AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene028875

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene028875.t1 MTR_2g090605 96.643 417 6 3 1 411 1 415 0.0 827
MS.gene028875.t1 MTR_4g078660 64.615 195 36 4 31 223 29 192 6.53e-81 251
MS.gene028875.t1 MTR_6g090380 67.883 137 32 2 56 180 70 206 4.51e-66 215
MS.gene028875.t1 MTR_8g102100 38.162 359 169 11 63 410 59 375 1.93e-63 208
MS.gene028875.t1 MTR_7g092070 68.966 116 36 0 73 188 260 375 2.74e-57 200
MS.gene028875.t1 MTR_3g029590 46.522 230 94 6 73 291 260 471 1.59e-56 198
MS.gene028875.t1 MTR_3g103960 55.769 156 64 3 30 180 2 157 1.32e-54 182
MS.gene028875.t1 MTR_1g050438 64.348 115 41 0 73 187 224 338 9.12e-52 182
MS.gene028875.t1 MTR_0728s0020 64.348 115 41 0 73 187 240 354 2.13e-51 182
MS.gene028875.t1 MTR_5g071070 61.207 116 45 0 73 188 144 259 3.79e-51 182
MS.gene028875.t1 MTR_5g082830 64.957 117 39 1 73 189 213 327 4.26e-51 182
MS.gene028875.t1 MTR_5g071070 61.207 116 45 0 73 188 226 341 1.32e-50 181
MS.gene028875.t1 MTR_1g075890 61.207 116 45 0 73 188 225 340 3.37e-49 177
MS.gene028875.t1 MTR_3g435680 61.207 116 45 0 73 188 147 262 1.65e-48 170
MS.gene028875.t1 MTR_3g070880 56.034 116 51 0 73 188 159 274 7.15e-45 162
MS.gene028875.t1 MTR_3g435590 59.813 107 43 0 73 179 234 340 1.20e-43 158
MS.gene028875.t1 MTR_3g464270 50.877 114 55 1 76 188 8 121 1.08e-36 137
MS.gene028875.t1 MTR_3g464260 62.162 74 28 0 108 181 212 285 2.23e-29 120
MS.gene028875.t1 MTR_3g464290 55.814 86 37 1 73 157 96 181 3.39e-29 119
MS.gene028875.t1 MTR_3g464280 40.179 112 33 1 70 181 181 258 3.51e-21 95.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene028875.t1 AT1G03790 46.556 363 135 12 66 410 71 392 1.65e-85 266
MS.gene028875.t1 AT5G44260 42.569 397 180 12 30 410 16 380 2.93e-77 244
MS.gene028875.t1 AT2G19810 70.803 137 30 1 56 182 47 183 1.52e-70 226
MS.gene028875.t1 AT4G29190 55.932 177 59 2 24 181 7 183 3.37e-68 220
MS.gene028875.t1 AT2G25900 74.561 114 29 0 71 184 84 197 3.29e-65 211
MS.gene028875.t1 AT2G25900 74.561 114 29 0 71 184 84 197 3.29e-65 211
MS.gene028875.t1 AT2G41900 67.241 116 38 0 73 188 257 372 3.47e-56 197
MS.gene028875.t1 AT5G58620 66.957 115 37 1 73 186 205 319 2.78e-54 190
