AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene028739

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene028739.t1 MTR_2g093810 93.396 318 21 0 1 318 1 318 0.0 610
MS.gene028739.t1 MTR_7g100990 48.024 329 141 5 10 318 7 325 2.42e-94 283
MS.gene028739.t1 MTR_5g041940 67.059 170 54 1 14 183 3 170 9.34e-83 251
MS.gene028739.t1 MTR_4g081870 67.052 173 55 1 8 180 3 173 5.66e-82 249
MS.gene028739.t1 MTR_2g080010 48.810 252 84 6 14 258 15 228 1.08e-79 246
MS.gene028739.t1 MTR_7g085220 66.286 175 50 4 14 180 8 181 8.30e-79 244
MS.gene028739.t1 MTR_4g089135 63.842 177 45 2 14 171 15 191 1.75e-78 243
MS.gene028739.t1 MTR_2157s0010 66.460 161 48 2 14 168 8 168 3.48e-76 234
MS.gene028739.t1 MTR_3g088110 61.538 169 61 2 10 178 3 167 4.75e-72 224
MS.gene028739.t1 MTR_8g094580 54.595 185 74 2 14 191 7 188 3.05e-70 220
MS.gene028739.t1 MTR_2g079990 60.366 164 59 3 10 173 12 169 3.30e-67 214
MS.gene028739.t1 MTR_8g059170 60.345 174 60 4 10 183 10 174 1.04e-65 209
MS.gene028739.t1 MTR_3g096920 60.000 155 58 2 14 168 7 157 2.38e-64 205
MS.gene028739.t1 MTR_2g079990 52.660 188 63 3 10 173 12 197 8.99e-63 204
MS.gene028739.t1 MTR_5g040420 52.907 172 77 2 1 168 1 172 2.32e-60 197
MS.gene028739.t1 MTR_8g467490 52.601 173 77 2 1 168 1 173 3.71e-58 192
MS.gene028739.t1 MTR_3g096920 48.168 191 60 2 14 168 7 194 6.97e-58 189
MS.gene028739.t1 MTR_6g011860 50.562 178 82 2 16 188 17 193 1.83e-56 187
MS.gene028739.t1 MTR_3g109340 46.305 203 102 4 4 205 13 209 1.44e-53 179
MS.gene028739.t1 MTR_6g477900 49.405 168 77 3 14 179 6 167 2.33e-53 175
MS.gene028739.t1 MTR_2g064090 47.953 171 82 3 13 181 5 170 3.58e-53 178
MS.gene028739.t1 MTR_3g109340 46.305 203 101 4 4 205 13 208 3.66e-53 178
MS.gene028739.t1 MTR_2g078700 55.484 155 67 1 14 168 23 175 6.24e-53 178
MS.gene028739.t1 MTR_1g008740 46.635 208 89 5 1 204 15 204 9.50e-53 177
MS.gene028739.t1 MTR_6g084430 52.500 160 68 2 14 173 5 156 1.09e-52 176
MS.gene028739.t1 MTR_1g008740 46.635 208 89 5 1 204 1 190 1.14e-52 176
MS.gene028739.t1 MTR_6g012670 51.190 168 78 2 8 175 14 177 1.52e-52 175
MS.gene028739.t1 MTR_7g005280 54.605 152 60 2 14 165 15 157 1.63e-51 171
MS.gene028739.t1 MTR_4g108760 52.500 160 62 3 14 168 17 167 3.26e-51 173
MS.gene028739.t1 MTR_3g435150 51.515 165 76 3 9 173 11 171 1.06e-50 170
MS.gene028739.t1 MTR_4g134460 53.333 150 63 3 16 165 56 198 2.88e-50 172
MS.gene028739.t1 MTR_5g076850 53.416 161 61 4 13 168 5 156 4.90e-50 176
MS.gene028739.t1 MTR_2g062730 45.550 191 92 4 13 200 9 190 9.63e-50 169
MS.gene028739.t1 MTR_7g085260 49.112 169 82 3 7 173 10 176 2.54e-49 169
MS.gene028739.t1 MTR_1g069805 45.455 176 88 2 13 188 9 176 5.69e-49 165
MS.gene028739.t1 MTR_5g090970 48.571 175 84 3 16 184 20 194 8.34e-49 166
MS.gene028739.t1 MTR_4g036030 49.123 171 70 5 15 178 8 168 1.04e-48 166
MS.gene028739.t1 MTR_8g024480 47.929 169 78 3 15 175 16 182 4.08e-48 167
MS.gene028739.t1 MTR_3g064580 51.266 158 70 3 13 168 5 157 5.07e-48 171
MS.gene028739.t1 MTR_3g070030 51.316 152 71 2 14 165 19 167 1.06e-47 164
MS.gene028739.t1 MTR_8g099750 51.948 154 69 3 14 165 14 164 1.26e-47 160
MS.gene028739.t1 MTR_4g035590 50.000 164 70 3 8 168 2 156 2.93e-47 162
MS.gene028739.t1 MTR_8g076110 45.349 172 83 3 15 183 7 170 4.16e-47 161
MS.gene028739.t1 MTR_4g098630 45.810 179 88 4 13 187 5 178 4.56e-47 161
MS.gene028739.t1 MTR_4g075980 45.882 170 82 2 16 184 17 177 6.24e-47 160
MS.gene028739.t1 MTR_7g097090 49.020 153 70 2 13 165 9 153 9.20e-47 159
MS.gene028739.t1 MTR_6g032770 47.337 169 83 3 1 165 1 167 9.21e-47 162
MS.gene028739.t1 MTR_5g090970 47.429 175 85 4 16 184 20 193 2.00e-46 159
MS.gene028739.t1 MTR_3g116070 55.224 134 59 1 9 141 18 151 2.94e-46 160
