AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene028697

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene028697.t1 MTR_6g471120 99.405 168 1 0 1 168 1 168 4.21e-121 338
MS.gene028697.t1 MTR_2g094720 98.810 168 2 0 1 168 1 168 1.22e-120 337
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene028697.t1 AT5G03500 77.381 168 38 0 1 168 11 178 1.21e-88 257
MS.gene028697.t1 AT5G03500 77.381 168 38 0 1 168 1 168 1.22e-88 256
MS.gene028697.t1 AT5G03500 77.381 168 38 0 1 168 1 168 1.22e-88 256
MS.gene028697.t1 AT5G03500 77.381 168 38 0 1 168 1 168 1.22e-88 256
MS.gene028697.t1 AT5G03500 77.381 168 38 0 1 168 1 168 1.22e-88 256
MS.gene028697.t1 AT5G03500 77.381 168 38 0 1 168 1 168 1.22e-88 256
MS.gene028697.t1 AT5G03500 77.381 168 38 0 1 168 1 168 1.22e-88 256
MS.gene028697.t1 AT5G03220 78.571 168 36 0 1 168 1 168 1.15e-83 244

Find 42 sgRNAs with CRISPR-Local

Find 245 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCAACTTTGATTCACATTT+TGG 0.169360 2.1:+8457590 MS.gene028697:CDS
AGAATTGCAACTACACATTT+TGG 0.197843 2.1:+8457338 MS.gene028697:CDS
AAGGAGCTGAGGTCACTTAA+TGG 0.305351 2.1:+8457315 MS.gene028697:CDS
TGTCCTCCACAGCTTGTTTA+CGG 0.307186 2.1:-8457629 None:intergenic
GAAGGAACTTATATCTGTTT+CGG 0.341977 2.1:+8455462 MS.gene028697:CDS
CACCACCACCACCTTATTAC+AGG 0.351353 2.1:+8455382 MS.gene028697:CDS
TCAATTGGTGGTGGAGGCTC+TGG 0.354209 2.1:-8455441 None:intergenic
CAGATATAAGTTCCTTCAAT+TGG 0.376411 2.1:-8455456 None:intergenic
GAATTCACTGCGTCCTCATC+AGG 0.378652 2.1:+8457452 MS.gene028697:CDS
GGAGGCTCTGGAGCAGACTC+AGG 0.379890 2.1:-8455429 None:intergenic
TCTTTGTACAGCCTGTAATA+AGG 0.385613 2.1:-8455393 None:intergenic
AAGCTGTGGAGGACATAAAT+AGG 0.396665 2.1:+8457637 MS.gene028697:CDS
GAGTCATTGGCAACACTTGA+TGG 0.406036 2.1:+8458834 MS.gene028697:CDS
CTGTAATAAGGTGGTGGTGG+TGG 0.416862 2.1:-8455381 None:intergenic
ACCCCTTGTTCTTCCAAGCT+TGG 0.441423 2.1:-8456976 None:intergenic
GTGTTGCCAATGACTCGTTA+AGG 0.463201 2.1:-8458827 None:intergenic
TATTCTAAAGGACCTACTAT+TGG 0.476581 2.1:+8457009 MS.gene028697:CDS
AAGAATCCTTAACGAGTCAT+TGG 0.477983 2.1:+8458821 MS.gene028697:CDS
TTAGATAGCCTACCAATAGT+AGG 0.500449 2.1:-8457021 None:intergenic
GAGCCTCCACCACCAATTGA+AGG 0.507691 2.1:+8455444 MS.gene028697:CDS
GTTCCTTCAATTGGTGGTGG+AGG 0.512465 2.1:-8455447 None:intergenic
ACTCTCCTTGCATATTGTGA+TGG 0.520397 2.1:-8457387 None:intergenic
TAAGTTCCTTCAATTGGTGG+TGG 0.528553 2.1:-8455450 None:intergenic
TAGTGATGTTCTACCAAGCT+TGG 0.528638 2.1:+8456963 MS.gene028697:CDS
CTACCAAGCTTGGAAGAACA+AGG 0.531498 2.1:+8456973 MS.gene028697:CDS
GAGGACGCAGTGAATTCAAA+AGG 0.536683 2.1:-8457446 None:intergenic
GTTCGCCAACTCTATTCTAA+AGG 0.538979 2.1:+8456997 MS.gene028697:CDS
TGTAATAAGGTGGTGGTGGT+GGG 0.546044 2.1:-8455380 None:intergenic
TAGGTCCTTTAGAATAGAGT+TGG 0.547460 2.1:-8457002 None:intergenic
ATATAAGTTCCTTCAATTGG+TGG 0.550214 2.1:-8455453 None:intergenic
GAGGCTCTGGAGCAGACTCA+GGG 0.562875 2.1:-8455428 None:intergenic
AGCCTGTAATAAGGTGGTGG+TGG 0.577433 2.1:-8455384 None:intergenic
ACCAAGCTTGGAAGAACAAG+GGG 0.595681 2.1:+8456975 MS.gene028697:CDS
TAGATTTCAAGAAGGAGCTG+AGG 0.608725 2.1:+8457304 MS.gene028697:intron
AGAGCGCCGTAAACAAGCTG+TGG 0.612592 2.1:+8457623 MS.gene028697:CDS
AGAGACCATCACAATATGCA+AGG 0.622612 2.1:+8457382 MS.gene028697:CDS
TACAGCCTGTAATAAGGTGG+TGG 0.625421 2.1:-8455387 None:intergenic
GGAACTTATATCTGTTTCGG+AGG 0.626605 2.1:+8455465 MS.gene028697:CDS
