AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene028860

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene028860.t1 MTR_2g090745 96.894 161 5 0 1 161 31 191 2.68e-115 336
MS.gene028860.t1 MTR_2g090745 59.420 69 28 0 154 222 361 429 9.68e-20 87.0
MS.gene028860.t1 MTR_2g099990 88.571 140 16 0 1 140 1 140 2.56e-93 279
MS.gene028860.t1 MTR_2g099990 88.571 140 16 0 1 140 70 209 2.97e-93 281
MS.gene028860.t1 MTR_8g017210 85.333 150 18 1 1 150 86 231 1.04e-92 281
MS.gene028860.t1 MTR_4g059870 86.525 141 18 1 1 140 62 202 2.20e-89 272
MS.gene028860.t1 MTR_1g112270 68.681 182 54 1 1 179 68 249 9.19e-89 272
MS.gene028860.t1 MTR_1g112270 68.681 182 54 1 1 179 79 260 1.49e-88 272
MS.gene028860.t1 MTR_1g094115 84.058 138 22 0 1 138 71 208 8.18e-88 269
MS.gene028860.t1 MTR_1g016010 81.818 143 25 1 1 142 65 207 5.80e-85 259
MS.gene028860.t1 MTR_1g094115 82.836 134 23 0 5 138 58 191 2.74e-84 259
MS.gene028860.t1 MTR_2g093960 75.000 156 34 2 1 151 56 211 1.46e-83 254
MS.gene028860.t1 MTR_2g017720 90.099 101 5 1 1 101 337 432 1.76e-58 190
MS.gene028860.t1 MTR_3g102000 78.788 99 14 2 4 98 36 131 5.98e-49 160
MS.gene028860.t1 MTR_1g093095 35.333 150 82 7 1 137 110 257 5.38e-17 78.2
MS.gene028860.t1 MTR_5g030560 93.548 31 2 0 1 31 30 60 1.42e-14 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene028860.t1 AT1G03840 80.240 167 33 0 1 167 63 229 5.29e-99 296
MS.gene028860.t1 AT1G03840 80.240 167 33 0 1 167 65 231 5.85e-99 296
MS.gene028860.t1 AT5G44160 80.357 168 32 1 1 168 61 227 5.00e-98 293
MS.gene028860.t1 AT5G44160 80.357 168 32 1 1 168 22 188 6.51e-98 291
MS.gene028860.t1 AT5G66730 87.050 139 18 0 1 139 56 194 1.54e-91 278
MS.gene028860.t1 AT3G50700 85.612 139 20 0 1 139 58 196 5.34e-91 275
MS.gene028860.t1 AT4G02670 80.405 148 28 1 1 147 77 224 9.72e-90 270
MS.gene028860.t1 AT4G02670 80.405 148 28 1 1 147 79 226 1.16e-89 270
MS.gene028860.t1 AT1G55110 85.714 140 19 1 1 139 87 226 5.68e-89 270
MS.gene028860.t1 AT1G55110 85.714 140 19 1 1 139 87 226 5.68e-89 270
MS.gene028860.t1 AT1G55110 85.714 140 19 1 1 139 87 226 5.68e-89 270
MS.gene028860.t1 AT3G13810 87.857 140 16 1 1 139 75 214 9.43e-88 268
MS.gene028860.t1 AT2G02080 82.014 139 25 0 1 139 1 139 9.95e-88 266
MS.gene028860.t1 AT2G02080 82.014 139 25 0 1 139 1 139 9.95e-88 266
MS.gene028860.t1 AT3G13810 87.857 140 16 1 1 139 89 228 1.44e-87 268
MS.gene028860.t1 AT3G13810 87.857 140 16 1 1 139 94 233 1.53e-87 268
MS.gene028860.t1 AT3G13810 87.857 140 16 1 1 139 94 233 1.53e-87 268