MS.gene028739.t1 MTR_5g021710 49.045 157 69 3 15 168 9 157 3.03e-46 160
MS.gene028739.t1 MTR_1g096430 49.045 157 69 3 15 168 8 156 4.21e-46 159
MS.gene028739.t1 MTR_2g068880 48.125 160 73 4 16 165 24 183 5.59e-46 158
MS.gene028739.t1 MTR_8g094580 52.941 136 54 2 63 191 2 134 7.27e-46 155
MS.gene028739.t1 MTR_2g068920 45.833 168 81 4 16 173 23 190 9.29e-46 157
MS.gene028739.t1 MTR_4g101680 44.186 172 84 4 15 182 8 171 9.51e-46 159
MS.gene028739.t1 MTR_5g012080 48.428 159 69 4 15 168 8 158 2.32e-45 157
MS.gene028739.t1 MTR_2g064470 48.026 152 72 3 14 165 11 155 5.49e-45 155
MS.gene028739.t1 MTR_5g014300 47.273 165 69 4 13 168 5 160 7.51e-45 155
MS.gene028739.t1 MTR_7g011120 42.347 196 98 3 14 196 8 201 9.98e-44 152
MS.gene028739.t1 MTR_3g098810 49.123 171 74 5 14 173 14 182 2.27e-43 149
MS.gene028739.t1 MTR_7g011130 41.667 192 91 3 14 186 19 208 1.51e-42 150
MS.gene028739.t1 MTR_3g096140 45.806 155 76 4 16 168 9 157 7.70e-42 146
MS.gene028739.t1 MTR_1g097300 52.344 128 57 2 16 141 21 146 1.01e-41 152
MS.gene028739.t1 MTR_3g096140 45.806 155 76 4 16 168 9 157 3.47e-41 147
MS.gene028739.t1 MTR_2g086880 43.605 172 83 3 16 186 20 178 4.41e-41 150
MS.gene028739.t1 MTR_1g090720 46.875 160 79 3 13 168 41 198 6.12e-41 149
MS.gene028739.t1 MTR_2g086880 43.605 172 83 3 16 186 20 178 7.72e-41 150
MS.gene028739.t1 MTR_3g098810 53.285 137 60 2 14 148 14 148 3.28e-40 139
MS.gene028739.t1 MTR_5g069030 45.506 178 84 6 14 185 25 195 4.10e-40 148
MS.gene028739.t1 MTR_3g093050 45.810 179 84 6 13 185 21 192 4.80e-40 148
MS.gene028739.t1 MTR_3g093050 45.810 179 84 6 13 185 21 192 5.15e-40 148
MS.gene028739.t1 MTR_1g090723 45.223 157 75 5 16 168 10 159 6.48e-40 148
MS.gene028739.t1 MTR_1g090723 44.586 157 75 5 16 168 10 158 4.69e-39 145
MS.gene028739.t1 MTR_1g090723 44.586 157 75 5 16 168 10 158 5.56e-39 145
MS.gene028739.t1 MTR_8g063550 43.871 155 79 4 16 168 8 156 1.58e-38 139
MS.gene028739.t1 MTR_3g093040 41.622 185 89 5 10 185 104 278 1.79e-38 138
MS.gene028739.t1 MTR_8g063550 43.871 155 79 4 16 168 8 156 2.89e-38 140
MS.gene028739.t1 MTR_8g063550 43.871 155 79 4 16 168 8 156 3.08e-38 140
MS.gene028739.t1 MTR_3g070040 41.489 188 96 4 14 193 8 189 1.19e-37 137
MS.gene028739.t1 MTR_0036s0150 43.590 156 78 4 16 168 7 155 2.68e-37 140
MS.gene028739.t1 MTR_8g093580 42.581 155 81 4 16 168 8 156 8.02e-37 137
MS.gene028739.t1 MTR_4g052620 45.283 159 76 5 14 165 5 159 7.86e-36 130
MS.gene028739.t1 MTR_8g023840 44.937 158 74 5 11 165 8 155 7.87e-36 133
MS.gene028739.t1 MTR_7g105170 40.719 167 91 4 14 173 4 169 1.11e-34 127
MS.gene028739.t1 MTR_4g094302 37.580 157 88 2 14 168 11 159 2.15e-33 122
MS.gene028739.t1 MTR_4g094302 40.625 128 68 1 14 141 11 130 3.82e-32 117
MS.gene028739.t1 MTR_3g096140 42.958 142 73 4 29 168 1 136 3.91e-32 122
MS.gene028739.t1 MTR_2g086690 42.138 159 80 5 15 165 5 159 8.92e-32 119
MS.gene028739.t1 MTR_8g023860 42.857 154 75 5 15 165 13 156 1.10e-31 122
MS.gene028739.t1 MTR_8g023900 41.463 164 78 6 13 168 187 340 4.51e-31 122
MS.gene028739.t1 MTR_8g023900 38.372 172 86 6 14 178 12 170 7.09e-30 118
MS.gene028739.t1 MTR_8g023930 37.778 180 98 5 14 180 24 202 9.95e-31 120
MS.gene028739.t1 MTR_8g093790 37.654 162 75 5 7 168 3 138 4.07e-27 105
MS.gene028739.t1 MTR_7g070140 56.000 75 33 0 67 141 17 91 2.81e-23 93.6
MS.gene028739.t1 MTR_3g096400 35.976 164 81 8 14 165 7 158 1.77e-21 90.9
MS.gene028739.t1 MTR_8g023880 34.228 149 78 5 9 140 2 147 4.26e-20 88.6
MS.gene028739.t1 MTR_7g083330 29.221 154 101 5 8 157 12 161 8.69e-16 74.7
MS.gene028739.t1 MTR_7g083360 31.250 128 82 4 14 139 10 133 1.07e-15 73.6
MS.gene028739.t1 MTR_7g070150 45.763 59 25 1 113 171 9 60 4.20e-12 62.0
