Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene028631.t1 | XP_003597300.2 | 96.8 | 221 | 6 | 1 | 4 | 223 | 31 | 251 | 5.10E-110 | 407.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene028631.t1 | O50055 | 45.3 | 53 | 29 | 0 | 123 | 175 | 282 | 334 | 9.1e-07 | 55.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene028631.t1 | Q2HU26 | 96.8 | 221 | 6 | 1 | 4 | 223 | 31 | 251 | 3.7e-110 | 407.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene028631.t1 | TR | Others |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene028631.t1 | MTR_2g096080 | 97.738 | 221 | 4 | 1 | 4 | 223 | 31 | 251 | 5.12e-161 | 445 |
MS.gene028631.t1 | MTR_4g061823 | 61.009 | 218 | 78 | 4 | 9 | 223 | 29 | 242 | 1.25e-78 | 236 |
MS.gene028631.t1 | MTR_4g061910 | 61.009 | 218 | 78 | 4 | 9 | 223 | 29 | 242 | 1.25e-78 | 236 |
MS.gene028631.t1 | MTR_8g098725 | 47.799 | 159 | 65 | 7 | 31 | 178 | 132 | 283 | 3.17e-29 | 111 |
MS.gene028631.t1 | MTR_8g098725 | 48.101 | 158 | 62 | 7 | 31 | 178 | 132 | 279 | 7.64e-29 | 110 |
MS.gene028631.t1 | MTR_5g010120 | 40.299 | 134 | 55 | 3 | 63 | 196 | 130 | 238 | 4.82e-21 | 88.6 |
MS.gene028631.t1 | MTR_1g073350 | 46.000 | 100 | 47 | 2 | 78 | 172 | 264 | 361 | 2.89e-20 | 88.6 |
MS.gene028631.t1 | MTR_2g068730 | 74.074 | 54 | 14 | 0 | 118 | 171 | 154 | 207 | 8.96e-20 | 85.5 |
MS.gene028631.t1 | MTR_1g044785 | 54.286 | 70 | 32 | 0 | 103 | 172 | 110 | 179 | 1.89e-19 | 83.6 |
MS.gene028631.t1 | MTR_1g008220 | 33.566 | 143 | 78 | 5 | 38 | 175 | 150 | 280 | 1.26e-16 | 77.0 |
MS.gene028631.t1 | MTR_3g091340 | 57.692 | 52 | 22 | 0 | 123 | 174 | 197 | 248 | 3.30e-15 | 72.8 |
MS.gene028631.t1 | MTR_3g091340 | 57.692 | 52 | 22 | 0 | 123 | 174 | 190 | 241 | 3.43e-15 | 72.4 |
MS.gene028631.t1 | MTR_3g091340 | 57.692 | 52 | 22 | 0 | 123 | 174 | 226 | 277 | 5.17e-15 | 72.4 |
MS.gene028631.t1 | MTR_1g013450 | 42.188 | 64 | 37 | 0 | 116 | 179 | 244 | 307 | 3.75e-11 | 62.0 |
MS.gene028631.t1 | MTR_4g128930 | 44.262 | 61 | 31 | 1 | 113 | 173 | 287 | 344 | 7.55e-11 | 61.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene028631.t1 | AT5G59990 | 52.899 | 138 | 52 | 2 | 42 | 179 | 91 | 215 | 1.13e-32 | 119 |
MS.gene028631.t1 | AT5G41380 | 42.135 | 178 | 74 | 6 | 48 | 219 | 151 | 305 | 3.80e-30 | 114 |
MS.gene028631.t1 | AT1G63820 | 47.581 | 124 | 56 | 2 | 79 | 197 | 139 | 258 | 6.45e-28 | 107 |
MS.gene028631.t1 | AT1G04500 | 35.632 | 174 | 81 | 5 | 10 | 172 | 180 | 333 | 3.39e-24 | 99.4 |
MS.gene028631.t1 | AT1G04500 | 35.632 | 174 | 81 | 5 | 10 | 172 | 180 | 333 | 3.39e-24 | 99.4 |
MS.gene028631.t1 | AT1G04500 | 35.632 | 174 | 81 | 5 | 10 | 172 | 171 | 324 | 3.41e-24 | 99.0 |