MS.gene028860.t1 AT5G03150 77.707 157 34 1 1 156 77 233 1.81e-87 267
MS.gene028860.t1 AT2G02080 82.014 139 25 0 1 139 78 216 1.92e-87 267
MS.gene028860.t1 AT2G02080 82.014 139 25 0 1 139 78 216 1.92e-87 267
MS.gene028860.t1 AT2G02080 82.014 139 25 0 1 139 78 216 1.92e-87 267
MS.gene028860.t1 AT2G02080 82.014 139 25 0 1 139 78 216 1.92e-87 267
MS.gene028860.t1 AT3G13810 87.857 140 16 1 1 139 81 220 2.83e-87 266
MS.gene028860.t1 AT3G13810 87.857 140 16 1 1 139 95 234 3.06e-87 267
MS.gene028860.t1 AT3G45260 72.941 170 40 3 1 164 63 232 9.28e-87 263
MS.gene028860.t1 AT3G45260 72.941 170 40 3 1 164 63 232 9.28e-87 263
MS.gene028860.t1 AT2G02070 81.295 139 26 0 1 139 76 214 1.66e-86 267
MS.gene028860.t1 AT2G02070 81.295 139 26 0 1 139 76 214 1.66e-86 267
MS.gene028860.t1 AT1G14580 80.576 139 27 0 1 139 77 215 4.20e-86 263
MS.gene028860.t1 AT1G14580 80.576 139 27 0 1 139 77 215 4.20e-86 263
MS.gene028860.t1 AT1G14580 80.576 139 27 0 1 139 91 229 8.05e-86 262
MS.gene028860.t1 AT5G60470 75.177 141 34 1 1 140 59 199 7.36e-81 248
MS.gene028860.t1 AT5G60470 75.177 141 34 1 1 140 64 204 1.23e-80 248
MS.gene028860.t1 AT5G60470 75.177 141 34 1 1 140 68 208 1.35e-80 248
MS.gene028860.t1 AT1G68130 65.152 132 44 2 1 130 65 196 4.29e-58 189
MS.gene028860.t1 AT1G25250 63.910 133 45 2 1 130 34 166 4.66e-57 185
MS.gene028860.t1 AT1G25250 63.910 133 45 2 1 130 57 189 5.73e-57 185
MS.gene028860.t1 AT2G01940 62.687 134 48 2 1 132 68 201 8.21e-57 186
MS.gene028860.t1 AT2G01940 61.481 135 49 3 1 132 68 202 4.35e-53 177
MS.gene028860.t1 AT1G68130 64.545 110 37 2 23 130 1 110 3.75e-45 153
MS.gene028860.t1 AT2G01940 62.500 112 40 2 23 132 1 112 5.94e-44 150
MS.gene028860.t1 AT1G25250 63.063 111 38 2 23 130 1 111 9.27e-44 149
MS.gene028860.t1 AT1G34370 30.043 233 141 6 1 215 29 257 1.25e-21 90.9
MS.gene028860.t1 AT1G34370 30.043 233 141 6 1 215 239 467 1.25e-20 90.1
MS.gene028860.t1 AT1G34370 30.043 233 141 6 1 215 239 467 1.25e-20 90.1
MS.gene028860.t1 AT5G22890 34.266 143 80 4 1 129 212 354 4.33e-19 84.7
MS.gene028860.t1 AT1G13290 34.337 166 87 9 1 154 96 251 5.13e-18 81.3
MS.gene028860.t1 AT1G34790 35.507 138 79 5 1 129 140 276 7.54e-18 80.5
MS.gene028860.t1 AT3G20880 34.783 138 80 5 1 129 251 387 2.75e-17 80.1
MS.gene028860.t1 AT1G08290 37.500 136 72 6 5 129 179 312 7.80e-17 78.2
MS.gene028860.t1 AT1G51220 33.333 138 82 5 1 129 173 309 1.01e-16 77.8
MS.gene028860.t1 AT3G57670 34.058 138 81 5 1 129 212 348 4.02e-16 76.6

Find 43 sgRNAs with CRISPR-Local

