Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene028852.t1 | XP_024630170.1 | 55.5 | 732 | 17 | 2 | 1 | 423 | 1 | 732 | 2.50E-196 | 694.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene028852.t1 | Q9SZL8 | 34.0 | 191 | 119 | 3 | 7 | 190 | 70 | 260 | 3.5e-21 | 104.4 |
| MS.gene028852.t1 | Q9SZL8 | 38.3 | 47 | 29 | 0 | 219 | 265 | 594 | 640 | 2.7e-05 | 51.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene028852.t1 | A0A1S2XKF4 | 35.8 | 709 | 150 | 8 | 1 | 420 | 1 | 693 | 2.7e-99 | 372.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene028852.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene028852.t1 | MTR_7g074790 | 83.133 | 166 | 10 | 1 | 1 | 166 | 1 | 148 | 2.92e-92 | 279 |
| MS.gene028852.t1 | MTR_7g074790 | 90.741 | 54 | 5 | 0 | 368 | 421 | 157 | 210 | 8.85e-27 | 108 |
| MS.gene028852.t1 | MTR_5g039760 | 55.689 | 167 | 49 | 2 | 1 | 166 | 1 | 143 | 1.82e-53 | 177 |
| MS.gene028852.t1 | MTR_7g061980 | 66.387 | 119 | 40 | 0 | 1 | 119 | 1 | 119 | 1.41e-48 | 162 |
| MS.gene028852.t1 | MTR_3g058090 | 50.000 | 124 | 40 | 2 | 234 | 357 | 5 | 106 | 1.82e-27 | 105 |
| MS.gene028852.t1 | MTR_0402s0040 | 41.250 | 160 | 89 | 4 | 10 | 166 | 26 | 183 | 5.44e-27 | 113 |
| MS.gene028852.t1 | MTR_4g102720 | 36.076 | 158 | 67 | 2 | 6 | 163 | 3 | 126 | 2.69e-25 | 103 |
| MS.gene028852.t1 | MTR_5g015480 | 35.593 | 177 | 102 | 5 | 10 | 182 | 56 | 224 | 7.58e-21 | 92.0 |
| MS.gene028852.t1 | MTR_4g069880 | 58.824 | 68 | 28 | 0 | 1 | 68 | 1 | 68 | 9.85e-20 | 83.2 |
| MS.gene028852.t1 | MTR_1g019850 | 35.664 | 143 | 79 | 4 | 3 | 141 | 63 | 196 | 5.54e-17 | 80.5 |
| MS.gene028852.t1 | MTR_2g099430 | 47.674 | 86 | 43 | 2 | 35 | 119 | 28 | 112 | 5.52e-15 | 71.6 |
| MS.gene028852.t1 | MTR_2g070590 | 40.385 | 104 | 58 | 3 | 10 | 110 | 17 | 119 | 9.10e-14 | 68.2 |
| MS.gene028852.t1 | MTR_6g017200 | 44.578 | 83 | 44 | 2 | 10 | 91 | 58 | 139 | 1.22e-13 | 68.9 |
| MS.gene028852.t1 | MTR_5g045210 | 34.653 | 101 | 63 | 2 | 236 | 334 | 20 | 119 | 3.25e-13 | 68.6 |
| MS.gene028852.t1 | MTR_7g113010 | 39.370 | 127 | 61 | 3 | 10 | 134 | 457 | 569 | 9.25e-13 | 70.9 |
| MS.gene028852.t1 | MTR_6g022080 | 29.605 | 152 | 102 | 4 | 16 | 163 | 91 | 241 | 1.69e-12 | 67.8 |
| MS.gene028852.t1 | MTR_6g051425 | 26.630 | 184 | 121 | 6 | 9 | 180 | 13 | 194 | 2.79e-12 | 68.2 |
| MS.gene028852.t1 | MTR_1g070355 | 27.389 | 157 | 107 | 3 | 15 | 166 | 79 | 233 | 7.39e-12 | 67.8 |
| MS.gene028852.t1 | MTR_5g076070 | 26.738 | 187 | 123 | 4 | 13 | 193 | 56 | 234 | 2.12e-11 | 65.1 |
| MS.gene028852.t1 | MTR_1g057920 | 43.373 | 83 | 45 | 2 | 10 | 91 | 34 | 115 | 2.33e-11 | 61.2 |
| MS.gene028852.t1 | MTR_2g098880 | 35.593 | 118 | 65 | 4 | 2 | 112 | 53 | 166 | 8.49e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene028852.t1 | AT4G38180 | 34.031 | 191 | 119 | 3 | 7 | 190 | 70 | 260 | 7.45e-20 | 93.2 |
| MS.gene028852.t1 | AT3G59470 | 40.187 | 107 | 56 | 4 | 9 | 111 | 69 | 171 | 6.40e-13 | 68.9 |
| MS.gene028852.t1 | AT3G59470 | 40.187 | 107 | 56 | 4 | 9 | 111 | 69 | 171 | 6.40e-13 | 68.9 |
| MS.gene028852.t1 | AT3G59470 | 40.187 | 107 | 56 | 4 | 9 | 111 | 81 | 183 | 7.56e-13 | 68.9 |
| MS.gene028852.t1 | AT5G18960 | 40.385 | 104 | 46 | 3 | 9 | 110 | 42 | 131 | 9.44e-13 | 70.9 |
