AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene029034

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene029034.t1 MTR_2g089000 89.231 260 8 2 1 240 1 260 2.72e-167 462
MS.gene029034.t1 MTR_4g081370 55.649 239 86 7 12 240 9 237 2.17e-77 233
MS.gene029034.t1 MTR_2g082640 54.167 240 81 8 12 240 9 230 2.74e-73 223
MS.gene029034.t1 MTR_4g081370 59.896 192 68 4 58 240 2 193 5.38e-70 213
MS.gene029034.t1 MTR_1g043430 49.412 170 84 2 73 240 77 246 3.04e-44 149
MS.gene029034.t1 MTR_4g075480 44.330 97 53 1 88 184 9 104 1.56e-18 82.8
MS.gene029034.t1 MTR_1g032600 44.565 92 50 1 90 181 82 172 1.72e-18 83.6
MS.gene029034.t1 MTR_4g075480 44.330 97 53 1 88 184 37 132 2.62e-18 82.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene029034.t1 AT5G54680 52.778 216 85 7 36 240 25 234 7.32e-65 201
MS.gene029034.t1 AT1G51070 55.385 195 75 6 56 240 34 226 7.76e-64 199
MS.gene029034.t1 AT1G51070 55.102 196 76 6 55 240 99 292 1.42e-62 197
MS.gene029034.t1 AT4G14410 50.888 169 71 5 78 240 115 277 7.27e-43 146
MS.gene029034.t1 AT4G14410 50.888 169 71 5 78 240 115 277 7.27e-43 146
MS.gene029034.t1 AT4G14410 49.398 166 78 3 78 240 121 283 1.17e-42 146
MS.gene029034.t1 AT3G23210 44.000 225 95 6 31 240 83 291 1.08e-40 141
MS.gene029034.t1 AT3G23210 44.000 225 95 6 31 240 112 320 1.38e-40 142
MS.gene029034.t1 AT3G19860 46.809 94 49 1 88 181 61 153 1.11e-17 81.3
MS.gene029034.t1 AT3G19860 45.918 98 52 1 84 181 4 100 1.32e-17 80.1
MS.gene029034.t1 AT3G19860 45.918 98 52 1 84 181 35 131 1.70e-17 80.5
MS.gene029034.t1 AT4G36060 44.792 96 52 1 86 181 27 121 4.27e-17 78.6
MS.gene029034.t1 AT4G36060 44.792 96 52 1 86 181 27 121 4.39e-17 78.6
MS.gene029034.t1 AT4G36060 44.792 96 52 1 86 181 45 139 9.49e-17 77.8
MS.gene029034.t1 AT4G36060 44.792 96 52 1 86 181 45 139 1.04e-16 77.8

Find 66 sgRNAs with CRISPR-Local

Find 145 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGACATGATCTAAAGGTTTA+TGG 0.147703 2.4:+11928857 MS.gene029034:intron
TCTCAGCTTCATTTCTTAAT+TGG 0.176160 2.4:-11928962 None:intergenic
TATTTCTGCTGCTGATTTCA+TGG 0.212247 2.4:+11927773 MS.gene029034:CDS
TCCATTTGGCTCTATGATTA+TGG 0.214517 2.4:+11927735 MS.gene029034:CDS
TAGGCTAACCTTGTCAGTTT+TGG 0.219471 2.4:-11928913 None:intergenic
TTACAACAATATTATGGATA+TGG 0.261534 2.4:+11927695 None:intergenic
CCACAGGTGGTTCCTCCATT+TGG 0.271652 2.4:+11927721 MS.gene029034:CDS
