AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene028738

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene028738.t1 MTR_2g093960 92.774 429 16 2 1 429 1 414 0.0 816
MS.gene028738.t1 MTR_4g059870 51.707 410 144 14 1 382 1 384 6.59e-126 374
MS.gene028738.t1 MTR_8g017210 73.469 196 36 3 15 204 39 224 6.89e-100 308
MS.gene028738.t1 MTR_1g112270 77.326 172 36 2 35 204 47 217 2.43e-98 306
MS.gene028738.t1 MTR_1g016010 67.317 205 50 2 10 214 27 214 1.21e-97 300
MS.gene028738.t1 MTR_2g099990 77.143 175 30 2 31 205 45 209 1.35e-97 300
MS.gene028738.t1 MTR_1g094115 76.163 172 31 2 32 203 47 208 1.50e-94 295
MS.gene028738.t1 MTR_1g112270 75.882 170 31 2 35 204 47 206 2.91e-93 292
MS.gene028738.t1 MTR_2g090745 74.556 169 38 2 52 220 18 181 1.30e-89 278
MS.gene028738.t1 MTR_2g099990 85.000 140 20 1 65 204 1 139 6.55e-87 270
MS.gene028738.t1 MTR_1g094115 68.023 172 28 2 32 203 47 191 1.39e-80 258
MS.gene028738.t1 MTR_2g017720 75.652 115 22 2 52 166 324 432 1.63e-51 179
MS.gene028738.t1 MTR_3g102000 76.471 85 16 2 79 163 51 131 7.04e-36 132
MS.gene028738.t1 MTR_1g093095 35.211 142 80 4 64 194 109 249 3.53e-19 87.8
MS.gene028738.t1 MTR_5g030560 75.000 44 11 0 52 95 17 60 6.17e-19 81.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene028738.t1 AT3G45260 77.487 191 34 1 31 221 38 219 5.56e-106 321
MS.gene028738.t1 AT3G45260 77.487 191 34 1 31 221 38 219 5.56e-106 321
MS.gene028738.t1 AT5G03150 68.981 216 45 5 28 234 49 251 5.04e-102 313
MS.gene028738.t1 AT3G13810 78.771 179 29 1 26 204 45 214 3.40e-100 308
MS.gene028738.t1 AT3G13810 78.771 179 29 1 26 204 64 233 3.45e-100 308
MS.gene028738.t1 AT3G13810 78.771 179 29 1 26 204 64 233 3.45e-100 308
MS.gene028738.t1 AT3G13810 78.771 179 29 1 26 204 59 228 4.32e-100 308
MS.gene028738.t1 AT3G50700 73.134 201 36 5 4 204 14 196 7.13e-100 305
MS.gene028738.t1 AT3G13810 87.742 155 19 0 50 204 66 220 8.88e-99 304
MS.gene028738.t1 AT3G13810 87.742 155 19 0 50 204 80 234 1.19e-98 304
MS.gene028738.t1 AT1G55110 69.154 201 53 1 29 229 60 251 3.19e-98 301
MS.gene028738.t1 AT1G55110 69.154 201 53 1 29 229 60 251 3.19e-98 301
MS.gene028738.t1 AT1G55110 69.154 201 53 1 29 229 60 251 3.19e-98 301
MS.gene028738.t1 AT5G60470 63.927 219 60 3 16 224 27 236 7.55e-98 300
MS.gene028738.t1 AT5G60470 63.927 219 60 3 16 224 23 232 7.56e-98 300
MS.gene028738.t1 AT5G66730 78.613 173 27 2 32 204 32 194 8.33e-98 302
MS.gene028738.t1 AT1G03840 70.312 192 44 3 31 219 40 221 3.95e-96 298
MS.gene028738.t1 AT4G02670 74.576 177 36 1 32 208 55 222 4.67e-96 294
MS.gene028738.t1 AT4G02670 74.576 177 36 1 32 208 53 220 5.16e-96 294
MS.gene028738.t1 AT5G60470 70.492 183 45 1 51 224 45 227 1.74e-95 294
MS.gene028738.t1 AT1G03840 69.792 192 43 3 31 219 40 219 5.04e-95 295
MS.gene028738.t1 AT1G14580 73.446 177 37 2 32 208 53 219 1.02e-94 293
MS.gene028738.t1 AT1G14580 73.446 177 37 2 32 208 53 219 1.02e-94 293
