AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene028866

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene028866.t1 MTR_2g090675 98.585 424 5 1 1 423 1 424 0.0 857
MS.gene028866.t1 MTR_4g078810 60.899 445 126 18 1 421 1 421 7.02e-149 429
MS.gene028866.t1 MTR_5g014040 36.194 268 126 8 154 416 305 532 2.16e-41 154
MS.gene028866.t1 MTR_4g098870 32.479 351 180 15 91 421 235 548 5.45e-41 153
MS.gene028866.t1 MTR_4g098870 32.479 351 180 15 91 421 274 587 5.54e-41 154
MS.gene028866.t1 MTR_4g098870 32.479 351 180 15 91 421 255 568 7.04e-41 153
MS.gene028866.t1 MTR_5g014040 35.531 273 126 9 154 416 305 537 3.57e-39 148
MS.gene028866.t1 MTR_5g014040 35.531 273 126 9 154 416 265 497 5.04e-39 147
MS.gene028866.t1 MTR_4g098870 33.482 224 119 11 91 298 255 464 6.21e-27 113
MS.gene028866.t1 MTR_4g098870 33.482 224 119 11 91 298 235 444 6.73e-27 113
MS.gene028866.t1 MTR_3g106220 50.000 74 37 0 154 227 192 265 2.28e-17 84.7
MS.gene028866.t1 MTR_2g450070 37.190 121 72 2 155 274 208 325 5.77e-17 83.6
MS.gene028866.t1 MTR_2g450070 37.190 121 72 2 155 274 208 325 7.06e-17 83.2
MS.gene028866.t1 MTR_7g117705 34.146 164 94 7 155 309 186 344 9.29e-17 82.4
MS.gene028866.t1 MTR_1g032570 56.061 66 29 0 153 218 124 189 2.50e-16 81.3
MS.gene028866.t1 MTR_1g032570 56.061 66 29 0 153 218 193 258 2.88e-16 81.3
MS.gene028866.t1 MTR_4g121020 58.333 60 25 0 159 218 110 169 3.52e-16 80.9
MS.gene028866.t1 MTR_4g121020 45.977 87 45 1 159 243 214 300 3.97e-16 80.9
MS.gene028866.t1 MTR_4g121020 45.977 87 45 1 159 243 214 300 4.12e-16 80.9
MS.gene028866.t1 MTR_4g021760 39.362 94 54 2 124 216 134 225 1.47e-15 77.4
MS.gene028866.t1 MTR_1g013170 53.030 66 31 0 157 222 188 253 1.70e-15 78.6
MS.gene028866.t1 MTR_7g026400 48.193 83 42 1 149 231 146 227 3.28e-15 78.2
MS.gene028866.t1 MTR_7g089010 51.667 60 29 0 159 218 90 149 6.20e-15 75.5
MS.gene028866.t1 MTR_4g021790 43.678 87 44 1 130 216 143 224 3.04e-14 73.2
MS.gene028866.t1 MTR_3g102600 51.852 54 26 0 165 218 88 141 3.05e-14 71.2
MS.gene028866.t1 MTR_4g064730 43.038 79 43 1 159 237 130 206 4.28e-14 73.2
MS.gene028866.t1 MTR_2g034960 53.333 60 28 0 159 218 210 269 5.15e-14 74.3
MS.gene028866.t1 MTR_3g102600 51.852 54 26 0 165 218 137 190 5.29e-14 71.6
MS.gene028866.t1 MTR_1g013180 53.333 60 28 0 157 216 339 398 5.67e-14 74.3
MS.gene028866.t1 MTR_8g079940 46.377 69 37 0 159 227 208 276 1.33e-13 72.8
MS.gene028866.t1 MTR_3g102590 51.786 56 27 0 157 212 140 195 2.16e-13 70.1
MS.gene028866.t1 MTR_4g131600 33.333 153 62 5 106 218 107 259 5.57e-13 71.2
MS.gene028866.t1 MTR_3g086100 43.662 71 40 0 159 229 127 197 9.14e-13 70.1
MS.gene028866.t1 MTR_4g131580 34.247 146 81 5 109 242 139 281 9.60e-13 70.5
MS.gene028866.t1 MTR_4g021855 42.222 90 49 2 128 216 137 224 1.07e-12 68.9
MS.gene028866.t1 MTR_4g131570 50.909 55 27 0 158 212 201 255 1.09e-12 70.1
MS.gene028866.t1 MTR_4g086835 50.000 60 30 0 159 218 273 332 1.27e-12 69.3
MS.gene028866.t1 MTR_3g102600 51.064 47 23 0 165 211 88 134 1.33e-12 65.5
MS.gene028866.t1 MTR_3g086100 43.662 71 40 0 159 229 198 268 1.45e-12 69.7
MS.gene028866.t1 MTR_3g102600 51.064 47 23 0 165 211 137 183 4.77e-12 65.1
MS.gene028866.t1 MTR_6g032990 54.545 55 24 1 162 215 44 98 5.76e-12 67.4
MS.gene028866.t1 MTR_1g093080 50.000 60 29 1 158 216 209 268 9.29e-12 66.6
MS.gene028866.t1 MTR_4g021845 38.554 83 48 2 128 209 137 217 1.05e-11 64.7
MS.gene028866.t1 MTR_0450s0040 45.205 73 39 1 159 231 168 239 1.22e-11 65.9
MS.gene028866.t1 MTR_5g054300 35.922 103 58 2 122 216 153 255 1.43e-11 65.9
MS.gene028866.t1 MTR_2g086450 53.846 52 23 1 162 212 47 98 2.89e-11 65.1
MS.gene028866.t1 MTR_4g086835 49.180 61 30 1 159 218 273 333 4.05e-11 64.7
MS.gene028866.t1 MTR_5g017980 53.571 56 26 0 159 214 192 247 5.20e-11 63.9
MS.gene028866.t1 MTR_5g017980 53.571 56 26 0 159 214 191 246 5.26e-11 63.9
MS.gene028866.t1 MTR_3g102590 49.057 53 27 0 157 209 140 192 5.43e-11 62.0
MS.gene028866.t1 MTR_2g027860 53.704 54 24 1 160 212 49 102 7.25e-11 63.5
MS.gene028866.t1 MTR_5g041350 53.846 52 23 1 162 212 17 68 8.31e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene028866.t1 AT2G20570 48.985 394 143 14 56 423 59 420 4.51e-93 287
MS.gene028866.t1 AT2G20570 47.073 410 143 15 56 423 59 436 7.48e-89 276
MS.gene028866.t1 AT5G44190 42.754 414 147 16 28 420 40 384 7.60e-74 236
MS.gene028866.t1 AT5G44190 41.796 323 113 13 28 329 40 308 6.49e-59 196
MS.gene028866.t1 AT2G20570 38.579 394 137 15 56 423 59 373 1.61e-49 172
MS.gene028866.t1 AT4G18020 32.812 384 194 12 60 421 183 524 1.10e-34 135
MS.gene028866.t1 AT4G18020 32.812 384 194 12 60 421 183 524 1.10e-34 135
MS.gene028866.t1 AT4G18020 32.812 384 194 12 60 421 183 524 1.10e-34 135
MS.gene028866.t1 AT4G18020 32.812 384 194 12 60 421 183 524 1.10e-34 135
MS.gene028866.t1 AT4G18020 32.812 384 194 12 60 421 183 524 1.10e-34 135
MS.gene028866.t1 AT4G18020 31.498 327 170 11 60 364 183 477 1.10e-30 123
MS.gene028866.t1 AT4G18020 31.498 327 170 11 60 364 183 477 1.10e-30 123
MS.gene028866.t1 AT4G18020 31.498 327 170 11 60 364 183 477 1.10e-30 123
MS.gene028866.t1 AT4G18020 31.498 327 170 11 60 364 183 477 1.10e-30 123
MS.gene028866.t1 AT4G18020 31.498 327 170 11 60 364 183 477 1.10e-30 123