CTCAGCTTCATTTCTTAATT+GGG 0.281253 2.4:-11928961 None:intergenic
CACTTTCTCACGACCTGCCT+TGG 0.343619 2.4:-11928742 None:intergenic
TATTTCAAAGTCACCTCATA+TGG 0.359098 2.4:-11927878 None:intergenic
ATGCCTTTCATTGGTTATCC+TGG 0.370469 2.4:+11929944 MS.gene029034:CDS
ATATATTTGCAGCATGGAAA+TGG 0.370622 2.4:+11928522 MS.gene029034:intron
TGCTAACCACTTTAAGCAAC+TGG 0.372348 2.4:-11930034 None:intergenic
CTCGAACCGCATCATTTAAT+AGG 0.378908 2.4:-11928932 None:intergenic
CTGCTGCTCCTGCTTTCACC+TGG 0.384655 2.4:+11927808 MS.gene029034:CDS
CACAAGCTGATGCCTTTCAT+TGG 0.397178 2.4:+11929935 MS.gene029034:CDS
AACTGCCACATTGAAATTCC+AGG 0.421296 2.4:-11929962 None:intergenic
AAGATATATTACCGCTTTGA+AGG 0.433191 2.4:-11928580 None:intergenic
GAAGCTAGACAAAGAAAAGT+TGG 0.439259 2.4:+11929835 MS.gene029034:CDS
TTCACTGGATTCAACTGTAC+TGG 0.450801 2.4:+11928549 MS.gene029034:CDS
CAAAGAAAAGTTGGAGCAGC+AGG 0.452011 2.4:+11929844 MS.gene029034:CDS
ACCCTCCTTCCTCCCATATG+AGG 0.459345 2.4:+11927865 MS.gene029034:CDS
TCCTTTAGCAGCCATGGCAT+TGG 0.463282 2.4:-11929900 None:intergenic
CATGGAAATGGAATATTCAC+TGG 0.465025 2.4:+11928534 MS.gene029034:CDS
GATTCAACTGTACTGGAAAA+CGG 0.474684 2.4:+11928556 MS.gene029034:CDS
AAGCAACTGGAGGTCGAAGC+AGG 0.492222 2.4:-11930021 None:intergenic
TCCAATGCCATGGCTGCTAA+AGG 0.493863 2.4:+11929899 MS.gene029034:CDS
TGAGGCATCCAGGTGAAAGC+AGG 0.497970 2.4:-11927816 None:intergenic
ATGGCTGCTAAAGGACCAAC+TGG 0.500289 2.4:+11929908 MS.gene029034:CDS
GAAGGGATAAATTGAATGAC+AGG 0.502758 2.4:+11928766 MS.gene029034:CDS
AGTTGGTCCTTTAGCAGCCA+TGG 0.520788 2.4:-11929906 None:intergenic
AGACTGAGGCTGAGGCATCC+AGG 0.526908 2.4:-11927826 None:intergenic
GCCATAATCATAGAGCCAAA+TGG 0.530360 2.4:-11927736 None:intergenic
ATCAGCTTGTGGTTACCAGT+TGG 0.540943 2.4:-11929923 None:intergenic
AGATATATTACCGCTTTGAA+GGG 0.546831 2.4:-11928579 None:intergenic
ATTTCAAAGTCACCTCATAT+GGG 0.549756 2.4:-11927877 None:intergenic
ACCTCATATGGGAGGAAGGA+GGG 0.560123 2.4:-11927866 None:intergenic
CTGTTACTTTAGGTTAAGGA+CGG 0.568187 2.4:+11928701 MS.gene029034:intron
TGAGTTTGAGACTGAGGCTG+AGG 0.571581 2.4:-11927834 None:intergenic
TAGCTTCCTCTCCAATGCCA+TGG 0.572853 2.4:+11929889 MS.gene029034:CDS
AAGCTGAGAGGCTCAAGGAA+AGG 0.587154 2.4:+11928976 MS.gene029034:CDS
ATTCCAGGATAACCAATGAA+AGG 0.593758 2.4:-11929947 None:intergenic
TATGCATCTAGCTCCAAGGC+AGG 0.594326 2.4:+11928729 MS.gene029034:CDS
