Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene028862.t1 | XP_013465160.1 | 99.6 | 270 | 1 | 0 | 1 | 270 | 16 | 285 | 6.10E-158 | 566.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene028862.t1 | O49459 | 81.5 | 195 | 34 | 2 | 10 | 203 | 36 | 229 | 1.2e-93 | 344.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene028862.t1 | A0A072VM12 | 99.6 | 270 | 1 | 0 | 1 | 270 | 16 | 285 | 4.4e-158 | 566.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene028862.t1 | TF | NAC |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene028862.t1 | MTR_2g090735 | 99.630 | 270 | 1 | 0 | 1 | 270 | 16 | 285 | 0.0 | 564 |
MS.gene028862.t1 | MTR_4g078875 | 78.102 | 274 | 52 | 4 | 1 | 270 | 15 | 284 | 3.48e-151 | 423 |
MS.gene028862.t1 | MTR_4g088245 | 68.182 | 264 | 74 | 6 | 11 | 269 | 46 | 304 | 2.90e-124 | 357 |
MS.gene028862.t1 | MTR_2g014680 | 60.456 | 263 | 99 | 3 | 12 | 270 | 32 | 293 | 4.87e-112 | 325 |
MS.gene028862.t1 | MTR_8g069160 | 83.240 | 179 | 29 | 1 | 11 | 189 | 46 | 223 | 6.81e-109 | 315 |
MS.gene028862.t1 | MTR_8g102240 | 73.737 | 198 | 40 | 4 | 12 | 202 | 30 | 222 | 7.98e-96 | 290 |
MS.gene028862.t1 | MTR_8g102240 | 73.737 | 198 | 40 | 4 | 12 | 202 | 30 | 222 | 8.20e-96 | 290 |
MS.gene028862.t1 | MTR_5g053430 | 55.446 | 202 | 86 | 2 | 5 | 206 | 32 | 229 | 1.48e-70 | 224 |
MS.gene028862.t1 | MTR_5g053430 | 55.446 | 202 | 86 | 2 | 5 | 206 | 32 | 229 | 1.78e-70 | 224 |
MS.gene028862.t1 | MTR_1g093680 | 57.068 | 191 | 78 | 2 | 10 | 200 | 37 | 223 | 2.46e-70 | 224 |
MS.gene028862.t1 | MTR_7g033320 | 53.439 | 189 | 84 | 2 | 10 | 197 | 34 | 219 | 1.93e-63 | 207 |
MS.gene028862.t1 | MTR_1g093670 | 51.163 | 172 | 69 | 1 | 29 | 200 | 18 | 174 | 1.17e-49 | 167 |
MS.gene028862.t1 | MTR_4g078895 | 81.132 | 53 | 10 | 0 | 23 | 75 | 26 | 78 | 1.52e-24 | 94.0 |
MS.gene028862.t1 | MTR_1g008740 | 34.731 | 167 | 82 | 8 | 34 | 191 | 13 | 161 | 2.03e-15 | 75.5 |
MS.gene028862.t1 | MTR_1g008740 | 34.731 | 167 | 82 | 8 | 34 | 191 | 27 | 175 | 2.17e-15 | 75.5 |
MS.gene028862.t1 | MTR_3g070030 | 33.333 | 168 | 84 | 7 | 34 | 191 | 19 | 168 | 3.55e-14 | 72.0 |
MS.gene028862.t1 | MTR_7g085260 | 32.995 | 197 | 95 | 9 | 34 | 212 | 17 | 194 | 4.99e-14 | 71.6 |
MS.gene028862.t1 | MTR_3g109340 | 31.492 | 181 | 96 | 8 | 19 | 191 | 9 | 169 | 5.26e-14 | 71.2 |
MS.gene028862.t1 | MTR_6g084430 | 32.934 | 167 | 89 | 6 | 33 | 194 | 4 | 152 | 5.51e-14 | 71.2 |
MS.gene028862.t1 | MTR_3g435150 | 32.787 | 183 | 94 | 8 | 34 | 205 | 16 | 180 | 3.57e-13 | 68.6 |