MS.gene028866.t1 AT4G18020 31.498 327 170 11 60 364 183 477 1.10e-30 123
MS.gene028866.t1 AT5G59570 35.333 150 82 3 100 235 68 216 1.06e-18 86.7
MS.gene028866.t1 AT5G59570 35.333 150 82 3 100 235 68 216 1.06e-18 86.7
MS.gene028866.t1 AT5G58080 52.113 71 34 0 148 218 182 252 8.23e-17 83.2
MS.gene028866.t1 AT2G01760 54.688 64 29 0 155 218 130 193 7.61e-16 78.6
MS.gene028866.t1 AT4G31920 40.426 94 53 1 153 243 176 269 8.82e-16 79.7
MS.gene028866.t1 AT3G16857 46.250 80 43 0 139 218 146 225 1.08e-15 79.7
MS.gene028866.t1 AT3G16857 46.250 80 43 0 139 218 216 295 1.15e-15 79.7
MS.gene028866.t1 AT3G16857 46.250 80 43 0 139 218 216 295 1.41e-15 79.3
MS.gene028866.t1 AT2G01760 54.688 64 29 0 155 218 195 258 1.45e-15 78.2
MS.gene028866.t1 AT2G01760 54.688 64 29 0 155 218 223 286 1.68e-15 78.2
MS.gene028866.t1 AT3G10760 51.667 60 29 0 159 218 104 163 1.91e-15 77.4
MS.gene028866.t1 AT5G05090 51.667 60 29 0 159 218 80 139 2.37e-15 76.3
MS.gene028866.t1 AT2G25180 41.860 86 50 0 158 243 193 278 3.44e-15 78.2
MS.gene028866.t1 AT3G46640 32.258 155 83 4 84 231 76 215 4.71e-15 76.3
MS.gene028866.t1 AT3G46640 32.258 155 83 4 84 231 76 215 4.71e-15 76.3
MS.gene028866.t1 AT3G46640 32.258 155 83 4 84 231 76 215 1.24e-14 75.1
MS.gene028866.t1 AT5G07210 49.296 71 32 1 159 229 221 287 4.72e-14 74.7
MS.gene028866.t1 AT2G40970 50.877 57 28 0 162 218 107 163 4.91e-14 72.0
MS.gene028866.t1 AT5G07210 49.296 71 32 1 159 229 229 295 5.02e-14 74.3
MS.gene028866.t1 AT1G68670 36.508 126 68 4 137 260 193 308 1.32e-12 68.9
MS.gene028866.t1 AT1G13300 39.796 98 55 3 120 216 144 238 2.22e-12 68.2
MS.gene028866.t1 AT4G28610 46.377 69 36 1 148 215 213 281 3.49e-12 68.2
MS.gene028866.t1 AT2G03500 47.887 71 32 2 147 216 224 290 5.25e-12 67.8
MS.gene028866.t1 AT3G04030 55.556 54 23 1 160 212 45 98 5.98e-12 67.4
MS.gene028866.t1 AT2G27070 49.180 61 31 0 159 219 224 284 6.14e-12 67.8
MS.gene028866.t1 AT3G04030 55.769 52 22 1 162 212 47 98 6.82e-12 67.0
MS.gene028866.t1 AT5G18240 57.407 54 22 1 160 212 45 98 8.01e-12 67.0
MS.gene028866.t1 AT5G18240 57.407 54 22 1 160 212 45 98 8.01e-12 67.0
MS.gene028866.t1 AT5G18240 57.407 54 22 1 160 212 45 98 8.43e-12 67.0
MS.gene028866.t1 AT3G62670 42.353 85 44 2 137 216 188 272 8.97e-12 67.0
MS.gene028866.t1 AT5G18240 57.407 54 22 1 160 212 45 98 9.05e-12 67.0
MS.gene028866.t1 AT5G18240 57.407 54 22 1 160 212 45 98 9.05e-12 67.0
MS.gene028866.t1 AT1G25550 44.118 68 37 1 150 216 199 266 2.36e-11 65.1
MS.gene028866.t1 AT1G67710 53.448 58 26 1 162 218 121 178 3.06e-11 65.5
MS.gene028866.t1 AT1G67710 53.448 58 26 1 162 218 130 187 3.10e-11 65.5
MS.gene028866.t1 AT2G01060 49.180 61 29 2 153 212 9 68 3.88e-11 63.9
MS.gene028866.t1 AT1G67710 53.448 58 26 1 162 218 195 252 4.08e-11 65.1
MS.gene028866.t1 AT3G04030 50.943 53 26 0 160 212 45 97 9.17e-11 63.5

Find 141 sgRNAs with CRISPR-Local

Find 246 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCTGTACCTTCAAGAATTT+TGG 0.101691 2.3:+9673671 MS.gene028866:CDS
ACGAATCTTCTGTGTAATTC+TGG 0.180500 2.3:-9673618 None:intergenic
TCTTTCTGAAGGGAACTTAT+TGG 0.187055 2.3:+9672276 MS.gene028866:CDS
CTTCAAGTGCTGGAGCTTTA+AGG 0.188281 2.3:-9675979 None:intergenic
CTCACCAGCCACCGGCTAAC+TGG 0.194568 2.3:+9674302 MS.gene028866:CDS
GCACAAGAGGGTGGAATATT+TGG 0.198256 2.3:-9676034 None:intergenic
GTAGTTTCTTCTTCAGATTC+TGG 0.217213 2.3:+9672511 MS.gene028866:CDS
GAGAATTCAGCAAGCATTTC+CGG 0.225150 2.3:-9672379 None:intergenic
CGACAACACCGGGATCTAAT+TGG 0.291081 2.3:-9675380 None:intergenic
AATTCTCCTCCATTTCTCTT+TGG 0.309622 2.3:-9672225 None:intergenic
GTTCCTGCAGTTGGTGCATT+TGG 0.315113 2.3:-9675062 None:intergenic
AAAGAGATATTGTGAATCAT+TGG 0.319597 2.3:+9674161 MS.gene028866:CDS
ATACATGTAAAGGTCTAAAA+TGG 0.320147 2.3:-9674225 None:intergenic
CCAAGAGGCAATGGTAAATA+TGG 0.325980 2.3:-9675956 None:intergenic
ATCTTGTAATGATGGGAATA+TGG 0.342028 2.3:+9672453 MS.gene028866:CDS
ATTTGGCTCTCCAACCGTTC+CGG 0.346150 2.3:+9675332 MS.gene028866:CDS
CTTCCTTTCTCACCTTCCTT+AGG 0.364182 2.3:-9672595 None:intergenic
TTTGGCTCTCCAACCGTTCC+GGG 0.371933 2.3:+9675333 MS.gene028866:CDS
TACTATAAAATGCAGAGATT+TGG 0.372430 2.3:+9675315 MS.gene028866:intron
CGAATCTTCTGTGTAATTCT+GGG 0.380572 2.3:-9673617 None:intergenic
GGCTGGTGAGGCGAATATTT+AGG 0.392643 2.3:-9674289 None:intergenic
CGCGCAGGTGCCCAGTTAGC+CGG 0.396067 2.3:-9674313 None:intergenic
AATAGCAAATCTTGTAATGA+TGG 0.402167 2.3:+9672445 MS.gene028866:CDS
GCATGGGGTGGTGGAATGCC+CGG 0.416738 2.3:-9675351 None:intergenic
GGAGGTGGAGCCGGCCGCGC+AGG 0.417257 2.3:-9674328 None:intergenic
TTCTCACCTTCCTTAGGCAA+TGG 0.418890 2.3:-9672589 None:intergenic
ATAATTTCCAAAATTCTTGA+AGG 0.422640 2.3:-9673678 None:intergenic
TGGTACATGGCATGGGGTGG+TGG 0.423225 2.3:-9675360 None:intergenic
CCAGCACTTGAAGGTGTAAT+GGG 0.424238 2.3:+9675989 MS.gene028866:CDS
TTTGGAACAAATAGAGGAGT+TGG 0.424569 2.3:+9674133 MS.gene028866:CDS
AGATGAAAGCCAAAGAGAAA+TGG 0.427037 2.3:+9672216 MS.gene028866:CDS
CCTCAGCAGCGGTGAGGAAT+CGG 0.431327 2.3:+9672402 MS.gene028866:CDS
AGAATTCAGCAAGCATTTCC+GGG 0.434761 2.3:-9672378 None:intergenic
TGAGGAGATGGTTGACCGGC+GGG 0.442250 2.3:-9675405 None:intergenic
CCATATTTACCATTGCCTCT+TGG 0.445286 2.3:+9675956 MS.gene028866:CDS