MS.gene028875.t1 AT5G07500 68.182 110 35 0 70 179 45 154 2.00e-52 176
MS.gene028875.t1 AT5G12850 65.217 115 39 1 73 186 253 367 5.09e-52 185
MS.gene028875.t1 AT3G55980 38.976 254 102 5 28 270 156 367 3.29e-49 176
MS.gene028875.t1 AT2G40140 40.851 235 90 6 73 293 210 409 6.57e-49 175
MS.gene028875.t1 AT2G40140 40.851 235 90 6 73 293 210 409 6.57e-49 175
MS.gene028875.t1 AT3G55980 38.976 254 102 5 28 270 223 434 9.98e-49 175

Find 81 sgRNAs with CRISPR-Local

Find 105 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGGCGGGTGAGGAGCTTTCT+TGG 0.183749 2.3:-9765455 None:intergenic
AGACATGCTTATTGATCTTT+TGG 0.193333 2.3:+9766192 MS.gene028875:CDS
CATTGTGTGGGAGGAACTTT+TGG 0.221739 2.3:-9765523 None:intergenic
TGTTGCTGATTCTGTTCTTC+AGG 0.283744 2.3:-9766328 None:intergenic
GAGGGATGTCGATGTCTCTA+AGG 0.318194 2.3:-9765433 None:intergenic
GTTGGTGGTGGTGACATTAA+TGG 0.334395 2.3:+9766517 MS.gene028875:CDS
AAACAGCGACAACATTAATA+AGG 0.381006 2.3:+9766492 MS.gene028875:CDS
CGGTGGTGTTGCGGCGGGTG+AGG 0.397490 2.3:-9765466 None:intergenic
TCATTCACCCATCCGAGATC+AGG 0.400183 2.3:-9766556 None:intergenic
TTTGGGAGAGAGAGGTTGGT+AGG 0.420760 2.3:-9765405 None:intergenic
CTCGTAGCCGGAGCCATGAC+TGG 0.421786 2.3:+9765621 MS.gene028875:CDS
CGCCGCGGTGGCTGTAACCG+TGG 0.429136 2.3:+9765734 MS.gene028875:CDS
GAAGATGATGATGATGTAAC+AGG 0.430284 2.3:-9765899 None:intergenic
CAGCCACCGCGGCGATACTC+AGG 0.436266 2.3:-9765725 None:intergenic
TCTTGTCCTGCCCCTGATCT+CGG 0.437151 2.3:+9766544 MS.gene028875:CDS
GAAGATGTCGACGGCGGCGG+TGG 0.446476 2.3:-9765483 None:intergenic
AAGAATGAAACTTGTGTTGT+TGG 0.454570 2.3:-9765382 None:intergenic
GGACTTTGAATTCATACATT+CGG 0.463131 2.3:-9765589 None:intergenic
CGGCGGCGGTGGTGTTGCGG+CGG 0.463780 2.3:-9765472 None:intergenic
AGTGCTTTAGCAGCAGAAAC+AGG 0.464078 2.3:-9766265 None:intergenic
GACAACATTAATAAGGTTGT+TGG 0.466730 2.3:+9766499 MS.gene028875:CDS
GGCGGCGGTGGTGTTGCGGC+GGG 0.472525 2.3:-9765471 None:intergenic
GTCCTGCCCCTGATCTCGGA+TGG 0.476419 2.3:+9766548 MS.gene028875:CDS
GGAGAAGATGTCGACGGCGG+CGG 0.481474 2.3:-9765486 None:intergenic
CGGGTGAGGAGCTTTCTTGG+AGG 0.487835 2.3:-9765452 None:intergenic
CGGAAATGATCTGATGAGTA+AGG 0.490767 2.3:-9765569 None:intergenic
GGGTGAGGAGCTTTCTTGGA+GGG 0.496924 2.3:-9765451 None:intergenic