MS.gene028631.t1 | AT2G33350 | 46.535 | 101 | 47 | 2 | 79 | 172 | 244 | 344 | 1.85e-23 | 97.4 |
MS.gene028631.t1 | AT2G33350 | 46.535 | 101 | 47 | 2 | 79 | 172 | 255 | 355 | 2.24e-23 | 97.1 |
MS.gene028631.t1 | AT2G33350 | 46.535 | 101 | 47 | 2 | 79 | 172 | 264 | 364 | 2.69e-23 | 97.1 |
MS.gene028631.t1 | AT2G33350 | 46.078 | 102 | 47 | 3 | 79 | 172 | 255 | 356 | 3.44e-22 | 94.0 |
MS.gene028631.t1 | AT3G12890 | 54.651 | 86 | 38 | 1 | 107 | 191 | 119 | 204 | 1.16e-21 | 90.1 |
MS.gene028631.t1 | AT5G53420 | 34.884 | 129 | 68 | 4 | 44 | 171 | 70 | 183 | 1.76e-16 | 74.7 |
MS.gene028631.t1 | AT5G53420 | 34.884 | 129 | 68 | 4 | 44 | 171 | 70 | 183 | 1.76e-16 | 74.7 |
MS.gene028631.t1 | AT5G53420 | 34.884 | 129 | 68 | 4 | 44 | 171 | 70 | 183 | 1.76e-16 | 74.7 |
MS.gene028631.t1 | AT5G53420 | 34.884 | 129 | 68 | 4 | 44 | 171 | 149 | 262 | 4.00e-16 | 75.5 |
MS.gene028631.t1 | AT5G59990 | 45.872 | 109 | 46 | 2 | 42 | 150 | 91 | 186 | 2.55e-15 | 71.6 |
MS.gene028631.t1 | AT4G27900 | 32.787 | 122 | 59 | 3 | 76 | 174 | 140 | 261 | 1.04e-14 | 71.6 |
MS.gene028631.t1 | AT4G27900 | 32.787 | 122 | 59 | 3 | 76 | 174 | 140 | 261 | 1.04e-14 | 71.6 |
MS.gene028631.t1 | AT2G24790 | 43.056 | 72 | 37 | 1 | 101 | 168 | 199 | 270 | 2.91e-11 | 62.0 |
MS.gene028631.t1 | AT5G15850 | 45.283 | 53 | 29 | 0 | 123 | 175 | 282 | 334 | 5.41e-11 | 61.6 |
MS.gene028631.t1 | AT5G24930 | 43.333 | 60 | 34 | 0 | 115 | 174 | 283 | 342 | 8.05e-11 | 61.2 |
Find 52 sgRNAs with CRISPR-Local
Find 109 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CGGATAGGAGGCCACGAATT+AGG | 0.208419 | 2.3:-6430816 | MS.gene028631:CDS |
GAACTTTAACAAGAAAATTA+AGG | 0.269338 | 2.3:-6431807 | MS.gene028631:intron |
GGATAGGAGGCCACGAATTA+GGG | 0.287165 | 2.3:-6430815 | MS.gene028631:CDS |
AGGATGAAGAAGATGAAAAT+TGG | 0.295769 | 2.3:-6430717 | MS.gene028631:CDS |
AACAAGATTTGCAGCAACTA+TGG | 0.316149 | 2.3:+6430678 | None:intergenic |
CATTCCCTTCAGTACAATAA+TGG | 0.321357 | 2.3:-6432490 | MS.gene028631:CDS |
TTGCAGTACCGGCGATTTGC+AGG | 0.339328 | 2.3:-6432395 | MS.gene028631:intron |
TTTCAAGGAAGTTCTTCCTT+TGG | 0.354729 | 2.3:-6430646 | MS.gene028631:CDS |
GAGTCTAACTCATTGAAATC+AGG | 0.374546 | 2.3:+6432628 | None:intergenic |
CTTGTTCATGATGAGTTTCA+AGG | 0.385277 | 2.3:-6430661 | MS.gene028631:CDS |
TCCTATCCGCCAATGTCTTT+CGG | 0.395899 | 2.3:+6430830 | None:intergenic |
ATGTGGCTCCACTCGACTAT+AGG | 0.414777 | 2.3:+6430757 | None:intergenic |
GAAAGTAGTATGATCATAGA+AGG | 0.422699 | 2.3:-6431908 | MS.gene028631:CDS |
ATTCCCTTCAGTACAATAAT+GGG | 0.429789 | 2.3:-6432489 | MS.gene028631:CDS |
TGCATCAAGATTGGAGTACT+TGG | 0.434559 | 2.3:+6432529 | None:intergenic |