AGTCAAAGGAGGCAATTGTT+TGG 0.445411 2.3:+9674115 MS.gene028866:CDS
AAGAGATATTGTGAATCATT+GGG 0.445666 2.3:+9674162 MS.gene028866:CDS
CCTTCCTTAGGCAATGGATT+CGG 0.447175 2.3:-9672583 None:intergenic
TCCAGCACTTGAAGGTGTAA+TGG 0.450202 2.3:+9675988 MS.gene028866:CDS
TAACTGGGCACCTGCGCGGC+CGG 0.450504 2.3:+9674318 MS.gene028866:CDS
GAAGGTGGCTGGCGATGTTA+TGG 0.452271 2.3:-9673722 None:intergenic
AGAGCAGCTAGGTGTGGATA+AGG 0.452338 2.3:+9673650 MS.gene028866:CDS
CAATTGTTTGGAACAAATAG+AGG 0.452627 2.3:+9674127 MS.gene028866:CDS
ATCTAATTGGTACATGGCAT+GGG 0.454562 2.3:-9675367 None:intergenic
GTGCCCAGTTAGCCGGTGGC+TGG 0.461785 2.3:-9674306 None:intergenic
CCCATTACACCTTCAAGTGC+TGG 0.466502 2.3:-9675989 None:intergenic
CTTAAAGCTCCAGCACTTGA+AGG 0.470221 2.3:+9675980 MS.gene028866:CDS
CAACGACGGAGATGTGTTAC+CGG 0.474780 2.3:+9672342 MS.gene028866:CDS
ACCGTTGTTGTCAGAGGCTG+TGG 0.475841 2.3:-9675095 None:intergenic
GTTGTGTGAATTAGGTGGAT+TGG 0.480791 2.3:+9673592 MS.gene028866:intron
AAGCAGCAAGCTGGAGTCAA+AGG 0.486273 2.3:+9674101 MS.gene028866:CDS
TCTAAGAGAGGCTGAGGAGA+TGG 0.487017 2.3:-9675417 None:intergenic
GGTGGAATGCCCGGAACGGT+TGG 0.487870 2.3:-9675342 None:intergenic
CGCTTCGTATTGGCATCAAC+GGG 0.494965 2.3:+9674354 MS.gene028866:CDS
TCACCAGCCACCGGCTAACT+GGG 0.495747 2.3:+9674303 MS.gene028866:CDS
TCCGGGTCCATCTCAAGATC+CGG 0.498896 2.3:-9672361 None:intergenic
TGGCGATGTTATGGCGGGTG+AGG 0.501153 2.3:-9673713 None:intergenic
GAATCGGATATAAATTCATC+AGG 0.503029 2.3:+9672418 MS.gene028866:CDS
TGCATAAACGACTGATCCAC+GGG 0.503874 2.3:-9674259 None:intergenic
TCATCTCTTATGCTACTCAA+TGG 0.503989 2.3:-9672199 None:intergenic
AATATATACTTGAAGGTGGC+TGG 0.504816 2.3:-9673733 None:intergenic
GTGAAGCTGAAGCAGCAAGC+TGG 0.505371 2.3:+9674092 MS.gene028866:CDS
CATTGGGTTGCACCAACCAT+GGG 0.506502 2.3:+9674178 MS.gene028866:CDS
GACTTTGCTGATCTTTCTGA+AGG 0.507511 2.3:+9672265 MS.gene028866:CDS
TGGTGTACTGGTGGCATGGG+AGG 0.508769 2.3:-9674205 None:intergenic
CCCGGTGTTGTCGTCCCCGC+CGG 0.509158 2.3:+9675390 MS.gene028866:CDS
CCGGCGGGGACGACAACACC+GGG 0.512001 2.3:-9675390 None:intergenic
TGGAAGTCTAAGAGAGGCTG+AGG 0.512815 2.3:-9675423 None:intergenic
CAATCAAAGAATAACCCTCA+TGG 0.515207 2.3:+9672631 MS.gene028866:CDS
TTGCCTAAGGAAGGTGAGAA+AGG 0.515531 2.3:+9672592 MS.gene028866:CDS
TGATGCCAATACGAAGCGTT+AGG 0.516711 2.3:-9674349 None:intergenic
CTCTCCTGTTCAAGCACAAG+AGG 0.517323 2.3:-9676047 None:intergenic
CGATTCCTCACCGCTGCTGA+GGG 0.520384 2.3:-9672401 None:intergenic
CAGTTAGCCGGTGGCTGGTG+AGG 0.522621 2.3:-9674301 None:intergenic
CACCTCCTAACGCTTCGTAT+TGG 0.524846 2.3:+9674344 MS.gene028866:CDS
AGATTCTGGTTCGAGTCGTG+TGG 0.530001 2.3:+9672525 MS.gene028866:CDS
AGGCTGAGGAGATGGTTGAC+CGG 0.530628 2.3:-9675409 None:intergenic
TCATTGGGTTGCACCAACCA+TGG 0.531353 2.3:+9674177 MS.gene028866:CDS
GATCTAATTGGTACATGGCA+TGG 0.535864 2.3:-9675368 None:intergenic
GGAACAAATAGAGGAGTTGG+AGG 0.536832 2.3:+9674136 MS.gene028866:CDS
ATAGCAAATCTTGTAATGAT+GGG 0.538050 2.3:+9672446 MS.gene028866:CDS
GAAGCGTTAGGAGGTGGAGC+CGG 0.546304 2.3:-9674337 None:intergenic
TTCTTCGTATGCTTCAACGA+CGG 0.547987 2.3:+9672328 MS.gene028866:CDS
GTGGCTGGCGATGTTATGGC+GGG 0.549108 2.3:-9673718 None:intergenic
ATGGGAGGGAAACCCATGGT+TGG 0.554944 2.3:-9674190 None:intergenic
ACCGGCGGGGACGACAACAC+CGG 0.556465 2.3:-9675391 None:intergenic
AAAGGTCTAAAATGGTGTAC+TGG 0.559020 2.3:-9674217 None:intergenic
AAATGGTGTACTGGTGGCAT+GGG 0.560870 2.3:-9674208 None:intergenic
GCTTTAAGGCCAAGAGGCAA+TGG 0.562818 2.3:-9675965 None:intergenic
AATCAAAGAATAACCCTCAT+GGG 0.562864 2.3:+9672632 MS.gene028866:CDS
CAATACGAAGCGTTAGGAGG+TGG 0.565122 2.3:-9674343 None:intergenic
GGTGGCTGGCGATGTTATGG+CGG 0.567885 2.3:-9673719 None:intergenic
CTGAGGAGATGGTTGACCGG+CGG 0.568454 2.3:-9675406 None:intergenic
GGTGTACTGGTGGCATGGGA+GGG 0.568499 2.3:-9674204 None:intergenic
GCTCCAAATGCACCAACTGC+AGG 0.571552 2.3:+9675059 MS.gene028866:CDS
CCGATTCCTCACCGCTGCTG+AGG 0.572056 2.3:-9672402 None:intergenic
TTTAGACCTTTACATGTATG+GGG 0.574340 2.3:+9674229 MS.gene028866:CDS
AAGCATGGTGTTCCTGCAGT+TGG 0.575770 2.3:-9675071 None:intergenic
ATGCATAAACGACTGATCCA+CGG 0.576558 2.3:-9674260 None:intergenic
GGGTGGTGGAATGCCCGGAA+CGG 0.578855 2.3:-9675346 None:intergenic
ACGCTTCGTATTGGCATCAA+CGG 0.582704 2.3:+9674353 MS.gene028866:CDS
ACCGGGATCTAATTGGTACA+TGG 0.582780 2.3:-9675373 None:intergenic
GCCATGTACCAATTAGATCC+CGG 0.583653 2.3:+9675372 MS.gene028866:CDS
AAAATGGTGTACTGGTGGCA+TGG 0.584070 2.3:-9674209 None:intergenic
CCGAATCCATTGCCTAAGGA+AGG 0.586652 2.3:+9672583 MS.gene028866:CDS
ATCAGTCGTTTATGCATATG+TGG 0.587048 2.3:+9674266 MS.gene028866:CDS
ACTTTGCTGATCTTTCTGAA+GGG 0.589658 2.3:+9672266 MS.gene028866:CDS
GTCAGAGGCTGTGGAAAGCA+TGG 0.590043 2.3:-9675086 None:intergenic
TGAAAGCCAAAGAGAAATGG+AGG 0.591450 2.3:+9672219 MS.gene028866:CDS
TGTGTTACCGGATCTTGAGA+TGG 0.596115 2.3:+9672354 MS.gene028866:CDS
AGCAGTAGAGCAGCTAGGTG+TGG 0.596354 2.3:+9673644 MS.gene028866:CDS
GGTCTAAAATGGTGTACTGG+TGG 0.597835 2.3:-9674214 None:intergenic
CCTGTTCAAGCACAAGAGGG+TGG 0.600264 2.3:-9676043 None:intergenic
ATAGTTACCGTTGTTGTCAG+AGG 0.601295 2.3:-9675101 None:intergenic
GCCTCTCTTAGACTTCCATC+CGG 0.604166 2.3:+9675428 MS.gene028866:CDS