GCGCCGTAAACAAGCTGTGG+AGG 0.632418 2.1:+8457626 MS.gene028697:CDS
TACCAAGCTTGGAAGAACAA+GGG 0.632982 2.1:+8456974 MS.gene028697:CDS
GGAACATTGTATACCTGATG+AGG 0.634197 2.1:-8457465 None:intergenic
TTGTACAGCCTGTAATAAGG+TGG 0.655933 2.1:-8455390 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAATACAATCTATATAA+AGG - chr2.1:8458154-8458173 None:intergenic 10.0%
!! ATAATAATATTAAAATTGCA+AGG - chr2.1:8455516-8455535 None:intergenic 10.0%
!! TAATAATATTAAAATTGCAA+GGG - chr2.1:8455515-8455534 None:intergenic 10.0%
!!! TTGCAATTTTAATATTATTA+TGG + chr2.1:8455515-8455534 MS.gene028697:intron 10.0%
!! AAAGGAAAAAAATAATGATA+TGG - chr2.1:8456469-8456488 None:intergenic 15.0%
!! AAGGAAAAAAATAATGATAT+GGG - chr2.1:8456468-8456487 None:intergenic 15.0%
!! AATAATATTAAAATTGCAAG+GGG - chr2.1:8455514-8455533 None:intergenic 15.0%
!! ATGAAACAAATTTCAATAAA+GGG - chr2.1:8456582-8456601 None:intergenic 15.0%
!! GTATCATATATTTACTTTAT+AGG + chr2.1:8457563-8457582 MS.gene028697:intron 15.0%
!! TTGAAAAATAAGTTCAAAAT+GGG - chr2.1:8455860-8455879 None:intergenic 15.0%
!! TTTGAAAAATAAGTTCAAAA+TGG - chr2.1:8455861-8455880 None:intergenic 15.0%
!!! ATTCATATTTTAATTATGGA+AGG + chr2.1:8458125-8458144 MS.gene028697:intron 15.0%
!!! ATTTTGTTTTTTAGTTTCAT+TGG + chr2.1:8457678-8457697 MS.gene028697:intron 15.0%
!!! TGCTATTCATATTTTAATTA+TGG + chr2.1:8458121-8458140 MS.gene028697:intron 15.0%
!! AATGTAGTTAAAATTGATAG+TGG + chr2.1:8458389-8458408 MS.gene028697:intron 20.0%
!! AGGAATGATATCATTAAATT+TGG + chr2.1:8456655-8456674 MS.gene028697:intron 20.0%
!! ATTTGTTTCATGAGAATTAA+AGG + chr2.1:8456591-8456610 MS.gene028697:intron 20.0%
!! CATGAAACAAATTTCAATAA+AGG - chr2.1:8456583-8456602 None:intergenic 20.0%
!! GTATTTCATTAGAAAAAGTT+TGG - chr2.1:8458439-8458458 None:intergenic 20.0%
!! TAAACTCTAAATTGATTGAA+GGG + chr2.1:8456626-8456645 MS.gene028697:intron 20.0%
!! TCAAAGGAAATATCTTTAAA+AGG - chr2.1:8456487-8456506 None:intergenic 20.0%
!! TGAAACTAAAAAACAAAATC+AGG - chr2.1:8457677-8457696 None:intergenic 20.0%
!! TTAAACTCTAAATTGATTGA+AGG + chr2.1:8456625-8456644 MS.gene028697:intron 20.0%
!!! AACACATAAACAGATATTTT+TGG - chr2.1:8456869-8456888 None:intergenic 20.0%
!!! AACTTATTTTTCAAAGTGTT+TGG + chr2.1:8455866-8455885 MS.gene028697:intron 20.0%
!!! AAGCAAATAAAAGAACTTTT+GGG - chr2.1:8455779-8455798 None:intergenic 20.0%
!!! AATTAGCTTAAAATAGCTTA+TGG - chr2.1:8455957-8455976 None:intergenic 20.0%
!!! ACTTATTTTTCAAAGTGTTT+GGG + chr2.1:8455867-8455886 MS.gene028697:intron 20.0%
!!! ATTTTACCTAATTTTAGCTT+TGG + chr2.1:8455706-8455725 MS.gene028697:intron 20.0%
!!! GCTTTAATTATGTCATTTAA+TGG + chr2.1:8455670-8455689 MS.gene028697:intron 20.0%
!!! TAATTGTTTTATGATACGTA+TGG + chr2.1:8458720-8458739 MS.gene028697:intron 20.0%
!!! TTAGTTCATTCTTTTGAAAA+TGG + chr2.1:8457782-8457801 MS.gene028697:intron 20.0%
!!! TTATGGTTCTAATTACTATA+TGG + chr2.1:8455532-8455551 MS.gene028697:intron 20.0%
!!! TTCTCTTGTATTTCTATTTT+GGG - chr2.1:8457900-8457919 None:intergenic 20.0%
! AAGGTAAGATGTTAACTATA+AGG - chr2.1:8457281-8457300 None:intergenic 25.0%
! AATTTCAATAAAGGGTAGTT+TGG - chr2.1:8456574-8456593 None:intergenic 25.0%
! ACATATTAGGTTACAATGTT+AGG - chr2.1:8457126-8457145 None:intergenic 25.0%
! ATATAAACTTGCCTTTGATT+TGG + chr2.1:8457502-8457521 MS.gene028697:intron 25.0%
! ATGTATTTGAGAAGTTTCAA+AGG - chr2.1:8456503-8456522 None:intergenic 25.0%
! CAATCACAACAACAAAAAAA+TGG - chr2.1:8456329-8456348 None:intergenic 25.0%