MS.gene028738.t1 AT1G14580 73.446 177 37 2 32 208 67 233 1.69e-94 293
MS.gene028738.t1 AT5G44160 63.964 222 52 5 31 252 36 229 3.41e-94 291
MS.gene028738.t1 AT2G02080 69.189 185 47 2 24 208 46 220 1.36e-93 291
MS.gene028738.t1 AT2G02080 69.189 185 47 2 24 208 46 220 1.36e-93 291
MS.gene028738.t1 AT2G02080 69.189 185 47 2 24 208 46 220 1.36e-93 291
MS.gene028738.t1 AT2G02080 69.189 185 47 2 24 208 46 220 1.36e-93 291
MS.gene028738.t1 AT2G02070 76.301 173 31 2 32 204 52 214 8.25e-93 292
MS.gene028738.t1 AT2G02070 76.301 173 31 2 32 204 52 214 8.25e-93 292
MS.gene028738.t1 AT5G44160 60.515 233 74 5 44 270 1 221 3.96e-91 282
MS.gene028738.t1 AT2G02080 78.571 140 29 1 65 204 1 139 8.84e-83 261
MS.gene028738.t1 AT2G02080 78.571 140 29 1 65 204 1 139 8.84e-83 261
MS.gene028738.t1 AT1G25250 53.476 187 65 4 22 195 12 189 3.15e-66 216
MS.gene028738.t1 AT2G01940 45.455 220 91 3 27 226 39 249 6.06e-65 215
MS.gene028738.t1 AT1G68130 54.651 172 68 2 25 195 34 196 8.71e-65 214
MS.gene028738.t1 AT1G25250 60.274 146 56 2 52 195 21 166 1.03e-63 209
MS.gene028738.t1 AT2G01940 44.796 221 92 4 27 226 39 250 1.82e-61 206
MS.gene028738.t1 AT1G68130 60.000 110 43 1 87 195 1 110 7.55e-43 154
MS.gene028738.t1 AT1G25250 60.360 111 42 2 87 195 1 111 1.29e-42 152
MS.gene028738.t1 AT2G01940 44.375 160 69 2 87 226 1 160 1.52e-41 150
MS.gene028738.t1 AT1G34370 35.948 153 85 4 55 194 19 171 1.87e-23 100
MS.gene028738.t1 AT1G34370 35.948 153 85 4 55 194 229 381 5.62e-23 101
MS.gene028738.t1 AT1G34370 35.948 153 85 4 55 194 229 381 5.62e-23 101
MS.gene028738.t1 AT5G22890 31.953 169 93 4 55 210 202 361 1.83e-21 95.9
MS.gene028738.t1 AT1G13290 36.879 141 78 5 64 194 95 234 2.49e-19 88.6
MS.gene028738.t1 AT1G51220 31.765 170 98 5 57 218 165 324 5.10e-19 88.2
MS.gene028738.t1 AT1G08290 36.765 136 74 5 69 194 179 312 2.21e-18 86.3
MS.gene028738.t1 AT3G20880 33.562 146 88 4 57 194 243 387 2.27e-18 87.0
MS.gene028738.t1 AT3G57670 34.247 146 87 4 57 194 204 348 7.20e-18 85.5
MS.gene028738.t1 AT1G34790 35.616 146 85 4 57 194 132 276 1.93e-17 83.2

Find 92 sgRNAs with CRISPR-Local

Find 118 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATATTCCTCATGGTTTATT+TGG 0.044366 2.1:-9112562 MS.gene028738:CDS
CTCTTAACTGAATTTGAATT+AGG 0.133306 2.1:+9113954 None:intergenic
GACTTGGACATCCTTGTAAT+TGG 0.246061 2.1:+9112245 None:intergenic
ATGATGAGGAATGTTATTAT+TGG 0.266493 2.1:+9112486 None:intergenic
TTTGGGCTTAATCTGGAATA+TGG 0.266635 2.1:-9112544 MS.gene028738:CDS
GATGAGAATGCACTAGAATT+TGG 0.273568 2.1:+9112454 None:intergenic
TCTTAACTGAATTTGAATTA+GGG 0.289041 2.1:+9113955 None:intergenic
TGGTTTATTTGGGCTTAATC+TGG 0.289612 2.1:-9112551 MS.gene028738:CDS
CAAAAGATTGTTTCCAAAGT+TGG 0.290116 2.1:+9112606 None:intergenic
AAGATTAGGGTTTGAGTTTG+AGG 0.302868 2.1:+9113983 None:intergenic
AACAACTTGCCTGGTGTTCC+TGG 0.316889 2.1:+9113918 None:intergenic
AAACCATGAGGAATATTTCT+TGG 0.325294 2.1:+9112568 None:intergenic