MS.gene028739.t1 MTR_1g045470 32.258 155 84 7 22 166 13 156 3.69e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene028739.t1 AT1G69490 66.471 170 55 1 10 179 5 172 4.15e-81 247
MS.gene028739.t1 AT1G61110 67.647 170 38 3 14 171 16 180 3.09e-79 244
MS.gene028739.t1 AT3G15510 61.404 171 59 1 18 181 21 191 2.98e-76 238
MS.gene028739.t1 AT1G77450 58.989 178 69 2 8 185 4 177 1.66e-73 227
MS.gene028739.t1 AT3G04070 55.340 206 76 5 13 206 9 210 1.79e-73 230
MS.gene028739.t1 AT3G04070 53.153 222 72 6 13 206 9 226 1.11e-72 229
MS.gene028739.t1 AT1G01720 66.452 155 49 1 14 168 7 158 6.65e-72 224
MS.gene028739.t1 AT5G08790 58.857 175 68 2 9 182 2 173 9.78e-70 218
MS.gene028739.t1 AT1G52880 69.427 157 42 3 18 168 21 177 7.18e-69 218
MS.gene028739.t1 AT5G63790 57.865 178 70 3 9 184 45 219 5.14e-68 215
MS.gene028739.t1 AT5G63790 57.865 178 70 3 9 184 55 229 6.67e-68 215
MS.gene028739.t1 AT4G27410 59.748 159 58 3 10 168 10 162 7.31e-67 211
MS.gene028739.t1 AT1G52890 59.524 168 62 3 1 168 1 162 1.18e-66 212
MS.gene028739.t1 AT3G15500 58.580 169 64 3 10 178 10 172 1.26e-66 212
MS.gene028739.t1 AT4G27410 53.977 176 58 4 10 168 10 179 1.87e-62 201
MS.gene028739.t1 AT1G26870 46.500 200 100 2 16 208 18 217 5.57e-57 190
MS.gene028739.t1 AT1G76420 52.147 163 73 1 14 176 22 179 2.36e-55 183
MS.gene028739.t1 AT2G24430 51.176 170 78 2 4 173 6 170 5.05e-55 182
MS.gene028739.t1 AT2G24430 51.176 170 78 2 4 173 6 170 5.05e-55 182
MS.gene028739.t1 AT5G39820 42.381 210 104 2 16 208 22 231 3.26e-54 180
MS.gene028739.t1 AT5G07680 55.484 155 65 3 14 168 3 153 5.90e-54 179
MS.gene028739.t1 AT5G07680 55.484 155 65 3 14 168 17 167 6.02e-54 179
MS.gene028739.t1 AT5G53950 53.374 163 73 2 6 168 10 169 1.37e-53 180
MS.gene028739.t1 AT5G39610 53.125 160 61 3 14 168 20 170 5.06e-53 176
MS.gene028739.t1 AT5G13180 55.263 152 60 3 14 165 14 157 9.60e-53 174
MS.gene028739.t1 AT3G04060 52.439 164 75 3 5 168 11 171 1.32e-52 176
MS.gene028739.t1 AT5G61430 52.469 162 73 3 14 175 16 173 2.00e-52 176
MS.gene028739.t1 AT3G15170 54.305 151 67 1 15 165 21 169 3.39e-52 174
MS.gene028739.t1 AT1G65910 51.136 176 77 5 13 186 5 173 4.98e-52 181
MS.gene028739.t1 AT3G29035 60.938 128 48 1 14 141 24 149 2.44e-51 172
MS.gene028739.t1 AT2G02450 54.667 150 61 3 16 165 53 195 3.33e-51 174
MS.gene028739.t1 AT2G02450 54.667 150 61 3 16 165 53 195 3.35e-51 174
MS.gene028739.t1 AT5G18270 51.534 163 76 3 6 168 13 172 3.87e-51 172
MS.gene028739.t1 AT3G17730 52.229 157 67 4 14 168 6 156 4.99e-51 169
MS.gene028739.t1 AT3G03200 51.875 160 66 4 13 168 5 157 7.53e-51 175
MS.gene028739.t1 AT5G18270 51.534 163 76 3 6 168 13 172 8.70e-51 171
MS.gene028739.t1 AT3G18400 50.625 160 72 2 14 173 5 157 1.19e-50 170
MS.gene028739.t1 AT2G33480 53.896 154 58 4 14 165 15 157 2.09e-50 168
MS.gene028739.t1 AT2G33480 53.896 154 56 4 14 165 15 155 3.06e-50 168
MS.gene028739.t1 AT2G17040 43.602 211 99 5 16 220 8 204 3.67e-50 168
MS.gene028739.t1 AT2G43000 49.057 159 76 2 16 174 20 173 4.62e-50 167
MS.gene028739.t1 AT5G17260 51.250 160 67 4 13 168 5 157 7.90e-50 172
MS.gene028739.t1 AT5G46590 50.000 178 78 5 14 187 6 176 9.80e-50 167
MS.gene028739.t1 AT4G10350 51.235 162 70 3 7 165 2 157 1.76e-48 166
MS.gene028739.t1 AT1G79580 50.314 159 68 3 13 168 16 166 2.56e-48 166
MS.gene028739.t1 AT1G79580 50.314 159 68 3 13 168 16 166 2.56e-48 166
MS.gene028739.t1 AT1G79580 50.314 159 68 3 13 168 16 166 2.56e-48 166
MS.gene028739.t1 AT1G79580 50.314 159 68 3 13 168 16 166 2.56e-48 166
MS.gene028739.t1 AT1G79580 50.314 159 68 3 13 168 16 166 2.56e-48 166
MS.gene028739.t1 AT4G17980 50.920 163 66 5 13 168 5 160 8.52e-48 161
MS.gene028739.t1 AT4G17980 50.920 163 66 5 13 168 5 160 9.67e-48 162
MS.gene028739.t1 AT1G33280 51.220 164 68 3 8 168 2 156 9.97e-48 162