Find 121 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGAAACAGCTAGAATAAA+TGG 0.212216 2.3:+9603576 MS.gene028860:CDS
GTGTTCACAATCATCCTTCT+AGG 0.245754 2.3:+9602586 MS.gene028860:CDS
AATATAAACAACTCATTATT+AGG 0.262088 2.3:+9603606 MS.gene028860:CDS
CAATCATCCTTCTAGGGCTT+TGG 0.273242 2.3:+9602593 MS.gene028860:CDS
AAAGAACGAGCAAAGAAATA+AGG 0.311980 2.3:+9602532 MS.gene028860:CDS
CTGCATGCGACGTCGTTTCA+TGG 0.334137 2.3:-9604298 None:intergenic
TGCAGAATGAAGAGAGCGTT+TGG 0.365539 2.3:+9604316 MS.gene028860:CDS
TCAGCAGAGAGCTACATTTC+AGG 0.365625 2.3:+9604254 MS.gene028860:CDS
AATCATCCTTCTAGGGCTTT+GGG 0.365951 2.3:+9602594 MS.gene028860:CDS
AGGGCTTTGGGAGATTTAAC+TGG 0.380988 2.3:+9602606 MS.gene028860:CDS
GTACTTGCAACAAGTGATCT+TGG 0.393658 2.3:+9604230 MS.gene028860:CDS
GCAGAATGAAGAGAGCGTTT+GGG 0.418512 2.3:+9604317 MS.gene028860:CDS
TCTAGCTGTTTCTTCTGCTA+AGG 0.433712 2.3:-9603568 None:intergenic
TGCATGCGACGTCGTTTCAT+GGG 0.435103 2.3:-9604297 None:intergenic
AAATCTCCCAAAGCCCTAGA+AGG 0.442847 2.3:-9602600 None:intergenic
TTTATGCTGTTCAATCGGAT+TGG 0.446458 2.3:+9602694 MS.gene028860:CDS
AACAACTCATTATTAGGAAT+GGG 0.451735 2.3:+9603612 MS.gene028860:CDS
GACGTGGACATAACCTTCCT+TGG 0.468137 2.3:+9602499 MS.gene028860:CDS
TTGTGAACACATGTCTTCTC+TGG 0.471074 2.3:-9602573 None:intergenic
AAACAACTCATTATTAGGAA+TGG 0.474295 2.3:+9603611 MS.gene028860:CDS
AGAGCGTTTGGGGACAAACT+AGG 0.488786 2.3:+9604328 MS.gene028860:CDS
TACTTGCAACAAGTGATCTT+GGG 0.493836 2.3:+9604231 MS.gene028860:CDS
GGAAGCACGGTGAGAAGAAG+TGG 0.504824 2.3:+9602649 MS.gene028860:CDS
GTTCTTTGCTTCAGCTTCCA+AGG 0.509963 2.3:-9602516 None:intergenic
GAGCGTTTGGGGACAAACTA+GGG 0.510953 2.3:+9604329 MS.gene028860:CDS
GGGATAGCTTTGTCACTCAC+AGG 0.519723 2.3:+9603532 MS.gene028860:CDS
TTTGCTTCAGCTTCCAAGGA+AGG 0.519934 2.3:-9602512 None:intergenic
TGTTCACAATCATCCTTCTA+GGG 0.520918 2.3:+9602587 MS.gene028860:CDS
CGTGTGTGAAATTTGTCTGA+AGG 0.521417 2.3:+9602443 MS.gene028860:CDS
GATTGATGAACTGTGGCAAA+TGG 0.542982 2.3:-9604377 None:intergenic
GCATGCGACGTCGTTTCATG+GGG 0.569588 2.3:-9604296 None:intergenic
GTGTGTGAAATTTGTCTGAA+GGG 0.580518 2.3:+9602444 MS.gene028860:CDS
GGAATGGGAGTTAACAACAT+TGG 0.588635 2.3:+9603627 MS.gene028860:CDS
TGCCACAGTTCATCAATCAA+CGG 0.590617 2.3:+9604382 MS.gene028860:CDS
CAGAATGAAGAGAGCGTTTG+GGG 0.617026 2.3:+9604318 MS.gene028860:CDS
ACAGTTCATCAATCAACGGA+TGG 0.619902 2.3:+9604386 MS.gene028860:CDS
ATGCGACGTCGTTTCATGGG+GGG 0.634658 2.3:-9604294 None:intergenic
CATGCGACGTCGTTTCATGG+GGG 0.652696 2.3:-9604295 None:intergenic
AAAGCTCACTCAAAGACTTG+TGG 0.665203 2.3:+9602717 MS.gene028860:CDS