GAATTAGGGTTAGGAAGATT+AGG 0.332160 2.1:+9113969 None:intergenic
GTCGATGTAGCTGTAGGTTT+TGG 0.340159 2.1:+9113683 None:intergenic
ATATTCCTCATGGTTTATTT+GGG 0.341816 2.1:-9112561 MS.gene028738:CDS
TGATGAGGAATGTTATTATT+GGG 0.351177 2.1:+9112487 None:intergenic
TTAGACTTAGTCCACACTTT+TGG 0.355942 2.1:-9112412 MS.gene028738:CDS
AGAGCAATCACTTCTGAATC+TGG 0.369008 2.1:+9113775 None:intergenic
AGAGCTTTAGGAGACCTAAC+AGG 0.369422 2.1:-9113553 MS.gene028738:CDS
GAAACAAGCTGGAGGTGATT+AGG 0.369571 2.1:-9113627 MS.gene028738:CDS
AATTAGGGTTAGGAAGATTA+GGG 0.370819 2.1:+9113970 None:intergenic
CATGACCCTAGTAGAGCTTT+AGG 0.371731 2.1:-9113565 MS.gene028738:CDS
CCCATGAATGTTTCTTGACC+TGG 0.371869 2.1:+9112517 None:intergenic
TTTGTTGTCATCAGTGATTT+TGG 0.378804 2.1:+9113748 None:intergenic
TGGTGCACGCAGCTCTTCTC+TGG 0.394181 2.1:+9113586 None:intergenic
CACAGAAGGCTCTGTGAGTT+AGG 0.397082 2.1:+9112680 None:intergenic
ACTGAATTTGAATTAGGGTT+AGG 0.405640 2.1:+9113960 None:intergenic
CAGAGCCTTCTGTGAATCCT+TGG 0.414644 2.1:-9112671 MS.gene028738:CDS
TCTAGTGCATTCTCATCAAC+AGG 0.433625 2.1:-9112448 MS.gene028738:CDS
AATATGCAGTTCAATCTGAT+TGG 0.433651 2.1:-9113465 MS.gene028738:CDS
TTTCTTTGCTTAAGCTTCCA+TGG 0.433993 2.1:+9113646 None:intergenic
ACGAACTTGCAAAGTGAGTT+TGG 0.438218 2.1:-9111989 MS.gene028738:CDS
TGCAAACTTCGCACATGAAA+CGG 0.446537 2.1:+9113725 None:intergenic
ACGAGAGATTTCCTTGGTGT+TGG 0.446714 2.1:-9112082 MS.gene028738:CDS
CCAGCAGTTATATCCAACTT+TGG 0.449389 2.1:-9112619 MS.gene028738:CDS
AAGTTCGTGACAGATTCTAT+TGG 0.449453 2.1:+9112004 None:intergenic
AGGTCTCCTAAAGCTCTACT+AGG 0.450218 2.1:+9113559 None:intergenic
CCAAAGTTGGATATAACTGC+TGG 0.453656 2.1:+9112619 None:intergenic
ATCAATGGTAATAATGATGC+TGG 0.454395 2.1:-9112187 MS.gene028738:CDS
GAAACATCATTTACAAGTAG+TGG 0.476541 2.1:-9112337 MS.gene028738:CDS
AAACATCATTTACAAGTAGT+GGG 0.483248 2.1:-9112336 MS.gene028738:CDS
AAAGATGATGTCTGAAGAAG+CGG 0.506812 2.1:-9114033 None:intergenic
TAATTCATCCATTGTCCTTG+TGG 0.512587 2.1:+9112382 None:intergenic
CTTCATTGAAATTTCCTGCA+TGG 0.515978 2.1:+9112119 None:intergenic
GAAAGCACGGTGAGAAGAAG+TGG 0.517455 2.1:-9113510 MS.gene028738:CDS
ACCAGGTCAAGAAACATTCA+TGG 0.517527 2.1:-9112518 MS.gene028738:CDS
ACAACTACAAAGCTTATCAA+TGG 0.529480 2.1:-9112202 MS.gene028738:CDS
TGCATTGTTGACACGTGACT+TGG 0.529889 2.1:+9112229 None:intergenic
AAGGCTCATAGTAAGATTTG+TGG 0.535441 2.1:-9113442 MS.gene028738:CDS
GTGGAAGGAAGTGCAAGAAT+AGG 0.537491 2.1:-9112649 MS.gene028738:CDS
TATTCTCAGAACCAATTACA+AGG 0.538162 2.1:-9112256 MS.gene028738:CDS
GCTGGAGGTGATTAGGAAGA+AGG 0.538892 2.1:-9113620 MS.gene028738:CDS
ATGTGCGAAGTTTGCAACAA+GGG 0.539035 2.1:-9113718 MS.gene028738:CDS
TGCAGTTCAATCTGATTGGA+AGG 0.545468 2.1:-9113461 MS.gene028738:CDS
GCTTAAGCAAAGAAACAAGC+TGG 0.547884 2.1:-9113638 MS.gene028738:CDS
GTTTGAGGTGCCTCTGAAGT+TGG 0.548806 2.1:+9113998 None:intergenic