MS.gene028862.t1 | MTR_2g014700 | 65.116 | 43 | 15 | 0 | 99 | 141 | 44 | 86 | 9.92e-13 | 63.2 |
MS.gene028862.t1 | MTR_4g108760 | 31.579 | 171 | 88 | 7 | 34 | 194 | 17 | 168 | 9.96e-13 | 67.8 |
MS.gene028862.t1 | MTR_2g080010 | 29.448 | 163 | 95 | 6 | 19 | 178 | 1 | 146 | 7.04e-12 | 65.1 |
MS.gene028862.t1 | MTR_1g069805 | 28.313 | 166 | 96 | 6 | 33 | 193 | 9 | 156 | 3.70e-11 | 62.4 |
MS.gene028862.t1 | MTR_3g096920 | 33.562 | 146 | 75 | 7 | 34 | 176 | 7 | 133 | 5.34e-11 | 62.4 |
MS.gene028862.t1 | MTR_3g096920 | 33.562 | 146 | 75 | 7 | 34 | 176 | 7 | 133 | 5.36e-11 | 62.0 |
MS.gene028862.t1 | MTR_8g094580 | 32.192 | 146 | 77 | 6 | 34 | 176 | 7 | 133 | 6.29e-11 | 62.0 |
MS.gene028862.t1 | MTR_3g088110 | 32.639 | 144 | 79 | 6 | 34 | 176 | 7 | 133 | 7.27e-11 | 61.6 |
MS.gene028862.t1 | MTR_2g078700 | 30.952 | 168 | 89 | 7 | 34 | 191 | 23 | 173 | 9.49e-11 | 62.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene028862.t1 | AT4G28500 | 62.989 | 281 | 73 | 7 | 10 | 270 | 36 | 305 | 3.24e-117 | 338 |
MS.gene028862.t1 | AT1G28470 | 76.289 | 194 | 44 | 1 | 9 | 200 | 50 | 243 | 1.60e-105 | 309 |
MS.gene028862.t1 | AT4G29230 | 71.144 | 201 | 45 | 2 | 10 | 202 | 29 | 224 | 1.45e-97 | 293 |
MS.gene028862.t1 | AT4G29230 | 71.144 | 201 | 45 | 2 | 10 | 202 | 29 | 224 | 7.28e-97 | 293 |
MS.gene028862.t1 | AT4G29230 | 71.144 | 201 | 44 | 2 | 10 | 202 | 29 | 223 | 1.45e-96 | 292 |
MS.gene028862.t1 | AT5G56620 | 68.342 | 199 | 48 | 4 | 12 | 199 | 25 | 219 | 1.72e-90 | 274 |
MS.gene028862.t1 | AT5G56620 | 68.342 | 199 | 48 | 4 | 12 | 199 | 25 | 219 | 1.74e-90 | 274 |
MS.gene028862.t1 | AT5G56620 | 68.342 | 199 | 48 | 4 | 12 | 199 | 25 | 219 | 2.65e-90 | 273 |
MS.gene028862.t1 | AT1G25580 | 57.143 | 189 | 71 | 4 | 10 | 198 | 37 | 215 | 1.18e-65 | 211 |
MS.gene028862.t1 | AT5G14490 | 50.785 | 191 | 85 | 4 | 15 | 198 | 30 | 218 | 5.85e-55 | 179 |
MS.gene028862.t1 | AT5G14490 | 50.785 | 191 | 85 | 4 | 15 | 198 | 33 | 221 | 9.64e-55 | 180 |
MS.gene028862.t1 | AT5G14490 | 50.785 | 191 | 85 | 4 | 15 | 198 | 30 | 218 | 1.08e-54 | 180 |
MS.gene028862.t1 | AT5G14490 | 50.785 | 191 | 85 | 4 | 15 | 198 | 33 | 221 | 1.45e-54 | 180 |
MS.gene028862.t1 | AT3G01600 | 51.064 | 188 | 84 | 3 | 15 | 195 | 30 | 216 | 7.41e-54 | 178 |
MS.gene028862.t1 | AT3G04060 | 32.961 | 179 | 96 | 6 | 26 | 196 | 12 | 174 | 1.25e-15 | 75.9 |
MS.gene028862.t1 | AT5G18270 | 34.637 | 179 | 91 | 7 | 27 | 196 | 14 | 175 | 1.98e-15 | 75.5 |
MS.gene028862.t1 | AT5G18270 | 34.637 | 179 | 91 | 7 | 27 | 196 | 14 | 175 | 3.25e-15 | 74.7 |