TCCTGCCCCTGATCTCGGAT+GGG 0.499250 2.3:+9766549 MS.gene028875:CDS
AGAACTGAAGCATGCAAAGA+TGG 0.503562 2.3:+9765815 MS.gene028875:CDS
TCCGCCGGTGCACTCGTAGC+CGG 0.504444 2.3:+9765609 MS.gene028875:CDS
ACACCGTTACGTGGCTTCAT+CGG 0.504782 2.3:-9766115 None:intergenic
ATTAATAAGGTTGTTGGTGG+TGG 0.510024 2.3:+9766505 MS.gene028875:CDS
GAACCATAGCGTGAGAGCGA+TGG 0.517489 2.3:-9766139 None:intergenic
CGACGGCGGCGGTGGTGTTG+CGG 0.519055 2.3:-9765475 None:intergenic
CGTGGCTTCATCGGAGACAT+AGG 0.522416 2.3:-9766106 None:intergenic
CCACGGCGGTTTCATTACTC+AGG 0.527158 2.3:+9765692 MS.gene028875:CDS
CATTCACCCATCCGAGATCA+GGG 0.528306 2.3:-9766555 None:intergenic
TTGTCGACATCATTGAAACT+TGG 0.531596 2.3:-9766433 None:intergenic
GTTCCATCGCTCTCACGCTA+TGG 0.533114 2.3:+9766136 MS.gene028875:CDS
AACATTAATAAGGTTGTTGG+TGG 0.533829 2.3:+9766502 MS.gene028875:CDS
CACTGTGGCGGTAATGGTAA+TGG 0.535187 2.3:+9766010 MS.gene028875:CDS
ATCTGATGAGTAAGGATCAT+CGG 0.544740 2.3:-9765561 None:intergenic
GCTTCAGTTCTGTATCTAGC+AGG 0.547143 2.3:-9765803 None:intergenic
GAAGGGATGAATTTCAATGA+CGG 0.555565 2.3:+9766223 MS.gene028875:CDS
GGCGGTAATGGTAATGGTAA+TGG 0.562964 2.3:+9766016 MS.gene028875:CDS
AATGAAACCGCCGTGGATCA+CGG 0.566037 2.3:-9765685 None:intergenic
AAGCTCGCCGCCGTGATCCA+CGG 0.567851 2.3:+9765675 MS.gene028875:CDS
AGTCAGTCCAGTCATGGCTC+CGG 0.569804 2.3:-9765628 None:intergenic
TGATGATCAAAAGAAGAAGA+AGG 0.576971 2.3:-9766364 None:intergenic
GGAGACATAGGTGGTGATGC+CGG 0.581592 2.3:-9766094 None:intergenic
GATACTTGTGAATTTGCTCA+TGG 0.582670 2.3:+9765758 MS.gene028875:CDS
ATGGACAGTCAGTCCAGTCA+TGG 0.586583 2.3:-9765634 None:intergenic
AGCCACCGCGGCGATACTCA+GGG 0.587575 2.3:-9765724 None:intergenic
ACCCATCCGAGATCAGGGGC+AGG 0.589319 2.3:-9766550 None:intergenic
GACTGTCCATTCGCTCACCC+CGG 0.597229 2.3:+9765647 MS.gene028875:CDS
AGCACTTCAGATACAAAACA+TGG 0.598969 2.3:+9766282 MS.gene028875:CDS
TCTCCGATGAAGCCACGTAA+CGG 0.601715 2.3:+9766112 MS.gene028875:CDS
AGGGATGTCGATGTCTCTAA+GGG 0.602570 2.3:-9765432 None:intergenic
TCCGGCTACGAGTGCACCGG+CGG 0.607263 2.3:-9765610 None:intergenic
AGTCAGAGTCATTGTGTGGG+AGG 0.622332 2.3:-9765532 None:intergenic
TCTGAGTCAGAGTCATTGTG+TGG 0.623962 2.3:-9765536 None:intergenic
GGCTCCGGCTACGAGTGCAC+CGG 0.627207 2.3:-9765613 None:intergenic