TTCAACCAATGTAACCATGC+AGG 0.550853 2.1:-9112133 MS.gene028738:CDS
ATATTTACATAGACAAAAGA+AGG 0.552400 2.1:+9113893 None:intergenic
GCACCAAGAAATATTCCTCA+TGG 0.553675 2.1:-9112571 MS.gene028738:CDS
GTTTATTACCACAAGGACAA+TGG 0.558273 2.1:-9112390 MS.gene028738:CDS
AAGAAGGTGAACAACTTGCC+TGG 0.558756 2.1:+9113909 None:intergenic
CTAAAGCTCTACTAGGGTCA+TGG 0.559412 2.1:+9113566 None:intergenic
TTCTGTGAATCCTTGGTGGA+AGG 0.562391 2.1:-9112664 MS.gene028738:CDS
GACGAGGACACAATCTTCCA+TGG 0.563267 2.1:-9113663 MS.gene028738:CDS
ATTGTGGCACACTATTCTCC+AGG 0.563269 2.1:-9113399 MS.gene028738:intron
AGCCTTCTGTGAATCCTTGG+TGG 0.572662 2.1:-9112668 MS.gene028738:CDS
TCTGATACTTCCAACTTCAG+AGG 0.574676 2.1:-9114008 MS.gene028738:CDS
AGAAGTCTACCAGGAACACC+AGG 0.578443 2.1:-9113927 MS.gene028738:CDS
CATGTGCGAAGTTTGCAACA+AGG 0.579589 2.1:-9113719 MS.gene028738:CDS
AGTTTAACGAGAGATTTCCT+TGG 0.583180 2.1:-9112088 MS.gene028738:CDS
AATTTCCTGCATGGTTACAT+TGG 0.586685 2.1:+9112128 None:intergenic
AATCTGGAATATGGTGGACC+AGG 0.589300 2.1:-9112535 MS.gene028738:CDS
TTCCACCAAGGATTCACAGA+AGG 0.597334 2.1:+9112666 None:intergenic
GATTCTATTGGATTGAACCT+AGG 0.597877 2.1:+9112016 None:intergenic
GTCCTCGTCGATGTAGCTGT+AGG 0.600070 2.1:+9113677 None:intergenic
GGGCTTAATCTGGAATATGG+TGG 0.604589 2.1:-9112541 MS.gene028738:CDS
TATCATCTCTTGTTGCAACA+AGG 0.605854 2.1:+9112039 None:intergenic
TTTGGAAGATAACTATGATG+AGG 0.609010 2.1:+9112472 None:intergenic
AACTTGCAAAGTGAGTTTGG+TGG 0.611112 2.1:-9111986 MS.gene028738:CDS
GGTCTCCTAAAGCTCTACTA+GGG 0.614831 2.1:+9113560 None:intergenic
GAGCTTTAGGAGACCTAACA+GGG 0.617009 2.1:-9113552 MS.gene028738:CDS
AAAGAGTACAGATGTGATTG+TGG 0.617310 2.1:-9113415 MS.gene028738:CDS
CCAGGTCAAGAAACATTCAT+GGG 0.622229 2.1:-9112517 MS.gene028738:CDS
AAGCACTTTAGTAGAAAGCA+CGG 0.627488 2.1:-9113523 MS.gene028738:CDS
GTGGTAATAAACCAAAAGTG+TGG 0.631454 2.1:+9112401 None:intergenic
AACATCATTTACAAGTAGTG+GGG 0.641231 2.1:-9112335 MS.gene028738:CDS
TCTTGCACTTCCTTCCACCA+AGG 0.653269 2.1:+9112654 None:intergenic
TGCAACAAGAGATGATACCT+AGG 0.687869 2.1:-9112033 MS.gene028738:CDS
ATGAGTCATCTCCAACACCA+AGG 0.689337 2.1:+9112071 None:intergenic
TTAAGCCCAAATAAACCATG+AGG 0.695340 2.1:+9112556 None:intergenic
TAAGCAAAGAAACAAGCTGG+AGG 0.718484 2.1:-9113635 MS.gene028738:CDS
AACCTACAGCTACATCGACG+AGG 0.721645 2.1:-9113679 MS.gene028738:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTATTTGTTAATTAAGA+AGG + chr2.1:9112196-9112215 None:intergenic 10.0%
!! ACAAAAAATAATTAACAAAG+TGG + chr2.1:9113274-9113293 None:intergenic 15.0%
!!! AATTTAATCACAGATTTTTT+CGG - chr2.1:9113071-9113090 MS.gene028738:intron 15.0%
!! ATATTAAACATCCGTATATT+TGG - chr2.1:9112766-9112785 MS.gene028738:intron 20.0%
!! ATATTTACATAGACAAAAGA+AGG + chr2.1:9112115-9112134 None:intergenic 20.0%
!! TCTTAACTGAATTTGAATTA+GGG + chr2.1:9112053-9112072 None:intergenic 20.0%
!!! AATAATTTTGAGAGTATGAT+AGG - chr2.1:9113247-9113266 MS.gene028738:intron 20.0%