GGATAGCTTTGTCACTCACA+GGG 0.679845 2.3:+9603533 MS.gene028860:CDS
AGAGAATACAAATGTGACTG+TGG 0.689229 2.3:+9602744 MS.gene028860:CDS
AATCTTCAACTTCATCGACG+TGG 0.715188 2.3:+9602483 MS.gene028860:CDS
ATCCGTTGATTGATGAACTG+TGG 0.722662 2.3:-9604384 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATCAACAATAAATAAAAAA+TGG - chr2.3:9603481-9603500 None:intergenic 10.0%
!! ATCAACAATAAATAAAAAAT+GGG - chr2.3:9603480-9603499 None:intergenic 10.0%
!! TTATATGGAATAAAATAAAA+GGG + chr2.3:9603065-9603084 MS.gene028860:intron 10.0%
!! AAAAAGGTAATAAACTTAAA+AGG - chr2.3:9602893-9602912 None:intergenic 15.0%
!! AATATAAACAACTCATTATT+AGG + chr2.3:9603606-9603625 MS.gene028860:CDS 15.0%
!! CTTATATGGAATAAAATAAA+AGG + chr2.3:9603064-9603083 MS.gene028860:intron 15.0%
!! GATTACTTATCAATATAATT+TGG + chr2.3:9603497-9603516 MS.gene028860:intron 15.0%
!! TAACATCGATAATAATAATA+AGG + chr2.3:9603971-9603990 MS.gene028860:intron 15.0%
!!! TGTTTATAATTTAGAATAGA+GGG + chr2.3:9603397-9603416 MS.gene028860:intron 15.0%
!!! TTGTTTATAATTTAGAATAG+AGG + chr2.3:9603396-9603415 MS.gene028860:intron 15.0%
!! AAATAATAATCACAAAGGAA+AGG - chr2.3:9602991-9603010 None:intergenic 20.0%
!! AACAGAAATAATAATCACAA+AGG - chr2.3:9602996-9603015 None:intergenic 20.0%
!! AATAAATTCTCCTCTAATAA+TGG + chr2.3:9603903-9603922 MS.gene028860:intron 20.0%
!! AATTACTTTGACTAATTTGA+GGG + chr2.3:9603018-9603037 MS.gene028860:intron 20.0%
!! AGAATTAGTATAACATAACT+AGG - chr2.3:9603445-9603464 None:intergenic 20.0%
!! GAATTTATCCAATTACTATT+AGG - chr2.3:9603235-9603254 None:intergenic 20.0%
!! TAATTACTTTGACTAATTTG+AGG + chr2.3:9603017-9603036 MS.gene028860:intron 20.0%
!! TCGATGTTATTATTAACTAA+TGG - chr2.3:9603960-9603979 None:intergenic 20.0%
!!! AAAATTTTATGCTGTTCAAT+CGG + chr2.3:9602689-9602708 MS.gene028860:CDS 20.0%
!!! AGTTTTTCTCTCTAAAATAA+CGG + chr2.3:9603156-9603175 MS.gene028860:intron 20.0%
! AAAAATGAGTTCCTATGTTT+GGG - chr2.3:9603683-9603702 None:intergenic 25.0%
! AAACAACTCATTATTAGGAA+TGG + chr2.3:9603611-9603630 MS.gene028860:CDS 25.0%
! AACAACTCATTATTAGGAAT+GGG + chr2.3:9603612-9603631 MS.gene028860:CDS 25.0%
! AGTAATTGGATAAATTCTCT+TGG + chr2.3:9603238-9603257 MS.gene028860:intron 25.0%
! CAAAAATGTACATTTACTTC+TGG - chr2.3:9603379-9603398 None:intergenic 25.0%
! GTATAGTGCAAATGAAAATT+GGG + chr2.3:9603872-9603891 MS.gene028860:intron 25.0%
! GTTATTAGCTACTAATAGTT+TGG + chr2.3:9602935-9602954 MS.gene028860:intron 25.0%
! TATAACATAACTAGGTTGTA+GGG - chr2.3:9603437-9603456 None:intergenic 25.0%