TGCTGCAGTTGATACATCAC+AGG 0.594554 2.4:+11929994 MS.gene029034:CDS
ATGGATATGGATTCCACAGG+TGG 0.594619 2.4:+11927708 MS.gene029034:CDS
CAATGAAAGGCATCAGCTTG+TGG 0.597079 2.4:-11929934 None:intergenic
AGTCACCTCATATGGGAGGA+AGG 0.599006 2.4:-11927870 None:intergenic
AAATGAAGCTGAGAGGCTCA+AGG 0.603831 2.4:+11928971 MS.gene029034:CDS
CCAAATGGAGGAACCACCTG+TGG 0.607270 2.4:-11927721 None:intergenic
ATCATATGCATCTAGCTCCA+AGG 0.614949 2.4:+11928725 MS.gene029034:CDS
TGTGATGTATCAACTGCAGC+AGG 0.617840 2.4:-11929992 None:intergenic
GGTTAGCCTATTAAATGATG+CGG 0.622213 2.4:+11928926 MS.gene029034:CDS
ATTAAATGATGCGGTTCGAG+TGG 0.625785 2.4:+11928935 MS.gene029034:CDS
ATTATGGATATGGATTCCAC+AGG 0.629790 2.4:+11927705 None:intergenic
TAGCAGCCATGGCATTGGAG+AGG 0.631338 2.4:-11929895 None:intergenic
AGGTCGTGAGAAAGTGCGAA+GGG 0.647351 2.4:+11928749 MS.gene029034:CDS
ATGATATGAGTTTGAGACTG+AGG 0.651321 2.4:-11927840 None:intergenic
CACCTCATATGGGAGGAAGG+AGG 0.652615 2.4:-11927867 None:intergenic
CAGGTCGTGAGAAAGTGCGA+AGG 0.654075 2.4:+11928748 MS.gene029034:CDS
TCAAAGTCACCTCATATGGG+AGG 0.655796 2.4:-11927874 None:intergenic
TAACCACTTTAAGCAACTGG+AGG 0.675285 2.4:-11930031 None:intergenic
TACGCTGCCCAAAACTGACA+AGG 0.677310 2.4:+11928905 MS.gene029034:CDS
ATAATCATAGAGCCAAATGG+AGG 0.683773 2.4:-11927733 None:intergenic
GTTATCCTGGAATTTCAATG+TGG 0.692809 2.4:+11929957 MS.gene029034:CDS
TGGAAAACGGCCCTTCAAAG+CGG 0.713168 2.4:+11928569 MS.gene029034:CDS
AATTAAGAAATGAAGCTGAG+AGG 0.714845 2.4:+11928964 MS.gene029034:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAGTTATTTCTTAAATTTAT+AGG + chr2.4:11929684-11929703 MS.gene029034:intron 10.0%
!! AAAATAAATAACTAGTTGAT+GGG - chr2.4:11929367-11929386 None:intergenic 15.0%
!! ATATAAAAGATAGATAAAGA+CGG - chr2.4:11929436-11929455 None:intergenic 15.0%
!! TAAAATAAATAACTAGTTGA+TGG - chr2.4:11929368-11929387 None:intergenic 15.0%
!! TAAGTTAAACAATAAATTTG+AGG + chr2.4:11928036-11928055 MS.gene029034:intron 15.0%
!! AAGTAAACTTACTTATACAA+GGG - chr2.4:11929183-11929202 None:intergenic 20.0%
!! AGAAAAAGTTAAAGAACTTA+AGG + chr2.4:11929013-11929032 MS.gene029034:CDS 20.0%
!! ATAGTAAACTAACTAATATG+AGG - chr2.4:11929472-11929491 None:intergenic 20.0%
!! ATTACTTTATATTTGTAGCT+TGG + chr2.4:11928145-11928164 MS.gene029034:intron 20.0%
!! TAAAGTTATGTTTCCTTTAA+AGG + chr2.4:11929775-11929794 MS.gene029034:intron 20.0%