| MS.gene028852.t1 | AT5G18960 | 40.385 | 104 | 46 | 3 | 9 | 110 | 42 | 131 | 9.44e-13 | 70.9 |
| MS.gene028852.t1 | AT3G06250 | 39.423 | 104 | 47 | 3 | 9 | 110 | 27 | 116 | 3.62e-12 | 69.3 |
| MS.gene028852.t1 | AT3G06250 | 40.000 | 85 | 49 | 1 | 211 | 295 | 658 | 740 | 9.71e-11 | 64.7 |
| MS.gene028852.t1 | AT3G06250 | 39.423 | 104 | 47 | 3 | 9 | 110 | 27 | 116 | 3.62e-12 | 69.3 |
| MS.gene028852.t1 | AT3G06250 | 40.000 | 85 | 49 | 1 | 211 | 295 | 658 | 740 | 9.71e-11 | 64.7 |
| MS.gene028852.t1 | AT3G06250 | 39.423 | 104 | 47 | 3 | 9 | 110 | 27 | 116 | 3.62e-12 | 69.3 |
| MS.gene028852.t1 | AT3G06250 | 40.000 | 85 | 49 | 1 | 211 | 295 | 658 | 740 | 9.71e-11 | 64.7 |
| MS.gene028852.t1 | AT4G15090 | 27.468 | 233 | 153 | 8 | 3 | 226 | 44 | 269 | 1.54e-11 | 67.4 |
| MS.gene028852.t1 | AT4G15090 | 27.468 | 233 | 153 | 8 | 3 | 226 | 44 | 269 | 1.54e-11 | 67.4 |
| MS.gene028852.t1 | AT4G15090 | 27.468 | 233 | 153 | 8 | 3 | 226 | 44 | 269 | 1.54e-11 | 67.4 |
| MS.gene028852.t1 | AT4G15090 | 27.468 | 233 | 153 | 8 | 3 | 226 | 44 | 269 | 1.54e-11 | 67.4 |
| MS.gene028852.t1 | AT4G15090 | 27.468 | 233 | 153 | 8 | 3 | 226 | 44 | 269 | 1.54e-11 | 67.4 |
Find 74 sgRNAs with CRISPR-Local
Find 165 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTACACTTTCAAGTATAAA+TGG | 0.233543 | 2.3:+9514485 | MS.gene028852:CDS |
| AGCAAGTGCATGTATGAAAT+TGG | 0.242669 | 2.3:+9515262 | MS.gene028852:CDS |
| TCAAATTTCATTCCAAGTTT+TGG | 0.248103 | 2.3:-9514251 | None:intergenic |
| GATTGAGCGTGTTTACTTGC+AGG | 0.306060 | 2.3:-9516275 | None:intergenic |
| TTTGGAGGCAGTTCAGGCTT+GGG | 0.317011 | 2.3:+9516907 | MS.gene028852:CDS |
| GTCAATGAACATAATCTTCA+TGG | 0.336161 | 2.3:+9515322 | MS.gene028852:CDS |
| TAGAGAATTAACAACTAATA+TGG | 0.346505 | 2.3:+9516411 | MS.gene028852:CDS |
| CTTGAATCCCTTTGGTTGCA+TGG | 0.357010 | 2.3:-9516180 | None:intergenic |
| TGGCCGATGACTCTGGATTA+AGG | 0.372007 | 2.3:+9514627 | MS.gene028852:CDS |
| CTTCTTAAAATATACCTATC+AGG | 0.372035 | 2.3:-9515894 | None:intergenic |
| GTGTTACACAACTATGTTGA+TGG | 0.375026 | 2.3:+9516499 | MS.gene028852:CDS |
| CAGAATGGAATTAAACATCT+TGG | 0.376869 | 2.3:+9515199 | MS.gene028852:intron |
| GGTTGTTTCTTGAATCCCTT+TGG | 0.400183 | 2.3:-9516188 | None:intergenic |
| TGTAAGAAGTATGATACATT+TGG | 0.401457 | 2.3:+9515816 | MS.gene028852:CDS |
| TGGCTTCTTCAAATGATGAT+TGG | 0.406507 | 2.3:+9514225 | MS.gene028852:CDS |
| TCTCTTGATTTAGTAGATCA+TGG | 0.415252 | 2.3:-9514544 | None:intergenic |
| TTCAAGTATAAATGGAAAGT+TGG | 0.416231 | 2.3:+9514493 | MS.gene028852:CDS |
| ATCTTGCACAATGCCACAAC+GGG | 0.416657 | 2.3:-9515931 | None:intergenic |
| GAATTAAACATCTTGGAAAC+AGG | 0.417860 | 2.3:+9515206 | MS.gene028852:CDS |
| TGAGAAAGCTTGGTTGGACT+TGG | 0.419812 | 2.3:+9515300 | MS.gene028852:CDS |
| CGCTTAGTTCCCTTTGAGCC+GGG | 0.421477 | 2.3:-9516209 | None:intergenic |
| ATAATCTTCATGGTTCATCT+TGG | 0.427912 | 2.3:+9515332 | MS.gene028852:CDS |
| TATACCTGTGAACTTCTTTG+AGG | 0.430697 | 2.3:-9516311 | None:intergenic |
| ATGTAGGTTTGTTTGTTGTA+AGG | 0.438102 | 2.3:+9514379 | MS.gene028852:CDS |
| TATGCTTTACGTGAGGGCTT+CGG | 0.441084 | 2.3:+9514308 | MS.gene028852:CDS |
| ATTTGAGCTGAACGATGTTA+AGG | 0.448624 | 2.3:+9515866 | MS.gene028852:CDS |
| TTAGAGTACGCTTTACAAAC+AGG | 0.450669 | 2.3:+9514333 | MS.gene028852:CDS |