AATTGGTACATGGCATGGGG+TGG 0.606215 2.3:-9675363 None:intergenic
TGTGCCGAATCCATTGCCTA+AGG 0.612555 2.3:+9672579 MS.gene028866:CDS
TGCCAATACGAAGCGTTAGG+AGG 0.617509 2.3:-9674346 None:intergenic
ATATTCGCCTCACCAGCCAC+CGG 0.619018 2.3:+9674294 MS.gene028866:CDS
GCTGAATTCTCCCTCAGCAG+CGG 0.622418 2.3:+9672391 MS.gene028866:CDS
TCTCCTGTTCAAGCACAAGA+GGG 0.631508 2.3:-9676046 None:intergenic
GAATCTTCTGTGTAATTCTG+GGG 0.631835 2.3:-9673616 None:intergenic
GCAGGTGCCCAGTTAGCCGG+TGG 0.633297 2.3:-9674310 None:intergenic
CAGCAAGCTGGAGTCAAAGG+AGG 0.634073 2.3:+9674104 MS.gene028866:CDS
TCATGGGAAGAGAAAAGTGA+AGG 0.641795 2.3:+9672648 MS.gene028866:CDS
TGGCATGGGAGGGAAACCCA+TGG 0.641923 2.3:-9674194 None:intergenic
ATGGGTGAATTACAGAAACA+AGG 0.642979 2.3:+9676007 MS.gene028866:CDS
ACCGGATCTTGAGATGGACC+CGG 0.646579 2.3:+9672360 MS.gene028866:CDS
TCTAATTGGTACATGGCATG+GGG 0.646732 2.3:-9675366 None:intergenic
TTAGACCTTTACATGTATGG+GGG 0.649002 2.3:+9674230 MS.gene028866:CDS
AATGAATATATACTTGAAGG+TGG 0.660387 2.3:-9673737 None:intergenic
ATTCTCCCTCAGCAGCGGTG+AGG 0.665828 2.3:+9672396 MS.gene028866:CDS
TAAACGACTGATCCACGGGA+TGG 0.666201 2.3:-9674255 None:intergenic
TGCAGAAATATAGATCGCAT+AGG 0.669423 2.3:+9674053 MS.gene028866:intron
CGGCTAACTGGGCACCTGCG+CGG 0.670548 2.3:+9674314 MS.gene028866:CDS
ACCGGATGGAAGTCTAAGAG+AGG 0.673915 2.3:-9675429 None:intergenic
GTACAAGCAGTAGAGCAGCT+AGG 0.685057 2.3:+9673639 MS.gene028866:CDS
AGGCAATGGATTCGGCACAA+CGG 0.686412 2.3:-9672575 None:intergenic
GCTGGAGCTTTAAGGCCAAG+AGG 0.694599 2.3:-9675971 None:intergenic
GAGGAGATGGTTGACCGGCG+GGG 0.701590 2.3:-9675404 None:intergenic
TCCACAGCCTCTGACAACAA+CGG 0.702383 2.3:+9675094 MS.gene028866:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGAAAAGAAAAAAAAATTAA+GGG - chr2.3:9672734-9672753 None:intergenic 10.0%
!! TTGAAAAGAAAAAAAAATTA+AGG - chr2.3:9672735-9672754 None:intergenic 10.0%
!!! TATATAATTGCTATTTAATT+TGG + chr2.3:9672683-9672702 MS.gene028866:intron 10.0%
!! TAAAAGAAAAGAAAAATTAC+CGG - chr2.3:9675450-9675469 None:intergenic 15.0%
!! TAGACAAATAAAATGAAATA+GGG - chr2.3:9675013-9675032 None:intergenic 15.0%
!! TATAATAAACAATCAACAAA+GGG - chr2.3:9672762-9672781 None:intergenic 15.0%
!! TTAACTTATTCATATTATTG+AGG + chr2.3:9675277-9675296 MS.gene028866:intron 15.0%
!! TTAGACAAATAAAATGAAAT+AGG - chr2.3:9675014-9675033 None:intergenic 15.0%
!! TTATAATAAACAATCAACAA+AGG - chr2.3:9672763-9672782 None:intergenic 15.0%
!! ACGAAAAACAACAAAATAAA+AGG - chr2.3:9675772-9675791 None:intergenic 20.0%
!! AGATTAAACAATCAATTTCA+GGG - chr2.3:9673216-9673235 None:intergenic 20.0%
!! ATAAAATGAAATAGGGAATT+AGG - chr2.3:9675006-9675025 None:intergenic 20.0%
!! ATAATTTCCAAAATTCTTGA+AGG - chr2.3:9673681-9673700 None:intergenic 20.0%
!! ATCTACGTAAATTAAATTGT+TGG + chr2.3:9673910-9673929 MS.gene028866:intron 20.0%
!! CACTTTATTATTAAATTTGC+CGG + chr2.3:9673517-9673536 MS.gene028866:intron 20.0%
!! GAAAATGAATATATACTTGA+AGG - chr2.3:9673743-9673762 None:intergenic 20.0%
!! TAGATTAAACAATCAATTTC+AGG - chr2.3:9673217-9673236 None:intergenic 20.0%
!! TAGTTAGTTAGATATGTAAT+AGG - chr2.3:9673463-9673482 None:intergenic 20.0%
!! TTCATATTACCTAAATCATA+AGG - chr2.3:9672877-9672896 None:intergenic 20.0%
!! TTTACTATCCAATTAACTTA+GGG - chr2.3:9674511-9674530 None:intergenic 20.0%
!!! ACAAAAACTTAGTTTTTCTT+TGG + chr2.3:9674530-9674549 MS.gene028866:intron 20.0%
!!! AGATCTAAGAATTATTTCTT+AGG + chr2.3:9673264-9673283 MS.gene028866:intron 20.0%
!!! ATTAACTCTCTAAAATTGTA+AGG - chr2.3:9673089-9673108 None:intergenic 20.0%
!!! ATTTTTGTTTTAACAGTCAA+AGG + chr2.3:9675895-9675914 MS.gene028866:intron 20.0%
!!! CTATTTTCAAACAATGTTTT+AGG + chr2.3:9675591-9675610 MS.gene028866:intron 20.0%
!!! TCAAGAATTTTGGAAATTAT+GGG + chr2.3:9673681-9673700 MS.gene028866:CDS 20.0%
!!! TCAATATATCATCAGAATTT+TGG - chr2.3:9674441-9674460 None:intergenic 20.0%
!!! TTCAAGAATTTTGGAAATTA+TGG + chr2.3:9673680-9673699 MS.gene028866:CDS 20.0%
! AAAGAGATATTGTGAATCAT+TGG + chr2.3:9674161-9674180 MS.gene028866:CDS 25.0%
! AAAGGTTGTATTTATAGACA+CGG - chr2.3:9675754-9675773 None:intergenic 25.0%
! AAGAGATATTGTGAATCATT+GGG + chr2.3:9674162-9674181 MS.gene028866:CDS 25.0%
! AATAGCAAATCTTGTAATGA+TGG + chr2.3:9672445-9672464 MS.gene028866:CDS 25.0%
! AATGAATATATACTTGAAGG+TGG - chr2.3:9673740-9673759 None:intergenic 25.0%
! ACAATGAAGAGATTTAAATG+TGG - chr2.3:9674656-9674675 None:intergenic 25.0%
! ACGTAAATTTAAGCATCTAA+TGG + chr2.3:9673880-9673899 MS.gene028866:intron 25.0%
! AGTTAGGTCATACTTAATAA+CGG + chr2.3:9674570-9674589 MS.gene028866:intron 25.0%
! ATACATGTAAAGGTCTAAAA+TGG - chr2.3:9674228-9674247 None:intergenic 25.0%
! ATAGCAAATCTTGTAATGAT+GGG + chr2.3:9672446-9672465 MS.gene028866:CDS 25.0%
! CAAAAATAGTTATTCCAACA+AGG - chr2.3:9673024-9673043 None:intergenic 25.0%
! CGTAAATTTAAGCATCTAAT+GGG + chr2.3:9673881-9673900 MS.gene028866:intron 25.0%
! GATCAAAATATAGCAGTTTA+GGG + chr2.3:9674837-9674856 MS.gene028866:intron 25.0%
! GTTTACTATCCAATTAACTT+AGG - chr2.3:9674512-9674531 None:intergenic 25.0%
! TACTATAAAATGCAGAGATT+TGG + chr2.3:9675315-9675334 MS.gene028866:intron 25.0%
! TCTTACTATAAGTACAAATC+CGG - chr2.3:9673539-9673558 None:intergenic 25.0%
! TGATCAAAATATAGCAGTTT+AGG + chr2.3:9674836-9674855 MS.gene028866:intron 25.0%