!! TAGTAAACTAACTAATATGA+GGG - chr2.4:11929471-11929490 None:intergenic 20.0%
!!! ATTTAAGAAATAACTTGTTC+CGG - chr2.4:11929680-11929699 None:intergenic 20.0%
!!! TTTTTCGTATCTTATTATAG+TGG + chr2.4:11929039-11929058 MS.gene029034:intron 20.0%
! AAAATCAATTGTAGAATCTG+CGG + chr2.4:11928062-11928081 MS.gene029034:intron 25.0%
! AGTAAACTTACTTATACAAG+GGG - chr2.4:11929182-11929201 None:intergenic 25.0%
! CAAGTAAACTTACTTATACA+AGG - chr2.4:11929184-11929203 None:intergenic 25.0%
! GTAATAATCATGAGAAAACT+TGG - chr2.4:11928130-11928149 None:intergenic 25.0%
! TAAGATGATAACTAGTAGAT+AGG - chr2.4:11929227-11929246 None:intergenic 25.0%
! TTATATTTGTAGCTTGGAAA+TGG + chr2.4:11928151-11928170 MS.gene029034:intron 25.0%
! TTCAATTTGACATGATCTAA+AGG + chr2.4:11928850-11928869 MS.gene029034:intron 25.0%
! TTGTAAAAGTTGTATACTGT+TGG + chr2.4:11928611-11928630 MS.gene029034:intron 25.0%
!! ACAGTATACAACTTTTACAA+AGG - chr2.4:11928611-11928630 None:intergenic 25.0%
!! CTTCAAGTTAGAATCAATTA+TGG + chr2.4:11928385-11928404 MS.gene029034:intron 25.0%
!!! TAATATGCAACTGTTACTTT+AGG + chr2.4:11928691-11928710 MS.gene029034:intron 25.0%
AAATCAATTGTAGAATCTGC+GGG + chr2.4:11928063-11928082 MS.gene029034:intron 30.0%
AAGATATATTACCGCTTTGA+AGG - chr2.4:11928583-11928602 None:intergenic 30.0%
AATTAAGAAATGAAGCTGAG+AGG + chr2.4:11928964-11928983 MS.gene029034:CDS 30.0%
ATATATTTGCAGCATGGAAA+TGG + chr2.4:11928522-11928541 MS.gene029034:intron 30.0%
ATGTGAACAAGTATGAAACA+TGG + chr2.4:11929749-11929768 MS.gene029034:intron 30.0%
ATTTCAAAGTCACCTCATAT+GGG - chr2.4:11927880-11927899 None:intergenic 30.0%
CAAGTTAGAATCAATTATGG+TGG + chr2.4:11928388-11928407 MS.gene029034:intron 30.0%
CTATCTATATATTTGCAGCA+TGG + chr2.4:11928516-11928535 MS.gene029034:intron 30.0%
CTCAGCTTCATTTCTTAATT+GGG - chr2.4:11928964-11928983 None:intergenic 30.0%
GATGCTGCAATATAAATTTG+AGG + chr2.4:11928327-11928346 MS.gene029034:intron 30.0%
TATTTCAAAGTCACCTCATA+TGG - chr2.4:11927881-11927900 None:intergenic 30.0%
TCTCAGCTTCATTTCTTAAT+TGG - chr2.4:11928965-11928984 None:intergenic 30.0%
TGACATGATCTAAAGGTTTA+TGG + chr2.4:11928857-11928876 MS.gene029034:intron 30.0%
! AGATATATTACCGCTTTGAA+GGG - chr2.4:11928211-11928230 None:intergenic 30.0%
!! TATTTTAGAAGCTCTGCATA+TGG - chr2.4:11929588-11929607 None:intergenic 30.0%
!!! TGATTTTGTGATGTTGATTC+TGG + chr2.4:11927975-11927994 MS.gene029034:intron 30.0%