! TGTATAGTGCAAATGAAAAT+TGG + chr2.3:9603871-9603890 MS.gene028860:intron 25.0%
!! ATCATGGGAATAAATTTTGT+GGG + chr2.3:9604189-9604208 MS.gene028860:intron 25.0%
!! TGGAAAATAGAAGTCTTATA+TGG + chr2.3:9603050-9603069 MS.gene028860:intron 25.0%
AAAGAACGAGCAAAGAAATA+AGG + chr2.3:9602532-9602551 MS.gene028860:CDS 30.0%
ACTAATCAAACATCTAGATC+AGG + chr2.3:9603744-9603763 MS.gene028860:intron 30.0%
GAAAAATGAGTTCCTATGTT+TGG - chr2.3:9603684-9603703 None:intergenic 30.0%
GAAGAAACAGCTAGAATAAA+TGG + chr2.3:9603576-9603595 MS.gene028860:CDS 30.0%
GATCTAGATGTTTGATTAGT+TGG - chr2.3:9603744-9603763 None:intergenic 30.0%
GTATAACATAACTAGGTTGT+AGG - chr2.3:9603438-9603457 None:intergenic 30.0%
TCAACTGAATCATTATTCCT+TGG + chr2.3:9604131-9604150 MS.gene028860:intron 30.0%
! AATAAATTTTGTGGGGTGTA+TGG + chr2.3:9604197-9604216 MS.gene028860:intron 30.0%
! GATCATGGGAATAAATTTTG+TGG + chr2.3:9604188-9604207 MS.gene028860:intron 30.0%
! GCTACTAATAGTTTGGATTT+TGG + chr2.3:9602942-9602961 MS.gene028860:intron 30.0%
! TCATGGGAATAAATTTTGTG+GGG + chr2.3:9604190-9604209 MS.gene028860:intron 30.0%
!! AATATAATTTGGTGCAACAC+AGG + chr2.3:9603508-9603527 MS.gene028860:intron 30.0%
!! TTTGATGATGAGATTGTGAT+TGG - chr2.3:9604049-9604068 None:intergenic 30.0%
!!! GTATAAAGAAGCACTTTTGT+AGG + chr2.3:9602628-9602647 MS.gene028860:CDS 30.0%
AAAGGGACTTAAATCCTCAA+CGG + chr2.3:9603082-9603101 MS.gene028860:intron 35.0%
AATAGTCCAAGTCAAGATCA+TGG + chr2.3:9604173-9604192 MS.gene028860:intron 35.0%
AATTCTCTTGTCCCAAACAT+AGG + chr2.3:9603669-9603688 MS.gene028860:intron 35.0%
AGAGAATACAAATGTGACTG+TGG + chr2.3:9602744-9602763 MS.gene028860:CDS 35.0%
ATAGTCCAAGTCAAGATCAT+GGG + chr2.3:9604174-9604193 MS.gene028860:intron 35.0%
ATGCATGAGATTCATCAACT+TGG + chr2.3:9603825-9603844 MS.gene028860:intron 35.0%
CCGACGCTAAAATTTCAATA+GGG + chr2.3:9603301-9603320 MS.gene028860:intron 35.0%
CGACGCTAAAATTTCAATAG+GGG + chr2.3:9603302-9603321 MS.gene028860:intron 35.0%
CTAGATCAGGTTTATCTCTT+TGG + chr2.3:9603757-9603776 MS.gene028860:intron 35.0%
CTCTTGACATCCATTATTAG+AGG - chr2.3:9603916-9603935 None:intergenic 35.0%
GAGTGAAGCCTAATAGTAAT+TGG + chr2.3:9603224-9603243 MS.gene028860:intron 35.0%
GCAAATGAAAATTGGGTGTT+TGG + chr2.3:9603879-9603898 MS.gene028860:intron 35.0%
GTGTGTGAAATTTGTCTGAA+GGG + chr2.3:9602444-9602463 MS.gene028860:CDS 35.0%
TAATTTGAGGGTTGAGATTG+TGG + chr2.3:9603030-9603049 MS.gene028860:intron 35.0%
TACTTGCAACAAGTGATCTT+GGG + chr2.3:9604231-9604250 MS.gene028860:CDS 35.0%
TCATTATTCCTTGGAAGCTT+AGG + chr2.3:9604140-9604159 MS.gene028860:intron 35.0%