! TTCACATAAGAATCCAAATT+TGG - chr2.3:9675168-9675187 None:intergenic 25.0%
! TTGATCATTAGTGATACAAA+AGG - chr2.3:9674823-9674842 None:intergenic 25.0%
!! ATTTTAGACCTTTACATGTA+TGG + chr2.3:9674227-9674246 MS.gene028866:CDS 25.0%
!! CAGAAATTCCTTTGAATTTT+AGG - chr2.3:9673423-9673442 None:intergenic 25.0%
!! CTTCTTATAATTGCTTTGAA+GGG + chr2.3:9675537-9675556 MS.gene028866:intron 25.0%
!! CTTGTTGGAATAACTATTTT+TGG + chr2.3:9673022-9673041 MS.gene028866:intron 25.0%
!! TTTTAGACCTTTACATGTAT+GGG + chr2.3:9674228-9674247 MS.gene028866:CDS 25.0%
!!! ATAGTTGATTTATTTTAGCG+AGG + chr2.3:9673985-9674004 MS.gene028866:intron 25.0%
!!! GTTTCTTTCTTTTTTTGTGT+AGG + chr2.3:9675037-9675056 MS.gene028866:intron 25.0%
!!! TAGTTGATTTATTTTAGCGA+GGG + chr2.3:9673986-9674005 MS.gene028866:intron 25.0%
!!! TGAGTTTTGAAATTAAAGAG+AGG - chr2.3:9673768-9673787 None:intergenic 25.0%
!!! TTTTTGAAAGGTGAATCTAA+GGG - chr2.3:9673347-9673366 None:intergenic 25.0%
!!! TTTTTTGAAAGGTGAATCTA+AGG - chr2.3:9673348-9673367 None:intergenic 25.0%
AATCAAAGAATAACCCTCAT+GGG + chr2.3:9672632-9672651 MS.gene028866:CDS 30.0%
AGAAAAGAAAAATTACCGGA+TGG - chr2.3:9675446-9675465 None:intergenic 30.0%
ATCCAAGTCCTAAAATTCAA+AGG + chr2.3:9673412-9673431 MS.gene028866:intron 30.0%
ATGGCAATACCTTATGATTT+AGG + chr2.3:9672865-9672884 MS.gene028866:intron 30.0%
CTCGAGACATAAAATTAGTT+AGG + chr2.3:9674554-9674573 MS.gene028866:intron 30.0%
GAATCGGATATAAATTCATC+AGG + chr2.3:9672418-9672437 MS.gene028866:CDS 30.0%
GATATATCTCATAACCTTGT+TGG + chr2.3:9673007-9673026 MS.gene028866:intron 30.0%
GATTATGTTACAAACTTGCA+AGG + chr2.3:9674723-9674742 MS.gene028866:intron 30.0%
GCTTCTTATAATTGCTTTGA+AGG + chr2.3:9675536-9675555 MS.gene028866:intron 30.0%
TTGTCTTCTACTTCCAAATT+TGG + chr2.3:9675152-9675171 MS.gene028866:intron 30.0%
TTTAGACCTTTACATGTATG+GGG + chr2.3:9674229-9674248 MS.gene028866:CDS 30.0%
TTTGAATGCAAAAGAACTCA+CGG + chr2.3:9672963-9672982 MS.gene028866:intron 30.0%
! AGAATATGAATCCAAGCTTT+TGG - chr2.3:9674796-9674815 None:intergenic 30.0%
! ATCTTGTAATGATGGGAATA+TGG + chr2.3:9672453-9672472 MS.gene028866:CDS 30.0%
! CAATTGTTTGGAACAAATAG+AGG + chr2.3:9674127-9674146 MS.gene028866:CDS 30.0%
! CAGAATTTTGGATCTCTTTT+GGG - chr2.3:9674429-9674448 None:intergenic 30.0%
! CTTGGATTTTCTAATATTGG+TGG - chr2.3:9673399-9673418 None:intergenic 30.0%
! GGACTTGGATTTTCTAATAT+TGG - chr2.3:9673402-9673421 None:intergenic 30.0%
! GTGTGAATATATTTTGTGCT+GGG - chr2.3:9673490-9673509 None:intergenic 30.0%
! TCAGAATTTTGGATCTCTTT+TGG - chr2.3:9674430-9674449 None:intergenic 30.0%
! TGTGTGAATATATTTTGTGC+TGG - chr2.3:9673491-9673510 None:intergenic 30.0%
!! ATGTGTTTGTGTTTGTTGTT+GGG + chr2.3:9673570-9673589 MS.gene028866:intron 30.0%
!! TTTTGAAAGGTGAATCTAAG+GGG - chr2.3:9673346-9673365 None:intergenic 30.0%
!!! CTTGGTCACTATTTTTTGAA+AGG - chr2.3:9673359-9673378 None:intergenic 30.0%
!!! TTCCTTTGAATTTTAGGACT+TGG - chr2.3:9673417-9673436 None:intergenic 30.0%
AATATATACTTGAAGGTGGC+TGG - chr2.3:9673736-9673755 None:intergenic 35.0%
AATTCTCCTCCATTTCTCTT+TGG - chr2.3:9672228-9672247 None:intergenic 35.0%
ACGAATCTTCTGTGTAATTC+TGG - chr2.3:9673621-9673640 None:intergenic 35.0%
ACTTTGCTGATCTTTCTGAA+GGG + chr2.3:9672266-9672285 MS.gene028866:CDS 35.0%
AGAGACAAGCAAGAAAATGA+CGG - chr2.3:9675668-9675687 None:intergenic 35.0%
AGATGAAAGCCAAAGAGAAA+TGG + chr2.3:9672216-9672235 MS.gene028866:CDS 35.0%
AGCCAGTCGATCTAAATTAA+CGG + chr2.3:9673177-9673196 MS.gene028866:intron 35.0%
ATCAGTCGTTTATGCATATG+TGG + chr2.3:9674266-9674285 MS.gene028866:CDS 35.0%
ATCTAATTGGTACATGGCAT+GGG - chr2.3:9675370-9675389 None:intergenic 35.0%
ATGAGTCTGTACTCAAAATG+TGG + chr2.3:9674628-9674647 MS.gene028866:intron 35.0%
ATGGGTGAATTACAGAAACA+AGG + chr2.3:9676007-9676026 MS.gene028866:CDS 35.0%
CAAAACGTGAAATAAACTGC+TGG - chr2.3:9675805-9675824 None:intergenic 35.0%
CAATCAAAGAATAACCCTCA+TGG + chr2.3:9672631-9672650 MS.gene028866:CDS 35.0%
CGAATCTTCTGTGTAATTCT+GGG - chr2.3:9673620-9673639 None:intergenic 35.0%
CTAGCAAACCCTAAGTTAAT+TGG + chr2.3:9674500-9674519 MS.gene028866:intron 35.0%
GAAATAGGGAATTAGGAGAT+TGG - chr2.3:9674999-9675018 None:intergenic 35.0%
GAATCTTCTGTGTAATTCTG+GGG - chr2.3:9673619-9673638 None:intergenic 35.0%
GTACTCTAACCTATTATGCA+TGG - chr2.3:9673324-9673343 None:intergenic 35.0%
GTAGTTTCTTCTTCAGATTC+TGG + chr2.3:9672511-9672530 MS.gene028866:CDS 35.0%
GTGTTTGTTCCATGCATAAT+AGG + chr2.3:9673312-9673331 MS.gene028866:intron 35.0%
GTTCATGCAGTAATAGATCT+TGG - chr2.3:9673377-9673396 None:intergenic 35.0%
TCATCTCTTATGCTACTCAA+TGG - chr2.3:9672202-9672221 None:intergenic 35.0%
TGCAGAAATATAGATCGCAT+AGG + chr2.3:9674053-9674072 MS.gene028866:intron 35.0%
TTAGACCTTTACATGTATGG+GGG + chr2.3:9674230-9674249 MS.gene028866:CDS 35.0%
TTGAATGCAAAAGAACTCAC+GGG + chr2.3:9672964-9672983 MS.gene028866:intron 35.0%
! AAAGGTCTAAAATGGTGTAC+TGG - chr2.3:9674220-9674239 None:intergenic 35.0%
! TCTTTCTGAAGGGAACTTAT+TGG + chr2.3:9672276-9672295 MS.gene028866:CDS 35.0%
! TGAATTCATGCTGTGTGTTT+TGG - chr2.3:9675713-9675732 None:intergenic 35.0%
! TTTGGAACAAATAGAGGAGT+TGG + chr2.3:9674133-9674152 MS.gene028866:CDS 35.0%
!! GATGTGTTTGTGTTTGTTGT+TGG + chr2.3:9673569-9673588 MS.gene028866:intron 35.0%