AACTTTGCTTACTCCAAAAG+TGG + chr2.4:11928439-11928458 MS.gene029034:intron 35.0%
AGAATAGTCAATCACAGAGA+GGG - chr2.4:11928476-11928495 None:intergenic 35.0%
ATAATCATAGAGCCAAATGG+AGG - chr2.4:11927736-11927755 None:intergenic 35.0%
ATCAAACACGCGCAAATTTA+AGG - chr2.4:11927933-11927952 None:intergenic 35.0%
ATTCCAGGATAACCAATGAA+AGG - chr2.4:11929950-11929969 None:intergenic 35.0%
CATGGAAATGGAATATTCAC+TGG + chr2.4:11928534-11928553 MS.gene029034:CDS 35.0%
CTCACTTGATTCAACTGTAA+TGG + chr2.4:11928178-11928197 MS.gene029034:intron 35.0%
CTTACTTATACAAGGGGTTT+CGG - chr2.4:11929176-11929195 None:intergenic 35.0%
GAAGCTAGACAAAGAAAAGT+TGG + chr2.4:11929835-11929854 MS.gene029034:CDS 35.0%
GAAGGGATAAATTGAATGAC+AGG + chr2.4:11928766-11928785 MS.gene029034:CDS 35.0%
GAGATATATTACCGCTTTGA+AGG - chr2.4:11928212-11928231 None:intergenic 35.0%
GATTCAACTGTACTGGAAAA+CGG + chr2.4:11928556-11928575 MS.gene029034:CDS 35.0%
GCACGTAGACTAAATTAAGA+GGG - chr2.4:11929325-11929344 None:intergenic 35.0%
GTTATCCTGGAATTTCAATG+TGG + chr2.4:11929957-11929976 MS.gene029034:CDS 35.0%
TCAAACACGCGCAAATTTAA+GGG - chr2.4:11927932-11927951 None:intergenic 35.0%
TCTTTCTTCTCAGCCTTTAA+AGG - chr2.4:11929791-11929810 None:intergenic 35.0%
TGCACGTAGACTAAATTAAG+AGG - chr2.4:11929326-11929345 None:intergenic 35.0%
TTACTTATACAAGGGGTTTC+GGG - chr2.4:11929175-11929194 None:intergenic 35.0%
! ATGATATGAGTTTGAGACTG+AGG - chr2.4:11927843-11927862 None:intergenic 35.0%
!! AAAATACTCTGGAGTGGATT+TGG + chr2.4:11929602-11929621 MS.gene029034:intron 35.0%
!! CTGTTACTTTAGGTTAAGGA+CGG + chr2.4:11928701-11928720 MS.gene029034:intron 35.0%
!! GCAACTGTTACTTTAGGTTA+AGG + chr2.4:11928697-11928716 MS.gene029034:intron 35.0%
!! GGTTAGCCTATTAAATGATG+CGG + chr2.4:11928926-11928945 MS.gene029034:CDS 35.0%
!! TATTTCTGCTGCTGATTTCA+TGG + chr2.4:11927773-11927792 MS.gene029034:CDS 35.0%
!! TCCATTTGGCTCTATGATTA+TGG + chr2.4:11927735-11927754 MS.gene029034:CDS 35.0%
AACTGCCACATTGAAATTCC+AGG - chr2.4:11929965-11929984 None:intergenic 40.0%
ATTAAATGATGCGGTTCGAG+TGG + chr2.4:11928935-11928954 MS.gene029034:CDS 40.0%
CCAATGTGAACCTTGAGATA+TGG + chr2.4:11929505-11929524 MS.gene029034:intron 40.0%
CCATATCTCAAGGTTCACAT+TGG - chr2.4:11929508-11929527 None:intergenic 40.0%
CTCGAACCGCATCATTTAAT+AGG - chr2.4:11928935-11928954 None:intergenic 40.0%
GAGAATAGTCAATCACAGAG+AGG - chr2.4:11928477-11928496 None:intergenic 40.0%