MS.gene028862.t1 | AT3G18400 | 34.337 | 166 | 83 | 8 | 33 | 191 | 4 | 150 | 2.74e-14 | 72.0 |
MS.gene028862.t1 | AT3G29035 | 32.941 | 170 | 83 | 8 | 34 | 192 | 24 | 173 | 2.58e-13 | 69.3 |
MS.gene028862.t1 | AT5G07680 | 32.143 | 168 | 91 | 5 | 34 | 194 | 3 | 154 | 2.78e-13 | 68.9 |
MS.gene028862.t1 | AT5G07680 | 32.143 | 168 | 91 | 5 | 34 | 194 | 17 | 168 | 2.87e-13 | 68.9 |
MS.gene028862.t1 | AT5G39610 | 33.929 | 168 | 82 | 7 | 34 | 191 | 20 | 168 | 3.90e-13 | 68.2 |
MS.gene028862.t1 | AT5G61430 | 32.530 | 166 | 87 | 6 | 34 | 191 | 16 | 164 | 7.39e-13 | 67.8 |
MS.gene028862.t1 | AT1G01720 | 31.333 | 150 | 85 | 5 | 28 | 176 | 1 | 133 | 1.27e-12 | 67.0 |
MS.gene028862.t1 | AT1G02230 | 32.877 | 146 | 73 | 7 | 35 | 173 | 4 | 131 | 1.03e-11 | 64.7 |
MS.gene028862.t1 | AT5G08790 | 32.877 | 146 | 76 | 6 | 34 | 176 | 7 | 133 | 1.08e-11 | 64.3 |
MS.gene028862.t1 | AT4G35580 | 28.241 | 216 | 121 | 11 | 27 | 230 | 2 | 195 | 1.90e-11 | 64.3 |
MS.gene028862.t1 | AT4G35580 | 28.241 | 216 | 121 | 11 | 27 | 230 | 2 | 195 | 1.91e-11 | 64.3 |
MS.gene028862.t1 | AT4G35580 | 28.241 | 216 | 121 | 11 | 27 | 230 | 2 | 195 | 2.08e-11 | 64.3 |
MS.gene028862.t1 | AT1G76420 | 31.844 | 179 | 92 | 9 | 33 | 201 | 21 | 179 | 2.09e-11 | 63.5 |
MS.gene028862.t1 | AT1G33060 | 29.268 | 164 | 89 | 8 | 27 | 183 | 17 | 160 | 5.74e-11 | 63.2 |
MS.gene028862.t1 | AT1G33060 | 29.268 | 164 | 89 | 8 | 27 | 183 | 17 | 160 | 6.00e-11 | 62.8 |
Find 52 sgRNAs with CRISPR-Local
Find 73 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AACTTGCCACTCACGAAAAC+TGG | 0.294833 | 2.3:+9618294 | None:intergenic |
GAAAGCCAGAGAAAACAAAT+TGG | 0.314159 | 2.3:-9618221 | MS.gene028862:CDS |
AGAGGAGAAAGAAGGGGAAT+TGG | 0.315805 | 2.3:-9618166 | MS.gene028862:CDS |
TCAAGAGATTCTTGAACATT+TGG | 0.330357 | 2.3:-9618703 | MS.gene028862:CDS |
CACATTGTCTAGGCTGTGTT+TGG | 0.340883 | 2.3:+9618124 | None:intergenic |
AATTAACCTGGTAATTTCTC+TGG | 0.347710 | 2.3:+9618585 | None:intergenic |
AGAAATCACTTGAGCATTGT+TGG | 0.356347 | 2.3:+9617948 | None:intergenic |
TTCGTGAGTGGCAAGTTAAA+AGG | 0.360040 | 2.3:-9618288 | MS.gene028862:CDS |
CATTGTTTCCAAGATGGTAT+TGG | 0.379772 | 2.3:+9618190 | None:intergenic |
GAGTTGCCTGGATTACCTGC+TGG | 0.394171 | 2.3:-9618747 | MS.gene028862:CDS |
ACAATGAAGAGGAGAAAGAA+GGG | 0.411720 | 2.3:-9618173 | MS.gene028862:CDS |
GAATTCATCCCTACTCTTGA+AGG | 0.419664 | 2.3:-9618633 | MS.gene028862:CDS |
GTTAATTAATTATAGGGTGC+TGG | 0.422909 | 2.3:-9618777 | MS.gene028862:intron |