!!! TAAAGTTTGTTATGAATTCA+CGG - chr2.1:9112672-9112691 MS.gene028738:CDS 20.0%
!!! TGTTGTTATTTCCAAATATA+CGG + chr2.1:9112780-9112799 None:intergenic 20.0%
! AAACATCATTTACAAGTAGT+GGG - chr2.1:9113669-9113688 MS.gene028738:CDS 25.0%
! AATATTCCTCATGGTTTATT+TGG - chr2.1:9113443-9113462 MS.gene028738:CDS 25.0%
! ATATTCCTCATGGTTTATTT+GGG - chr2.1:9113444-9113463 MS.gene028738:CDS 25.0%
! ATGATGAGGAATGTTATTAT+TGG + chr2.1:9113522-9113541 None:intergenic 25.0%
! CTCTTAACTGAATTTGAATT+AGG + chr2.1:9112054-9112073 None:intergenic 25.0%
! TGATGAGGAATGTTATTATT+GGG + chr2.1:9113521-9113540 None:intergenic 25.0%
!! TAGCTTTTACAGAATCAAAA+TGG + chr2.1:9112702-9112721 None:intergenic 25.0%
AAACCATGAGGAATATTTCT+TGG + chr2.1:9113440-9113459 None:intergenic 30.0%
AACATCATTTACAAGTAGTG+GGG - chr2.1:9113670-9113689 MS.gene028738:CDS 30.0%
AATATGCAGTTCAATCTGAT+TGG - chr2.1:9112540-9112559 MS.gene028738:CDS 30.0%
AATTAGGGTTAGGAAGATTA+GGG + chr2.1:9112038-9112057 None:intergenic 30.0%
ACAACTACAAAGCTTATCAA+TGG - chr2.1:9113803-9113822 MS.gene028738:intron 30.0%
ACTGAATTTGAATTAGGGTT+AGG + chr2.1:9112048-9112067 None:intergenic 30.0%
ATCAATGGTAATAATGATGC+TGG - chr2.1:9113818-9113837 MS.gene028738:intron 30.0%
CAAAAGATTGTTTCCAAAGT+TGG + chr2.1:9113402-9113421 None:intergenic 30.0%
CTCATTCCAATTAATGAAGT+GGG - chr2.1:9112993-9113012 MS.gene028738:intron 30.0%
GAAACATCATTTACAAGTAG+TGG - chr2.1:9113668-9113687 MS.gene028738:CDS 30.0%
GAGTTTACTATACAGAATCA+CGG + chr2.1:9113210-9113229 None:intergenic 30.0%
GATCTAAACATGCATTTAAG+AGG - chr2.1:9112847-9112866 MS.gene028738:intron 30.0%
TAAGCATGAGATTAATGCAA+AGG + chr2.1:9113048-9113067 None:intergenic 30.0%
TATTCTCAGAACCAATTACA+AGG - chr2.1:9113749-9113768 MS.gene028738:CDS 30.0%
TCTAATCCCACTTCATTAAT+TGG + chr2.1:9113002-9113021 None:intergenic 30.0%
TCTACTACACGATTTAATCA+GGG - chr2.1:9112870-9112889 MS.gene028738:intron 30.0%
TCTCATTCCAATTAATGAAG+TGG - chr2.1:9112992-9113011 MS.gene028738:intron 30.0%
TGTATGATGATTGACAAATC+AGG - chr2.1:9113291-9113310 MS.gene028738:intron 30.0%
TTGTAACTTCGACAAAATCA+GGG - chr2.1:9112728-9112747 MS.gene028738:intron 30.0%
TTTGGAAGATAACTATGATG+AGG + chr2.1:9113536-9113555 None:intergenic 30.0%
TTTGTAACTTCGACAAAATC+AGG - chr2.1:9112727-9112746 MS.gene028738:intron 30.0%
!! TTTGTTGTCATCAGTGATTT+TGG + chr2.1:9112260-9112279 None:intergenic 30.0%
!!! ACTTTTGGTTTATTACCACA+AGG - chr2.1:9113608-9113627 MS.gene028738:CDS 30.0%
AAGAGAAAAAGAAGTCTACC+AGG - chr2.1:9112069-9112088 MS.gene028738:CDS 35.0%
AAGCACTTTAGTAGAAAGCA+CGG - chr2.1:9112482-9112501 MS.gene028738:CDS 35.0%
AAGGCTCATAGTAAGATTTG+TGG - chr2.1:9112563-9112582 MS.gene028738:CDS 35.0%
AAGTTCGTGACAGATTCTAT+TGG + chr2.1:9114004-9114023 None:intergenic 35.0%
AATTTCCTGCATGGTTACAT+TGG + chr2.1:9113880-9113899 None:intergenic 35.0%
AGTTTAACGAGAGATTTCCT+TGG - chr2.1:9113917-9113936 MS.gene028738:CDS 35.0%