GCCATAATCATAGAGCCAAA+TGG - chr2.4:11927739-11927758 None:intergenic 40.0%
TAAGTTTACTTGCACCTGTG+CGG + chr2.4:11929192-11929211 MS.gene029034:intron 40.0%
TACTTATACAAGGGGTTTCG+GGG - chr2.4:11929174-11929193 None:intergenic 40.0%
TAGATAAAGATGTCGCCATG+TGG - chr2.4:11929129-11929148 None:intergenic 40.0%
TGGAAAGTAACCCTTCAAAG+CGG + chr2.4:11928198-11928217 MS.gene029034:intron 40.0%
TTCACTGGATTCAACTGTAC+TGG + chr2.4:11928549-11928568 MS.gene029034:CDS 40.0%
! ACAAAGGTCTAGTTCAGAGA+TGG + chr2.4:11929634-11929653 MS.gene029034:intron 40.0%
! AGGCTAACCTTGTCAGTTTT+GGG - chr2.4:11928915-11928934 None:intergenic 40.0%
! ATCATATGCATCTAGCTCCA+AGG + chr2.4:11928725-11928744 MS.gene029034:CDS 40.0%
! ATGCCTTTCATTGGTTATCC+TGG + chr2.4:11929944-11929963 MS.gene029034:CDS 40.0%
! TAGGCTAACCTTGTCAGTTT+TGG - chr2.4:11928916-11928935 None:intergenic 40.0%
!! GAAATAACTTGTTCCGGACT+TGG - chr2.4:11929674-11929693 None:intergenic 40.0%
!! GCAGAGCTTCTAAAATACTC+TGG + chr2.4:11929591-11929610 MS.gene029034:intron 40.0%
!! GCTTCTAAAATACTCTGGAG+TGG + chr2.4:11929596-11929615 MS.gene029034:intron 40.0%
!! TAGATAAAGACGGTGTCATG+TGG - chr2.4:11929426-11929445 None:intergenic 40.0%
AAATGAAGCTGAGAGGCTCA+AGG + chr2.4:11928971-11928990 MS.gene029034:CDS 45.0%
AGCATCTATATTGTGCCACG+TGG + chr2.4:11929262-11929281 MS.gene029034:intron 45.0%
ATCAGCTTGTGGTTACCAGT+TGG - chr2.4:11929926-11929945 None:intergenic 45.0%
ATGGATATGGATTCCACAGG+TGG + chr2.4:11927708-11927727 MS.gene029034:CDS 45.0%
CAAAGAAAAGTTGGAGCAGC+AGG + chr2.4:11929844-11929863 MS.gene029034:CDS 45.0%
CACAAGCTGATGCCTTTCAT+TGG + chr2.4:11929935-11929954 MS.gene029034:CDS 45.0%
GATTTGGACTTGTGGCACAA+AGG + chr2.4:11929618-11929637 MS.gene029034:intron 45.0%
GCACAACGTGGATAACTGAA+CGG - chr2.4:11929404-11929423 None:intergenic 45.0%
GTGTGCTCAACCATATCTCA+AGG - chr2.4:11929518-11929537 None:intergenic 45.0%
TCAAAGTCACCTCATATGGG+AGG - chr2.4:11927877-11927896 None:intergenic 45.0%
TGTGATGTATCAACTGCAGC+AGG - chr2.4:11929995-11930014 None:intergenic 45.0%
! TGCTGCAGTTGATACATCAC+AGG + chr2.4:11929994-11930013 MS.gene029034:CDS 45.0%
!! CAATGAAAGGCATCAGCTTG+TGG - chr2.4:11929937-11929956 None:intergenic 45.0%
AAGCTGAGAGGCTCAAGGAA+AGG + chr2.4:11928976-11928995 MS.gene029034:CDS 50.0%
ACCTCATATGGGAGGAAGGA+GGG - chr2.4:11927869-11927888 None:intergenic 50.0%
AGCACACATAGACCTTGCCA+CGG + chr2.4:11929531-11929550 MS.gene029034:intron 50.0%