! GACATGTAGAAATAAGAATT+AGG - chr2.1:8457992-8458011 None:intergenic 25.0%
! GTAGAAATAAGAATTAGGAT+AGG - chr2.1:8457987-8458006 None:intergenic 25.0%
! GTTAAAATGTCATCTAAACA+TGG + chr2.1:8456273-8456292 MS.gene028697:intron 25.0%
! TATAAACAGCAAAAAAATCC+AGG - chr2.1:8456720-8456739 None:intergenic 25.0%
! TCATGAGAATTAAAGGTTAT+TGG + chr2.1:8456598-8456617 MS.gene028697:intron 25.0%
! TCCTTCTTGAAATCTATAAA+AGG - chr2.1:8457300-8457319 None:intergenic 25.0%
! TTAATAATGCCTAAAAGATC+AGG - chr2.1:8457175-8457194 None:intergenic 25.0%
! TTTATATACTTATAGCTGTC+TGG - chr2.1:8457489-8457508 None:intergenic 25.0%
!! AAATACATCTTCGATAGTTT+TGG + chr2.1:8456515-8456534 MS.gene028697:intron 25.0%
!! AATTGATTGAAGGGAATTTT+AGG + chr2.1:8456635-8456654 MS.gene028697:intron 25.0%
!! ACCTTTTATAGATTTCAAGA+AGG + chr2.1:8457296-8457315 MS.gene028697:intron 25.0%
!! ACTTCATAGTTCTTTTTATG+AGG + chr2.1:8457194-8457213 MS.gene028697:intron 25.0%
!! ATTAGAAAAAGTTTGGTAAC+AGG - chr2.1:8458432-8458451 None:intergenic 25.0%
!! CTTAAGATTTGCGTATATTT+TGG + chr2.1:8456685-8456704 MS.gene028697:intron 25.0%
!! GAAGCAAATAAAAGAACTTT+TGG - chr2.1:8455780-8455799 None:intergenic 25.0%
!! TAACTTATGTTCTAGCTATT+AGG - chr2.1:8458065-8458084 None:intergenic 25.0%
!!! ACATTTTAACAGCTTTTGAA+AGG - chr2.1:8456263-8456282 None:intergenic 25.0%
!!! CATTTTAACAGCTTTTGAAA+GGG - chr2.1:8456262-8456281 None:intergenic 25.0%
!!! CATTTTTTTGTTGTTGTGAT+TGG + chr2.1:8456327-8456346 MS.gene028697:intron 25.0%
!!! CTATTTACTATCTTGTTGTT+TGG + chr2.1:8456299-8456318 MS.gene028697:intron 25.0%
!!! CTTCTCTTGTATTTCTATTT+TGG - chr2.1:8457901-8457920 None:intergenic 25.0%
!!! TTTCCATTTTTGAAGTCTTT+GGG - chr2.1:8456368-8456387 None:intergenic 25.0%
!!! TTTTAAGTTGTAACCTTCAT+GGG + chr2.1:8457739-8457758 MS.gene028697:intron 25.0%
!!! TTTTCCATTTTTGAAGTCTT+TGG - chr2.1:8456369-8456388 None:intergenic 25.0%
!!! TTTTTTAGTTTCATTGGCTA+TGG + chr2.1:8457684-8457703 MS.gene028697:intron 25.0%
AAAATGTACAAAGATACACC+AGG - chr2.1:8458533-8458552 None:intergenic 30.0%
AAATGACTCTAATAGTGCTT+TGG + chr2.1:8458571-8458590 MS.gene028697:intron 30.0%
AATCAGTTAAGGTTGTTTAC+TGG - chr2.1:8457853-8457872 None:intergenic 30.0%
AATTGCAATGCTTATCCAAA+CGG + chr2.1:8456105-8456124 MS.gene028697:intron 30.0%
ACCTTATGAAAACAGCTTAT+AGG + chr2.1:8455996-8456015 MS.gene028697:intron 30.0%
AGAACCTTCTACAAATTTGT+TGG + chr2.1:8457711-8457730 MS.gene028697:intron 30.0%
ATATAAGTTCCTTCAATTGG+TGG - chr2.1:8455456-8455475 None:intergenic 30.0%
ATGTTCCAAGAGTTTACTAA+AGG - chr2.1:8458017-8458036 None:intergenic 30.0%
ATGTTTGATGCTATGATTTC+TGG - chr2.1:8458481-8458500 None:intergenic 30.0%
CAACTCTAACTATTTGGTTA+AGG + chr2.1:8456233-8456252 MS.gene028697:intron 30.0%
CAGATATAAGTTCCTTCAAT+TGG - chr2.1:8455459-8455478 None:intergenic 30.0%
CATACCAACAAATTTGTAGA+AGG - chr2.1:8457718-8457737 None:intergenic 30.0%
CTTTCAATAAAACAAAACCC+TGG - chr2.1:8458251-8458270 None:intergenic 30.0%
GAAGGAACTTATATCTGTTT+CGG + chr2.1:8455462-8455481 MS.gene028697:CDS 30.0%
GTTAGTTCACCAAAATTGAT+AGG + chr2.1:8458627-8458646 MS.gene028697:intron 30.0%
TACAGCGAAAATTTCAGAAA+CGG - chr2.1:8457546-8457565 None:intergenic 30.0%
TTTATGAGGAAATGCTGAAT+TGG + chr2.1:8457208-8457227 MS.gene028697:intron 30.0%
! AAAAAGTTTGGTAACAGGAT+TGG - chr2.1:8458427-8458446 None:intergenic 30.0%
! AAACAACCTTAACTGATTCA+GGG + chr2.1:8457855-8457874 MS.gene028697:intron 30.0%