| ATTCGGTTTCTAGATAACTT+AGG | 0.453820 | 2.3:-9515981 | None:intergenic |
| TCGCTTAGTTCCCTTTGAGC+CGG | 0.456094 | 2.3:-9516210 | None:intergenic |
| AAGAAACAACCCGGCTCAAA+GGG | 0.456155 | 2.3:+9516200 | MS.gene028852:CDS |
| GATGATTGGAAGCCAAAACT+TGG | 0.457457 | 2.3:+9514239 | MS.gene028852:CDS |
| ATTGATATGGCCGATGACTC+TGG | 0.457637 | 2.3:+9514620 | MS.gene028852:CDS |
| ACAAGCATATGAGATTGATA+TGG | 0.463781 | 2.3:+9514607 | MS.gene028852:CDS |
| AGACAACTAGTCTGAACATT+CGG | 0.469894 | 2.3:-9515998 | None:intergenic |
| ACATATCCTCACGTGCTAGC+GGG | 0.476750 | 2.3:-9516474 | None:intergenic |
| AGGTTTGTTTGTTGTAAGGA+AGG | 0.486878 | 2.3:+9514383 | MS.gene028852:CDS |
| TCATTGTCTCTACCTTGTGT+TGG | 0.489570 | 2.3:-9516125 | None:intergenic |
| TTTGTTGTAAGGAAGGAATA+CGG | 0.490669 | 2.3:+9514390 | MS.gene028852:CDS |
| TTGGAGGCAGTTCAGGCTTG+GGG | 0.496067 | 2.3:+9516908 | MS.gene028852:CDS |
| ACCTGTGAACTTCTTTGAGG+TGG | 0.503799 | 2.3:-9516308 | None:intergenic |
| GCATCAGAACTCTCAAATGA+TGG | 0.506034 | 2.3:-9516158 | None:intergenic |
| ATGTTAAGGTGATTCCTGAT+AGG | 0.509691 | 2.3:+9515880 | MS.gene028852:CDS |
| GAGGATAAATGTGCATATGA+AGG | 0.510730 | 2.3:+9514419 | MS.gene028852:CDS |
| TTCACTTGCTTGCTTGCCTG+AGG | 0.511637 | 2.3:+9516945 | MS.gene028852:CDS |
| CATATCCTCACGTGCTAGCG+GGG | 0.512934 | 2.3:-9516473 | None:intergenic |
| CTTGCTTATGCTTTACGTGA+GGG | 0.518622 | 2.3:+9514302 | MS.gene028852:CDS |
| CAAGAAACAACCCGGCTCAA+AGG | 0.525961 | 2.3:+9516199 | MS.gene028852:CDS |
| GGAAGGAATACGGAAGAAAG+AGG | 0.542787 | 2.3:+9514400 | MS.gene028852:CDS |
| CCTTGCTTATGCTTTACGTG+AGG | 0.544741 | 2.3:+9514301 | MS.gene028852:CDS |
| AACTTCTTTGAGGTGGGACA+CGG | 0.545922 | 2.3:-9516301 | None:intergenic |
| TTCTGATGCCATGCAACCAA+AGG | 0.548134 | 2.3:+9516172 | MS.gene028852:CDS |
| CAACTTATGAGCACACATGC+AGG | 0.548940 | 2.3:+9514665 | MS.gene028852:CDS |
| GAAATTTGACACTAGAGAAG+AGG | 0.556802 | 2.3:+9514265 | MS.gene028852:CDS |
| ACGGTAGTGTATCATCATGT+AGG | 0.562646 | 2.3:+9514363 | MS.gene028852:CDS |
| CTGCCTTAATCCAGAGTCAT+CGG | 0.562647 | 2.3:-9514630 | None:intergenic |
| GCAGGGCATAGCGCTAATGT+TGG | 0.568818 | 2.3:+9514683 | MS.gene028852:CDS |
| CTTGGAAACAGGATGAAGAA+AGG | 0.571819 | 2.3:+9515217 | MS.gene028852:CDS |
| TTAACAACTAATATGGTCGA+TGG | 0.578359 | 2.3:+9516418 | MS.gene028852:CDS |
| CCCACCTCAAAGAAGTTCAC+AGG | 0.579192 | 2.3:+9516307 | MS.gene028852:CDS |
| CCTGTGAACTTCTTTGAGGT+GGG | 0.581279 | 2.3:-9516307 | None:intergenic |
| TCTGATGCCATGCAACCAAA+GGG | 0.584367 | 2.3:+9516173 | MS.gene028852:CDS |
| AACTTATGAGCACACATGCA+GGG | 0.596381 | 2.3:+9514666 | MS.gene028852:CDS |
| AATCTTGCACAATGCCACAA+CGG | 0.597437 | 2.3:-9515932 | None:intergenic |
| AACATATCCTCACGTGCTAG+CGG | 0.615108 | 2.3:-9516475 | None:intergenic |
| CGCTAATGTTGGATTTACAG+AGG | 0.620951 | 2.3:+9514694 | MS.gene028852:CDS |
| TGACTCTGGATTAAGGCAGA+AGG | 0.626414 | 2.3:+9514634 | MS.gene028852:CDS |
| TGTCTCTAAGTTCATTAGAG+CGG | 0.630054 | 2.3:+9516016 | MS.gene028852:CDS |
| ATATCCTCACGTGCTAGCGG+GGG | 0.659146 | 2.3:-9516472 | None:intergenic |
| TGGACAAGAGAAGCCCGTTG+TGG | 0.666264 | 2.3:+9515918 | MS.gene028852:CDS |
| CCTCACGTAAAGCATAAGCA+AGG | 0.669280 | 2.3:-9514301 | None:intergenic |
| TAATGTTGGATTTACAGAGG+TGG | 0.672534 | 2.3:+9514697 | MS.gene028852:CDS |