GGGATGAATTCATCAATTAA+AGG | 0.427373 | 2.3:+9618645 | None:intergenic |
GAAACAAGATGGCACAAAAC+AGG | 0.437008 | 2.3:-9618327 | MS.gene028862:CDS |
CCTCTTCATTGTTTCCAAGA+TGG | 0.442737 | 2.3:+9618184 | None:intergenic |
CTGTGTTTGGTAGAAAACTT+TGG | 0.443831 | 2.3:+9618137 | None:intergenic |
CCTACTCTTGAAGGAGAGAA+TGG | 0.452976 | 2.3:-9618624 | MS.gene028862:CDS |
AGTTGCCTGGATTACCTGCT+GGG | 0.468652 | 2.3:-9618746 | MS.gene028862:CDS |
TTCACCCCAGCAGGTAATCC+AGG | 0.471003 | 2.3:+9618741 | None:intergenic |
GCTGGAATTCATGAGTTGCC+TGG | 0.479458 | 2.3:-9618759 | MS.gene028862:CDS |
TATGCAGGTGTCGGCAAAGA+TGG | 0.479967 | 2.3:-9618441 | MS.gene028862:intron |
CCATTCTCTCCTTCAAGAGT+AGG | 0.481831 | 2.3:+9618624 | None:intergenic |
TGATCCGACATTTCTTTCAC+CGG | 0.491329 | 2.3:-9618416 | MS.gene028862:CDS |
GGATCAAACTTCACCCCAGC+AGG | 0.493343 | 2.3:+9618732 | None:intergenic |
GTTATGCACCAATACCATCT+TGG | 0.493624 | 2.3:-9618198 | MS.gene028862:CDS |
CATTCTCTCCTTCAAGAGTA+GGG | 0.494352 | 2.3:+9618625 | None:intergenic |
AACAATGAAGAGGAGAAAGA+AGG | 0.499608 | 2.3:-9618174 | MS.gene028862:CDS |
CCATCAAAAGCATACACAAC+AGG | 0.501280 | 2.3:-9618393 | MS.gene028862:CDS |
TCATATCAAATGCCAAGATC+AGG | 0.502996 | 2.3:-9619006 | MS.gene028862:intron |
AAAGCCAGAGAAAACAAATT+GGG | 0.504516 | 2.3:-9618220 | MS.gene028862:CDS |
GAATGTGAAGAACCTGATCT+TGG | 0.505797 | 2.3:+9618994 | None:intergenic |
TCAAGAATCTCTTGATCAGT+AGG | 0.542994 | 2.3:+9618711 | None:intergenic |
ATAGTATTCAACAAATCCAC+TGG | 0.553691 | 2.3:+9618014 | None:intergenic |
GAATGAAAGAAGTACCATCA+TGG | 0.572077 | 2.3:+9617914 | None:intergenic |
AAAGAAGTACCATCATGGAC+AGG | 0.572495 | 2.3:+9617919 | None:intergenic |
ACTCATCCAGAGAAATTACC+AGG | 0.579439 | 2.3:-9618591 | MS.gene028862:intron |
TTGATATGATGACCACATGT+AGG | 0.596208 | 2.3:+9619020 | None:intergenic |
AATGAACCACCACATTGTCT+AGG | 0.596526 | 2.3:+9618114 | None:intergenic |
GTGGTTAATCATAAAACCAG+TGG | 0.602289 | 2.3:-9618030 | MS.gene028862:CDS |
CAATGAAGAGGAGAAAGAAG+GGG | 0.610991 | 2.3:-9618172 | MS.gene028862:CDS |
ATGGCCGGTGAAAGAAATGT+CGG | 0.616052 | 2.3:+9618412 | None:intergenic |
AACATTTGGAAGCAAAAGTG+AGG | 0.616853 | 2.3:-9618689 | MS.gene028862:CDS |
CCATCTTGGAAACAATGAAG+AGG | 0.630946 | 2.3:-9618184 | MS.gene028862:CDS |
ATCAGAACTTGTCCTACATG+TGG | 0.643015 | 2.3:-9619032 | MS.gene028862:CDS |
AAAGTGCACACAGATGCTGA+TGG | 0.650930 | 2.3:-9618354 | MS.gene028862:CDS |
GGCACAAAACAGGTAAAACA+AGG | 0.653352 | 2.3:-9618317 | MS.gene028862:CDS |
CTGATGGAAGTGAAACAAGA+TGG | 0.659352 | 2.3:-9618338 | MS.gene028862:CDS |