ATGCTCCTCTGCATCAAGAT+TGG | 0.438379 | 2.3:+6432520 | None:intergenic |
CATTGGTGGTGGGGAGGAAG+AGG | 0.451326 | 2.3:-6430737 | MS.gene028631:CDS |
GTGAGGAAAGTTTGCAGTAC+CGG | 0.459829 | 2.3:-6432406 | MS.gene028631:CDS |
GAGTGGAGCCACATTGGTGG+TGG | 0.477837 | 2.3:-6430748 | MS.gene028631:CDS |
TTGAAAGATACAGAAGAAAG+AGG | 0.482706 | 2.3:-6431838 | MS.gene028631:CDS |
AGTGGAGCCACATTGGTGGT+GGG | 0.516680 | 2.3:-6430747 | MS.gene028631:CDS |
AGCAGTGGCTATAGCAGCTA+TGG | 0.525220 | 2.3:-6432565 | MS.gene028631:CDS |
GTACTGCAAACTTTCCTCAC+TGG | 0.528382 | 2.3:+6432409 | None:intergenic |
GCAAAACGTCCCCTAATTCG+TGG | 0.530988 | 2.3:+6430805 | None:intergenic |
AGTCTAACTCATTGAAATCA+GGG | 0.536173 | 2.3:+6432629 | None:intergenic |
GAGTCCCATTATTGTACTGA+AGG | 0.542232 | 2.3:+6432485 | None:intergenic |
GTCGAGTGGAGCCACATTGG+TGG | 0.548825 | 2.3:-6430751 | MS.gene028631:CDS |
GCCGAAAGACATTGGCGGAT+AGG | 0.550818 | 2.3:-6430831 | MS.gene028631:CDS |
ACAGAAGAAAGAGGAATCAG+AGG | 0.553930 | 2.3:-6431829 | MS.gene028631:CDS |
GTATGTTTGCCGAAAGACAT+TGG | 0.562441 | 2.3:-6430839 | MS.gene028631:CDS |
GAGCCACATTGGTGGTGGGG+AGG | 0.566927 | 2.3:-6430743 | MS.gene028631:CDS |
GAAAGACATTGGCGGATAGG+AGG | 0.570627 | 2.3:-6430828 | MS.gene028631:CDS |
GTGGAGCCACATTGGTGGTG+GGG | 0.572282 | 2.3:-6430746 | MS.gene028631:CDS |
TCAACTCCGAGTTATTCAGC+TGG | 0.581544 | 2.3:+6432587 | None:intergenic |
TCAGCTGGGAGAGAGTGTCT+TGG | 0.586821 | 2.3:+6432602 | None:intergenic |
GTACTCCAATCTTGATGCAG+AGG | 0.591070 | 2.3:-6432525 | MS.gene028631:CDS |
ATACTACTTTCACTAGACAA+TGG | 0.602525 | 2.3:+6431920 | None:intergenic |
AAGATTGGAGTACTTGGAGA+AGG | 0.605160 | 2.3:+6432535 | None:intergenic |
CAACTCCGAGTTATTCAGCT+GGG | 0.608456 | 2.3:+6432588 | None:intergenic |
CTTCCTCCCCACCACCAATG+TGG | 0.613096 | 2.3:+6430740 | None:intergenic |
AGTCCCATTATTGTACTGAA+GGG | 0.624751 | 2.3:+6432486 | None:intergenic |
AGTGGCTATAGCAGCTATGG+TGG | 0.633412 | 2.3:-6432562 | MS.gene028631:CDS |
ATTCTAATATAATAGACCAA+AGG | 0.637951 | 2.3:+6430630 | None:intergenic |
GATAGGAGGCCACGAATTAG+GGG | 0.642140 | 2.3:-6430814 | MS.gene028631:CDS |
ATAGTGTACCTGCAAATCGC+CGG | 0.645719 | 2.3:+6432387 | None:intergenic |
ATAGTCGAGTGGAGCCACAT+TGG | 0.657395 | 2.3:-6430754 | MS.gene028631:CDS |
TCTCTCCCAGCTGAATAACT+CGG | 0.662391 | 2.3:-6432593 | MS.gene028631:CDS |
ATAAGAAACCTATAGTCGAG+TGG | 0.670337 | 2.3:-6430765 | MS.gene028631:CDS |
AATAACTCGGAGTTGAGCAG+TGG | 0.681830 | 2.3:-6432580 | MS.gene028631:CDS |
TGTTTGCCGAAAGACATTGG+CGG | 0.695673 | 2.3:-6430836 | MS.gene028631:CDS |
ACTCAGACGATGCTCCAGTG+AGG | 0.708922 | 2.3:-6432423 | MS.gene028631:CDS |