TGCAAAAAGCTGCTCAAATT+GGG + chr2.3:9604102-9604121 MS.gene028860:intron 35.0%
TGCATGAGATTCATCAACTT+GGG + chr2.3:9603826-9603845 MS.gene028860:intron 35.0%
TGTTCACAATCATCCTTCTA+GGG + chr2.3:9602587-9602606 MS.gene028860:CDS 35.0%
TTATTCCCATGATCTTGACT+TGG - chr2.3:9604182-9604201 None:intergenic 35.0%
TTGCAAAAAGCTGCTCAAAT+TGG + chr2.3:9604101-9604120 MS.gene028860:intron 35.0%
TTTATGCTGTTCAATCGGAT+TGG + chr2.3:9602694-9602713 MS.gene028860:CDS 35.0%
! TTGTCTGAAGGGTTTTCAAA+GGG + chr2.3:9602455-9602474 MS.gene028860:CDS 35.0%
! TTTGTCTGAAGGGTTTTCAA+AGG + chr2.3:9602454-9602473 MS.gene028860:CDS 35.0%
!! ACTTGTCTAGTGCTCTAAAA+TGG + chr2.3:9602850-9602869 MS.gene028860:intron 35.0%
!! CCCTATTGAAATTTTAGCGT+CGG - chr2.3:9603304-9603323 None:intergenic 35.0%
!! TCTTGATTTGTGCATGAGAT+TGG - chr2.3:9603720-9603739 None:intergenic 35.0%
AAAGCTCACTCAAAGACTTG+TGG + chr2.3:9602717-9602736 MS.gene028860:CDS 40.0%
AATCTTCAACTTCATCGACG+TGG + chr2.3:9602483-9602502 MS.gene028860:CDS 40.0%
ACAGTTCATCAATCAACGGA+TGG + chr2.3:9604386-9604405 MS.gene028860:CDS 40.0%
ATCTCAAACCTAAGCTTCCA+AGG - chr2.3:9604151-9604170 None:intergenic 40.0%
CGTGTGTGAAATTTGTCTGA+AGG + chr2.3:9602443-9602462 MS.gene028860:CDS 40.0%
CGTTGAAGATAGCTGCAAAA+AGG - chr2.3:9602909-9602928 None:intergenic 40.0%
GATTGATGAACTGTGGCAAA+TGG - chr2.3:9604380-9604399 None:intergenic 40.0%
GCCGACGCTAAAATTTCAAT+AGG + chr2.3:9603300-9603319 MS.gene028860:intron 40.0%
GGAATGGGAGTTAACAACAT+TGG + chr2.3:9603627-9603646 MS.gene028860:CDS 40.0%
GTACTTGCAACAAGTGATCT+TGG + chr2.3:9604230-9604249 MS.gene028860:CDS 40.0%
GTGTTCACAATCATCCTTCT+AGG + chr2.3:9602586-9602605 MS.gene028860:CDS 40.0%
TCAAGTACTATACTCCGTTG+AGG - chr2.3:9603099-9603118 None:intergenic 40.0%
TGCCACAGTTCATCAATCAA+CGG + chr2.3:9604382-9604401 MS.gene028860:CDS 40.0%
TGTTGTGAGCTATACAAGGA+AGG - chr2.3:9604026-9604045 None:intergenic 40.0%
TTGTGAACACATGTCTTCTC+TGG - chr2.3:9602576-9602595 None:intergenic 40.0%
! AAGCACTTTTGTAGGAAGCA+CGG + chr2.3:9602636-9602655 MS.gene028860:CDS 40.0%
! ACTGTGGCACTATCTTTTCA+AGG + chr2.3:9602760-9602779 MS.gene028860:CDS 40.0%
! ATCCGTTGATTGATGAACTG+TGG - chr2.3:9604387-9604406 None:intergenic 40.0%
! GGACAAACTAGGGATTTTCT+TGG + chr2.3:9604339-9604358 MS.gene028860:CDS 40.0%
!! AATCATCCTTCTAGGGCTTT+GGG + chr2.3:9602594-9602613 MS.gene028860:CDS 40.0%
!! ACTAGGGATTTTCTTGGTGT+TGG + chr2.3:9604345-9604364 MS.gene028860:CDS 40.0%
!! ATAATTTGGTGCAACACAGG+AGG + chr2.3:9603511-9603530 MS.gene028860:intron 40.0%