CAAACACAGCCTAGACAATG+TGG | 0.666262 | 2.3:-9618123 | MS.gene028862:CDS |
TGATCAAAGTGTTCATGAAG+TGG | 0.671005 | 2.3:-9618049 | MS.gene028862:CDS |
GTTGCCTGGATTACCTGCTG+GGG | 0.708832 | 2.3:-9618745 | MS.gene028862:CDS |
ACACAGCCTAGACAATGTGG+TGG | 0.735435 | 2.3:-9618120 | MS.gene028862:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TACTAAGAATATAAATATTG+TGG | - | chr2.3:9618164-9618183 | MS.gene028862:CDS | 15.0% |
!! | TAAAACATGTATAATTAACC+TGG | + | chr2.3:9618395-9618414 | None:intergenic | 20.0% |
!!! | ATCATATTGTTATTTTTCCT+TGG | - | chr2.3:9618108-9618127 | MS.gene028862:CDS | 20.0% |
!!! | TGTGGTGTTAATTAATTATA+GGG | - | chr2.3:9618182-9618201 | MS.gene028862:CDS | 20.0% |
!!! | TTGTGGTGTTAATTAATTAT+AGG | - | chr2.3:9618181-9618200 | MS.gene028862:CDS | 20.0% |
!!! | TTTTCTGATAAAAAGCTAAA+TGG | - | chr2.3:9618893-9618912 | MS.gene028862:intron | 20.0% |
! | ACACAAAAAATGTCATACAT+AGG | + | chr2.3:9618480-9618499 | None:intergenic | 25.0% |
! | CTATGAAAGAACAAAAGAAA+TGG | + | chr2.3:9618429-9618448 | None:intergenic | 25.0% |
! | TAAAATCATTAACATCACCA+AGG | + | chr2.3:9618128-9618147 | None:intergenic | 25.0% |
!! | TCTTTCATATCTTTTGATCA+AGG | - | chr2.3:9618980-9618999 | MS.gene028862:intron | 25.0% |
!! | TTAAAGCTCTAACAAAATCA+CGG | + | chr2.3:9618044-9618063 | None:intergenic | 25.0% |
AAAGCCAGAGAAAACAAATT+GGG | - | chr2.3:9618745-9618764 | MS.gene028862:CDS | 30.0% | |
AATTAACCTGGTAATTTCTC+TGG | + | chr2.3:9618383-9618402 | None:intergenic | 30.0% | |
ATAGTATTCAACAAATCCAC+TGG | + | chr2.3:9618954-9618973 | None:intergenic | 30.0% | |
GGGATGAATTCATCAATTAA+AGG | + | chr2.3:9618323-9618342 | None:intergenic | 30.0% | |
GTTAATTAATTATAGGGTGC+TGG | - | chr2.3:9618188-9618207 | MS.gene028862:CDS | 30.0% | |
TCAAGAGATTCTTGAACATT+TGG | - | chr2.3:9618262-9618281 | MS.gene028862:CDS | 30.0% | |
! | ATATTTTACGTCTGATATGC+AGG | - | chr2.3:9618509-9618528 | MS.gene028862:intron | 30.0% |
! | ATTTTCTGTCATCGTGATTT+TGG | + | chr2.3:9618080-9618099 | None:intergenic | 30.0% |
!! | ATAACCCAATTTGTTTTCTC+TGG | + | chr2.3:9618752-9618771 | None:intergenic | 30.0% |
AACAATGAAGAGGAGAAAGA+AGG | - | chr2.3:9618791-9618810 | MS.gene028862:intron | 35.0% | |
AACATTTGGAAGCAAAAGTG+AGG | - | chr2.3:9618276-9618295 | MS.gene028862:CDS | 35.0% | |
ACAATGAAGAGGAGAAAGAA+GGG | - | chr2.3:9618792-9618811 | MS.gene028862:intron | 35.0% | |
CATTGTTTCCAAGATGGTAT+TGG | + | chr2.3:9618778-9618797 | None:intergenic | 35.0% | |