CGGATGTTTAATATAACCGT+CGG + chr2.1:9112760-9112779 None:intergenic 35.0%
CTTCATTGAAATTTCCTGCA+TGG + chr2.1:9113889-9113908 None:intergenic 35.0%
GAATTAGGGTTAGGAAGATT+AGG + chr2.1:9112039-9112058 None:intergenic 35.0%
GATCTAAACATGCACTTAAG+AGG - chr2.1:9112911-9112930 MS.gene028738:intron 35.0%
GATGAGAATGCACTAGAATT+TGG + chr2.1:9113554-9113573 None:intergenic 35.0%
GATTCTATTGGATTGAACCT+AGG + chr2.1:9113992-9114011 None:intergenic 35.0%
GTCTACTACACGATTTAATC+AGG - chr2.1:9112869-9112888 MS.gene028738:intron 35.0%
GTGGTAATAAACCAAAAGTG+TGG + chr2.1:9113607-9113626 None:intergenic 35.0%
GTTTATTACCACAAGGACAA+TGG - chr2.1:9113615-9113634 MS.gene028738:CDS 35.0%
TAATTCATCCATTGTCCTTG+TGG + chr2.1:9113626-9113645 None:intergenic 35.0%
TATCATCTCTTGTTGCAACA+AGG + chr2.1:9113969-9113988 None:intergenic 35.0%
TGGTTTATTTGGGCTTAATC+TGG - chr2.1:9113454-9113473 MS.gene028738:CDS 35.0%
TTAAGCCCAAATAAACCATG+AGG + chr2.1:9113452-9113471 None:intergenic 35.0%
TTTCTTTGCTTAAGCTTCCA+TGG + chr2.1:9112362-9112381 None:intergenic 35.0%
! AAAGAGTACAGATGTGATTG+TGG - chr2.1:9112590-9112609 MS.gene028738:CDS 35.0%
! AAGATTAGGGTTTGAGTTTG+AGG + chr2.1:9112025-9112044 None:intergenic 35.0%
! TTAGACTTAGTCCACACTTT+TGG - chr2.1:9113593-9113612 MS.gene028738:CDS 35.0%
! TTTGGGCTTAATCTGGAATA+TGG - chr2.1:9113461-9113480 MS.gene028738:CDS 35.0%
!!! AGTGCTTTTTTATCCCTGTT+AGG + chr2.1:9112469-9112488 None:intergenic 35.0%
AACTTGCAAAGTGAGTTTGG+TGG - chr2.1:9114019-9114038 MS.gene028738:CDS 40.0%
ACCAGGTCAAGAAACATTCA+TGG - chr2.1:9113487-9113506 MS.gene028738:CDS 40.0%
ACGAACTTGCAAAGTGAGTT+TGG - chr2.1:9114016-9114035 MS.gene028738:CDS 40.0%
AGAGCAATCACTTCTGAATC+TGG + chr2.1:9112233-9112252 None:intergenic 40.0%
ATGTGCGAAGTTTGCAACAA+GGG - chr2.1:9112287-9112306 MS.gene028738:CDS 40.0%
CCAAAGTTGGATATAACTGC+TGG + chr2.1:9113389-9113408 None:intergenic 40.0%
CCAGCAGTTATATCCAACTT+TGG - chr2.1:9113386-9113405 MS.gene028738:intron 40.0%
CCAGGTCAAGAAACATTCAT+GGG - chr2.1:9113488-9113507 MS.gene028738:CDS 40.0%
GACTTGGACATCCTTGTAAT+TGG + chr2.1:9113763-9113782 None:intergenic 40.0%
GCACCAAGAAATATTCCTCA+TGG - chr2.1:9113434-9113453 MS.gene028738:CDS 40.0%
GCTTAAGCAAAGAAACAAGC+TGG - chr2.1:9112367-9112386 MS.gene028738:CDS 40.0%
TAAGCAAAGAAACAAGCTGG+AGG - chr2.1:9112370-9112389 MS.gene028738:CDS 40.0%
TCTAGTGCATTCTCATCAAC+AGG - chr2.1:9113557-9113576 MS.gene028738:CDS 40.0%
TCTGATACTTCCAACTTCAG+AGG - chr2.1:9111997-9112016 MS.gene028738:CDS 40.0%
TGCAAACTTCGCACATGAAA+CGG + chr2.1:9112283-9112302 None:intergenic 40.0%
TGCAACAAGAGATGATACCT+AGG - chr2.1:9113972-9113991 MS.gene028738:CDS 40.0%
TGCAGTTCAATCTGATTGGA+AGG - chr2.1:9112544-9112563 MS.gene028738:CDS 40.0%
TTCAACCAATGTAACCATGC+AGG - chr2.1:9113872-9113891 MS.gene028738:intron 40.0%
AAGAAGGTGAACAACTTGCC+TGG + chr2.1:9112099-9112118 None:intergenic 45.0%
AGGTCTCCTAAAGCTCTACT+AGG + chr2.1:9112449-9112468 None:intergenic 45.0%