ATGATGATGATGTAACAGGA+AGG 0.628815 2.3:-9765895 None:intergenic
TGCCCTGAGTATCGCCGCGG+TGG 0.630381 2.3:+9765722 MS.gene028875:CDS
CACGGCGGTTTCATTACTCA+GGG 0.632004 2.3:+9765693 MS.gene028875:CDS
CTGAGTCAGAGTCATTGTGT+GGG 0.635621 2.3:-9765535 None:intergenic
CAAATTCACAAGTATCGCCA+CGG 0.650826 2.3:-9765751 None:intergenic
AGCGATGGAACACCGTTACG+TGG 0.658393 2.3:-9766124 None:intergenic
GACATAGGTGGTGATGCCGG+AGG 0.666150 2.3:-9766091 None:intergenic
GTCGTCGGAGAAGATGTCGA+CGG 0.666964 2.3:-9765492 None:intergenic
GGAAGGATTCTTAATTGACG+AGG 0.669701 2.3:-9765878 None:intergenic
TGTATGAATTCAAAGTCCGC+CGG 0.674896 2.3:+9765594 MS.gene028875:CDS
GTCGGAGAAGATGTCGACGG+CGG 0.678761 2.3:-9765489 None:intergenic
ATTCACCCATCCGAGATCAG+GGG 0.681023 2.3:-9766554 None:intergenic
GGCTTCATCGGAGACATAGG+TGG 0.681714 2.3:-9766103 None:intergenic
CCTGAGTAATGAAACCGCCG+TGG 0.683137 2.3:-9765692 None:intergenic
CTCGCCGCCGTGATCCACGG+CGG 0.698305 2.3:+9765678 MS.gene028875:CDS
GCACTTCAGATACAAAACAT+GGG 0.708790 2.3:+9766283 MS.gene028875:CDS
CGCCACGGTTACAGCCACCG+CGG 0.740750 2.3:-9765736 None:intergenic
GAAACCGCCGTGGATCACGG+CGG 0.763141 2.3:-9765682 None:intergenic
GTTTGCCCTGAGTATCGCCG+CGG 0.768550 2.3:+9765719 MS.gene028875:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AACAATATGAACATGTTTTT+GGG + chr2.3:9766469-9766488 MS.gene028875:CDS 20.0%
!! CAACAATATGAACATGTTTT+TGG + chr2.3:9766468-9766487 MS.gene028875:CDS 25.0%
AAACAGCGACAACATTAATA+AGG + chr2.3:9766492-9766511 MS.gene028875:CDS 30.0%
AACATTAATAAGGTTGTTGG+TGG + chr2.3:9766502-9766521 MS.gene028875:CDS 30.0%
AAGAATGAAACTTGTGTTGT+TGG - chr2.3:9765385-9765404 None:intergenic 30.0%
GACAACATTAATAAGGTTGT+TGG + chr2.3:9766499-9766518 MS.gene028875:CDS 30.0%
GGACTTTGAATTCATACATT+CGG - chr2.3:9765592-9765611 None:intergenic 30.0%
TGATGATCAAAAGAAGAAGA+AGG - chr2.3:9766367-9766386 None:intergenic 30.0%
! AGACATGCTTATTGATCTTT+TGG + chr2.3:9766192-9766211 MS.gene028875:CDS 30.0%
! GACATGCTTATTGATCTTTT+GGG + chr2.3:9766193-9766212 MS.gene028875:CDS 30.0%
!! ATACCAAAAAGTGTTGAAGT+TGG - chr2.3:9766055-9766074 None:intergenic 30.0%
!!! ATCTTTTGGGTTCTTTTGAA+GGG + chr2.3:9766206-9766225 MS.gene028875:CDS 30.0%
!!! ATGTCTCTAAGGGATTTTTT+GGG - chr2.3:9765425-9765444 None:intergenic 30.0%