GCAACATAATCATCATCACG+TGG | 0.724747 | 2.3:-6431948 | MS.gene028631:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AGAAATTTTTATTTTTTTTG+CGG | + | chr2.3:6431102-6431121 | None:intergenic | 10.0% |
!!! | ATTTAAGAATGTTTTTTTAA+GGG | - | chr2.3:6431240-6431259 | MS.gene028631:intron | 10.0% |
!!! | TATTTAAGAATGTTTTTTTA+AGG | - | chr2.3:6431239-6431258 | MS.gene028631:intron | 10.0% |
!! | TTAAAAAAACTATGAATTTG+TGG | + | chr2.3:6431067-6431086 | None:intergenic | 15.0% |
!!! | CGTTAAACTTTTTTTTTTTT+TGG | - | chr2.3:6430971-6430990 | MS.gene028631:intron | 15.0% |
!!! | GAGTATATTGTTATTAATAA+GGG | + | chr2.3:6432088-6432107 | None:intergenic | 15.0% |
!!! | GTATACATTTTTTTTGAATT+TGG | + | chr2.3:6432127-6432146 | None:intergenic | 15.0% |
!!! | TTGAAAAACATTTTTTTTTG+CGG | + | chr2.3:6431130-6431149 | None:intergenic | 15.0% |
!! | AGTGATAGAAAATTTCATAA+AGG | + | chr2.3:6431704-6431723 | None:intergenic | 20.0% |
!! | ATAAAAAGAACAAGAAGTAA+TGG | - | chr2.3:6431638-6431657 | MS.gene028631:intron | 20.0% |
!! | GAACTTTAACAAGAAAATTA+AGG | - | chr2.3:6431466-6431485 | MS.gene028631:intron | 20.0% |
!! | GTGATAGAAAATTTCATAAA+GGG | + | chr2.3:6431703-6431722 | None:intergenic | 20.0% |
!! | TGATAGAAAATTTCATAAAG+GGG | + | chr2.3:6431702-6431721 | None:intergenic | 20.0% |
!! | TGGTGAAAAAATAAATTCAT+TGG | - | chr2.3:6431777-6431796 | MS.gene028631:intron | 20.0% |
!!! | ATTTGGAGTATATTGTTATT+TGG | + | chr2.3:6432093-6432112 | None:intergenic | 20.0% |
!!! | GGAGTATATTGTTATTAATA+AGG | + | chr2.3:6432089-6432108 | None:intergenic | 20.0% |
! | AAAACTTTGTGCATTTCTTT+AGG | + | chr2.3:6431175-6431194 | None:intergenic | 25.0% |
! | AACTAATTACGCATGTATAA+GGG | + | chr2.3:6431814-6431833 | None:intergenic | 25.0% |
! | AATTTGTACTAAATAGCGTA+TGG | + | chr2.3:6432283-6432302 | None:intergenic | 25.0% |
! | ACCTAAATGTAGTATAATGA+TGG | + | chr2.3:6432170-6432189 | None:intergenic | 25.0% |
! | TAACTAATTACGCATGTATA+AGG | + | chr2.3:6431815-6431834 | None:intergenic | 25.0% |
! | TCCATCATTATACTACATTT+AGG | - | chr2.3:6432166-6432185 | MS.gene028631:intron | 25.0% |
!!! | ATACTGTTTATTGATTCTAG+TGG | - | chr2.3:6432143-6432162 | MS.gene028631:intron | 25.0% |
!!! | TCGCATTTTAATAATTTTGG+AGG | - | chr2.3:6430936-6430955 | MS.gene028631:intron | 25.0% |
!!! | TGAATTTATTTTTTCACCAG+TGG | + | chr2.3:6431776-6431795 | None:intergenic | 25.0% |
AACTCGATTAGAATATTGAC+CGG | - | chr2.3:6432196-6432215 | MS.gene028631:intron | 30.0% | |
AGGATGAAGAAGATGAAAAT+TGG | - | chr2.3:6432556-6432575 | MS.gene028631:CDS | 30.0% | |
AGTCTAACTCATTGAAATCA+GGG | + | chr2.3:6430647-6430666 | None:intergenic | 30.0% | |