CTGTGTTTGGTAGAAAACTT+TGG | + | chr2.3:9618831-9618850 | None:intergenic | 35.0% | |
GAAAGCCAGAGAAAACAAAT+TGG | - | chr2.3:9618744-9618763 | MS.gene028862:CDS | 35.0% | |
GTGGTTAATCATAAAACCAG+TGG | - | chr2.3:9618935-9618954 | MS.gene028862:intron | 35.0% | |
TCAAGAATCTCTTGATCAGT+AGG | + | chr2.3:9618257-9618276 | None:intergenic | 35.0% | |
TCATATCAAATGCCAAGATC+AGG | - | chr2.3:9617959-9617978 | MS.gene028862:CDS | 35.0% | |
TTGATATGATGACCACATGT+AGG | + | chr2.3:9617948-9617967 | None:intergenic | 35.0% | |
! | AGAAATCACTTGAGCATTGT+TGG | + | chr2.3:9619020-9619039 | None:intergenic | 35.0% |
! | TGATCAAAGTGTTCATGAAG+TGG | - | chr2.3:9618916-9618935 | MS.gene028862:intron | 35.0% |
!! | GAATGAAAGAAGTACCATCA+TGG | + | chr2.3:9619054-9619073 | None:intergenic | 35.0% |
AATGAACCACCACATTGTCT+AGG | + | chr2.3:9618854-9618873 | None:intergenic | 40.0% | |
ACTCATCCAGAGAAATTACC+AGG | - | chr2.3:9618374-9618393 | MS.gene028862:CDS | 40.0% | |
ATCAGAACTTGTCCTACATG+TGG | - | chr2.3:9617933-9617952 | MS.gene028862:CDS | 40.0% | |
CAATGAAGAGGAGAAAGAAG+GGG | - | chr2.3:9618793-9618812 | MS.gene028862:intron | 40.0% | |
CATTCTCTCCTTCAAGAGTA+GGG | + | chr2.3:9618343-9618362 | None:intergenic | 40.0% | |
CCATCTTGGAAACAATGAAG+AGG | - | chr2.3:9618781-9618800 | MS.gene028862:intron | 40.0% | |
CCTCTTCATTGTTTCCAAGA+TGG | + | chr2.3:9618784-9618803 | None:intergenic | 40.0% | |
CTCTAACAAAATCACGGTGT+CGG | + | chr2.3:9618038-9618057 | None:intergenic | 40.0% | |
CTGATGGAAGTGAAACAAGA+TGG | - | chr2.3:9618627-9618646 | MS.gene028862:CDS | 40.0% | |
GAAACAAGATGGCACAAAAC+AGG | - | chr2.3:9618638-9618657 | MS.gene028862:CDS | 40.0% | |
GAATGTGAAGAACCTGATCT+TGG | + | chr2.3:9617974-9617993 | None:intergenic | 40.0% | |
GAATTCATCCCTACTCTTGA+AGG | - | chr2.3:9618332-9618351 | MS.gene028862:CDS | 40.0% | |
GGCACAAAACAGGTAAAACA+AGG | - | chr2.3:9618648-9618667 | MS.gene028862:CDS | 40.0% | |
GTTATGCACCAATACCATCT+TGG | - | chr2.3:9618767-9618786 | MS.gene028862:intron | 40.0% | |
GTTCTTCACATTCGTGCATA+TGG | - | chr2.3:9617981-9618000 | MS.gene028862:CDS | 40.0% | |
TGATCCGACATTTCTTTCAC+CGG | - | chr2.3:9618549-9618568 | MS.gene028862:intron | 40.0% | |
TTCGTGAGTGGCAAGTTAAA+AGG | - | chr2.3:9618677-9618696 | MS.gene028862:CDS | 40.0% | |
! | CCATCAAAAGCATACACAAC+AGG | - | chr2.3:9618572-9618591 | MS.gene028862:intron | 40.0% |
! | CCTGTTGTGTATGCTTTTGA+TGG | + | chr2.3:9618575-9618594 | None:intergenic | 40.0% |
! | TCTCATTTTCCTGTCCATGA+TGG | - | chr2.3:9619037-9619056 | MS.gene028862:CDS | 40.0% |