ACAGCATAGAAGTTGTAGAG+AGG + chr2.3:9674678-9674697 MS.gene028866:intron 40.0%
ACTTAGCTTCACCAAAAGCT+TGG + chr2.3:9674782-9674801 MS.gene028866:intron 40.0%
AGAATTCAGCAAGCATTTCC+GGG - chr2.3:9672381-9672400 None:intergenic 40.0%
AGATAGCGACAGATCATTCA+AGG - chr2.3:9672921-9672940 None:intergenic 40.0%
AGTCAAAGGAGGCAATTGTT+TGG + chr2.3:9674115-9674134 MS.gene028866:CDS 40.0%
ATAGTTACCGTTGTTGTCAG+AGG - chr2.3:9675104-9675123 None:intergenic 40.0%
ATGCATAAACGACTGATCCA+CGG - chr2.3:9674263-9674282 None:intergenic 40.0%
CCAAGAGGCAATGGTAAATA+TGG - chr2.3:9675959-9675978 None:intergenic 40.0%
CCATATTTACCATTGCCTCT+TGG + chr2.3:9675956-9675975 MS.gene028866:CDS 40.0%
GACTTTGCTGATCTTTCTGA+AGG + chr2.3:9672265-9672284 MS.gene028866:CDS 40.0%
GAGAATTCAGCAAGCATTTC+CGG - chr2.3:9672382-9672401 None:intergenic 40.0%
GAGACAAGCAAGAAAATGAC+GGG - chr2.3:9675667-9675686 None:intergenic 40.0%
GATCTAATTGGTACATGGCA+TGG - chr2.3:9675371-9675390 None:intergenic 40.0%
GCATGGAACAAACACAAAAG+AGG - chr2.3:9673307-9673326 None:intergenic 40.0%
GTCCGTTAATTTAGATCGAC+TGG - chr2.3:9673182-9673201 None:intergenic 40.0%
GTTGTGTGAATTAGGTGGAT+TGG + chr2.3:9673592-9673611 MS.gene028866:intron 40.0%
TATTGCCATGTGCTCAAAGA+AGG - chr2.3:9672854-9672873 None:intergenic 40.0%
TCATGGGAAGAGAAAAGTGA+AGG + chr2.3:9672648-9672667 MS.gene028866:CDS 40.0%
TCTAATTGGTACATGGCATG+GGG - chr2.3:9675369-9675388 None:intergenic 40.0%
TGAAAGCCAAAGAGAAATGG+AGG + chr2.3:9672219-9672238 MS.gene028866:CDS 40.0%
TTCTTCGTATGCTTCAACGA+CGG + chr2.3:9672328-9672347 MS.gene028866:CDS 40.0%
TTTCTCCTTCTTTGAGCACA+TGG + chr2.3:9672846-9672865 MS.gene028866:intron 40.0%
! GGCTGTACCTTCAAGAATTT+TGG + chr2.3:9673671-9673690 MS.gene028866:CDS 40.0%
! GTTGTTGGGTTGTGTGAATT+AGG + chr2.3:9673584-9673603 MS.gene028866:intron 40.0%
!! TCACTTTTCTCTTCCCATGA+GGG - chr2.3:9672648-9672667 None:intergenic 40.0%
!! TTCACTTTTCTCTTCCCATG+AGG - chr2.3:9672649-9672668 None:intergenic 40.0%
!!! TGTGTTTTGGAGAAAGAGAG+AGG - chr2.3:9675700-9675719 None:intergenic 40.0%
ACCGGGATCTAATTGGTACA+TGG - chr2.3:9675376-9675395 None:intergenic 45.0%
CTTAAAGCTCCAGCACTTGA+AGG + chr2.3:9675980-9675999 MS.gene028866:CDS 45.0%
CTTCCTTTCTCACCTTCCTT+AGG - chr2.3:9672598-9672617 None:intergenic 45.0%
GAGAAAAAACCTAGCGCAAG+TGG - chr2.3:9672832-9672851 None:intergenic 45.0%
GCACAAGAGGGTGGAATATT+TGG - chr2.3:9676037-9676056 None:intergenic 45.0%
GCCATGTACCAATTAGATCC+CGG + chr2.3:9675372-9675391 MS.gene028866:CDS 45.0%
GGAACAAATAGAGGAGTTGG+AGG + chr2.3:9674136-9674155 MS.gene028866:CDS 45.0%
TGCATAAACGACTGATCCAC+GGG - chr2.3:9674262-9674281 None:intergenic 45.0%
TGTGTTACCGGATCTTGAGA+TGG + chr2.3:9672354-9672373 MS.gene028866:CDS 45.0%
TTCTCACCTTCCTTAGGCAA+TGG - chr2.3:9672592-9672611 None:intergenic 45.0%
TTGCCTAAGGAAGGTGAGAA+AGG + chr2.3:9672592-9672611 MS.gene028866:CDS 45.0%
! AAAATGGTGTACTGGTGGCA+TGG - chr2.3:9674212-9674231 None:intergenic 45.0%
! AAATGGTGTACTGGTGGCAT+GGG - chr2.3:9674211-9674230 None:intergenic 45.0%
! ACGCTTCGTATTGGCATCAA+CGG + chr2.3:9674353-9674372 MS.gene028866:CDS 45.0%
! CAAGCAAGAAAATGACGGGA+TGG - chr2.3:9675663-9675682 None:intergenic 45.0%
! CCAGCACTTGAAGGTGTAAT+GGG + chr2.3:9675989-9676008 MS.gene028866:CDS 45.0%
! CCTTCCTTAGGCAATGGATT+CGG - chr2.3:9672586-9672605 None:intergenic 45.0%
! GGTCTAAAATGGTGTACTGG+TGG - chr2.3:9674217-9674236 None:intergenic 45.0%
! GTTGGGTTGTGTGAATTAGG+TGG + chr2.3:9673587-9673606 MS.gene028866:intron 45.0%
! TCCAGCACTTGAAGGTGTAA+TGG + chr2.3:9675988-9676007 MS.gene028866:CDS 45.0%
! TGATGCCAATACGAAGCGTT+AGG - chr2.3:9674352-9674371 None:intergenic 45.0%
!! CGCAGAGGGTCTTTTGAAAA+GGG - chr2.3:9672803-9672822 None:intergenic 45.0%
!! CTTCAAGTGCTGGAGCTTTA+AGG - chr2.3:9675982-9676001 None:intergenic 45.0%
!!! GTTTTGGAGAAAGAGAGAGG+AGG - chr2.3:9675697-9675716 None:intergenic 45.0%
!!! AAAAAAACTAATTTTTTTAA+TGG + chr2.3:9675562-9675581 MS.gene028866:intron 5.0%
!!! AAACTATTAAATTTTATTTT+TGG + chr2.3:9675514-9675533 MS.gene028866:intron 5.0%
AAGCAGCAAGCTGGAGTCAA+AGG + chr2.3:9674101-9674120 MS.gene028866:CDS 50.0%
AAGCATGGTGTTCCTGCAGT+TGG - chr2.3:9675074-9675093 None:intergenic 50.0%
AATTGGTACATGGCATGGGG+TGG - chr2.3:9675366-9675385 None:intergenic 50.0%
ACCGGATGGAAGTCTAAGAG+AGG - chr2.3:9675432-9675451 None:intergenic 50.0%
AGAGCAGCTAGGTGTGGATA+AGG + chr2.3:9673650-9673669 MS.gene028866:CDS 50.0%
CAACGACGGAGATGTGTTAC+CGG + chr2.3:9672342-9672361 MS.gene028866:CDS 50.0%
CACCTCCTAACGCTTCGTAT+TGG + chr2.3:9674344-9674363 MS.gene028866:CDS 50.0%
CCCATTACACCTTCAAGTGC+TGG - chr2.3:9675992-9676011 None:intergenic 50.0%
CCGAATCCATTGCCTAAGGA+AGG + chr2.3:9672583-9672602 MS.gene028866:CDS 50.0%
CGACAACACCGGGATCTAAT+TGG - chr2.3:9675383-9675402 None:intergenic 50.0%
GCAAGTGGTTATTGCGCAGA+GGG - chr2.3:9672817-9672836 None:intergenic 50.0%
GCCTCTCTTAGACTTCCATC+CGG + chr2.3:9675428-9675447 MS.gene028866:CDS 50.0%
GGCTGGTGAGGCGAATATTT+AGG - chr2.3:9674292-9674311 None:intergenic 50.0%
GTACAAGCAGTAGAGCAGCT+AGG + chr2.3:9673639-9673658 MS.gene028866:CDS 50.0%
TAAACGACTGATCCACGGGA+TGG - chr2.3:9674258-9674277 None:intergenic 50.0%
TCCACAGCCTCTGACAACAA+CGG + chr2.3:9675094-9675113 MS.gene028866:CDS 50.0%