! AAGAGTTGATTATAACTCTC+TGG + chr2.1:8458268-8458287 MS.gene028697:intron 30.0%
! ACTCTTGGAACATTTTCATT+AGG + chr2.1:8458024-8458043 MS.gene028697:intron 30.0%
! AGAATTGCAACTACACATTT+TGG + chr2.1:8457338-8457357 MS.gene028697:CDS 30.0%
! AGCAACTTTGATTCACATTT+TGG + chr2.1:8457590-8457609 MS.gene028697:CDS 30.0%
! ATTTTATGCAGAAGCCTATT+TGG + chr2.1:8456893-8456912 MS.gene028697:intron 30.0%
! CTTTTCCATAACTTGAAAGA+CGG + chr2.1:8458505-8458524 MS.gene028697:intron 30.0%
! TAAACAACCTTAACTGATTC+AGG + chr2.1:8457854-8457873 MS.gene028697:intron 30.0%
! TATTCTAAAGGACCTACTAT+TGG + chr2.1:8457009-8457028 MS.gene028697:CDS 30.0%
! TGACACTTGAATAGACATTT+TGG + chr2.1:8455618-8455637 MS.gene028697:intron 30.0%
! TTTGGATAAGCATTGCAATT+AGG - chr2.1:8456105-8456124 None:intergenic 30.0%
!! AGAATGAACTAACTTGTTTG+TGG - chr2.1:8457774-8457793 None:intergenic 30.0%
!! CTTGATTGGTCTAATTTATG+AGG + chr2.1:8458597-8458616 MS.gene028697:intron 30.0%
!! TAAAAGAGAAGCATTGTCTT+TGG - chr2.1:8458692-8458711 None:intergenic 30.0%
!! TATTTTTCAAAGTGTTTGGG+TGG + chr2.1:8455870-8455889 MS.gene028697:intron 30.0%
!! TCCTATAAGCTGTTTTCATA+AGG - chr2.1:8456000-8456019 None:intergenic 30.0%
!! TTGAATAGACATTTTGGAAG+AGG + chr2.1:8455624-8455643 MS.gene028697:intron 30.0%
!!! CTTTTAAGTTGTAACCTTCA+TGG + chr2.1:8457738-8457757 MS.gene028697:intron 30.0%
AAGAATCCTTAACGAGTCAT+TGG + chr2.1:8458821-8458840 MS.gene028697:CDS 35.0%
AAGCCCAAAGACTTCAAAAA+TGG + chr2.1:8456362-8456381 MS.gene028697:intron 35.0%
ACAGCAAAAAAATCCAGGTT+TGG - chr2.1:8456715-8456734 None:intergenic 35.0%
ACAGCGAAAATTTCAGAAAC+GGG - chr2.1:8457545-8457564 None:intergenic 35.0%
ACTATACACGGTCACATATT+AGG - chr2.1:8457139-8457158 None:intergenic 35.0%
ACTATCTGTGACAACTCATA+CGG - chr2.1:8457094-8457113 None:intergenic 35.0%
AGACTCTAATTTCTTCACAC+TGG + chr2.1:8457821-8457840 MS.gene028697:intron 35.0%
ATTGCAATGCTTATCCAAAC+GGG + chr2.1:8456106-8456125 MS.gene028697:intron 35.0%
ATTGCAATTAGGCGTTTCTA+AGG - chr2.1:8456094-8456113 None:intergenic 35.0%
CACATGCCAAAGCTAAAATT+AGG - chr2.1:8455715-8455734 None:intergenic 35.0%
CGATACACATTTGATACTAC+CGG + chr2.1:8456416-8456435 MS.gene028697:intron 35.0%
CGGTAGTATCAAATGTGTAT+CGG - chr2.1:8456418-8456437 None:intergenic 35.0%
CTGAAAAGAGAAGAGAAAGT+AGG - chr2.1:8458783-8458802 None:intergenic 35.0%
GACTCTAATTTCTTCACACT+GGG + chr2.1:8457822-8457841 MS.gene028697:intron 35.0%
GTCTTCCTTTAGTAAACTCT+TGG + chr2.1:8458009-8458028 MS.gene028697:intron 35.0%
TATCGGTATCAGATACATGT+TGG - chr2.1:8456401-8456420 None:intergenic 35.0%
TCAACCTTTCTCAAGGTTTA+TGG - chr2.1:8456798-8456817 None:intergenic 35.0%
TCTTTGTACAGCCTGTAATA+AGG - chr2.1:8455396-8455415 None:intergenic 35.0%
TGAATTCCCTGAATCAGTTA+AGG - chr2.1:8457864-8457883 None:intergenic 35.0%
TGCTAGTTAGTTGTTGTATC+TGG - chr2.1:8457960-8457979 None:intergenic 35.0%
TTAGATAGCCTACCAATAGT+AGG - chr2.1:8457024-8457043 None:intergenic 35.0%
! ATGGTTGCTCCTATCAATTT+TGG - chr2.1:8458639-8458658 None:intergenic 35.0%
! CAAGTGTCATTGTAATAGCA+GGG - chr2.1:8455607-8455626 None:intergenic 35.0%
! CACTTTCCCATTTTAAACTG+CGG + chr2.1:8458334-8458353 MS.gene028697:intron 35.0%
! CTACTTTCTCTTCTCTTTTC+AGG + chr2.1:8458781-8458800 MS.gene028697:intron 35.0%
! TCAAGTGTCATTGTAATAGC+AGG - chr2.1:8455608-8455627 None:intergenic 35.0%
! TCTAAAAGCTTGGAGCTTTT+TGG + chr2.1:8455741-8455760 MS.gene028697:intron 35.0%