!! | AAAGAAGTACCATCATGGAC+AGG | + | chr2.3:9619049-9619068 | None:intergenic | 40.0% |
!! | TTGTGTATGCTTTTGATGGC+CGG | + | chr2.3:9618571-9618590 | None:intergenic | 40.0% |
AAAGTGCACACAGATGCTGA+TGG | - | chr2.3:9618611-9618630 | MS.gene028862:CDS | 45.0% | |
AACTTGCCACTCACGAAAAC+TGG | + | chr2.3:9618674-9618693 | None:intergenic | 45.0% | |
AGAGGAGAAAGAAGGGGAAT+TGG | - | chr2.3:9618799-9618818 | MS.gene028862:intron | 45.0% | |
ATGGCCGGTGAAAGAAATGT+CGG | + | chr2.3:9618556-9618575 | None:intergenic | 45.0% | |
CAAACACAGCCTAGACAATG+TGG | - | chr2.3:9618842-9618861 | MS.gene028862:intron | 45.0% | |
CACATTGTCTAGGCTGTGTT+TGG | + | chr2.3:9618844-9618863 | None:intergenic | 45.0% | |
CCATTCTCTCCTTCAAGAGT+AGG | + | chr2.3:9618344-9618363 | None:intergenic | 45.0% | |
CCTACTCTTGAAGGAGAGAA+TGG | - | chr2.3:9618341-9618360 | MS.gene028862:CDS | 45.0% | |
TACGTCTGATATGCAGGTGT+CGG | - | chr2.3:9618515-9618534 | MS.gene028862:intron | 45.0% | |
ACACAGCCTAGACAATGTGG+TGG | - | chr2.3:9618845-9618864 | MS.gene028862:intron | 50.0% | |
AGTTGCCTGGATTACCTGCT+GGG | - | chr2.3:9618219-9618238 | MS.gene028862:CDS | 50.0% | |
GCTGGAATTCATGAGTTGCC+TGG | - | chr2.3:9618206-9618225 | MS.gene028862:CDS | 50.0% | |
! | ACAAGGCCAGTTTTCGTGAG+TGG | - | chr2.3:9618665-9618684 | MS.gene028862:CDS | 50.0% |
!! | TATGCAGGTGTCGGCAAAGA+TGG | - | chr2.3:9618524-9618543 | MS.gene028862:intron | 50.0% |
GAGTTGCCTGGATTACCTGC+TGG | - | chr2.3:9618218-9618237 | MS.gene028862:CDS | 55.0% | |
GGATCAAACTTCACCCCAGC+AGG | + | chr2.3:9618236-9618255 | None:intergenic | 55.0% | |
GTTGCCTGGATTACCTGCTG+GGG | - | chr2.3:9618220-9618239 | MS.gene028862:CDS | 55.0% | |
TTCACCCCAGCAGGTAATCC+AGG | + | chr2.3:9618227-9618246 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.3 | gene | 9617909 | 9619078 | 9617909 | ID=MS.gene028862 |
chr2.3 | mRNA | 9617909 | 9619078 | 9617909 | ID=MS.gene028862.t1;Parent=MS.gene028862 |
chr2.3 | exon | 9619007 | 9619078 | 9619007 | ID=MS.gene028862.t1.exon1;Parent=MS.gene028862.t1 |
chr2.3 | CDS | 9619007 | 9619078 | 9619007 | ID=cds.MS.gene028862.t1;Parent=MS.gene028862.t1 |
chr2.3 | exon | 9618592 | 9618784 | 9618592 | ID=MS.gene028862.t1.exon2;Parent=MS.gene028862.t1 |
chr2.3 | CDS | 9618592 | 9618784 | 9618592 | ID=cds.MS.gene028862.t1;Parent=MS.gene028862.t1 |
chr2.3 | exon | 9617909 | 9618456 | 9617909 | ID=MS.gene028862.t1.exon3;Parent=MS.gene028862.t1 |
chr2.3 | CDS | 9617909 | 9618456 | 9617909 | ID=cds.MS.gene028862.t1;Parent=MS.gene028862.t1 |
Gene Sequence |
Protein sequence |