MS.gene028739.t1 AT1G71930 48.428 159 71 3 13 168 8 158 1.94e-47 162
MS.gene028739.t1 AT1G71930 48.428 159 71 3 13 168 8 158 1.94e-47 162
MS.gene028739.t1 AT4G36160 37.847 288 150 8 13 290 13 281 8.52e-47 162
MS.gene028739.t1 AT4G36160 37.153 288 152 7 13 290 9 277 8.57e-47 162
MS.gene028739.t1 AT4G36160 37.153 288 152 7 13 290 9 277 8.57e-47 162
MS.gene028739.t1 AT1G56010 47.436 156 78 3 14 168 19 171 1.73e-46 160
MS.gene028739.t1 AT4G28530 47.093 172 67 3 14 169 10 173 3.18e-46 160
MS.gene028739.t1 AT2G18060 47.799 159 72 3 13 168 8 158 3.54e-46 160
MS.gene028739.t1 AT2G18060 47.799 159 72 3 13 168 8 158 3.54e-46 160
MS.gene028739.t1 AT3G10480 47.826 161 77 3 10 168 23 178 3.56e-46 162
MS.gene028739.t1 AT5G46590 54.815 135 58 2 14 146 6 139 4.21e-46 157
MS.gene028739.t1 AT1G12260 45.087 173 83 4 15 183 8 172 4.45e-46 159
MS.gene028739.t1 AT5G66300 48.428 159 72 3 13 168 11 162 8.98e-46 157
MS.gene028739.t1 AT3G10480 48.447 161 75 4 10 168 23 177 1.06e-45 160
MS.gene028739.t1 AT1G12260 49.351 154 67 3 15 165 8 153 1.07e-45 159
MS.gene028739.t1 AT1G54330 48.101 158 71 3 13 168 5 153 1.62e-45 157
MS.gene028739.t1 AT1G62700 44.571 175 84 4 15 184 8 174 3.50e-45 158
MS.gene028739.t1 AT1G62700 44.571 175 84 4 15 184 8 174 3.50e-45 158
MS.gene028739.t1 AT1G32770 47.305 167 76 5 14 170 16 180 4.81e-45 157
MS.gene028739.t1 AT5G62380 46.341 164 77 3 14 174 7 162 7.53e-45 156
MS.gene028739.t1 AT5G62380 46.341 164 77 3 14 174 7 162 7.53e-45 156
MS.gene028739.t1 AT3G10490 46.835 158 77 3 13 168 26 178 7.88e-45 153
MS.gene028739.t1 AT3G12977 45.806 155 79 2 14 168 18 167 8.15e-45 154
MS.gene028739.t1 AT2G46770 43.646 181 84 5 14 182 16 190 3.01e-44 155
MS.gene028739.t1 AT1G32510 48.447 161 69 4 14 165 6 161 3.08e-44 153
MS.gene028739.t1 AT3G10500 46.951 164 79 3 7 168 2 159 6.70e-44 158
MS.gene028739.t1 AT3G10490 46.835 158 77 3 13 168 26 178 2.78e-43 154
MS.gene028739.t1 AT1G33060 50.633 158 70 4 13 168 23 174 6.15e-43 157
MS.gene028739.t1 AT1G33060 50.633 158 70 4 13 168 23 174 6.19e-43 156
MS.gene028739.t1 AT3G10480 40.722 194 75 4 10 168 23 211 1.59e-42 154
MS.gene028739.t1 AT4G35580 54.412 136 58 2 7 140 2 135 2.31e-42 153
MS.gene028739.t1 AT4G35580 54.412 136 58 2 7 140 2 135 2.44e-42 153
MS.gene028739.t1 AT4G35580 54.412 136 58 2 7 140 2 135 2.57e-42 153
MS.gene028739.t1 AT1G34180 52.344 128 57 2 16 141 18 143 4.23e-42 151
MS.gene028739.t1 AT3G61910 42.614 176 83 4 14 175 11 182 1.24e-41 147
MS.gene028739.t1 AT5G04410 45.122 164 82 3 7 168 2 159 1.36e-41 152
MS.gene028739.t1 AT1G34180 52.344 128 57 2 16 141 18 143 1.82e-41 151
MS.gene028739.t1 AT1G34190 50.781 128 59 2 16 141 18 143 4.13e-41 150
MS.gene028739.t1 AT5G24590 43.646 181 90 5 13 187 12 186 5.07e-40 145
MS.gene028739.t1 AT3G12910 47.205 161 73 5 16 165 23 182 1.13e-39 141
MS.gene028739.t1 AT1G34180 47.857 140 57 3 16 141 18 155 4.75e-39 143
MS.gene028739.t1 AT5G09330 42.581 155 81 3 16 168 8 156 8.16e-39 143
MS.gene028739.t1 AT5G09330 42.581 155 81 3 16 168 8 156 8.16e-39 143
MS.gene028739.t1 AT5G09330 42.581 155 81 3 16 168 8 156 8.16e-39 143
MS.gene028739.t1 AT5G09330 42.581 155 81 3 16 168 8 156 8.16e-39 143
MS.gene028739.t1 AT5G09330 42.581 155 81 3 16 168 8 156 8.16e-39 143
MS.gene028739.t1 AT1G34180 47.857 140 57 3 16 141 18 155 2.16e-38 143
MS.gene028739.t1 AT3G44290 38.636 176 91 4 16 190 16 175 2.34e-38 136
MS.gene028739.t1 AT2G27300 34.934 229 127 6 16 232 16 234 3.33e-38 138
MS.gene028739.t1 AT5G22290 42.614 176 83 6 13 186 20 179 1.11e-37 137
MS.gene028739.t1 AT3G49530 48.120 133 66 2 13 143 12 143 1.94e-37 138
MS.gene028739.t1 AT3G49530 48.120 133 66 2 13 143 12 143 2.07e-37 139