AGTCACCTCATATGGGAGGA+AGG - chr2.4:11927873-11927892 None:intergenic 50.0%
AGTTGGTCCTTTAGCAGCCA+TGG - chr2.4:11929909-11929928 None:intergenic 50.0%
ATGGCTGCTAAAGGACCAAC+TGG + chr2.4:11929908-11929927 MS.gene029034:CDS 50.0%
CTAGTTCAGAGATGGACCGT+GGG + chr2.4:11929642-11929661 MS.gene029034:intron 50.0%
GTTCTCCATGTTGTGCCACA+TGG + chr2.4:11929111-11929130 MS.gene029034:intron 50.0%
TACGCTGCCCAAAACTGACA+AGG + chr2.4:11928905-11928924 MS.gene029034:CDS 50.0%
TAGCTTCCTCTCCAATGCCA+TGG + chr2.4:11929889-11929908 MS.gene029034:CDS 50.0%
TCCAATGCCATGGCTGCTAA+AGG + chr2.4:11929899-11929918 MS.gene029034:CDS 50.0%
TCCTTTAGCAGCCATGGCAT+TGG - chr2.4:11929903-11929922 None:intergenic 50.0%
TCGATAAAGACGTTGCCACG+TGG - chr2.4:11929280-11929299 None:intergenic 50.0%
TGGAAAACGGCCCTTCAAAG+CGG + chr2.4:11928569-11928588 MS.gene029034:CDS 50.0%
! AATCACAGAGAGGGCGTGTT+TGG - chr2.4:11928467-11928486 None:intergenic 50.0%
! ACGTGCACATGTGCTGATCA+CGG + chr2.4:11929339-11929358 MS.gene029034:intron 50.0%
! AGGTCGTGAGAAAGTGCGAA+GGG + chr2.4:11928749-11928768 MS.gene029034:CDS 50.0%
! CTGGAGTGGATTTGGACTTG+TGG + chr2.4:11929610-11929629 MS.gene029034:intron 50.0%
! TATGCATCTAGCTCCAAGGC+AGG + chr2.4:11928729-11928748 MS.gene029034:CDS 50.0%
! TCTAGTTCAGAGATGGACCG+TGG + chr2.4:11929641-11929660 MS.gene029034:intron 50.0%
! TGAGTTTGAGACTGAGGCTG+AGG - chr2.4:11927837-11927856 None:intergenic 50.0%
!! GGCGTGTTTGGTTCCACTTT+TGG - chr2.4:11928455-11928474 None:intergenic 50.0%
!!! TCAGTTTTGGGCAGCGTATC+AGG - chr2.4:11928903-11928922 None:intergenic 50.0%
AAACGATGATCTGCACGCCG+TGG - chr2.4:11929551-11929570 None:intergenic 55.0%
AAGCAACTGGAGGTCGAAGC+AGG - chr2.4:11930024-11930043 None:intergenic 55.0%
ACCCTCCTTCCTCCCATATG+AGG + chr2.4:11927865-11927884 MS.gene029034:CDS 55.0%
ACGGCGTGCAGATCATCGTT+TGG + chr2.4:11929550-11929569 MS.gene029034:intron 55.0%
ACTTGTTCCGGACTTGGCCA+CGG - chr2.4:11929668-11929687 None:intergenic 55.0%
ATAGGACCTATGTGCCGCAC+AGG - chr2.4:11929209-11929228 None:intergenic 55.0%
CACCTCATATGGGAGGAAGG+AGG - chr2.4:11927870-11927889 None:intergenic 55.0%
CACTTTCTCACGACCTGCCT+TGG - chr2.4:11928745-11928764 None:intergenic 55.0%
CCAAATGGAGGAACCACCTG+TGG - chr2.4:11927724-11927743 None:intergenic 55.0%
CCACAGGTGGTTCCTCCATT+TGG + chr2.4:11927721-11927740 MS.gene029034:CDS 55.0%
TGTCGCCATGTGGCACAACA+TGG - chr2.4:11929119-11929138 None:intergenic 55.0%