TCTAAGAGAGGCTGAGGAGA+TGG - chr2.3:9675420-9675439 None:intergenic 50.0%
TGGAAGTCTAAGAGAGGCTG+AGG - chr2.3:9675426-9675445 None:intergenic 50.0%
TGGAGAAAGAGAGAGGAGGA+TGG - chr2.3:9675693-9675712 None:intergenic 50.0%
TGGTGCCCCCATACATGTAA+AGG - chr2.3:9674238-9674257 None:intergenic 50.0%
TGTGCCGAATCCATTGCCTA+AGG + chr2.3:9672579-9672598 MS.gene028866:CDS 50.0%
! AGGCAATGGATTCGGCACAA+CGG - chr2.3:9672578-9672597 None:intergenic 50.0%
! CAATACGAAGCGTTAGGAGG+TGG - chr2.3:9674346-9674365 None:intergenic 50.0%
! CATTGGGTTGCACCAACCAT+GGG + chr2.3:9674178-9674197 MS.gene028866:CDS 50.0%
! CGCTTCGTATTGGCATCAAC+GGG + chr2.3:9674354-9674373 MS.gene028866:CDS 50.0%
! GTTCCTGCAGTTGGTGCATT+TGG - chr2.3:9675065-9675084 None:intergenic 50.0%
! TCATTGGGTTGCACCAACCA+TGG + chr2.3:9674177-9674196 MS.gene028866:CDS 50.0%
! TGCCAATACGAAGCGTTAGG+AGG - chr2.3:9674349-9674368 None:intergenic 50.0%
!! AGATTCTGGTTCGAGTCGTG+TGG + chr2.3:9672525-9672544 MS.gene028866:CDS 50.0%
!! ATTTGGCTCTCCAACCGTTC+CGG + chr2.3:9675332-9675351 MS.gene028866:CDS 50.0%
!! GCGCAGAGGGTCTTTTGAAA+AGG - chr2.3:9672804-9672823 None:intergenic 50.0%
!! GCTTTAAGGCCAAGAGGCAA+TGG - chr2.3:9675968-9675987 None:intergenic 50.0%
ACCGGATCTTGAGATGGACC+CGG + chr2.3:9672360-9672379 MS.gene028866:CDS 55.0%
ACCGTTGTTGTCAGAGGCTG+TGG - chr2.3:9675098-9675117 None:intergenic 55.0%
AGCAGTAGAGCAGCTAGGTG+TGG + chr2.3:9673644-9673663 MS.gene028866:CDS 55.0%
AGGCTGAGGAGATGGTTGAC+CGG - chr2.3:9675412-9675431 None:intergenic 55.0%
ATATTCGCCTCACCAGCCAC+CGG + chr2.3:9674294-9674313 MS.gene028866:CDS 55.0%
ATGGGAGGGAAACCCATGGT+TGG - chr2.3:9674193-9674212 None:intergenic 55.0%
CAGCAAGCTGGAGTCAAAGG+AGG + chr2.3:9674104-9674123 MS.gene028866:CDS 55.0%
CGCAAGTGGTTATTGCGCAG+AGG - chr2.3:9672818-9672837 None:intergenic 55.0%
GAAGGTGGCTGGCGATGTTA+TGG - chr2.3:9673725-9673744 None:intergenic 55.0%
GCGCAATAACCACTTGCGCT+AGG + chr2.3:9672820-9672839 MS.gene028866:intron 55.0%
GCTCCAAATGCACCAACTGC+AGG + chr2.3:9675059-9675078 MS.gene028866:CDS 55.0%
GCTGAATTCTCCCTCAGCAG+CGG + chr2.3:9672391-9672410 MS.gene028866:CDS 55.0%
GTCAGAGGCTGTGGAAAGCA+TGG - chr2.3:9675089-9675108 None:intergenic 55.0%
GTGAAGCTGAAGCAGCAAGC+TGG + chr2.3:9674092-9674111 MS.gene028866:CDS 55.0%
TCCGGGTCCATCTCAAGATC+CGG - chr2.3:9672364-9672383 None:intergenic 55.0%
!! GCTGGAGCTTTAAGGCCAAG+AGG - chr2.3:9675974-9675993 None:intergenic 55.0%
!! TTTGGCTCTCCAACCGTTCC+GGG + chr2.3:9675333-9675352 MS.gene028866:CDS 55.0%
ATTCTCCCTCAGCAGCGGTG+AGG + chr2.3:9672396-9672415 MS.gene028866:CDS 60.0%
CCTCAGCAGCGGTGAGGAAT+CGG + chr2.3:9672402-9672421 MS.gene028866:CDS 60.0%
CGATTCCTCACCGCTGCTGA+GGG - chr2.3:9672404-9672423 None:intergenic 60.0%
CTGAGGAGATGGTTGACCGG+CGG - chr2.3:9675409-9675428 None:intergenic 60.0%
GGTGGCTGGCGATGTTATGG+CGG - chr2.3:9673722-9673741 None:intergenic 60.0%
GTGGCTGGCGATGTTATGGC+GGG - chr2.3:9673721-9673740 None:intergenic 60.0%
TGAGGAGATGGTTGACCGGC+GGG - chr2.3:9675408-9675427 None:intergenic 60.0%
TGGCATGGGAGGGAAACCCA+TGG - chr2.3:9674197-9674216 None:intergenic 60.0%
TGGTACATGGCATGGGGTGG+TGG - chr2.3:9675363-9675382 None:intergenic 60.0%
! GAAGCGTTAGGAGGTGGAGC+CGG - chr2.3:9674340-9674359 None:intergenic 60.0%
! GGTGTACTGGTGGCATGGGA+GGG - chr2.3:9674207-9674226 None:intergenic 60.0%
! TCACCAGCCACCGGCTAACT+GGG + chr2.3:9674303-9674322 MS.gene028866:CDS 60.0%
! TGGTGTACTGGTGGCATGGG+AGG - chr2.3:9674208-9674227 None:intergenic 60.0%
!! TGGCGATGTTATGGCGGGTG+AGG - chr2.3:9673716-9673735 None:intergenic 60.0%
CAGTTAGCCGGTGGCTGGTG+AGG - chr2.3:9674304-9674323 None:intergenic 65.0%
CCGATTCCTCACCGCTGCTG+AGG - chr2.3:9672405-9672424 None:intergenic 65.0%
GAGGAGATGGTTGACCGGCG+GGG - chr2.3:9675407-9675426 None:intergenic 65.0%
GGTGGAATGCCCGGAACGGT+TGG - chr2.3:9675345-9675364 None:intergenic 65.0%
! CTCACCAGCCACCGGCTAAC+TGG + chr2.3:9674302-9674321 MS.gene028866:CDS 65.0%
!! GCATGGGGTGGTGGAATGCC+CGG - chr2.3:9675354-9675373 None:intergenic 65.0%
!! GGGTGGTGGAATGCCCGGAA+CGG - chr2.3:9675349-9675368 None:intergenic 65.0%
!! TGTATGGGGGCACCATCCCG+TGG + chr2.3:9674243-9674262 MS.gene028866:CDS 65.0%
ACCGGCGGGGACGACAACAC+CGG - chr2.3:9675394-9675413 None:intergenic 70.0%
CGCGCAGGTGCCCAGTTAGC+CGG - chr2.3:9674316-9674335 None:intergenic 70.0%
CGGCTAACTGGGCACCTGCG+CGG + chr2.3:9674314-9674333 MS.gene028866:CDS 70.0%
GCAGGTGCCCAGTTAGCCGG+TGG - chr2.3:9674313-9674332 None:intergenic 70.0%
GTGCCCAGTTAGCCGGTGGC+TGG - chr2.3:9674309-9674328 None:intergenic 70.0%
TAACTGGGCACCTGCGCGGC+CGG + chr2.3:9674318-9674337 MS.gene028866:CDS 70.0%
CCGGCGGGGACGACAACACC+GGG - chr2.3:9675393-9675412 None:intergenic 75.0%
!! CCCGGTGTTGTCGTCCCCGC+CGG + chr2.3:9675390-9675409 MS.gene028866:CDS 75.0%
! GGAGGTGGAGCCGGCCGCGC+AGG - chr2.3:9674331-9674350 None:intergenic 85.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 9672184 9676060 9672184 ID=MS.gene028866
chr2.3 mRNA 9672184 9676060 9672184 ID=MS.gene028866.t1;Parent=MS.gene028866
chr2.3 exon 9672184 9672669 9672184 ID=MS.gene028866.t1.exon1;Parent=MS.gene028866.t1
chr2.3 CDS 9672184 9672669 9672184 ID=cds.MS.gene028866.t1;Parent=MS.gene028866.t1
chr2.3 exon 9673606 9673746 9673606 ID=MS.gene028866.t1.exon2;Parent=MS.gene028866.t1