ATGAGTCATCTCCAACACCA+AGG + chr2.1:9113937-9113956 None:intergenic 45.0%
ATTGTGGCACACTATTCTCC+AGG - chr2.1:9112606-9112625 MS.gene028738:CDS 45.0%
CATGACCCTAGTAGAGCTTT+AGG - chr2.1:9112440-9112459 MS.gene028738:CDS 45.0%
CATGTGCGAAGTTTGCAACA+AGG - chr2.1:9112286-9112305 MS.gene028738:CDS 45.0%
CCCATGAATGTTTCTTGACC+TGG + chr2.1:9113491-9113510 None:intergenic 45.0%
CTAAAGCTCTACTAGGGTCA+TGG + chr2.1:9112442-9112461 None:intergenic 45.0%
GAAACAAGCTGGAGGTGATT+AGG - chr2.1:9112378-9112397 MS.gene028738:CDS 45.0%
GGTCTCCTAAAGCTCTACTA+GGG + chr2.1:9112448-9112467 None:intergenic 45.0%
GTGCATCATGCTTGTATACC+TGG + chr2.1:9112627-9112646 None:intergenic 45.0%
TGCATTGTTGACACGTGACT+TGG + chr2.1:9113779-9113798 None:intergenic 45.0%
TTCCACCAAGGATTCACAGA+AGG + chr2.1:9113342-9113361 None:intergenic 45.0%
TTCTGTGAATCCTTGGTGGA+AGG - chr2.1:9113341-9113360 MS.gene028738:intron 45.0%
! AAAATCAGGGTGTCAACCGA+CGG - chr2.1:9112741-9112760 MS.gene028738:intron 45.0%
! ACGAGAGATTTCCTTGGTGT+TGG - chr2.1:9113923-9113942 MS.gene028738:CDS 45.0%
! GGGCTTAATCTGGAATATGG+TGG - chr2.1:9113464-9113483 MS.gene028738:CDS 45.0%
! GTCGATGTAGCTGTAGGTTT+TGG + chr2.1:9112325-9112344 None:intergenic 45.0%
! GTGGAAGGAAGTGCAAGAAT+AGG - chr2.1:9113356-9113375 MS.gene028738:intron 45.0%
!! AATCTGGAATATGGTGGACC+AGG - chr2.1:9113470-9113489 MS.gene028738:CDS 45.0%
!! AGAGCTTTAGGAGACCTAAC+AGG - chr2.1:9112452-9112471 MS.gene028738:CDS 45.0%
!! GAGCTTTAGGAGACCTAACA+GGG - chr2.1:9112453-9112472 MS.gene028738:CDS 45.0%
AACAACTTGCCTGGTGTTCC+TGG + chr2.1:9112090-9112109 None:intergenic 50.0%
AACCTACAGCTACATCGACG+AGG - chr2.1:9112326-9112345 MS.gene028738:CDS 50.0%
AGAAGTCTACCAGGAACACC+AGG - chr2.1:9112078-9112097 MS.gene028738:CDS 50.0%
AGCCTTCTGTGAATCCTTGG+TGG - chr2.1:9113337-9113356 MS.gene028738:intron 50.0%
CACAGAAGGCTCTGTGAGTT+AGG + chr2.1:9113328-9113347 None:intergenic 50.0%
CAGAGCCTTCTGTGAATCCT+TGG - chr2.1:9113334-9113353 MS.gene028738:intron 50.0%
CTGAATCTGGATCTGCAGCA+TGG + chr2.1:9112220-9112239 None:intergenic 50.0%
GACGAGGACACAATCTTCCA+TGG - chr2.1:9112342-9112361 MS.gene028738:CDS 50.0%
GCTGGAGGTGATTAGGAAGA+AGG - chr2.1:9112385-9112404 MS.gene028738:CDS 50.0%
TCTTGCACTTCCTTCCACCA+AGG + chr2.1:9113354-9113373 None:intergenic 50.0%
! GAAAGCACGGTGAGAAGAAG+TGG - chr2.1:9112495-9112514 MS.gene028738:CDS 50.0%
!! GTTTGAGGTGCCTCTGAAGT+TGG + chr2.1:9112010-9112029 None:intergenic 50.0%
GTCCTCGTCGATGTAGCTGT+AGG + chr2.1:9112331-9112350 None:intergenic 55.0%
TGGTGCACGCAGCTCTTCTC+TGG + chr2.1:9112422-9112441 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 9111976 9114051 9111976 ID=MS.gene028738
chr2.1 mRNA 9111976 9114051 9111976 ID=MS.gene028738.t1;Parent=MS.gene028738
chr2.1 exon 9113901 9114051 9113901 ID=MS.gene028738.t1.exon1;Parent=MS.gene028738.t1
chr2.1 CDS 9113901 9114051 9113901 ID=cds.MS.gene028738.t1;Parent=MS.gene028738.t1