MS.gene028739.t1 AT3G44290 38.983 177 89 5 16 190 16 175 2.79e-37 136
MS.gene028739.t1 AT5G64060 40.127 157 86 3 14 168 6 156 4.95e-36 133
MS.gene028739.t1 AT5G04395 41.611 149 73 2 8 142 22 170 6.80e-35 125
MS.gene028739.t1 AT1G32870 45.181 166 83 4 8 171 4 163 9.46e-35 132
MS.gene028739.t1 AT1G32870 45.181 166 83 4 8 171 4 163 1.18e-34 132
MS.gene028739.t1 AT1G32870 45.181 166 83 4 8 171 40 199 1.30e-34 132
MS.gene028739.t1 AT5G22380 41.290 155 82 4 17 165 8 159 1.60e-32 120
MS.gene028739.t1 AT5G64530 36.517 178 86 4 14 181 3 163 3.58e-32 118
MS.gene028739.t1 AT5G64530 43.077 130 62 2 14 143 3 120 8.98e-32 116
MS.gene028739.t1 AT5G61430 51.351 111 50 3 65 175 4 110 4.69e-30 115
MS.gene028739.t1 AT3G44350 43.165 139 69 4 17 148 8 143 5.05e-30 112
MS.gene028739.t1 AT4G28530 38.953 172 44 4 14 169 10 136 6.16e-30 116
MS.gene028739.t1 AT3G44350 38.710 186 93 8 17 192 8 182 2.04e-29 113
MS.gene028739.t1 AT4G01550 40.113 177 92 6 17 189 7 173 3.58e-29 116
MS.gene028739.t1 AT1G56010 50.000 106 50 2 63 168 2 104 5.19e-29 112
MS.gene028739.t1 AT4G01520 40.625 160 81 6 15 169 5 155 2.39e-28 111
MS.gene028739.t1 AT3G12977 50.485 103 46 2 66 168 17 114 3.59e-28 109
MS.gene028739.t1 AT2G33480 53.465 101 37 3 67 165 8 100 5.76e-28 108
MS.gene028739.t1 AT4G10350 54.545 99 39 2 67 165 18 110 6.83e-28 110
MS.gene028739.t1 AT4G01540 40.506 158 80 6 17 169 7 155 4.06e-27 110
MS.gene028739.t1 AT4G01540 40.506 158 80 6 17 169 7 155 4.65e-27 109
MS.gene028739.t1 AT4G01540 40.506 158 80 6 17 169 7 155 4.92e-27 110
MS.gene028739.t1 AT4G01540 40.506 158 80 6 17 169 7 155 5.54e-27 110
MS.gene028739.t1 AT3G04420 36.478 159 86 4 15 169 4 151 1.40e-25 103
MS.gene028739.t1 AT3G04420 36.478 159 86 4 15 169 4 151 2.35e-25 104
MS.gene028739.t1 AT1G02230 39.231 130 71 4 15 139 4 130 3.14e-23 98.6
MS.gene028739.t1 AT1G01010 34.595 185 94 7 17 188 6 176 1.39e-21 94.7
MS.gene028739.t1 AT5G14000 38.931 131 74 4 14 142 15 141 2.12e-21 89.4
MS.gene028739.t1 AT2G43000 46.465 99 48 2 76 174 2 95 3.44e-21 89.7
MS.gene028739.t1 AT5G14000 38.931 131 74 4 14 142 15 141 6.51e-21 89.4
MS.gene028739.t1 AT1G02250 33.125 160 91 5 15 169 4 152 3.28e-20 90.1
MS.gene028739.t1 AT1G02220 37.984 129 71 4 15 139 4 127 1.72e-19 88.6
MS.gene028739.t1 AT3G56530 36.232 138 77 4 8 139 46 178 4.60e-18 83.6
MS.gene028739.t1 AT3G10490 47.561 82 38 2 87 168 2 78 8.48e-17 80.5
MS.gene028739.t1 AT3G10490 47.561 82 38 2 87 168 2 78 8.48e-17 80.5
MS.gene028739.t1 AT3G55210 30.769 169 91 6 12 165 9 166 3.33e-15 75.1
MS.gene028739.t1 AT5G50820 32.353 136 80 5 14 146 17 143 2.08e-14 71.2
MS.gene028739.t1 AT5G22290 49.367 79 27 3 93 170 2 68 9.73e-14 70.1
MS.gene028739.t1 AT2G18060 45.455 77 34 2 92 168 2 70 1.19e-13 70.5
MS.gene028739.t1 AT1G28470 32.877 146 77 8 13 141 76 217 8.24e-12 65.5
MS.gene028739.t1 AT3G04430 39.423 104 59 4 20 121 6 107 1.61e-11 63.2

Find 64 sgRNAs with CRISPR-Local

Find 72 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATCCACATGAAGAAATTAT+TGG 0.169206 2.1:-9126845 None:intergenic
TCACCCCTTGGTAGGTTTAA+TGG 0.204888 2.1:-9127202 None:intergenic
CCTGAAGCTGCTGTTCTATT+TGG 0.206711 2.1:-9126794 None:intergenic
ATGTCGGGTTTGAGCGTTAA+TGG 0.254915 2.1:+9127340 MS.gene028739:CDS
TGGAAAAGTGTAATTTGATT+TGG 0.281222 2.1:-9126457 None:intergenic
TTGATGGAGGGACAACAAAA+TGG 0.308259 2.1:+9126432 None:intergenic
GGTAGGTTTAATGGTATGTT+TGG 0.328988 2.1:-9127193 None:intergenic
GAACAGCAGCTTCAGGATAC+TGG 0.343249 2.1:+9126801 MS.gene028739:CDS
GATTGAAAGTTCACGTTTGT+AGG 0.360351 2.1:-9127232 None:intergenic
TTATGTCGGGTTCGAAATAA+AGG 0.361202 2.1:+9127124 MS.gene028739:CDS
TTAATCCATTCGGATACTTT+CGG 0.372999 2.1:-9126769 None:intergenic