! TGCTGTTTATATCTGTGATC+AGG + chr2.1:8456729-8456748 MS.gene028697:intron 35.0%
! TGTGCGTTATTCTAAAAGCT+TGG + chr2.1:8455731-8455750 MS.gene028697:intron 35.0%
! TTATGTTCTAGCTATTAGGC+AGG - chr2.1:8458061-8458080 None:intergenic 35.0%
! TTCCATCCGCAGTTTAAAAT+GGG - chr2.1:8458343-8458362 None:intergenic 35.0%
!! ATTAGGCGTTTCTAAGGTAA+AGG - chr2.1:8456088-8456107 None:intergenic 35.0%
!! CGTCTTTCAAGTTATGGAAA+AGG - chr2.1:8458507-8458526 None:intergenic 35.0%
!! TAGGTCCTTTAGAATAGAGT+TGG - chr2.1:8457005-8457024 None:intergenic 35.0%
!! TAGTGCTTTGGAAACTTGAT+TGG + chr2.1:8458583-8458602 MS.gene028697:intron 35.0%
!! TTAGGCGTTTCTAAGGTAAA+GGG - chr2.1:8456087-8456106 None:intergenic 35.0%
!!! TACATCTTCGATAGTTTTGG+TGG + chr2.1:8456518-8456537 MS.gene028697:intron 35.0%
!!! TGGGATACTTTTGAGACTTA+TGG - chr2.1:8456449-8456468 None:intergenic 35.0%
AAGCTGTGGAGGACATAAAT+AGG + chr2.1:8457637-8457656 MS.gene028697:CDS 40.0%
ACGATATGATCACGCCAAAT+AGG - chr2.1:8456910-8456929 None:intergenic 40.0%
ACTCTCCTTGCATATTGTGA+TGG - chr2.1:8457390-8457409 None:intergenic 40.0%
ACTGAACTCAACCTTTCTCA+AGG - chr2.1:8456805-8456824 None:intergenic 40.0%
AGAGACCATCACAATATGCA+AGG + chr2.1:8457382-8457401 MS.gene028697:CDS 40.0%
AGTCGTGAAATCAACCTCAT+GGG - chr2.1:8456183-8456202 None:intergenic 40.0%
ATAACTTGAAAGACGGTTCC+TGG + chr2.1:8458512-8458531 MS.gene028697:intron 40.0%
ATGACAAAACTGGGCAAAGA+AGG - chr2.1:8458667-8458686 None:intergenic 40.0%
ATGGGTGTATGAACCTATGA+GGG - chr2.1:8458219-8458238 None:intergenic 40.0%
CACATTTGATACTACCGGAT+AGG + chr2.1:8456421-8456440 MS.gene028697:intron 40.0%
CCAACCATAAACCTTGAGAA+AGG + chr2.1:8456791-8456810 MS.gene028697:intron 40.0%
CCACAAGTCTAGACTATACA+CGG - chr2.1:8457151-8457170 None:intergenic 40.0%
CCTTTCTCAAGGTTTATGGT+TGG - chr2.1:8456794-8456813 None:intergenic 40.0%
CGTGTATAGTCTAGACTTGT+GGG + chr2.1:8457149-8457168 MS.gene028697:intron 40.0%
CTAAAGGACCTACTATTGGT+AGG + chr2.1:8457013-8457032 MS.gene028697:intron 40.0%
CTTCCATCCGCAGTTTAAAA+TGG - chr2.1:8458344-8458363 None:intergenic 40.0%
GAGTTCAGTCTTGCAAAACA+GGG + chr2.1:8456816-8456835 MS.gene028697:intron 40.0%
GCAAAAAAATCCAGGTTTGG+TGG - chr2.1:8456712-8456731 None:intergenic 40.0%
GGAACATTGTATACCTGATG+AGG - chr2.1:8457468-8457487 None:intergenic 40.0%
GGAACTTATATCTGTTTCGG+AGG + chr2.1:8455465-8455484 MS.gene028697:CDS 40.0%
GTGGATTTAGAAACCCATGA+AGG - chr2.1:8457755-8457774 None:intergenic 40.0%
GTTCGCCAACTCTATTCTAA+AGG + chr2.1:8456997-8457016 MS.gene028697:CDS 40.0%
GTTGTCACAGATAGTTGTGA+AGG + chr2.1:8457099-8457118 MS.gene028697:intron 40.0%
TAAGTTCCTTCAATTGGTGG+TGG - chr2.1:8455453-8455472 None:intergenic 40.0%
TACCAAGCTTGGAAGAACAA+GGG + chr2.1:8456974-8456993 MS.gene028697:CDS 40.0%
TAGATTTCAAGAAGGAGCTG+AGG + chr2.1:8457304-8457323 MS.gene028697:intron 40.0%
TAGTGATGTTCTACCAAGCT+TGG + chr2.1:8456963-8456982 MS.gene028697:CDS 40.0%
TCAAGGTTTATGGTTGGATG+AGG - chr2.1:8456788-8456807 None:intergenic 40.0%
TCTTTGGCCATGACAAAACT+GGG - chr2.1:8458676-8458695 None:intergenic 40.0%
TGACAAAACTGGGCAAAGAA+GGG - chr2.1:8458666-8458685 None:intergenic 40.0%
TGAGACTTATGGTACCTATC+CGG - chr2.1:8456438-8456457 None:intergenic 40.0%
TGAGTTCAGTCTTGCAAAAC+AGG + chr2.1:8456815-8456834 MS.gene028697:intron 40.0%
TGGCAGCAACTCTAACTATT+TGG + chr2.1:8456227-8456246 MS.gene028697:intron 40.0%
TGTATCTGGTGAGTCAGTTA+AGG - chr2.1:8457946-8457965 None:intergenic 40.0%
TTGTACAGCCTGTAATAAGG+TGG - chr2.1:8455393-8455412 None:intergenic 40.0%