chr2.1 exon 9113400 9113799 9113400 ID=MS.gene028738.t1.exon2;Parent=MS.gene028738.t1
chr2.1 CDS 9113400 9113799 9113400 ID=cds.MS.gene028738.t1;Parent=MS.gene028738.t1
chr2.1 exon 9111976 9112714 9111976 ID=MS.gene028738.t1.exon3;Parent=MS.gene028738.t1
chr2.1 CDS 9111976 9112714 9111976 ID=cds.MS.gene028738.t1;Parent=MS.gene028738.t1
Gene Sequence

>MS.gene028738

ATGATGTCTGAAGAAGCGGTTTCTGATACTTCCAACTTCAGAGGCACCTCAAACTCAAACCCTAATCTTCCTAACCCTAATTCAAATTCAGTTAAGAGAAAAAGAAGTCTACCAGGAACACCAGGCAAGTTGTTCACCTTCTTTTGTCTATGTAAATATTCTAAATATATTAGCATAGATTTTTAATATTAAATTTTGTGAAAAACATTGATGAATTCCTTCTTAATTAACAAATAAATAACCATGCTGCAGATCCAGATTCAGAAGTGATTGCTCTATCACCAAAATCACTGATGACAACAAACCGTTTCATGTGCGAAGTTTGCAACAAGGGTTTCAAGAGAGACCAAAACCTACAGCTACATCGACGAGGACACAATCTTCCATGGAAGCTTAAGCAAAGAAACAAGCTGGAGGTGATTAGGAAGAAGGTGTACGTGTGTCCAGAGAAGAGCTGCGTGCACCATGACCCTAGTAGAGCTTTAGGAGACCTAACAGGGATAAAAAAGCACTTTAGTAGAAAGCACGGTGAGAAGAAGTGGAAGTGTGATAAGTGTTCTAAGAAATATGCAGTTCAATCTGATTGGAAGGCTCATAGTAAGATTTGTGGCACTAAAGAGTACAGATGTGATTGTGGCACACTATTCTCCAGGTATACAAGCATGATGCACTATTTAGTGCTTGTTTGATATCACATAAAGTTTGTTATGAATTCACGGTGAGCCATTTTGATTCTGTAAAAGCTACACTTTTTGTAACTTCGACAAAATCAGGGTGTCAACCGACGGTTATATTAAACATCCGTATATTTGGAAATAACAACATTGAACAGTAACATATTGTTGATACTTTTGTAAAAAATATCATTGTCGATCTAAACATGCATTTAAGAGGTCTACTACACGATTTAATCAGGGTGTCAAATGATCATTGTCGATCTAAACATGCACTTAAGAGGTCTATTGTACGATAATTTTGCAATAATTTTACAATCTATATTTCATTCGATTTTTTTTTCTCATTCCAATTAATGAAGTGGGATTAGATTATATAACAGATTTAATTCTTGCCTTTGCATTAATCTCATGCTTAGTCAATTTAATCACAGATTTTTTCGGTATAAATAAATTGATATTCTGCACGCATCTAGTTGCATGTTTTGAATCAAGCTGAGTTCAATTTGTTGACGCGCAAAAATGCATTTATTTTCTTTCAAAATTATAGTGACACACCGTGATTCTGTATAGTAAACTCTTGCACTCTAGACATGTAATAATTTTGAGAGTATGATAGGACCACTTTGTTAATTATTTTTTGTATGATGATTGACAAATCAGGAAAGACAGCTTCCTAACTCACAGAGCCTTCTGTGAATCCTTGGTGGAAGGAAGTGCAAGAATAGGTTCAGTTCCAGCAGTTATATCCAACTTTGGAAACAATCTTTTGATAAACACTCAAGCACCAAGAAATATTCCTCATGGTTTATTTGGGCTTAATCTGGAATATGGTGGACCAGGTCAAGAAACATTCATGGGAAATTTTCCCAATAATAACATTCCTCATCATAGTTATCTTCCAAATTCTAGTGCATTCTCATCAACAGGAGCAAACTCTGATTTAGACTTAGTCCACACTTTTGGTTTATTACCACAAGGACAATGGATGAATTACAAATACAATGATCAACATGCAGAAACATCATTTACAAGTAGTGGGGTTCTAAAGCTAGAACAACAACAAGAAGAAGACAAAATGCATGATTTGTCTCATTTATATTCTCAGAACCAATTACAAGGATGTCCAAGTCACGTGTCAACAATGCAAACTACAACTACAAAGCTTATCAATGGTAATAATGATGCTGGTTTCAATAATATTGTTGAAGTTAAGAAATTGTTCAACCAATGTAACCATGCAGGAAATTTCAATGAAGATCAGTTGAGTTTAACGAGAGATTTCCTTGGTGTTGGAGATGACTCATTGAAGAGAACCTTGTTGCAACAAGAGATGATACCTAGGTTCAATCCAATAGAATCTGTCACGAACTTGCAAAGTGAGTTTGGTGGACACTATTGA
Protein sequence

>MS.gene028738.t1

MMSEEAVSDTSNFRGTSNSNPNLPNPNSNSVKRKRSLPGTPGKLFTFFCLYPDSEVIALSPKSLMTTNRFMCEVCNKGFKRDQNLQLHRRGHNLPWKLKQRNKLEVIRKKVYVCPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTKEYRCDCGTLFSRKDSFLTHRAFCESLVEGSARIGSVPAVISNFGNNLLINTQAPRNIPHGLFGLNLEYGGPGQETFMGNFPNNNIPHHSYLPNSSAFSSTGANSDLDLVHTFGLLPQGQWMNYKYNDQHAETSFTSSGVLKLEQQQEEDKMHDLSHLYSQNQLQGCPSHVSTMQTTTTKLINGNNDAGFNNIVEVKKLFNQCNHAGNFNEDQLSLTRDFLGVGDDSLKRTLLQQEMIPRFNPIESVTNLQSEFGGHY