GAAAGTATCCGAATGGATTA+AGG 0.374920 2.1:+9126771 MS.gene028739:CDS
CCAAATAGAACAGCAGCTTC+AGG 0.393395 2.1:+9126794 MS.gene028739:CDS
CTTTGTTTGGTGAGGAAGAA+TGG 0.399941 2.1:+9126726 MS.gene028739:CDS
TTCGGATACTTTCGGTCTCT+CGG 0.404947 2.1:-9126761 None:intergenic
TCAGGATACTGGAAGGCAAC+TGG 0.417107 2.1:+9126812 MS.gene028739:CDS
GCTATAATCGACGCTGGAAG+TGG 0.423391 2.1:-9126552 None:intergenic
ATAACTTCAGTTTCTGAAGA+AGG 0.424888 2.1:+9127379 MS.gene028739:CDS
CTATTTGGCCTTAATCCATT+CGG 0.425340 2.1:-9126779 None:intergenic
ATCATAGCCTCTATTCTAGT+TGG 0.432373 2.1:+9127292 MS.gene028739:CDS
TTATTCAGGTAGACCTCCTA+AGG 0.433041 2.1:+9126901 MS.gene028739:CDS
TATGCAGAGAAGTCTTTGTT+TGG 0.458147 2.1:+9126713 MS.gene028739:intron
CAATCTGTCTTAACTCCCTT+AGG 0.472334 2.1:-9126917 None:intergenic
TTGAAGTAACATTCTAAAGA+AGG 0.474571 2.1:-9127433 None:intergenic
CTAAGGGAGTTAAGACAGAT+TGG 0.476497 2.1:+9126918 MS.gene028739:CDS
TTTGAGTTTGAATGATTTCG+TGG 0.477326 2.1:-9126972 None:intergenic
TTGCTGATATCTTTATGTAA+AGG 0.481819 2.1:-9127587 None:intergenic
TCATGTGGATCAAAGCATAT+AGG 0.483990 2.1:+9126857 MS.gene028739:CDS
AATGGTATGTTTGGTTCACT+AGG 0.489315 2.1:-9127184 None:intergenic
GATCATGAATGAGTATAGAT+TGG 0.501119 2.1:+9126940 MS.gene028739:CDS
ATCTCTATAAGTATAATCCA+TGG 0.503265 2.1:+9126583 MS.gene028739:CDS
GTAGGACGTTCTTCACCCCT+TGG 0.504800 2.1:-9127214 None:intergenic
GGATGACTGGGTATTATGTC+GGG 0.505374 2.1:+9127111 MS.gene028739:CDS
TGGATGACTGGGTATTATGT+CGG 0.511953 2.1:+9127110 MS.gene028739:CDS
CCCGACATATTCTCAGTTGG+AGG 0.519660 2.1:-9127325 None:intergenic
CCTCCAACTGAGAATATGTC+GGG 0.520657 2.1:+9127325 MS.gene028739:CDS
ATAGCCTCTATTCTAGTTGG+AGG 0.523275 2.1:+9127295 MS.gene028739:CDS
AACTCCTCCAACTAGAATAG+AGG 0.529579 2.1:-9127299 None:intergenic
AACATACTTGGTAATTCCCA+TGG 0.531160 2.1:-9126600 None:intergenic
TGAAGTAACATTCTAAAGAA+GGG 0.537880 2.1:-9127432 None:intergenic
AAGCCAATAATTTCTTCATG+TGG 0.547565 2.1:+9126842 MS.gene028739:CDS
GCATAAAATTCTTTGATGGA+GGG 0.552629 2.1:+9126420 None:intergenic
TGAGTTCTTCATCAGAAGGA+TGG 0.561435 2.1:-9126494 None:intergenic
ACGAAATCATTCAAACTCAA+AGG 0.572394 2.1:+9126974 MS.gene028739:CDS
GACGTTCTTCACCCCTTGGT+AGG 0.587479 2.1:-9127210 None:intergenic
TAATTGAAAACTTACCCGCA+TGG 0.592584 2.1:-9126999 None:intergenic
AAACCCGACATATTCTCAGT+TGG 0.595124 2.1:-9127328 None:intergenic
ACTTAAAAGAAAATCTAATG+AGG 0.595312 2.1:+9127459 MS.gene028739:CDS
AGAGAAGTCTTTGTTTGGTG+AGG 0.597719 2.1:+9126718 MS.gene028739:intron
ACCTCCAACTGAGAATATGT+CGG 0.601698 2.1:+9127324 MS.gene028739:CDS
ATTTCAGCTATAATCGACGC+TGG 0.604840 2.1:-9126558 None:intergenic
TCTGTCTTAACTCCCTTAGG+AGG 0.608939 2.1:-9126914 None:intergenic
ACTATGAGTTCTTCATCAGA+AGG 0.609045 2.1:-9126498 None:intergenic
TCTCTATAAGTATAATCCAT+GGG 0.617155 2.1:+9126584 MS.gene028739:CDS
ACATACCATTAAACCTACCA+AGG 0.620960 2.1:+9127197 MS.gene028739:CDS
AGAGACCGAAAGTATCCGAA+TGG 0.624198 2.1:+9126764 MS.gene028739:CDS
CAAACTCAAAGGTTCCATGC+GGG 0.628355 2.1:+9126985 MS.gene028739:CDS
CATACCATTAAACCTACCAA+GGG 0.628364 2.1:+9127198 MS.gene028739:CDS
TATTCAGGTAGACCTCCTAA+GGG 0.630503 2.1:+9126902 MS.gene028739:CDS
AGCAGCTTCAGGATACTGGA+AGG 0.648622 2.1:+9126805 MS.gene028739:CDS
GAAGGATGGAATCTGAAACC+AGG 0.664271 2.1:-9126480 None:intergenic
GGATGGAATCTGAAACCAGG+TGG 0.688994 2.1:-9126477 None:intergenic
TCAAACTCAAAGGTTCCATG+CGG 0.709010 2.1:+9126984 MS.gene028739:CDS
ATACCATTAAACCTACCAAG+GGG 0.738597 2.1:+9127199 MS.gene028739:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACTTAAAAGAAAATCTAATG+AGG + chr2.1:9127459-9127478 MS.gene028739:CDS 20.0%
!! TCATTATGATAAACAAGATT+TGG - chr2.1:9126669-9126688 None:intergenic 20.0%
!!! TCATTAGATTTTCTTTTAAG+TGG - chr2.1:9127460-9127479 None:intergenic 20.0%