!!! TGTTTGATTTTGAAGCAACA+TGG - chr2.3:9765973-9765992 None:intergenic 30.0%
AGCACTTCAGATACAAAACA+TGG + chr2.3:9766282-9766301 MS.gene028875:CDS 35.0%
ATCTGATGAGTAAGGATCAT+CGG - chr2.3:9765564-9765583 None:intergenic 35.0%
GAAGGGATGAATTTCAATGA+CGG + chr2.3:9766223-9766242 MS.gene028875:CDS 35.0%
GCACTTCAGATACAAAACAT+GGG + chr2.3:9766283-9766302 MS.gene028875:CDS 35.0%
TTGTCGACATCATTGAAACT+TGG - chr2.3:9766436-9766455 None:intergenic 35.0%
! ATGATGATGATGTAACAGGA+AGG - chr2.3:9765898-9765917 None:intergenic 35.0%
! ATTAATAAGGTTGTTGGTGG+TGG + chr2.3:9766505-9766524 MS.gene028875:CDS 35.0%
! GAAGATGATGATGATGTAAC+AGG - chr2.3:9765902-9765921 None:intergenic 35.0%
! GATACTTGTGAATTTGCTCA+TGG + chr2.3:9765758-9765777 MS.gene028875:CDS 35.0%
! TCTCCAACTTCAACACTTTT+TGG + chr2.3:9766049-9766068 MS.gene028875:CDS 35.0%
!!! GATCTTTTGGGTTCTTTTGA+AGG + chr2.3:9766205-9766224 MS.gene028875:CDS 35.0%
!!! GATGTCTCTAAGGGATTTTT+TGG - chr2.3:9765426-9765445 None:intergenic 35.0%
!!! TGTTGTTTGTTTTGTCACTG+TGG + chr2.3:9765995-9766014 MS.gene028875:CDS 35.0%
AGAACTGAAGCATGCAAAGA+TGG + chr2.3:9765815-9765834 MS.gene028875:CDS 40.0%
CGGAAATGATCTGATGAGTA+AGG - chr2.3:9765572-9765591 None:intergenic 40.0%
GGAAGGATTCTTAATTGACG+AGG - chr2.3:9765881-9765900 None:intergenic 40.0%
TGTATGAATTCAAAGTCCGC+CGG + chr2.3:9765594-9765613 MS.gene028875:CDS 40.0%
! CAAATTCACAAGTATCGCCA+CGG - chr2.3:9765754-9765773 None:intergenic 40.0%
!! CTCATGGTGTTTTTGAATGC+TGG + chr2.3:9765774-9765793 MS.gene028875:CDS 40.0%
!! TGTTGCTGATTCTGTTCTTC+AGG - chr2.3:9766331-9766350 None:intergenic 40.0%
!!! ATTTTTTGGGAGAGAGAGGT+TGG - chr2.3:9765412-9765431 None:intergenic 40.0%
!!! TGTTTGTTTTGTCACTGTGG+CGG + chr2.3:9765998-9766017 MS.gene028875:CDS 40.0%
AGGGATGTCGATGTCTCTAA+GGG - chr2.3:9765435-9765454 None:intergenic 45.0%
AGTGCTTTAGCAGCAGAAAC+AGG - chr2.3:9766268-9766287 None:intergenic 45.0%
CTGAGTCAGAGTCATTGTGT+GGG - chr2.3:9765538-9765557 None:intergenic 45.0%
GCTTCAGTTCTGTATCTAGC+AGG - chr2.3:9765806-9765825 None:intergenic 45.0%
TCTGAGTCAGAGTCATTGTG+TGG - chr2.3:9765539-9765558 None:intergenic 45.0%
! CATTGTGTGGGAGGAACTTT+TGG - chr2.3:9765526-9765545 None:intergenic 45.0%
! TTTTGTCACTGTGGCGGTAA+TGG + chr2.3:9766004-9766023 MS.gene028875:CDS 45.0%