! TTCCCATTTTAAACTGCGGA+TGG + chr2.1:8458338-8458357 MS.gene028697:intron 40.0%
! TTTGAAGTCTTTGGGCTTCA+TGG - chr2.1:8456360-8456379 None:intergenic 40.0%
!! ACCAGAAGCATCCAAATCAA+AGG - chr2.1:8457516-8457535 None:intergenic 40.0%
!! AGGAACCGTCTTTCAAGTTA+TGG - chr2.1:8458513-8458532 None:intergenic 40.0%
!! ATATTTTGGACCACCAAACC+TGG + chr2.1:8456699-8456718 MS.gene028697:intron 40.0%
!! ATCAGGTTGAGTTCAGTCTA+GGG + chr2.1:8456746-8456765 MS.gene028697:intron 40.0%
!! CTTTCTCTTCTCTTTTCAGG+AGG + chr2.1:8458784-8458803 MS.gene028697:intron 40.0%
!! TTCTTTGCCCAGTTTTGTCA+TGG + chr2.1:8458666-8458685 MS.gene028697:intron 40.0%
AAAACCCTGGTAAGTAGCCA+TGG - chr2.1:8458238-8458257 None:intergenic 45.0%
AAACCCTGGTAAGTAGCCAT+GGG - chr2.1:8458237-8458256 None:intergenic 45.0%
AAGGAATGGTTAGACCCATG+AGG + chr2.1:8456166-8456185 MS.gene028697:intron 45.0%
AAGGAGCTGAGGTCACTTAA+TGG + chr2.1:8457315-8457334 MS.gene028697:CDS 45.0%
AAGTCTTTGGGCTTCATGGA+TGG - chr2.1:8456356-8456375 None:intergenic 45.0%
ACCAAGCTTGGAAGAACAAG+GGG + chr2.1:8456975-8456994 MS.gene028697:CDS 45.0%
ACTCAAATGAGTGACCTCCT+AGG + chr2.1:8456200-8456219 MS.gene028697:intron 45.0%
CATGACAACTTTGCTGCGTT+TGG + chr2.1:8455818-8455837 MS.gene028697:intron 45.0%
CATGGGTGTATGAACCTATG+AGG - chr2.1:8458220-8458239 None:intergenic 45.0%
CCGTGTATAGTCTAGACTTG+TGG + chr2.1:8457148-8457167 MS.gene028697:intron 45.0%
CTACCAAGCTTGGAAGAACA+AGG + chr2.1:8456973-8456992 MS.gene028697:CDS 45.0%
CTAGTAGAGACACCATGCAT+TGG - chr2.1:8457245-8457264 None:intergenic 45.0%
CTCATAGGTTCATACACCCA+TGG + chr2.1:8458218-8458237 MS.gene028697:intron 45.0%
GAGGACGCAGTGAATTCAAA+AGG - chr2.1:8457449-8457468 None:intergenic 45.0%
GAGTCATTGGCAACACTTGA+TGG + chr2.1:8458834-8458853 MS.gene028697:CDS 45.0%
GAGTCGTGAAATCAACCTCA+TGG - chr2.1:8456184-8456203 None:intergenic 45.0%
GGTGAGTCAGTTAAGGTTGT+TGG - chr2.1:8457939-8457958 None:intergenic 45.0%
GTCTTTGGCCATGACAAAAC+TGG - chr2.1:8458677-8458696 None:intergenic 45.0%
GTGTTGCCAATGACTCGTTA+AGG - chr2.1:8458830-8458849 None:intergenic 45.0%
GTTAGAGTAAGCTCCCATCA+TGG + chr2.1:8456135-8456154 MS.gene028697:intron 45.0%
TACAGCCTGTAATAAGGTGG+TGG - chr2.1:8455390-8455409 None:intergenic 45.0%
TCATGGCAGGGTTTAAGGAA+TGG + chr2.1:8456152-8456171 MS.gene028697:intron 45.0%
TCCTTAAACCCTGCCATGAT+GGG - chr2.1:8456151-8456170 None:intergenic 45.0%
TGCAAAACCCGACGAATCTA+AGG + chr2.1:8458184-8458203 MS.gene028697:intron 45.0%
TTATGGTTGGATGAGGCACA+TGG - chr2.1:8456781-8456800 None:intergenic 45.0%
TTCCTTAAACCCTGCCATGA+TGG - chr2.1:8456152-8456171 None:intergenic 45.0%
! ACTTGTGGGCCTGATCTTTT+AGG + chr2.1:8457163-8457182 MS.gene028697:intron 45.0%
! TGTCCTCCACAGCTTGTTTA+CGG - chr2.1:8457632-8457651 None:intergenic 45.0%
!! GATCAGGTTGAGTTCAGTCT+AGG + chr2.1:8456745-8456764 MS.gene028697:intron 45.0%
!! GCCTTTGATTTGGATGCTTC+TGG + chr2.1:8457512-8457531 MS.gene028697:intron 45.0%
!! GTTTTGGTGGAGACAAGGAT+TGG + chr2.1:8456531-8456550 MS.gene028697:intron 45.0%
!! TGTAATAAGGTGGTGGTGGT+GGG - chr2.1:8455383-8455402 None:intergenic 45.0%
!!! CGATAGTTTTGGTGGAGACA+AGG + chr2.1:8456526-8456545 MS.gene028697:intron 45.0%
AATGCTTATCCAAACGGGCC+TGG + chr2.1:8456111-8456130 MS.gene028697:intron 50.0%
ACACCCATGGCTACTTACCA+GGG + chr2.1:8458231-8458250 MS.gene028697:intron 50.0%
ACCCCTTGTTCTTCCAAGCT+TGG - chr2.1:8456979-8456998 None:intergenic 50.0%