! ATCTCTATAAGTATAATCCA+TGG + chr2.1:9126583-9126602 MS.gene028739:CDS 25.0%
! TCTCTATAAGTATAATCCAT+GGG + chr2.1:9126584-9126603 MS.gene028739:CDS 25.0%
!! TGAAGTAACATTCTAAAGAA+GGG - chr2.1:9127435-9127454 None:intergenic 25.0%
!! TGGAAAAGTGTAATTTGATT+TGG - chr2.1:9126460-9126479 None:intergenic 25.0%
!! TTGAAGTAACATTCTAAAGA+AGG - chr2.1:9127436-9127455 None:intergenic 25.0%
!!! AAATCTCTTGTGTTTTATTC+AGG + chr2.1:9126887-9126906 MS.gene028739:CDS 25.0%
AAAGAAGTCAAGAACATACT+TGG - chr2.1:9126615-9126634 None:intergenic 30.0%
AAGCCAATAATTTCTTCATG+TGG + chr2.1:9126842-9126861 MS.gene028739:CDS 30.0%
ACGAAATCATTCAAACTCAA+AGG + chr2.1:9126974-9126993 MS.gene028739:CDS 30.0%
AGTTCAAGCACTATGAATAA+AGG - chr2.1:9127055-9127074 None:intergenic 30.0%
GATCATGAATGAGTATAGAT+TGG + chr2.1:9126940-9126959 MS.gene028739:CDS 30.0%
GATCCACATGAAGAAATTAT+TGG - chr2.1:9126848-9126867 None:intergenic 30.0%
GTTCAAGCACTATGAATAAA+GGG - chr2.1:9127054-9127073 None:intergenic 30.0%
TTAATCCATTCGGATACTTT+CGG - chr2.1:9126772-9126791 None:intergenic 30.0%
! ATAACTTCAGTTTCTGAAGA+AGG + chr2.1:9127379-9127398 MS.gene028739:CDS 30.0%
! TTTGAGTTTGAATGATTTCG+TGG - chr2.1:9126975-9126994 None:intergenic 30.0%
ACATACCATTAAACCTACCA+AGG + chr2.1:9127197-9127216 MS.gene028739:CDS 35.0%
ACTATGAGTTCTTCATCAGA+AGG - chr2.1:9126501-9126520 None:intergenic 35.0%
ATACCATTAAACCTACCAAG+GGG + chr2.1:9127199-9127218 MS.gene028739:CDS 35.0%
ATCATAGCCTCTATTCTAGT+TGG + chr2.1:9127292-9127311 MS.gene028739:CDS 35.0%
CATACCATTAAACCTACCAA+GGG + chr2.1:9127198-9127217 MS.gene028739:CDS 35.0%
GATTGAAAGTTCACGTTTGT+AGG - chr2.1:9127235-9127254 None:intergenic 35.0%
GGTAGGTTTAATGGTATGTT+TGG - chr2.1:9127196-9127215 None:intergenic 35.0%
TAATTGAAAACTTACCCGCA+TGG - chr2.1:9127002-9127021 None:intergenic 35.0%
TATGCAGAGAAGTCTTTGTT+TGG + chr2.1:9126713-9126732 MS.gene028739:intron 35.0%
TCATGTGGATCAAAGCATAT+AGG + chr2.1:9126857-9126876 MS.gene028739:CDS 35.0%
TTATGTCGGGTTCGAAATAA+AGG + chr2.1:9127124-9127143 MS.gene028739:CDS 35.0%
! AACATACTTGGTAATTCCCA+TGG - chr2.1:9126603-9126622 None:intergenic 35.0%
! AATGGTATGTTTGGTTCACT+AGG - chr2.1:9127187-9127206 None:intergenic 35.0%
! TCAAATTACACTTTTCCACC+TGG + chr2.1:9126462-9126481 MS.gene028739:CDS 35.0%
!! AGCTTTTGAAAATCGATGCT+AGG - chr2.1:9127556-9127575 None:intergenic 35.0%
!! CTATTTGGCCTTAATCCATT+CGG - chr2.1:9126782-9126801 None:intergenic 35.0%
!! GAAAGTATCCGAATGGATTA+AGG + chr2.1:9126771-9126790 MS.gene028739:CDS 35.0%
AAACCCGACATATTCTCAGT+TGG - chr2.1:9127331-9127350 None:intergenic 40.0%
AACTCCTCCAACTAGAATAG+AGG - chr2.1:9127302-9127321 None:intergenic 40.0%
ACCTCCAACTGAGAATATGT+CGG + chr2.1:9127324-9127343 MS.gene028739:CDS 40.0%
ATTTCAGCTATAATCGACGC+TGG - chr2.1:9126561-9126580 None:intergenic 40.0%
CAATCTGTCTTAACTCCCTT+AGG - chr2.1:9126920-9126939 None:intergenic 40.0%
CTAAGGGAGTTAAGACAGAT+TGG + chr2.1:9126918-9126937 MS.gene028739:CDS 40.0%
TATTCAGGTAGACCTCCTAA+GGG + chr2.1:9126902-9126921 MS.gene028739:CDS 40.0%
TCAAACTCAAAGGTTCCATG+CGG + chr2.1:9126984-9127003 MS.gene028739:CDS 40.0%
TGAGTTCTTCATCAGAAGGA+TGG - chr2.1:9126497-9126516 None:intergenic 40.0%
TGGATGACTGGGTATTATGT+CGG + chr2.1:9127110-9127129 MS.gene028739:CDS 40.0%
TTATTCAGGTAGACCTCCTA+AGG + chr2.1:9126901-9126920 MS.gene028739:CDS 40.0%
! AGAGAAGTCTTTGTTTGGTG+AGG + chr2.1:9126718-9126737 MS.gene028739:intron 40.0%
! ATAGCCTCTATTCTAGTTGG+AGG + chr2.1:9127295-9127314 MS.gene028739:CDS 40.0%
! CTTTGTTTGGTGAGGAAGAA+TGG + chr2.1:9126726-9126745 MS.gene028739:CDS 40.0%
!! CATTTCTCTGCTTTTACAGC+TGG + chr2.1:9127090-9127109 MS.gene028739:intron 40.0%
ATGTCGGGTTTGAGCGTTAA+TGG + chr2.1:9127340-9127359 MS.gene028739:CDS 45.0%