!! GGCGGTAATGGTAATGGTAA+TGG + chr2.3:9766016-9766035 MS.gene028875:CDS 45.0%
!! GTCTCATTTTTCTTCGCCTC+CGG + chr2.3:9766075-9766094 MS.gene028875:CDS 45.0%
!! GTTGGTGGTGGTGACATTAA+TGG + chr2.3:9766517-9766536 MS.gene028875:CDS 45.0%
!!! AGGGATTTTTTGGGAGAGAG+AGG - chr2.3:9765416-9765435 None:intergenic 45.0%
AATGAAACCGCCGTGGATCA+CGG - chr2.3:9765688-9765707 None:intergenic 50.0%
ACACCGTTACGTGGCTTCAT+CGG - chr2.3:9766118-9766137 None:intergenic 50.0%
AGTCAGAGTCATTGTGTGGG+AGG - chr2.3:9765535-9765554 None:intergenic 50.0%
ATGGACAGTCAGTCCAGTCA+TGG - chr2.3:9765637-9765656 None:intergenic 50.0%
ATTCACCCATCCGAGATCAG+GGG - chr2.3:9766557-9766576 None:intergenic 50.0%
CACGGCGGTTTCATTACTCA+GGG + chr2.3:9765693-9765712 MS.gene028875:CDS 50.0%
CATTCACCCATCCGAGATCA+GGG - chr2.3:9766558-9766577 None:intergenic 50.0%
GAGGGATGTCGATGTCTCTA+AGG - chr2.3:9765436-9765455 None:intergenic 50.0%
TCATTCACCCATCCGAGATC+AGG - chr2.3:9766559-9766578 None:intergenic 50.0%
TCTCCGATGAAGCCACGTAA+CGG + chr2.3:9766112-9766131 MS.gene028875:CDS 50.0%
! CACTGTGGCGGTAATGGTAA+TGG + chr2.3:9766010-9766029 MS.gene028875:CDS 50.0%
! TGTGTGGGAGGAACTTTTGG+AGG - chr2.3:9765523-9765542 None:intergenic 50.0%
! TTTGGGAGAGAGAGGTTGGT+AGG - chr2.3:9765408-9765427 None:intergenic 50.0%
!! TGGGAGGAACTTTTGGAGGA+TGG - chr2.3:9765519-9765538 None:intergenic 50.0%
!!! CTTTTGGAGGATGGTGTCGT+CGG - chr2.3:9765510-9765529 None:intergenic 50.0%
AGCGATGGAACACCGTTACG+TGG - chr2.3:9766127-9766146 None:intergenic 55.0%
AGTCAGTCCAGTCATGGCTC+CGG - chr2.3:9765631-9765650 None:intergenic 55.0%
CCACGGCGGTTTCATTACTC+AGG + chr2.3:9765692-9765711 MS.gene028875:CDS 55.0%
CCTGAGTAATGAAACCGCCG+TGG - chr2.3:9765695-9765714 None:intergenic 55.0%
CGTGGCTTCATCGGAGACAT+AGG - chr2.3:9766109-9766128 None:intergenic 55.0%
GAACCATAGCGTGAGAGCGA+TGG - chr2.3:9766142-9766161 None:intergenic 55.0%
GGCTTCATCGGAGACATAGG+TGG - chr2.3:9766106-9766125 None:intergenic 55.0%
GGGTGAGGAGCTTTCTTGGA+GGG - chr2.3:9765454-9765473 None:intergenic 55.0%
GTCGTCGGAGAAGATGTCGA+CGG - chr2.3:9765495-9765514 None:intergenic 55.0%
GTTCCATCGCTCTCACGCTA+TGG + chr2.3:9766136-9766155 MS.gene028875:CDS 55.0%
TCTTGTCCTGCCCCTGATCT+CGG + chr2.3:9766544-9766563 MS.gene028875:CDS 55.0%