AGAGTTGCTGCCATATGCCT+AGG - chr2.1:8456220-8456239 None:intergenic 50.0%
AGTAAGCTCCCATCATGGCA+GGG + chr2.1:8456140-8456159 MS.gene028697:intron 50.0%
CACCACCACCACCTTATTAC+AGG + chr2.1:8455382-8455401 MS.gene028697:CDS 50.0%
CTGGGCAAAGAAGGGAGAAA+TGG - chr2.1:8458658-8458677 None:intergenic 50.0%
GAATTCACTGCGTCCTCATC+AGG + chr2.1:8457452-8457471 MS.gene028697:CDS 50.0%
GACCAAGCCTTAGATTCGTC+GGG - chr2.1:8458194-8458213 None:intergenic 50.0%
GGACCAAGCCTTAGATTCGT+CGG - chr2.1:8458195-8458214 None:intergenic 50.0%
GGTGTATGAACCTATGAGGG+AGG - chr2.1:8458216-8458235 None:intergenic 50.0%
TACACCCATGGCTACTTACC+AGG + chr2.1:8458230-8458249 MS.gene028697:intron 50.0%
TCCCATCATGGCAGGGTTTA+AGG + chr2.1:8456147-8456166 MS.gene028697:intron 50.0%
TGAGTGACCTCCTAGGCATA+TGG + chr2.1:8456207-8456226 MS.gene028697:intron 50.0%
TGGGAGCTTACTCTAACACC+AGG - chr2.1:8456132-8456151 None:intergenic 50.0%
! AACCCGACGAATCTAAGGCT+TGG + chr2.1:8458189-8458208 MS.gene028697:intron 50.0%
! AGCCTGTAATAAGGTGGTGG+TGG - chr2.1:8455387-8455406 None:intergenic 50.0%
!! CTGTAATAAGGTGGTGGTGG+TGG - chr2.1:8455384-8455403 None:intergenic 50.0%
!! GTCACAAAAGCGCCAATGCA+TGG + chr2.1:8457230-8457249 MS.gene028697:intron 50.0%
!! GTTCCTTCAATTGGTGGTGG+AGG - chr2.1:8455450-8455469 None:intergenic 50.0%
ACTCTAACACCAGGCCCGTT+TGG - chr2.1:8456123-8456142 None:intergenic 55.0%
GAGCCTCCACCACCAATTGA+AGG + chr2.1:8455444-8455463 MS.gene028697:CDS 55.0%
GAGTAAGCTCCCATCATGGC+AGG + chr2.1:8456139-8456158 MS.gene028697:intron 55.0%
GTTGCTGCCATATGCCTAGG+AGG - chr2.1:8456217-8456236 None:intergenic 55.0%
! AAGGCTTGGTCCTCCCTCAT+AGG + chr2.1:8458203-8458222 MS.gene028697:intron 55.0%
!! AGAGCGCCGTAAACAAGCTG+TGG + chr2.1:8457623-8457642 MS.gene028697:CDS 55.0%
!! TCAATTGGTGGTGGAGGCTC+TGG - chr2.1:8455444-8455463 None:intergenic 55.0%
GCGCCGTAAACAAGCTGTGG+AGG + chr2.1:8457626-8457645 MS.gene028697:CDS 60.0%
!! GAGGCTCTGGAGCAGACTCA+GGG - chr2.1:8455431-8455450 None:intergenic 60.0%
!! GGAGGCTCTGGAGCAGACTC+AGG - chr2.1:8455432-8455451 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 8455363 8458863 8455363 ID=MS.gene028697
chr2.1 mRNA 8455363 8458863 8455363 ID=MS.gene028697.t1;Parent=MS.gene028697
chr2.1 exon 8455363 8455497 8455363 ID=MS.gene028697.t1.exon1;Parent=MS.gene028697.t1
chr2.1 CDS 8455363 8455497 8455363 ID=cds.MS.gene028697.t1;Parent=MS.gene028697.t1
chr2.1 exon 8456961 8457030 8456961 ID=MS.gene028697.t1.exon2;Parent=MS.gene028697.t1
chr2.1 CDS 8456961 8457030 8456961 ID=cds.MS.gene028697.t1;Parent=MS.gene028697.t1
chr2.1 exon 8457307 8457473 8457307 ID=MS.gene028697.t1.exon3;Parent=MS.gene028697.t1
chr2.1 CDS 8457307 8457473 8457307 ID=cds.MS.gene028697.t1;Parent=MS.gene028697.t1
chr2.1 exon 8457585 8457658 8457585 ID=MS.gene028697.t1.exon4;Parent=MS.gene028697.t1
chr2.1 CDS 8457585 8457658 8457585 ID=cds.MS.gene028697.t1;Parent=MS.gene028697.t1
chr2.1 exon 8458803 8458863 8458803 ID=MS.gene028697.t1.exon5;Parent=MS.gene028697.t1
chr2.1 CDS 8458803 8458863 8458803 ID=cds.MS.gene028697.t1;Parent=MS.gene028697.t1
Gene Sequence

>MS.gene028697