CAAACTCAAAGGTTCCATGC+GGG + chr2.1:9126985-9127004 MS.gene028739:CDS 45.0%
CCAAATAGAACAGCAGCTTC+AGG + chr2.1:9126794-9126813 MS.gene028739:CDS 45.0%
CCTCCAACTGAGAATATGTC+GGG + chr2.1:9127325-9127344 MS.gene028739:CDS 45.0%
CCTGAAGCTGCTGTTCTATT+TGG - chr2.1:9126797-9126816 None:intergenic 45.0%
GGATGACTGGGTATTATGTC+GGG + chr2.1:9127111-9127130 MS.gene028739:CDS 45.0%
TCACCCCTTGGTAGGTTTAA+TGG - chr2.1:9127205-9127224 None:intergenic 45.0%
TCTGTCTTAACTCCCTTAGG+AGG - chr2.1:9126917-9126936 None:intergenic 45.0%
TTCGGATACTTTCGGTCTCT+CGG - chr2.1:9126764-9126783 None:intergenic 45.0%
! GAAGGATGGAATCTGAAACC+AGG - chr2.1:9126483-9126502 None:intergenic 45.0%
! GCTTTTACAGCTGGATGACT+GGG + chr2.1:9127099-9127118 MS.gene028739:intron 45.0%
! TGCTTTTACAGCTGGATGAC+TGG + chr2.1:9127098-9127117 MS.gene028739:intron 45.0%
!! AGAGACCGAAAGTATCCGAA+TGG + chr2.1:9126764-9126783 MS.gene028739:CDS 45.0%
AGCAGCTTCAGGATACTGGA+AGG + chr2.1:9126805-9126824 MS.gene028739:CDS 50.0%
CCCGACATATTCTCAGTTGG+AGG - chr2.1:9127328-9127347 None:intergenic 50.0%
GAACAGCAGCTTCAGGATAC+TGG + chr2.1:9126801-9126820 MS.gene028739:CDS 50.0%
GCTATAATCGACGCTGGAAG+TGG - chr2.1:9126555-9126574 None:intergenic 50.0%
TCAGGATACTGGAAGGCAAC+TGG + chr2.1:9126812-9126831 MS.gene028739:CDS 50.0%
! GGATGGAATCTGAAACCAGG+TGG - chr2.1:9126480-9126499 None:intergenic 50.0%
GACGTTCTTCACCCCTTGGT+AGG - chr2.1:9127213-9127232 None:intergenic 55.0%
GTAGGACGTTCTTCACCCCT+TGG - chr2.1:9127217-9127236 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 9126435 9127597 9126435 ID=MS.gene028739
chr2.1 mRNA 9126435 9127597 9126435 ID=MS.gene028739.t1;Parent=MS.gene028739
chr2.1 exon 9126435 9126615 9126435 ID=MS.gene028739.t1.exon1;Parent=MS.gene028739.t1
chr2.1 CDS 9126435 9126615 9126435 ID=cds.MS.gene028739.t1;Parent=MS.gene028739.t1
chr2.1 exon 9126720 9127006 9126720 ID=MS.gene028739.t1.exon2;Parent=MS.gene028739.t1
chr2.1 CDS 9126720 9127006 9126720 ID=cds.MS.gene028739.t1;Parent=MS.gene028739.t1
chr2.1 exon 9127109 9127597 9127109 ID=MS.gene028739.t1.exon3;Parent=MS.gene028739.t1
chr2.1 CDS 9127109 9127597 9127109 ID=cds.MS.gene028739.t1;Parent=MS.gene028739.t1
Gene Sequence

>MS.gene028739

ATGGAGGGACAACAAAATGGATCCAAATCAAATTACACTTTTCCACCTGGTTTCAGATTCCATCCTTCTGATGAAGAACTCATAGTTCATTACTTGCAAAACAAAATCAAATCGCGTCCACTTCCAGCGTCGATTATAGCTGAAATTGATCTCTATAAGTATAATCCATGGGAATTACCAAGTATGTTCTTGACTTCTTTCACTCTTTGTATTCTTAGTATATAGTATATACCAAATCTTGTTTATCATAATGAACATGTTTTGCTTTTTCTTGTGATTATGCAGAGAAGTCTTTGTTTGGTGAGGAAGAATGGTATTTCTTTAGTCCGAGAGACCGAAAGTATCCGAATGGATTAAGGCCAAATAGAACAGCAGCTTCAGGATACTGGAAGGCAACTGGAACTGATAAGCCAATAATTTCTTCATGTGGATCAAAGCATATAGGAGTGAAGAAATCTCTTGTGTTTTATTCAGGTAGACCTCCTAAGGGAGTTAAGACAGATTGGATCATGAATGAGTATAGATTGGTCGACACAACCACGAAATCATTCAAACTCAAAGGTTCCATGCGGGTAAGTTTTCAATTAATAAGCATTTATTCATAGTGAGACTGTGACCCTTTATTCATAGTGCTTGAACTCAATGCAATAATAAGCATTTCTCTGCTTTTACAGCTGGATGACTGGGTATTATGTCGGGTTCGAAATAAAGGCTATTCATTGAAGAATTTATCTGAAAATCAAGAGAATCCTAGTGAACCAAACATACCATTAAACCTACCAAGGGGTGAAGAACGTCCTACAAACGTGAACTTTCAATCTGACATGATCAAAGATTATCAGTTCAAAGACTATCAGATCATAGCCTCTATTCTAGTTGGAGGAGTTATACCTCCAACTGAGAATATGTCGGGTTTGAGCGTTAATGGAAGCAAATGCAACAACATAACTTCAGTTTCTGAAGAAGGTTTCAATAAAGTGAATTCTCAAACTAAAATCCCTTCTTTAGAATGTTACTTCAATCCACTTAAAAGAAAATCTAATGAGGATGATGATCAGTTTGAACATCTCATTTCTTTTAACAGCAAGTTCAACACTGAGAACAAATTAGACAAATCTCCTAGCATCGATTTTCAAAAGCTAAACGAATTTACCTTTACATAA
Protein sequence

>MS.gene028739.t1

MEGQQNGSKSNYTFPPGFRFHPSDEELIVHYLQNKIKSRPLPASIIAEIDLYKYNPWELPKKSLFGEEEWYFFSPRDRKYPNGLRPNRTAASGYWKATGTDKPIISSCGSKHIGVKKSLVFYSGRPPKGVKTDWIMNEYRLVDTTTKSFKLKGSMRLDDWVLCRVRNKGYSLKNLSENQENPSEPNIPLNLPRGEERPTNVNFQSDMIKDYQFKDYQIIASILVGGVIPPTENMSGLSVNGSKCNNITSVSEEGFNKVNSQTKIPSLECYFNPLKRKSNEDDDQFEHLISFNSKFNTENKLDKSPSIDFQKLNEFTFT