ATACTACTTTCACTAGACAA+TGG | + | chr2.3:6431356-6431375 | None:intergenic | 30.0% | |
ATTCCCTTCAGTACAATAAT+GGG | - | chr2.3:6430784-6430803 | MS.gene028631:CDS | 30.0% | |
CAAAGAGGAAAATAAATGCA+TGG | - | chr2.3:6431672-6431691 | MS.gene028631:intron | 30.0% | |
CTAAAAGACACTTCAAATCA+TGG | + | chr2.3:6431920-6431939 | None:intergenic | 30.0% | |
GAAAGTAGTATGATCATAGA+AGG | - | chr2.3:6431365-6431384 | MS.gene028631:intron | 30.0% | |
TTGAAAGATACAGAAGAAAG+AGG | - | chr2.3:6431435-6431454 | MS.gene028631:intron | 30.0% | |
! | ATTCTCACTTTCTTTTCTTC+TGG | + | chr2.3:6431416-6431435 | None:intergenic | 30.0% |
! | TTCTCACTTTCTTTTCTTCT+GGG | + | chr2.3:6431415-6431434 | None:intergenic | 30.0% |
! | TTGTTATTAATAAGGGCATG+TGG | + | chr2.3:6432081-6432100 | None:intergenic | 30.0% |
!! | AGCGTTATAGCATTTTAGTA+CGG | - | chr2.3:6432325-6432344 | MS.gene028631:intron | 30.0% |
!! | CGGTCGCATTTTAATAATTT+TGG | - | chr2.3:6430933-6430952 | MS.gene028631:intron | 30.0% |
!!! | ATTGTTTTAGATTGCAGTTG+CGG | - | chr2.3:6430913-6430932 | MS.gene028631:intron | 30.0% |
AACAAGATTTGCAGCAACTA+TGG | + | chr2.3:6432598-6432617 | None:intergenic | 35.0% | |
AGTCCCATTATTGTACTGAA+GGG | + | chr2.3:6430790-6430809 | None:intergenic | 35.0% | |
ATAAGAAACCTATAGTCGAG+TGG | - | chr2.3:6432508-6432527 | MS.gene028631:CDS | 35.0% | |
CATTCCCTTCAGTACAATAA+TGG | - | chr2.3:6430783-6430802 | MS.gene028631:CDS | 35.0% | |
CTTGTTCATGATGAGTTTCA+AGG | - | chr2.3:6432612-6432631 | MS.gene028631:CDS | 35.0% | |
GAGCAATTCAGCAAAAAAAG+CGG | + | chr2.3:6430829-6430848 | None:intergenic | 35.0% | |
GAGGTGTGAAAATCTTCTTA+CGG | - | chr2.3:6431973-6431992 | MS.gene028631:intron | 35.0% | |
GAGTCTAACTCATTGAAATC+AGG | + | chr2.3:6430648-6430667 | None:intergenic | 35.0% | |
TAGTCAGTGTATATAGCAAC+AGG | - | chr2.3:6431937-6431956 | MS.gene028631:CDS | 35.0% | |
TTTCAAGGAAGTTCTTCCTT+TGG | - | chr2.3:6432627-6432646 | MS.gene028631:CDS | 35.0% | |
! | AACAGGTTCAGAATTTTGTG+AGG | - | chr2.3:6431954-6431973 | MS.gene028631:CDS | 35.0% |
! | CGTTTTTCACAGAGGATTAA+CGG | - | chr2.3:6431299-6431318 | MS.gene028631:intron | 35.0% |
! | GCTAATAGTGTTGCTATAAC+TGG | + | chr2.3:6432232-6432251 | None:intergenic | 35.0% |
! | TAGTGTTGCTATAACTGGTT+TGG | + | chr2.3:6432227-6432246 | None:intergenic | 35.0% |
! | TTCTTTTCTTCTGGGCTATA+TGG | + | chr2.3:6431407-6431426 | None:intergenic | 35.0% |
!! | GTTATAGCATTTTAGTACGG+TGG | - | chr2.3:6432328-6432347 | MS.gene028631:intron | 35.0% |
ACAGAAGAAAGAGGAATCAG+AGG | - | chr2.3:6431444-6431463 | MS.gene028631:intron | 40.0% | |
ATGGACAGAACTGTACAAAG+AGG | - | chr2.3:6431657-6431676 | MS.gene028631:intron | 40.0% | |
