4:61191375-61191394 | MS.gene02858:intron | 40.0% |
| ! | TTTCTGGCAAATGTAACTCG+TGG | + | chr2.4:61189737-61189756 | None:intergenic | 40.0% |
| !! | TGGGAGTTCTGGAAAACTTA+CGG | - | chr2.4:61189483-61189502 | MS.gene02858:intron | 40.0% |
| !! | TTCCAACGTTTTGAACCCTT+TGG | + | chr2.4:61191421-61191440 | None:intergenic | 40.0% |
| AAATTACAGCTCCTCGATGG+TGG | + | chr2.4:61190184-61190203 | None:intergenic | 45.0% | |
| ACGGTGGTAAGGTTTGATTC+GGG | - | chr2.4:61189502-61189521 | MS.gene02858:intron | 45.0% | |
| ACGTGGCACTTGATGCAAAA+TGG | - | chr2.4:61190374-61190393 | MS.gene02858:CDS | 45.0% | |
| AGACCACTAGCAATCATCTC+AGG | - | chr2.4:61190152-61190171 | MS.gene02858:CDS | 45.0% | |
| AGCATCTGCCCAAAACACAT+TGG | + | chr2.4:61190057-61190076 | None:intergenic | 45.0% | |
| AGGTTGGGTAGAAACGAAAC+TGG | - | chr2.4:61191441-61191460 | MS.gene02858:intron | 45.0% | |
| AGTGCCACGTACATAAACCA+TGG | + | chr2.4:61190364-61190383 | None:intergenic | 45.0% | |
| ATGGCAAGTGACCTTCGATT+TGG | - | chr2.4:61190952-61190971 | MS.gene02858:CDS | 45.0% | |
| CATAAACCATGGTAAGCTCC+GGG | + | chr2.4:61190353-61190372 | None:intergenic | 45.0% | |
| CTGGAAAACTTACGGTGGTA+AGG | - | chr2.4:61189491-61189510 | MS.gene02858:intron | 45.0% | |
| CTTTGCGCGTTTCTTTCTCT+TGG | + | chr2.4:61191467-61191486 | None:intergenic | 45.0% | |
| GCAAATGTAACTCGTGGTTG+TGG | + | chr2.4:61189731-61189750 | None:intergenic | 45.0% | |
| GTCCAAAGGGTTCAAAACGT+TGG | - | chr2.4:61191416-61191435 | MS.gene02858:intron | 45.0% | |
| GTGACGATCCTAATAAAGCG+GGG | + | chr2.4:61191205-61191224 | None:intergenic | 45.0% | |
| TCAGGATTTAACCACCATCG+AGG | - | chr2.4:61190170-61190189 | MS.gene02858:CDS | 45.0% | |
| TTGAAGATCCTTGGGAGTTC+TGG | - | chr2.4:61189472-61189491 | MS.gene02858:intron | 45.0% | |
| ! | GATGGTGCATGATTTTGTGG+AGG | - | chr2.4:61189704-61189723 | MS.gene02858:CDS | 45.0% |
| !! | ATAGTGCCGGTGTACAACAA+AGG | - | chr2.4:61189823-61189842 | MS.gene02858:CDS | 45.0% |
| !! | ATGTGTTTTGGGCAGATGCT+AGG | - | chr2.4:61190057-61190076 | MS.gene02858:CDS | 45.0% |
| !! | CGGTAGCTTTGAAGATCCTT+GGG | - | chr2.4:61189464-61189483 | MS.gene02858:intron | 45.0% |
| !! | GAGTTCTGGAAAACTTACGG+TGG | - | chr2.4:61189486-61189505 | MS.gene02858:intron | 45.0% |
| !! | TCGGTAGCTTTGAAGATCCT+TGG | - | chr2.4:61189463-61189482 | MS.gene02858:intron | 45.0% |
| ! | CGGTGGTAAGGTTTGATTCG+GGG | - | chr2.4:61189503-61189522 | MS.gene02858:intron | 50.0% |
| !! | AATGGCAAAAGCGTTAGCCG+AGG | - | chr2.4:61190322-61190341 | MS.gene02858:CDS | 50.0% |
| !! | GTAAGGTTTGATTCGGGGTG+AGG | - | chr2.4:61189508-61189527 | MS.gene02858:intron | 50.0% |
| AGTTTGGTACAAGGGGAGGC+TGG | - | chr2.4:61189945-61189964 | MS.gene02858:CDS | 55.0% | |
| GTAAGCTCCGGGCATAACCT+CGG | + | chr2.4:61190342-61190361 | None:intergenic | 55.0% | |
| GTTATGCCCGGAGCTTACCA+TGG | - | chr2.4:61190344-61190363 | MS.gene02858:CDS | 55.0% | |
| GCGTTAGCCGAGGTTATGCC+CGG | - | chr2.4:61190332-61190351 | MS.gene02858:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 61189426 | 61192014 | 61189426 | ID=MS.gene02858 |
| chr2.4 | mRNA | 61189426 | 61192014 | 61189426 | ID=MS.gene02858.t1;Parent=MS.gene02858 |
| chr2.4 | exon | 61191933 | 61192014 | 61191933 | ID=MS.gene02858.t1.exon1;Parent=MS.gene02858.t1 |
| chr2.4 | CDS | 61191933 | 61192014 | 61191933 | ID=cds.MS.gene02858.t1;Parent=MS.gene02858.t1 |
| chr2.4 | exon | 61191568 | 61191845 | 61191568 | ID=MS.gene02858.t1.exon2;Parent=MS.gene02858.t1 |
| chr2.4 | CDS | 61191568 | 61191845 | 61191568 | ID=cds.MS.gene02858.t1;Parent=MS.gene02858.t1 |
| chr2.4 | exon | 61189924 | 61190985 | 61189924 | ID=MS.gene02858.t1.exon3;Parent=MS.gene02858.t1 |
| chr2.4 | CDS | 61189924 | 61190985 | 61189924 | ID=cds.MS.gene02858.t1;Parent=MS.gene02858.t1 |
| chr2.4 | exon | 61189655 | 61189843 | 61189655 | ID=MS.gene02858.t1.exon4;Parent=MS.gene02858.t1 |
| chr2.4 | CDS | 61189655 | 61189843 | 61189655 | ID=cds.MS.gene02858.t1;Parent=MS.gene02858.t1 |
| chr2.4 | exon | 61189522 | 61189578 | 61189522 | ID=MS.gene02858.t1.exon5;Parent=MS.gene02858.t1 |
| chr2.4 | CDS | 61189522 | 61189578 | 61189522 | ID=cds.MS.gene02858.t1;Parent=MS.gene02858.t1 |
| chr2.4 | exon | 61189426 | 61189449 | 61189426 | ID=MS.gene02858.t1.exon6;Parent=MS.gene02858.t1 |
| chr2.4 | CDS | 61189426 | 61189449 | 61189426 | ID=cds.MS.gene02858.t1;Parent=MS.gene02858.t1 |
| Gene Sequence |
| Protein sequence |