| TTTACAAACAGGAAGAAAGA+CGG | 0.687186 | 2.3:+9514344 | MS.gene028852:CDS |
| AAGGGATTCAAGAAACAACC+CGG | 0.691658 | 2.3:+9516191 | MS.gene028852:CDS |
| GTAACAGAATGTCCAACACA+AGG | 0.694581 | 2.3:+9516113 | MS.gene028852:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTTTTGTTATTAATGT+AGG | + | chr2.3:9516589-9516608 | MS.gene028852:intron | 10.0% |
| !! | TAGAGAATTAACAACTAATA+TGG | + | chr2.3:9516411-9516430 | MS.gene028852:CDS | 20.0% |
| !!! | ATTACACTTTCAAGTATAAA+TGG | + | chr2.3:9514485-9514504 | MS.gene028852:CDS | 20.0% |
| !!! | TAATGTTGCATAATCATTTT+AGG | + | chr2.3:9516387-9516406 | MS.gene028852:intron | 20.0% |
| ! | AGACAATTCCATCATTTAAA+TGG | + | chr2.3:9515038-9515057 | MS.gene028852:intron | 25.0% |
| ! | CCAATATTTGTATCATCAAA+AGG | - | chr2.3:9516617-9516636 | None:intergenic | 25.0% |
| ! | CTTCTTAAAATATACCTATC+AGG | - | chr2.3:9515897-9515916 | None:intergenic | 25.0% |
| ! | GTAAAATGCAGTTATAAAAG+TGG | + | chr2.3:9516751-9516770 | MS.gene028852:intron | 25.0% |
| ! | TACAAAAAGACAAAGAAGTA+TGG | + | chr2.3:9514739-9514758 | MS.gene028852:intron | 25.0% |
| ! | TCAAACAACCATTTAAATGA+TGG | - | chr2.3:9515049-9515068 | None:intergenic | 25.0% |
| ! | TTCAAGTATAAATGGAAAGT+TGG | + | chr2.3:9514493-9514512 | MS.gene028852:CDS | 25.0% |
| !! | TCAAATTTCATTCCAAGTTT+TGG | - | chr2.3:9514254-9514273 | None:intergenic | 25.0% |
| !! | TGTAAGAAGTATGATACATT+TGG | + | chr2.3:9515816-9515835 | MS.gene028852:CDS | 25.0% |
| !!! | ATAGGTATATTTTAAGAAGG+TGG | + | chr2.3:9515898-9515917 | MS.gene028852:CDS | 25.0% |
| !!! | CCTTTTGATGATACAAATAT+TGG | + | chr2.3:9516614-9516633 | MS.gene028852:intron | 25.0% |
| !!! | CTGATAGGTATATTTTAAGA+AGG | + | chr2.3:9515895-9515914 | MS.gene028852:CDS | 25.0% |
| AAAAAAAGCAAGTGGTCTAT+TGG | - | chr2.3:9514960-9514979 | None:intergenic | 30.0% | |
| AAACATTTCGAAAGAGTTGT+TGG | + | chr2.3:9515508-9515527 | MS.gene028852:intron | 30.0% | |
| AAACCAGAAAAAAAAGCAAG+TGG | - | chr2.3:9514968-9514987 | None:intergenic | 30.0% | |
| AAATGATCGTACCTCTATAA+TGG | - | chr2.3:9514994-9515013 | None:intergenic | 30.0% | |
| AACAGATTACAAATGTGTTC+TGG | + | chr2.3:9514855-9514874 | MS.gene028852:intron | 30.0% | |
| AACATTTCGAAAGAGTTGTT+GGG | + | chr2.3:9515509-9515528 | MS.gene028852:intron | 30.0% | |
| ACAAGCATATGAGATTGATA+TGG | + | chr2.3:9514607-9514626 | MS.gene028852:CDS | 30.0% | |
| ATAATCTTCATGGTTCATCT+TGG | + | chr2.3:9515332-9515351 | MS.gene028852:CDS | 30.0% | |
| CAAATATGATCTTGGATTAC+GGG | + | chr2.3:9514885-9514904 | MS.gene028852:intron | 30.0% | |
| CAGAATGGAATTAAACATCT+TGG | + | chr2.3:9515199-9515218 | MS.gene028852:intron | 30.0% | |
| CATCTGATATGCATAAAAGA+AGG | - | chr2.3:9514825-9514844 | None:intergenic | 30.0% | |
| CTTCTTACAACTACAAGTAA+TGG | - | chr2.3:9515805-9515824 | None:intergenic | 30.0% | |
| GAATTAAACATCTTGGAAAC+AGG | + | chr2.3:9515206-9515225 | MS.gene028852:CDS | 30.0% | |
| GCAAATATGATCTTGGATTA+CGG | + | chr2.3:9514884-9514903 | MS.gene028852:intron | 30.0% | |
| GTCAATGAACATAATCTTCA+TGG | + | chr2.3:9515322-9515341 | MS.gene028852:CDS | 30.0% | |
| GTGCATATGAAGGAAAAATT+CGG | + | chr2.3:9514429-9514448 | MS.gene028852:CDS | 30.0% | |
| TCTCTTGATTTAGTAGATCA+TGG | - | chr2.3:9514547-9514566 | None:intergenic | 30.0% | |