ATTCAGCAAAAAAAGCGGAG+AGG | + | chr2.3:6430824-6430843 | None:intergenic | 40.0% | |
CTTGGAGAACAGAATCAATC+AGG | - | chr2.3:6432044-6432063 | MS.gene028631:intron | 40.0% | |
GAGTCCCATTATTGTACTGA+AGG | + | chr2.3:6430791-6430810 | None:intergenic | 40.0% | |
GCAACATAATCATCATCACG+TGG | - | chr2.3:6431325-6431344 | MS.gene028631:intron | 40.0% | |
GTATGTTTGCCGAAAGACAT+TGG | - | chr2.3:6432434-6432453 | MS.gene028631:CDS | 40.0% | |
TGCATTTCTTTAGGTACGCT+TGG | + | chr2.3:6431166-6431185 | None:intergenic | 40.0% | |
TTCAGCAAAAAAAGCGGAGA+GGG | + | chr2.3:6430823-6430842 | None:intergenic | 40.0% | |
! | AAGATTGGAGTACTTGGAGA+AGG | + | chr2.3:6430741-6430760 | None:intergenic | 40.0% |
! | TCATGCAACGTTTTTCACAG+AGG | - | chr2.3:6431291-6431310 | MS.gene028631:intron | 40.0% |
! | TGCATCAAGATTGGAGTACT+TGG | + | chr2.3:6430747-6430766 | None:intergenic | 40.0% |
!! | TATAACTGGTTTGGCAACAC+CGG | + | chr2.3:6432218-6432237 | None:intergenic | 40.0% |
AAAAAGCGGAGAGGGGATAA+TGG | + | chr2.3:6430815-6430834 | None:intergenic | 45.0% | |
AATAACTCGGAGTTGAGCAG+TGG | - | chr2.3:6430693-6430712 | MS.gene028631:CDS | 45.0% | |
ATAGTGTACCTGCAAATCGC+CGG | + | chr2.3:6430889-6430908 | None:intergenic | 45.0% | |
ATGCTCCTCTGCATCAAGAT+TGG | + | chr2.3:6430756-6430775 | None:intergenic | 45.0% | |
CAACTCCGAGTTATTCAGCT+GGG | + | chr2.3:6430688-6430707 | None:intergenic | 45.0% | |
CTCCAAGATCTTGACAGGAA+TGG | + | chr2.3:6432031-6432050 | None:intergenic | 45.0% | |
CTCCATTCCTGTCAAGATCT+TGG | - | chr2.3:6432026-6432045 | MS.gene028631:intron | 45.0% | |
CTGTTCTCCAAGATCTTGAC+AGG | + | chr2.3:6432036-6432055 | None:intergenic | 45.0% | |
GTACTCCAATCTTGATGCAG+AGG | - | chr2.3:6430748-6430767 | MS.gene028631:CDS | 45.0% | |
GTACTGCAAACTTTCCTCAC+TGG | + | chr2.3:6430867-6430886 | None:intergenic | 45.0% | |
GTGAGGAAAGTTTGCAGTAC+CGG | - | chr2.3:6430867-6430886 | MS.gene028631:intron | 45.0% | |
TCAACTCCGAGTTATTCAGC+TGG | + | chr2.3:6430689-6430708 | None:intergenic | 45.0% | |
TCAGCAAAAAAAGCGGAGAG+GGG | + | chr2.3:6430822-6430841 | None:intergenic | 45.0% | |
TCCTATCCGCCAATGTCTTT+CGG | + | chr2.3:6432446-6432465 | None:intergenic | 45.0% | |
TCTCTCCCAGCTGAATAACT+CGG | - | chr2.3:6430680-6430699 | MS.gene028631:CDS | 45.0% | |
TGTTTGCCGAAAGACATTGG+CGG | - | chr2.3:6432437-6432456 | MS.gene028631:CDS | 45.0% | |
AGCAGTGGCTATAGCAGCTA+TGG | - | chr2.3:6430708-6430727 | MS.gene028631:CDS | 50.0% | |
AGTGGCTATAGCAGCTATGG+TGG | - | chr2.3:6430711-6430730 | MS.gene028631:CDS | 50.0% | |
ATAGTCGAGTGGAGCCACAT+TGG | - | chr2.3:6432519-6432538 | MS.gene028631:CDS | 50.0% | |