!! TAATTTGGTGCAACACAGGA+GGG + chr2.3:9603512-9603531 MS.gene028860:intron 40.0%
!! TCTAGCTGTTTCTTCTGCTA+AGG - chr2.3:9603571-9603590 None:intergenic 40.0%
!! TTGGTGTTGTGAGCTATACA+AGG - chr2.3:9604030-9604049 None:intergenic 40.0%
AAATCTCCCAAAGCCCTAGA+AGG - chr2.3:9602603-9602622 None:intergenic 45.0%
GTTCTTTGCTTCAGCTTCCA+AGG - chr2.3:9602519-9602538 None:intergenic 45.0%
TCAGCAGAGAGCTACATTTC+AGG + chr2.3:9604254-9604273 MS.gene028860:CDS 45.0%
TTTGCTTCAGCTTCCAAGGA+AGG - chr2.3:9602515-9602534 None:intergenic 45.0%
! TGTTGCTGACATGTTTGCTG+AGG - chr2.3:9604075-9604094 None:intergenic 45.0%
!! AGGGCTTTGGGAGATTTAAC+TGG + chr2.3:9602606-9602625 MS.gene028860:CDS 45.0%
!! CAATCATCCTTCTAGGGCTT+TGG + chr2.3:9602593-9602612 MS.gene028860:CDS 45.0%
!! CAGAATGAAGAGAGCGTTTG+GGG + chr2.3:9604318-9604337 MS.gene028860:CDS 45.0%
!! GCAGAATGAAGAGAGCGTTT+GGG + chr2.3:9604317-9604336 MS.gene028860:CDS 45.0%
!! GGATAGCTTTGTCACTCACA+GGG + chr2.3:9603533-9603552 MS.gene028860:CDS 45.0%
!! TGCAGAATGAAGAGAGCGTT+TGG + chr2.3:9604316-9604335 MS.gene028860:CDS 45.0%
!!! AGGGATTTTCTTGGTGTTGG+TGG + chr2.3:9604348-9604367 MS.gene028860:CDS 45.0%
CATTGCTCCTGTGCTTGTAG+CGG - chr2.3:9603853-9603872 None:intergenic 50.0%
GACGTGGACATAACCTTCCT+TGG + chr2.3:9602499-9602518 MS.gene028860:CDS 50.0%
GAGCGTTTGGGGACAAACTA+GGG + chr2.3:9604329-9604348 MS.gene028860:CDS 50.0%
TGCATGCGACGTCGTTTCAT+GGG - chr2.3:9604300-9604319 None:intergenic 50.0%
! AGAGCGTTTGGGGACAAACT+AGG + chr2.3:9604328-9604347 MS.gene028860:CDS 50.0%
!! GGGATAGCTTTGTCACTCAC+AGG + chr2.3:9603532-9603551 MS.gene028860:CDS 50.0%
ATGCGACGTCGTTTCATGGG+GGG - chr2.3:9604297-9604316 None:intergenic 55.0%
CATGCGACGTCGTTTCATGG+GGG - chr2.3:9604298-9604317 None:intergenic 55.0%
CTGCATGCGACGTCGTTTCA+TGG - chr2.3:9604301-9604320 None:intergenic 55.0%
GCATGCGACGTCGTTTCATG+GGG - chr2.3:9604299-9604318 None:intergenic 55.0%
! GGAAGCACGGTGAGAAGAAG+TGG + chr2.3:9602649-9602668 MS.gene028860:CDS 55.0%
CTTGGGTCCGCTACAAGCAC+AGG + chr2.3:9603843-9603862 MS.gene028860:intron 60.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 9602426 9604419 9602426 ID=MS.gene028860
chr2.3 mRNA 9602426 9604419 9602426 ID=MS.gene028860.t1;Parent=MS.gene028860
chr2.3 exon 9602426 9602781 9602426 ID=MS.gene028860.t1.exon1;Parent=MS.gene028860.t1
chr2.3 CDS 9602426 9602781 9602426 ID=cds.MS.gene028860.t1;Parent=MS.gene028860.t1
chr2.3 exon 9603530 9603648 9603530 ID=MS.gene028860.t1.exon2;Parent=MS.gene028860.t1
chr2.3 CDS 9603530 9603648 9603530 ID=cds.MS.gene028860.t1;Parent=MS.gene028860.t1