| TGATATGCATAAAAGAAGGA+CGG | - | chr2.3:9514821-9514840 | None:intergenic | 30.0% | |
| TTAACAACTAATATGGTCGA+TGG | + | chr2.3:9516418-9516437 | MS.gene028852:CDS | 30.0% | |
| TTTACAAACAGGAAGAAAGA+CGG | + | chr2.3:9514344-9514363 | MS.gene028852:CDS | 30.0% | |
| ! | AGAGTTAGTTTCATGTCTAA+TGG | - | chr2.3:9515709-9515728 | None:intergenic | 30.0% |
| ! | ATGTTGTCTAAAACCGAATT+TGG | + | chr2.3:9515468-9515487 | MS.gene028852:intron | 30.0% |
| ! | ATTCGGTTTCTAGATAACTT+AGG | - | chr2.3:9515984-9516003 | None:intergenic | 30.0% |
| ! | CTTCTTTTATGCATATCAGA+TGG | + | chr2.3:9514823-9514842 | MS.gene028852:intron | 30.0% |
| ! | GAGTTAGTTTCATGTCTAAT+GGG | - | chr2.3:9515708-9515727 | None:intergenic | 30.0% |
| ! | TGTTGTCTAAAACCGAATTT+GGG | + | chr2.3:9515469-9515488 | MS.gene028852:intron | 30.0% |
| ! | TTTGTTGTAAGGAAGGAATA+CGG | + | chr2.3:9514390-9514409 | MS.gene028852:CDS | 30.0% |
| !! | ATGTAGGTTTGTTTGTTGTA+AGG | + | chr2.3:9514379-9514398 | MS.gene028852:CDS | 30.0% |
| !! | TATAGAGGTACGATCATTTT+TGG | + | chr2.3:9514995-9515014 | MS.gene028852:intron | 30.0% |
| !!! | TTTTGGTGATGTTGTTTCAT+TGG | + | chr2.3:9514910-9514929 | MS.gene028852:intron | 30.0% |
| AATTGCAGGATACCCAAATT+CGG | - | chr2.3:9515484-9515503 | None:intergenic | 35.0% | |
| ACATTTCGAAAGAGTTGTTG+GGG | + | chr2.3:9515510-9515529 | MS.gene028852:intron | 35.0% | |
| AGCAAGTGCATGTATGAAAT+TGG | + | chr2.3:9515262-9515281 | MS.gene028852:CDS | 35.0% | |
| ATGTTAAGGTGATTCCTGAT+AGG | + | chr2.3:9515880-9515899 | MS.gene028852:CDS | 35.0% | |
| ATTTGAGCTGAACGATGTTA+AGG | + | chr2.3:9515866-9515885 | MS.gene028852:CDS | 35.0% | |
| CGAAATGTTTGAAGAATTGC+AGG | - | chr2.3:9515498-9515517 | None:intergenic | 35.0% | |
| GAAATTTGACACTAGAGAAG+AGG | + | chr2.3:9514265-9514284 | MS.gene028852:CDS | 35.0% | |
| GAGGATAAATGTGCATATGA+AGG | + | chr2.3:9514419-9514438 | MS.gene028852:CDS | 35.0% | |
| GTGTGATGCAAATATGATCT+TGG | + | chr2.3:9514877-9514896 | MS.gene028852:intron | 35.0% | |
| GTGTTACACAACTATGTTGA+TGG | + | chr2.3:9516499-9516518 | MS.gene028852:CDS | 35.0% | |
| TAATGTTGGATTTACAGAGG+TGG | + | chr2.3:9514697-9514716 | MS.gene028852:CDS | 35.0% | |
| TATACCTGTGAACTTCTTTG+AGG | - | chr2.3:9516314-9516333 | None:intergenic | 35.0% | |
| TATGAAGGAAAAATTCGGAG+AGG | + | chr2.3:9514434-9514453 | MS.gene028852:CDS | 35.0% | |
| TCACCATTACTACTCCAAAT+GGG | + | chr2.3:9515604-9515623 | MS.gene028852:intron | 35.0% | |
| TCGATCTCAATCGAAAGAAA+CGG | + | chr2.3:9516653-9516672 | MS.gene028852:intron | 35.0% | |
| TGGCTTCTTCAAATGATGAT+TGG | + | chr2.3:9514225-9514244 | MS.gene028852:CDS | 35.0% | |
| TGTCTCTAAGTTCATTAGAG+CGG | + | chr2.3:9516016-9516035 | MS.gene028852:CDS | 35.0% | |
| TTAGAGTACGCTTTACAAAC+AGG | + | chr2.3:9514333-9514352 | MS.gene028852:CDS | 35.0% | |
| TTCACCATTACTACTCCAAA+TGG | + | chr2.3:9515603-9515622 | MS.gene028852:intron | 35.0% | |
| TTTCTTTCGATTGAGATCGA+AGG | - | chr2.3:9516653-9516672 | None:intergenic | 35.0% | |
| ! | AGACAAAGAAGTATGGTGTA+TGG | + | chr2.3:9514746-9514765 | MS.gene028852:intron | 35.0% |
| ! | AGACAACTAGTCTGAACATT+CGG | - | chr2.3:9516001-9516020 | None:intergenic | 35.0% |
| ! | ATCACTAATGAGAAGCATGA+AGG | + | chr2.3:9515744-9515763 | MS.gene028852:intron | 35.0% |