ATGTGGCTCCACTCGACTAT+AGG | + | chr2.3:6432519-6432538 | None:intergenic | 50.0% | |
CTTATGCATGCTACCTCCAC+AGG | - | chr2.3:6431741-6431760 | MS.gene028631:intron | 50.0% | |
GATAGGAGGCCACGAATTAG+GGG | - | chr2.3:6432459-6432478 | MS.gene028631:CDS | 50.0% | |
GCAAAACGTCCCCTAATTCG+TGG | + | chr2.3:6432471-6432490 | None:intergenic | 50.0% | |
GGATAGGAGGCCACGAATTA+GGG | - | chr2.3:6432458-6432477 | MS.gene028631:CDS | 50.0% | |
! | GAAAGACATTGGCGGATAGG+AGG | - | chr2.3:6432445-6432464 | MS.gene028631:CDS | 50.0% |
ACTCAGACGATGCTCCAGTG+AGG | - | chr2.3:6430850-6430869 | MS.gene028631:intron | 55.0% | |
CGGATAGGAGGCCACGAATT+AGG | - | chr2.3:6432457-6432476 | MS.gene028631:CDS | 55.0% | |
! | AGTGGAGCCACATTGGTGGT+GGG | - | chr2.3:6432526-6432545 | MS.gene028631:CDS | 55.0% |
! | GCCGAAAGACATTGGCGGAT+AGG | - | chr2.3:6432442-6432461 | MS.gene028631:CDS | 55.0% |
!! | TCAGCTGGGAGAGAGTGTCT+TGG | + | chr2.3:6430674-6430693 | None:intergenic | 55.0% |
!! | TTGCAGTACCGGCGATTTGC+AGG | - | chr2.3:6430878-6430897 | MS.gene028631:intron | 55.0% |
CCACAGGTAGACACTGCCAC+TGG | - | chr2.3:6431757-6431776 | MS.gene028631:intron | 60.0% | |
CCAGTGGCAGTGTCTACCTG+TGG | + | chr2.3:6431760-6431779 | None:intergenic | 60.0% | |
CTTCCTCCCCACCACCAATG+TGG | + | chr2.3:6432536-6432555 | None:intergenic | 60.0% | |
GAGTGGAGCCACATTGGTGG+TGG | - | chr2.3:6432525-6432544 | MS.gene028631:CDS | 60.0% | |
GTCGAGTGGAGCCACATTGG+TGG | - | chr2.3:6432522-6432541 | MS.gene028631:CDS | 60.0% | |
GTGGCAGTGTCTACCTGTGG+AGG | + | chr2.3:6431757-6431776 | None:intergenic | 60.0% | |
!! | CATTGGTGGTGGGGAGGAAG+AGG | - | chr2.3:6432536-6432555 | MS.gene028631:CDS | 60.0% |
!! | GTGGAGCCACATTGGTGGTG+GGG | - | chr2.3:6432527-6432546 | MS.gene028631:CDS | 60.0% |
!! | GAGCCACATTGGTGGTGGGG+AGG | - | chr2.3:6432530-6432549 | MS.gene028631:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.3 | gene | 6430633 | 6432662 | 6430633 | ID=MS.gene028631 |
chr2.3 | mRNA | 6430633 | 6432662 | 6430633 | ID=MS.gene028631.t1;Parent=MS.gene028631 |
chr2.3 | exon | 6432396 | 6432662 | 6432396 | ID=MS.gene028631.t1.exon1;Parent=MS.gene028631.t1 |
chr2.3 | CDS | 6432396 | 6432662 | 6432396 | ID=cds.MS.gene028631.t1;Parent=MS.gene028631.t1 |
chr2.3 | exon | 6431808 | 6431984 | 6431808 | ID=MS.gene028631.t1.exon2;Parent=MS.gene028631.t1 |
chr2.3 | CDS | 6431808 | 6431984 | 6431808 | ID=cds.MS.gene028631.t1;Parent=MS.gene028631.t1 |
chr2.3 | exon | 6430633 | 6430860 | 6430633 | ID=MS.gene028631.t1.exon3;Parent=MS.gene028631.t1 |
chr2.3 | CDS | 6430633 | 6430860 | 6430633 | ID=cds.MS.gene028631.t1;Parent=MS.gene028631.t1 |
Gene Sequence |
Protein sequence |