ATGGCAACGGCAACATACCCACCACCACCACCTTATTACAGGCTGTACAAAGATTATGTGCAAGACCCTGAGTCTGCTCCAGAGCCTCCACCACCAATTGAAGGAACTTATATCTGTTTCGGAGGCAGTTACACTGTGAGCTTTTTCACCCCTTGCAATTTTAATATTATTATGGTTCTAATTACTATATGGATAAATAGATTAAATAGCTATTTATTCGAGACGATATTGCTAAGATAAGCCCTGCTATTACAATGACACTTGAATAGACATTTTGGAAGAGGAACTTGTGCAGAATGAAAAGTTAGCTTTAATTATGTCATTTAATGGAAAATTAGTATTTATTTTACCTAATTTTAGCTTTGGCATGTGCGTTATTCTAAAAGCTTGGAGCTTTTTGGTATATAAAGAAACCCAAAAGTTCTTTTATTTGCTTCAAAAGTTGTTTTAATGAACATGACAACTTTGCTGCGTTTGGATTGACTTATGAATATCCCATTTTGAACTTATTTTTCAAAGTGTTTGGGTGGTCTTAAGTAAACAACTTTGACTTCTTTTTTTTTTTTTGAATAAAAACAACTTATGACATGTCCATAAGCTATTTTAAGCTAATTTCAATAAGCTCTCTAGAATACCTTATGAAAACAGCTTATAGGAAAACAATTTGACTGTGTTTTGTTTGATCATAGAAATAACTTATACGTAAGTGCTTATTTAATAACCCTTTACCTTAGAAACGCCTAATTGCAATGCTTATCCAAACGGGCCTGGTGTTAGAGTAAGCTCCCATCATGGCAGGGTTTAAGGAATGGTTAGACCCATGAGGTTGATTTCACGACTCAAATGAGTGACCTCCTAGGCATATGGCAGCAACTCTAACTATTTGGTTAAGGTTTCCCTTTCAAAAGCTGTTAAAATGTCATCTAAACATGGTTTCTATTTACTATCTTGTTGTTTGGTATGCCATTTTTTTGTTGTTGTGATTGGATGCCATCCATGAAGCCCAAAGACTTCAAAAATGGAAAAGTACTGTGTCCAACATGTATCTGATACCGATACACATTTGATACTACCGGATAGGTACCATAAGTCTCAAAAGTATCCCATATCATTATTTTTTTCCTTTTAAAGATATTTCCTTTGAAACTTCTCAAATACATCTTCGATAGTTTTGGTGGAGACAAGGATTGGAAATATTAATACTTTCTCCAAACTACCCTTTATTGAAATTTGTTTCATGAGAATTAAAGGTTATTGGAATGTTAAACTCTAAATTGATTGAAGGGAATTTTAGGAATGATATCATTAAATTTGGTAATGTACTTAAGATTTGCGTATATTTTGGACCACCAAACCTGGATTTTTTTGCTGTTTATATCTGTGATCAGGTTGAGTTCAGTCTAGGGTTTTATTAACCATGTGCCTCATCCAACCATAAACCTTGAGAAAGGTTGAGTTCAGTCTTGCAAAACAGGGTTTCTTATTAGTTTGTGATGTAATTATCCAAAAATATCTGTTTATGTGTTTGAGATTTTATGCAGAAGCCTATTTGGCGTGATCATATCGTGTTAATATTTTGTTTCTTTATTTTGACACAGACTAGTGATGTTCTACCAAGCTTGGAAGAACAAGGGGTTCGCCAACTCTATTCTAAAGGACCTACTATTGGTAGGCTATCTAATGCTTTTTTTTTTATGCTCAGTTAAATCTGAAAATGTTGTGAAGTGACCGTATGAGTTGTCACAGATAGTTGTGAAGGACCTAACATTGTAACCTAATATGTGACCGTGTATAGTCTAGACTTGTGGGCCTGATCTTTTAGGCATTATTAACTTCATAGTTCTTTTTATGAGGAAATGCTGAATTGGTCACAAAAGCGCCAATGCATGGTGTCTCTACTAGATAACTTATAACTCCTTATAGTTAACATCTTACCTTTTATAGATTTCAAGAAGGAGCTGAGGTCACTTAATGGAGAATTGCAACTACACATTTTGGAGCTTGCTGATATTCTTATTGAGAGACCATCACAATATGCAAGGAGAGTCGAAGAAATTTCAACTGTGTTCAAAAATTTGCATCACCTTTTGAATTCACTGCGTCCTCATCAGGTATACAATGTTCCAGACAGCTATAAGTATATAAACTTGCCTTTGATTTGGATGCTTCTGGTCTTTTTCCCGTTTCTGAAATTTTCGCTGTATCATATATTTACTTTATAGGCAAGAGCAACTTTGATTCACATTTTGGAACTTCAGATAGAGCGCCGTAAACAAGCTGTGGAGGACATAAATAGGTCTGCAATACTTTTCCTGATTTTGTTTTTTAGTTTCATTGGCTATGGTTTCAGAACCTTCTACAAATTTGTTGGTATGCTTTTAAGTTGTAACCTTCATGGGTTTCTAAATCCACAAACAAGTTAGTTCATTCTTTTGAAAATGGTGAAAGTTAACACAAGAGACTCTAATTTCTTCACACTGGGTAAAACCAGTAAACAACCTTAACTGATTCAGGGAATTCATATTTATTGATCTCCCAAAATAGAAATACAAGAGAAGATAAAATAACTAACACCAACAACCTTAACTGACTCACCAGATACAACAACTAACTAGCACAAGCCTATCCTAATTCTTATTTCTACATGTCTTCCTTTAGTAAACTCTTGGAACATTTTCATTAGGACTAGTTACATCCTGCCTAATAGCTAGAACATAAGTTACTGATATAGAATACAGTTCATTATAAAGTCTAAGTTTGCTATTCATATTTTAATTATGGAAGGCTTCCTTTATATAGATTGTATTTTTTTGATAACATATGCAAAACCCGACGAATCTAAGGCTTGGTCCTCCCTCATAGGTTCATACACCCATGGCTACTTACCAGGGTTTTGTTTTATTGAAAGAGTTGATTATAACTCTCTGGAATCTAGAGTTATATGCTCAAATAAAATTTTATTTGCTACAGTCACTTTCCCATTTTAAACTGCGGATGGAAGATTATAAACTGCAAGAATTTTTTATAATGTAGTTAAAATTGATAGTGGAAACATCATCTGCCAATCCTGTTACCAAACTTTTTCTAATGAAATACAGTCATTTTACTTTGACAACCAGAAATCATAGCATCAAACATTTTCCTTTTCCATAACTTGAAAGACGGTTCCTGGTGTATCTTTGTACATTTTGTTTGCTGTATACAAATAAAATGACTCTAATAGTGCTTTGGAAACTTGATTGGTCTAATTTATGAGGTTGTATAGTTAGTTCACCAAAATTGATAGGAGCAACCATTTCTCCCTTCTTTGCCCAGTTTTGTCATGGCCAAAGACAATGCTTCTCTTTTATATTATAATAATTGTTTTATGATACGTATGGTACTTTTTGTTAAGCTATTGTGACTTGTCTTTTTGAACCTACTTTCTCTTCTCTTTTCAGGAGGAGAGAAGAAGCTCGAAGAATCCTTAACGAGTCATTGGCAACACTTGATGGCCATTAA
Protein sequence

>MS.gene028697.t1

MATATYPPPPPYYRLYKDYVQDPESAPEPPPPIEGTYICFGGSYTTSDVLPSLEEQGVRQLYSKGPTIDFKKELRSLNGELQLHILELADILIERPSQYARRVEEISTVFKNLHHLLNSLRPHQARATLIHILELQIERRKQAVEDINRRREEARRILNESLATLDGH