| ! | ATCTTGGATTACGGGTATTT+TGG | + | chr2.3:9514893-9514912 | MS.gene028852:intron | 35.0% |
| ! | GTATTTTCAACGACAGTTGT+TGG | + | chr2.3:9514790-9514809 | MS.gene028852:intron | 35.0% |
| ! | TCTGGTTTCAACCATTATAG+AGG | + | chr2.3:9514980-9514999 | MS.gene028852:intron | 35.0% |
| ! | TGGCATTGTGCAAGATTTTA+GGG | + | chr2.3:9515938-9515957 | MS.gene028852:CDS | 35.0% |
| !! | AAGCAGATTTTGAGAAAGCT+TGG | + | chr2.3:9515290-9515309 | MS.gene028852:CDS | 35.0% |
| !! | ACAGTTAGTTTGCATCTACA+GGG | + | chr2.3:9516705-9516724 | MS.gene028852:intron | 35.0% |
| !! | AGATTTTGAGAAAGCTTGGT+TGG | + | chr2.3:9515294-9515313 | MS.gene028852:CDS | 35.0% |
| !! | AGGTTTGTTTGTTGTAAGGA+AGG | + | chr2.3:9514383-9514402 | MS.gene028852:CDS | 35.0% |
| !! | ATGAAGGAAGCATTAACACT+TGG | + | chr2.3:9515400-9515419 | MS.gene028852:intron | 35.0% |
| !! | TACAGTTAGTTTGCATCTAC+AGG | + | chr2.3:9516704-9516723 | MS.gene028852:intron | 35.0% |
| !!! | AGACCACTTGCTTTTTTTTC+TGG | + | chr2.3:9514962-9514981 | MS.gene028852:intron | 35.0% |
| AACTTATGAGCACACATGCA+GGG | + | chr2.3:9514666-9514685 | MS.gene028852:CDS | 40.0% | |
| AAGGGATTCAAGAAACAACC+CGG | + | chr2.3:9516191-9516210 | MS.gene028852:CDS | 40.0% | |
| AATCTTGCACAATGCCACAA+CGG | - | chr2.3:9515935-9515954 | None:intergenic | 40.0% | |
| ACCAAAGTCAAGCAATGTCT+AGG | + | chr2.3:9515119-9515138 | MS.gene028852:intron | 40.0% | |
| ACGGTAGTGTATCATCATGT+AGG | + | chr2.3:9514363-9514382 | MS.gene028852:CDS | 40.0% | |
| CCAAAGTCAAGCAATGTCTA+GGG | + | chr2.3:9515120-9515139 | MS.gene028852:intron | 40.0% | |
| CGATCTCAATCGAAAGAAAC+GGG | + | chr2.3:9516654-9516673 | MS.gene028852:intron | 40.0% | |
| CGCTAATGTTGGATTTACAG+AGG | + | chr2.3:9514694-9514713 | MS.gene028852:CDS | 40.0% | |
| CTTGCTTATGCTTTACGTGA+GGG | + | chr2.3:9514302-9514321 | MS.gene028852:CDS | 40.0% | |
| CTTGGAAACAGGATGAAGAA+AGG | + | chr2.3:9515217-9515236 | MS.gene028852:CDS | 40.0% | |
| GATCTCAATCGAAAGAAACG+GGG | + | chr2.3:9516655-9516674 | MS.gene028852:intron | 40.0% | |
| GATGATTGGAAGCCAAAACT+TGG | + | chr2.3:9514239-9514258 | MS.gene028852:CDS | 40.0% | |
| GCATCAGAACTCTCAAATGA+TGG | - | chr2.3:9516161-9516180 | None:intergenic | 40.0% | |
| GTAACAGAATGTCCAACACA+AGG | + | chr2.3:9516113-9516132 | MS.gene028852:CDS | 40.0% | |
| GTGTGTATATCTCTCCCATT+TGG | - | chr2.3:9515621-9515640 | None:intergenic | 40.0% | |
| TAACCTTGCAAGCTTATGTG+AGG | - | chr2.3:9515572-9515591 | None:intergenic | 40.0% | |
| TCATTGTCTCTACCTTGTGT+TGG | - | chr2.3:9516128-9516147 | None:intergenic | 40.0% | |
| ! | ATGGGCTGCATGTTATATGA+AGG | + | chr2.3:9515384-9515403 | MS.gene028852:intron | 40.0% |
| ! | GCATCTACAGGGTTGTATTT+TGG | + | chr2.3:9516716-9516735 | MS.gene028852:intron | 40.0% |
| ! | GGCATTGTGCAAGATTTTAG+GGG | + | chr2.3:9515939-9515958 | MS.gene028852:CDS | 40.0% |
| ! | GTGGCATTGTGCAAGATTTT+AGG | + | chr2.3:9515937-9515956 | MS.gene028852:CDS | 40.0% |
| ! | TCTCCCATTTGGAGTAGTAA+TGG | - | chr2.3:9515610-9515629 | None:intergenic | 40.0% |
| !! | GCAAGATTTTAGGGGAAAAG+AGG | + | chr2.3:9515947-9515966 | MS.gene028852:CDS | 40.0% |
| !! | GGTTGTTTCTTGAATCCCTT+TGG | - | chr2.3:9516191-9516210 | None:intergenic | 40.0% |
| !!! | CTACAGGGTTGTATTTTGGT+TGG | + | chr2.3:9516720-9516739 | MS.gene028852:intron | 40.0% |