! GGAGACATAGGTGGTGATGC+CGG - chr2.3:9766097-9766116 None:intergenic 55.0%
! TTTTCACCGGGGTGAGCGAA+TGG - chr2.3:9765656-9765675 None:intergenic 55.0%
CGGGTGAGGAGCTTTCTTGG+AGG - chr2.3:9765455-9765474 None:intergenic 60.0%
GACTGTCCATTCGCTCACCC+CGG + chr2.3:9765647-9765666 MS.gene028875:CDS 60.0%
GTCGGAGAAGATGTCGACGG+CGG - chr2.3:9765492-9765511 None:intergenic 60.0%
TCCTGCCCCTGATCTCGGAT+GGG + chr2.3:9766549-9766568 MS.gene028875:CDS 60.0%
! GACATAGGTGGTGATGCCGG+AGG - chr2.3:9766094-9766113 None:intergenic 60.0%
! GTTTGCCCTGAGTATCGCCG+CGG + chr2.3:9765719-9765738 MS.gene028875:CDS 60.0%
!!! ACGGCGGCGAGCTTTTTCAC+CGG - chr2.3:9765669-9765688 None:intergenic 60.0%
AAGCTCGCCGCCGTGATCCA+CGG + chr2.3:9765675-9765694 MS.gene028875:CDS 65.0%
ACCCATCCGAGATCAGGGGC+AGG - chr2.3:9766553-9766572 None:intergenic 65.0%
AGCCACCGCGGCGATACTCA+GGG - chr2.3:9765727-9765746 None:intergenic 65.0%
CGGCGGGTGAGGAGCTTTCT+TGG - chr2.3:9765458-9765477 None:intergenic 65.0%
CTCGTAGCCGGAGCCATGAC+TGG + chr2.3:9765621-9765640 MS.gene028875:CDS 65.0%
GAAACCGCCGTGGATCACGG+CGG - chr2.3:9765685-9765704 None:intergenic 65.0%
GGAGAAGATGTCGACGGCGG+CGG - chr2.3:9765489-9765508 None:intergenic 65.0%
GTCCTGCCCCTGATCTCGGA+TGG + chr2.3:9766548-9766567 MS.gene028875:CDS 65.0%
!!! CGGCGGCGAGCTTTTTCACC+GGG - chr2.3:9765668-9765687 None:intergenic 65.0%
!!! GGCGGCGAGCTTTTTCACCG+GGG - chr2.3:9765667-9765686 None:intergenic 65.0%
CAGCCACCGCGGCGATACTC+AGG - chr2.3:9765728-9765747 None:intergenic 70.0%
CGCCACGGTTACAGCCACCG+CGG - chr2.3:9765739-9765758 None:intergenic 70.0%
GAAGATGTCGACGGCGGCGG+TGG - chr2.3:9765486-9765505 None:intergenic 70.0%
GGCTCCGGCTACGAGTGCAC+CGG - chr2.3:9765616-9765635 None:intergenic 70.0%
TCCGCCGGTGCACTCGTAGC+CGG + chr2.3:9765609-9765628 MS.gene028875:CDS 70.0%
TCCGGCTACGAGTGCACCGG+CGG - chr2.3:9765613-9765632 None:intergenic 70.0%
! TGCCCTGAGTATCGCCGCGG+TGG + chr2.3:9765722-9765741 MS.gene028875:CDS 70.0%
CGCCGCGGTGGCTGTAACCG+TGG + chr2.3:9765734-9765753 MS.gene028875:CDS 75.0%
CTCGCCGCCGTGATCCACGG+CGG + chr2.3:9765678-9765697 MS.gene028875:CDS 75.0%
! CGACGGCGGCGGTGGTGTTG+CGG - chr2.3:9765478-9765497 None:intergenic 75.0%
!! CGGTGGTGTTGCGGCGGGTG+AGG - chr2.3:9765469-9765488 None:intergenic 75.0%