chr2.3 exon 9604226 9604419 9604226 ID=MS.gene028860.t1.exon3;Parent=MS.gene028860.t1
chr2.3 CDS 9604226 9604419 9604226 ID=cds.MS.gene028860.t1;Parent=MS.gene028860.t1
Gene Sequence

>MS.gene028860

ATGGCAACAAACAGATTCGTGTGTGAAATTTGTCTGAAGGGTTTTCAAAGGGATCAAAATCTTCAACTTCATCGACGTGGACATAACCTTCCTTGGAAGCTGAAGCAAAGAACGAGCAAAGAAATAAGGAAGAGAGTGTATGTGTGTCCAGAGAAGACATGTGTTCACAATCATCCTTCTAGGGCTTTGGGAGATTTAACTGGTATAAAGAAGCACTTTTGTAGGAAGCACGGTGAGAAGAAGTGGAAGTGTGAGAAGTGCTCAAAATTTTATGCTGTTCAATCGGATTGGAAAGCTCACTCAAAGACTTGTGGTACTAGAGAATACAAATGTGACTGTGGCACTATCTTTTCAAGGTAATTAATTTCTGTTTTCTTAACTCTCAGATATGTCATATACTCAAAAAAATTATGTCAAAGTTGTAACTTGTCTAGTGCTCTAAAATGGATCATCATTGAAAGAATCCTTTTAAGTTTATTACCTTTTTGCAGCTATCTTCAACGACAAAAGTTATTAGCTACTAATAGTTTGGATTTTGGAATTATCTAATTATATTAATCTACCTTTCCTTTGTGATTATTATTTCTGTTTTAATTACTTTGACTAATTTGAGGGTTGAGATTGTGGAAAATAGAAGTCTTATATGGAATAAAATAAAAGGGACTTAAATCCTCAACGGAGTATAGTACTTGAAGTGATCGTTACATTTAAAGAGAAAAACAAATCTACTAGTTTTTCTCTCTAAAATAACGGTCTCTAGCTACTATTGATCACTTAAGATTAAAGAGTTGCAAAGTAGAGTGAAGCCTAATAGTAATTGGATAAATTCTCTTGGATCATACTAATATTCAATAAGCAAATACTTTTCAATTGAGCCGACGCTAAAATTTCAATAGGGGTTTACACTTACTCTAATCTTAACTATAGACAAAAATACACATTTATTATGTCCAGAAGTAAATGTACATTTTTGTTTATAATTTAGAATAGAGGGAATACAAGCTATGACCCTACAACCTAGTTATGTTATACTAATTCTCTTACATTAATTCCCATTTTTTATTTATTGTTGATTACTTATCAATATAATTTGGTGCAACACAGGAGGGATAGCTTTGTCACTCACAGGGCATTCTGTGATGCCTTAGCAGAAGAAACAGCTAGAATAAATGGATCAGCAAATATAAACAACTCATTATTAGGAATGGGAGTTAACAACATTGGTAATTACAACATCATGCAAAATTCTCTTGTCCCAAACATAGGAACTCATTTTTCTTCAATTTTCAAACCAATCTCATGCACAAATCAAGAACCAACTAATCAAACATCTAGATCAGGTTTATCTCTTTGGATGTCTCAAACATCTCATGACACAATATTGACTAATAATAGCAATATGCATGAGATTCATCAACTTGGGTCCGCTACAAGCACAGGAGCAATGTATAGTGCAAATGAAAATTGGGTGTTTGGAAATAAATTCTCCTCTAATAATGGATGTCAAGAGTTAACTAGTTCTGTTTCACTTCCATTAGTTAATAATAACATCGATAATAATAATAAGGATAGTACTACAAACAATGTTGTTAGTGTTCCTTCCTTGTATAGCTCACAACACCAATCACAATCTCATCATCAAACAACCTCAGCAAACATGTCAGCAACAGCTTTGTTGCAAAAAGCTGCTCAAATTGGGACAACTTCAACTGAATCATTATTCCTTGGAAGCTTAGGTTTGAGATGCAATAGTCCAAGTCAAGATCATGGGAATAAATTTTGTGGGGTGTATGGTTCAAGTTCAGTACTTGCAACAAGTGATCTTGGGTCAGCAGAGAGCTACATTTCAGGTGAATTGTCACAAATGTCCCCCCATGAAACGACGTCGCATGCAGAATGAAGAGAGCGTTTGGGGACAAACTAGGGATTTTCTTGGTGTTGGTGGTGCTAACCATTTGCCACAGTTCATCAATCAACGGATGGATTTGATTTGA
Protein sequence

>MS.gene028860.t1

MATNRFVCEICLKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKRVYVCPEKTCVHNHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKFYAVQSDWKAHSKTCGTREYKCDCGTIFSRRDSFVTHRAFCDALAEETARINGSANINNSLLGMGVNNIVQYLQQVILGQQRATFQVNCHKCPPMKRRRMQNEESVWGQTRDFLGVGGANHLPQFINQRMDLI