| AACATATCCTCACGTGCTAG+CGG | - | chr2.3:9516478-9516497 | None:intergenic | 45.0% | |
| AAGAAACAACCCGGCTCAAA+GGG | + | chr2.3:9516200-9516219 | MS.gene028852:CDS | 45.0% | |
| AAGTGGTCTATTGGCATCGT+TGG | - | chr2.3:9514951-9514970 | None:intergenic | 45.0% | |
| AGTCCTCACATAAGCTTGCA+AGG | + | chr2.3:9515566-9515585 | MS.gene028852:intron | 45.0% | |
| AGTGCCATGTGCATAAACCA+TGG | - | chr2.3:9515174-9515193 | None:intergenic | 45.0% | |
| ATCTTGCACAATGCCACAAC+GGG | - | chr2.3:9515934-9515953 | None:intergenic | 45.0% | |
| ATTGATATGGCCGATGACTC+TGG | + | chr2.3:9514620-9514639 | MS.gene028852:CDS | 45.0% | |
| CAACTTATGAGCACACATGC+AGG | + | chr2.3:9514665-9514684 | MS.gene028852:CDS | 45.0% | |
| CATAAACCATGGTGAGTCTC+AGG | - | chr2.3:9515163-9515182 | None:intergenic | 45.0% | |
| CCCTAGACATTGCTTGACTT+TGG | - | chr2.3:9515123-9515142 | None:intergenic | 45.0% | |
| CCTCACGTAAAGCATAAGCA+AGG | - | chr2.3:9514304-9514323 | None:intergenic | 45.0% | |
| CCTTGCTTATGCTTTACGTG+AGG | + | chr2.3:9514301-9514320 | MS.gene028852:CDS | 45.0% | |
| CTCACCATGGTTTATGCACA+TGG | + | chr2.3:9515167-9515186 | MS.gene028852:intron | 45.0% | |
| CTGCCTTAATCCAGAGTCAT+CGG | - | chr2.3:9514633-9514652 | None:intergenic | 45.0% | |
| CTTGAATCCCTTTGGTTGCA+TGG | - | chr2.3:9516183-9516202 | None:intergenic | 45.0% | |
| GATTGAGCGTGTTTACTTGC+AGG | - | chr2.3:9516278-9516297 | None:intergenic | 45.0% | |
| GGAAGGAATACGGAAGAAAG+AGG | + | chr2.3:9514400-9514419 | MS.gene028852:CDS | 45.0% | |
| GGCATCGTTGGTACAATATG+TGG | - | chr2.3:9514939-9514958 | None:intergenic | 45.0% | |
| GGTCAGTGAAGATCGTCTTT+GGG | - | chr2.3:9515102-9515121 | None:intergenic | 45.0% | |
| TATGCTTTACGTGAGGGCTT+CGG | + | chr2.3:9514308-9514327 | MS.gene028852:CDS | 45.0% | |
| TCTGATGCCATGCAACCAAA+GGG | + | chr2.3:9516173-9516192 | MS.gene028852:CDS | 45.0% | |
| TGACTCTGGATTAAGGCAGA+AGG | + | chr2.3:9514634-9514653 | MS.gene028852:CDS | 45.0% | |
| TGAGAAAGCTTGGTTGGACT+TGG | + | chr2.3:9515300-9515319 | MS.gene028852:CDS | 45.0% | |
| TGGTCAGTGAAGATCGTCTT+TGG | - | chr2.3:9515103-9515122 | None:intergenic | 45.0% | |
| TTCTGATGCCATGCAACCAA+AGG | + | chr2.3:9516172-9516191 | MS.gene028852:CDS | 45.0% | |
| ! | ACATGGCACTTGTTGCAGAA+TGG | + | chr2.3:9515184-9515203 | MS.gene028852:intron | 45.0% |
| ! | ACCTGTGAACTTCTTTGAGG+TGG | - | chr2.3:9516311-9516330 | None:intergenic | 45.0% |
| !! | AACTTCTTTGAGGTGGGACA+CGG | - | chr2.3:9516304-9516323 | None:intergenic | 45.0% |
| !! | CCTGTGAACTTCTTTGAGGT+GGG | - | chr2.3:9516310-9516329 | None:intergenic | 45.0% |
| !!! | GCAGGAGCACTTCTTTTCTT+GGG | - | chr2.3:9516260-9516279 | None:intergenic | 45.0% |
| !!! | GCATTTTTTGGAGGCAGTTC+AGG | + | chr2.3:9516901-9516920 | MS.gene028852:CDS | 45.0% |
| !!! | TGCAGGAGCACTTCTTTTCT+TGG | - | chr2.3:9516261-9516280 | None:intergenic | 45.0% |
| !! | TTATGAAATAAAAAAAAAAT+GGG | + | chr2.3:9515366-9515385 | MS.gene028852:intron | 5.0% |
| !! | TTTATGAAATAAAAAAAAAA+TGG | + | chr2.3:9515365-9515384 | MS.gene028852:intron | 5.0% |
| ACATATCCTCACGTGCTAGC+GGG | - | chr2.3:9516477-9516496 | None:intergenic | 50.0% | |
| CAAGAAACAACCCGGCTCAA+AGG | + | chr2.3:9516199-9516218 | MS.gene028852:CDS | 50.0% | |
| CCCACCTCAAAGAAGTTCAC+AGG | + | chr2.3:9516307-9516326 | MS.gene028852:CDS | 50.0% | |