chr2.3 CDS 9673606 9673746 9673606 ID=cds.MS.gene028866.t1;Parent=MS.gene028866.t1
chr2.3 exon 9674058 9674375 9674058 ID=MS.gene028866.t1.exon3;Parent=MS.gene028866.t1
chr2.3 CDS 9674058 9674375 9674058 ID=cds.MS.gene028866.t1;Parent=MS.gene028866.t1
chr2.3 exon 9675059 9675115 9675059 ID=MS.gene028866.t1.exon4;Parent=MS.gene028866.t1
chr2.3 CDS 9675059 9675115 9675059 ID=cds.MS.gene028866.t1;Parent=MS.gene028866.t1
chr2.3 exon 9675330 9675449 9675330 ID=MS.gene028866.t1.exon5;Parent=MS.gene028866.t1
chr2.3 CDS 9675330 9675449 9675330 ID=cds.MS.gene028866.t1;Parent=MS.gene028866.t1
chr2.3 exon 9675911 9676060 9675911 ID=MS.gene028866.t1.exon6;Parent=MS.gene028866.t1
chr2.3 CDS 9675911 9676060 9675911 ID=cds.MS.gene028866.t1;Parent=MS.gene028866.t1
Gene Sequence

>MS.gene028866

ATGCTAGCAGTAGCACCATTGAGTAGCATAAGAGATGAAAGCCAAAGAGAAATGGAGGAGAATTTATCAATTGAGACGTGTGACTTTGCTGATCTTTCTGAAGGGAACTTATTGGAAAGCATCAATTTTGAATTTGATGATGATTTCTTCGTATGCTTCAACGACGGAGATGTGTTACCGGATCTTGAGATGGACCCGGAAATGCTTGCTGAATTCTCCCTCAGCAGCGGTGAGGAATCGGATATAAATTCATCAGGCGCAAATAGCAAATCTTGTAATGATGGGAATATGGTTAGTATTGAGAGAAAATTACAAGATGAAGAGAAAGTAGTTTCTTCTTCAGATTCTGGTTCGAGTCGTGTGGAAGAGATAATTAGCAAAAGAGATGAATCCGTTGTGCCGAATCCATTGCCTAAGGAAGGTGAGAAAGGAAGAAAATCATCATCTCAATCAAAGAATAACCCTCATGGGAAGAGAAAAGTGAAGGTGAGTTGCTATATATATAATTGCTATTTAATTTGGTATATGTTTGTTAATTAGTTACAAACCCTTAATTTTTTTTTCTTTTCAAAAGACCCTTTGTTGATTGTTTATTATAAGAAATTGAACTTCTTAACCCTTTTCAAAAGACCCTCTGCGCAATAACCACTTGCGCTAGGTTTTTTCTCCTTCTTTGAGCACATGGCAATACCTTATGATTTAGGTAATATGAAGTTCATGTGAAGCTGAGATAACCTTGAATGATCTGTCGCTATCTTTATATTTAGTCTTATCAAGTTTTTGAATGCAAAAGAACTCACGGGTATACTGTAAGCAAGAGAGAGATATATCTCATAACCTTGTTGGAATAACTATTTTTGGTAGTTTTTTTTGTTGTAAATTAAGCTATTTTTAGAATAACTCCTTACAATTTTAGAGAGTTAATCACTCTCAACATATATTATACAATTTTGAAAATAGATTTTGTTGTAATTGCATGATGCAATAAATCTCAGCCAGTCGATCTAAATTAACGGACATATCATCTAACCCTGAAATTGATTGTTTAATCTAGACACTCTGATCTCGAATCAATGATCGAGATCTAAGAATTATTTCTTAGGAGTTTTTTTTTTTTTTTCCTCTTTTGTGTTTGTTCCATGCATAATAGGTTAGAGTACCCCTTAGATTCACCTTTCAAAAAATAGTGACCAAGATCTATTACTGCATGAACCACCAATATTAGAAAATCCAAGTCCTAAAATTCAAAGGAATTTCTGACAACATACTTAAAAATCCTATTACATATCTAACTAACTAATGTCCCAGCACAAAATATATTCACACAATTTGACACTTTATTATTAAATTTGCCGGATTTGTACTTATAGTAAGATATAAATAATGATGTGTTTGTGTTTGTTGTTGGGTTGTGTGAATTAGGTGGATTGGACCCCAGAATTACACAGAAGATTCGTACAAGCAGTAGAGCAGCTAGGTGTGGATAAGGCTGTACCTTCAAGAATTTTGGAAATTATGGGAATTGACTGCCTCACCCGCCATAACATCGCCAGCCACCTTCAAGTATATATTCATTTTCATCCTCTCTTTAATTTCAAAACTCAATATACTGAAAAAAAAGTGTTATTTTGAATCTATTTCTCTAGTAAATGATCGAGCTTGTTTTGATTTTCTTTTGATATTATTATACAAATTCACGTAAATTTAAGCATCTAATGGGAAAAAAATCTACGTAAATTAAATTGTTGGTTAGAGTTTAGATTTAAAACATAGATACATGAAAGAAAAATTTAAGTAAATTATAGTTGATTTATTTTAGCGAGGGAAGATTAAATTCTAAAATTAAATATTGAATTTTGAACGTATATATGCAGAAATATAGATCGCATAGGAAACATTTGTTAGCACGTGAAGCTGAAGCAGCAAGCTGGAGTCAAAGGAGGCAATTGTTTGGAACAAATAGAGGAGTTGGAGGAAAAAGAGATATTGTGAATCATTGGGTTGCACCAACCATGGGTTTCCCTCCCATGCCACCAGTACACCATTTTAGACCTTTACATGTATGGGGGCACCATCCCGTGGATCAGTCGTTTATGCATATGTGGCCTAAATATTCGCCTCACCAGCCACCGGCTAACTGGGCACCTGCGCGGCCGGCTCCACCTCCTAACGCTTCGTATTGGCATCAACGGGTAAGTAAATTAAGTTTCAAATGCATATCTCGAGTTGTTGAGCTGTAACGCCCAAAAGAGATCCAAAATTCTGATGATATATTGACAATTAACATTTTTATATATAAAAGTCATTTTATTTGAGCTAGCAAACCCTAAGTTAATTGGATAGTAAACAAAAACTTAGTTTTTCTTTGGACTCGAGACATAAAATTAGTTAGGTCATACTTAATAACGGAGTCAAATTATAATCAATTAATTAAGCTTACTATAATGAGTCTGTACTCAAAATGTGGAACCACATTTAAATCTCTTCATTGTCAACAGCATAGAAGTTGTAGAGAGGATAAAAAGTTTAAGCTAGAAAAGATTATGTTACAAACTTGCAAGGACTCTCAAACATGATTAACATACTTTATATGCTTAGACTTAGCTTCACCAAAAGCTTGGATTCATATTCTCTCTCCTTTTGTATCACTAATGATCAAAATATAGCAGTTTAGGGTAAAAAGTTAAACAGTTAGTTTGAGATTTTTTTTTTTCTTGAGCTGTTATATTTCATCAGCAGAAAAAACAAGTTATCTTAATTACTTTTTTTGACAAAAAGTTATCTTAGTTAGTTAAAACAGCAAAGAAAATGACCAATCTCCTAATTCCCTATTTCATTTTATTTGTCTAAATAGTTTCTTTCTTTTTTTGTGTAGGCTCCAAATGCACCAACTGCAGGAACACCATGCTTTCCACAGCCTCTGACAACAACGGTAACTATTCACGTTACTCTTTTGTATTTACTAGAGTTGTCTTCTACTTCCAAATTTGGATTCTTATGTGAATTTACTTACACTACAAACAATGTCATTTTTATTACTCACAAAAGTCATGCATTATTTAACTTATTCATTTTTTTTTTTGTTACAATTATTTAACTTATTCATATTATTGAGGAAATTAATTCATAAATACTATAAAATGCAGAGATTTGGCTCTCCAACCGTTCCGGGCATTCCACCACCCCATGCCATGTACCAATTAGATCCCGGTGTTGTCGTCCCCGCCGGTCAACCATCTCCTCAGCCTCTCTTAGACTTCCATCCGGTAATTTTTCTTTTCTTTTATCTTGTAAATTTTTTAGAAAAACTATTCTTTATAATCTATGAAAAAACTATTAAATTTTATTTTTGGCTTCTTATAATTGCTTTGAAGGGAAAAAAAAACTAATTTTTTTAATGGAAAACACTATTTTCAAACAATGTTTTAGGATCAGAATGACAATTTTTTTATTATGATTTAGTCTAATTATTTCTTCCATCCCGTCATTTTCTTGCTTGTCTCTCTCCATCCTCCTCTCTCTTTCTCCAAAACACACAGCATGAATTCACAACGCATTATTGTTCGTCCGTGTCTATAAATACAACCTTTTATTTTGTTGTTTTTCGTATCTTTCTTACCAGCAGTTTATTTCACGTTTTGATATTGTAACTTAGTCAAAAAAATTTAAGAGAATAATATTAAAATATTGCATGCTTGATGTGTACGTTATATTTTTGTTTTAACAGTCAAAGGAGAGCATCGACGCAGCTATTAGTGATGTATTATCAAAACCATATTTACCATTGCCTCTTGGCCTTAAAGCTCCAGCACTTGAAGGTGTAATGGGTGAATTACAGAAACAAGGAATTCCAAATATTCCACCCTCTTGTGCTTGA
Protein sequence

>MS.gene028866.t1

MLAVAPLSSIRDESQREMEENLSIETCDFADLSEGNLLESINFEFDDDFFVCFNDGDVLPDLEMDPEMLAEFSLSSGEESDINSSGANSKSCNDGNMVSIERKLQDEEKVVSSSDSGSSRVEEIISKRDESVVPNPLPKEGEKGRKSSSQSKNNPHGKRKVKVDWTPELHRRFVQAVEQLGVDKAVPSRILEIMGIDCLTRHNIASHLQKYRSHRKHLLAREAEAASWSQRRQLFGTNRGVGGKRDIVNHWVAPTMGFPPMPPVHHFRPLHVWGHHPVDQSFMHMWPKYSPHQPPANWAPARPAPPPNASYWHQRAPNAPTAGTPCFPQPLTTTRFGSPTVPGIPPPHAMYQLDPGVVVPAGQPSPQPLLDFHPSKESIDAAISDVLSKPYLPLPLGLKAPALEGVMGELQKQGIPNIPPSCA