!!! CGGCGGCGGTGGTGTTGCGG+CGG - chr2.3:9765475-9765494 None:intergenic 80.0%
!!! GGCGGCGGTGGTGTTGCGGC+GGG - chr2.3:9765474-9765493 None:intergenic 80.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 9765356 9766591 9765356 ID=MS.gene028875
chr2.3 mRNA 9765356 9766591 9765356 ID=MS.gene028875.t1;Parent=MS.gene028875
chr2.3 exon 9765356 9766591 9765356 ID=MS.gene028875.t1.exon1;Parent=MS.gene028875.t1
chr2.3 CDS 9765356 9766591 9765356 ID=cds.MS.gene028875.t1;Parent=MS.gene028875.t1
Gene Sequence

>MS.gene028875

ATGACTACTATTTGTGCTGAACAACACCAACAACACAAGTTTCATTCTTCCTACCAACCTCTCTCTCCCAAAAAATCCCTTAGAGACATCGACATCCCTCCAAGAAAGCTCCTCACCCGCCGCAACACCACCGCCGCCGTCGACATCTTCTCCGACGACACCATCCTCCAAAAGTTCCTCCCACACAATGACTCTGACTCAGACTCCGATGATCCTTACTCATCAGATCATTTCCGAATGTATGAATTCAAAGTCCGCCGGTGCACTCGTAGCCGGAGCCATGACTGGACTGACTGTCCATTCGCTCACCCCGGTGAAAAAGCTCGCCGCCGTGATCCACGGCGGTTTCATTACTCAGGGACAGTTTGCCCTGAGTATCGCCGCGGTGGCTGTAACCGTGGCGATACTTGTGAATTTGCTCATGGTGTTTTTGAATGCTGGCTTCATCCTGCTAGATACAGAACTGAAGCATGCAAAGATGGTAAAAACTGTAAGAGAAAAGTTTGTTTCTTTGCACACACTCCTCGTCAATTAAGAATCCTTCCTGTTACATCATCATCATCTTCAAATGAACATTTTTCATGCAACAAGAAAAATAACAAGCTTTTGAATAACCATGTTGCTTCAAAATCAAACAATTGTTGTTTGTTTTGTCACTGTGGCGGTAATGGTAATGGTAATGGTGCTAATAATTCTCCAACTTCAACACTTTTTGGTATGTCTCATTTTTCTTCGCCTCCGGCATCACCACCTATGTCTCCGATGAAGCCACGTAACGGTGTTCCATCGCTCTCACGCTATGGTTCTTCGATTAATAGTAACAATCTTCGTTATAGAGACATGCTTATTGATCTTTTGGGTTCTTTTGAAGGGATGAATTTCAATGACGGTTCGTCTTCTTCTTCTTCACCTGTTTCTGCTGCTAAAGCACTTCAGATACAAAACATGGGTTATCTTGAATCTCTTGATGTTCCTGAAGAACAGAATCAGCAACAGTTTATTGTTTCACCTTCTTCTTCTTTTGATCATCAACAACATTTCAATATTCTTTCACAATCTATTCATCAGAATTTGACACCAAGTTTCAATGATGTCGACAATAACATCATTAACAACAATATGAACATGTTTTTGGGAAACAGCGACAACATTAATAAGGTTGTTGGTGGTGGTGACATTAATGGTTTGTCTTGTCCTGCCCCTGATCTCGGATGGGTGAATGAATTGCTGATGTAG
Protein sequence

>MS.gene028875.t1

MTTICAEQHQQHKFHSSYQPLSPKKSLRDIDIPPRKLLTRRNTTAAVDIFSDDTILQKFLPHNDSDSDSDDPYSSDHFRMYEFKVRRCTRSRSHDWTDCPFAHPGEKARRRDPRRFHYSGTVCPEYRRGGCNRGDTCEFAHGVFECWLHPARYRTEACKDGKNCKRKVCFFAHTPRQLRILPVTSSSSSNEHFSCNKKNNKLLNNHVASKSNNCCLFCHCGGNGNGNGANNSPTSTLFGMSHFSSPPASPPMSPMKPRNGVPSLSRYGSSINSNNLRYRDMLIDLLGSFEGMNFNDGSSSSSSPVSAAKALQIQNMGYLESLDVPEEQNQQQFIVSPSSSFDHQQHFNILSQSIHQNLTPSFNDVDNNIINNNMNMFLGNSDNINKVVGGGDINGLSCPAPDLGWVNELLM