| TCAATCGAAAGAAACGGGGC+TGG | + | chr2.3:9516659-9516678 | MS.gene028852:intron | 50.0% | |
| TCGCTTAGTTCCCTTTGAGC+CGG | - | chr2.3:9516213-9516232 | None:intergenic | 50.0% | |
| TGGCCGATGACTCTGGATTA+AGG | + | chr2.3:9514627-9514646 | MS.gene028852:CDS | 50.0% | |
| TTTGGAGGCAGTTCAGGCTT+GGG | + | chr2.3:9516907-9516926 | MS.gene028852:CDS | 50.0% | |
| ! | AGTATGGTGTATGGTGACGC+TGG | + | chr2.3:9514755-9514774 | MS.gene028852:intron | 50.0% |
| ! | CAGTTCAGGCTTGGGGTTTT+TGG | + | chr2.3:9516915-9516934 | MS.gene028852:CDS | 50.0% |
| ! | TTTTCTTGGGCTGACGCTCA+AGG | - | chr2.3:9516247-9516266 | None:intergenic | 50.0% |
| !! | TTTTGGAGGCAGTTCAGGCT+TGG | + | chr2.3:9516906-9516925 | MS.gene028852:CDS | 50.0% |
| !!! | GCAGCAGCTGCTGCATTTTT+TGG | + | chr2.3:9516889-9516908 | MS.gene028852:CDS | 50.0% |
| !!! | GCAGCTGCTGCATTTTTTGG+AGG | + | chr2.3:9516892-9516911 | MS.gene028852:CDS | 50.0% |
| ATATCCTCACGTGCTAGCGG+GGG | - | chr2.3:9516475-9516494 | None:intergenic | 55.0% | |
| CATATCCTCACGTGCTAGCG+GGG | - | chr2.3:9516476-9516495 | None:intergenic | 55.0% | |
| CGCTTAGTTCCCTTTGAGCC+GGG | - | chr2.3:9516212-9516231 | None:intergenic | 55.0% | |
| CTAGCGGGGGCTCATAAGTT+GGG | - | chr2.3:9516462-9516481 | None:intergenic | 55.0% | |
| GCAGGGCATAGCGCTAATGT+TGG | + | chr2.3:9514683-9514702 | MS.gene028852:CDS | 55.0% | |
| GTGATGCCTGAGACTCACCA+TGG | + | chr2.3:9515154-9515173 | MS.gene028852:intron | 55.0% | |
| TAGCGGGGGCTCATAAGTTG+GGG | - | chr2.3:9516461-9516480 | None:intergenic | 55.0% | |
| TGGACAAGAGAAGCCCGTTG+TGG | + | chr2.3:9515918-9515937 | MS.gene028852:CDS | 55.0% | |
| TTGGAGGCAGTTCAGGCTTG+GGG | + | chr2.3:9516908-9516927 | MS.gene028852:CDS | 55.0% | |
| GCTAGCGGGGGCTCATAAGT+TGG | - | chr2.3:9516463-9516482 | None:intergenic | 60.0% | |
| ! | AGCGGGGGCTCATAAGTTGG+GGG | - | chr2.3:9516460-9516479 | None:intergenic | 60.0% |
| ! | GGGCTCATAAGTTGGGGGCG+CGG | - | chr2.3:9516455-9516474 | None:intergenic | 65.0% |
| TGAGCCCCCGCTAGCACGTG+AGG | + | chr2.3:9516468-9516487 | MS.gene028852:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.3 | gene | 9514224 | 9516965 | 9514224 | ID=MS.gene028852 |
| chr2.3 | mRNA | 9514224 | 9516965 | 9514224 | ID=MS.gene028852.t1;Parent=MS.gene028852 |
| chr2.3 | exon | 9514224 | 9514721 | 9514224 | ID=MS.gene028852.t1.exon1;Parent=MS.gene028852.t1 |
| chr2.3 | CDS | 9514224 | 9514721 | 9514224 | ID=cds.MS.gene028852.t1;Parent=MS.gene028852.t1 |
| chr2.3 | exon | 9515202 | 9515359 | 9515202 | ID=MS.gene028852.t1.exon2;Parent=MS.gene028852.t1 |
| chr2.3 | CDS | 9515202 | 9515359 | 9515202 | ID=cds.MS.gene028852.t1;Parent=MS.gene028852.t1 |
| chr2.3 | exon | 9515815 | 9516328 | 9515815 | ID=MS.gene028852.t1.exon3;Parent=MS.gene028852.t1 |
| chr2.3 | CDS | 9515815 | 9516328 | 9515815 | ID=cds.MS.gene028852.t1;Parent=MS.gene028852.t1 |
| chr2.3 | exon | 9516409 | 9516520 | 9516409 | ID=MS.gene028852.t1.exon4;Parent=MS.gene028852.t1 |
| chr2.3 | CDS | 9516409 | 9516520 | 9516409 | ID=cds.MS.gene028852.t1;Parent=MS.gene028852.t1 |
| chr2.3 | exon | 9516862 | 9516965 | 9516862 | ID=MS.gene028852.t1.exon5;Parent=MS.gene028852.t1 |
| chr2.3 | CDS | 9516862 | 9516965 | 9516862 | ID=cds.MS.gene028852.t1;Parent=MS.gene028852.t1 |
| Gene Sequence |
| Protein sequence |