! CAGGTCGTGAGAAAGTGCGA+AGG + chr2.4:11928748-11928767 MS.gene029034:CDS 55.0%
! CGTGCACATGTGCTGATCAC+GGG + chr2.4:11929340-11929359 MS.gene029034:intron 55.0%
! TAGCAGCCATGGCATTGGAG+AGG - chr2.4:11929898-11929917 None:intergenic 55.0%
! TGAGGCATCCAGGTGAAAGC+AGG - chr2.4:11927819-11927838 None:intergenic 55.0%
ATGATCTGCACGCCGTGGCA+AGG - chr2.4:11929546-11929565 None:intergenic 60.0%
CTGCTGCTCCTGCTTTCACC+TGG + chr2.4:11927808-11927827 MS.gene029034:CDS 60.0%
CTTGCACCTGTGCGGCACAT+AGG + chr2.4:11929200-11929219 MS.gene029034:intron 60.0%
! AGACTGAGGCTGAGGCATCC+AGG - chr2.4:11927829-11927848 None:intergenic 60.0%
!! CGGTGTCATGTGGCACAACG+TGG - chr2.4:11929416-11929435 None:intergenic 60.0%
CAGAGATGGACCGTGGGCCG+TGG + chr2.4:11929648-11929667 MS.gene029034:intron 70.0%
CCGGACTTGGCCACGGCCCA+CGG - chr2.4:11929661-11929680 None:intergenic 75.0%
CCGTGGGCCGTGGCCAAGTC+CGG + chr2.4:11929658-11929677 MS.gene029034:intron 75.0%


Chromosome Type Strat End Strand Name
chr2.4 gene 11927708 11930045 11927708 ID=MS.gene029034
chr2.4 mRNA 11927708 11930045 11927708 ID=MS.gene029034.t1;Parent=MS.gene029034
chr2.4 exon 11927708 11927886 11927708 ID=MS.gene029034.t1.exon1;Parent=MS.gene029034.t1
chr2.4 CDS 11927708 11927886 11927708 ID=cds.MS.gene029034.t1;Parent=MS.gene029034.t1
chr2.4 exon 11928534 11928590 11928534 ID=MS.gene029034.t1.exon2;Parent=MS.gene029034.t1
chr2.4 CDS 11928534 11928590 11928534 ID=cds.MS.gene029034.t1;Parent=MS.gene029034.t1
chr2.4 exon 11928713 11928787 11928713 ID=MS.gene029034.t1.exon3;Parent=MS.gene029034.t1
chr2.4 CDS 11928713 11928787 11928713 ID=cds.MS.gene029034.t1;Parent=MS.gene029034.t1
chr2.4 exon 11928872 11929034 11928872 ID=MS.gene029034.t1.exon4;Parent=MS.gene029034.t1
chr2.4 CDS 11928872 11929034 11928872 ID=cds.MS.gene029034.t1;Parent=MS.gene029034.t1
chr2.4 exon 11929797 11930045 11929797 ID=MS.gene029034.t1.exon5;Parent=MS.gene029034.t1
chr2.4 CDS 11929797 11930045 11929797 ID=cds.MS.gene029034.t1;Parent=MS.gene029034.t1
Gene Sequence

>MS.gene029034

ATGGATATGGATTCCACAGGTGGTTCCTCCATTTGGCTCTATGATTATGGCTATGATGATATATCTATTTCTGCTGCTGATTTCATGGCTTCTGACTCTTCTGCTGCTCCTGCTTTCACCTGGATGCCTCAGCCTCAGTCTCAAACTCATATCATCAACCCTCCTTCCTCCCATATGAGGTGACTTTGAAATATTTGTTGTCTTATTTAAGAAGCTGAAATCCCTTAAATTTGCGCGTGTTTGATTCTGCGTTGATTTTGAATGAATTGATTTTGTGATGTTGATTCTGGTTAAAAGTGTGTCGAATGCATGATAATTCATGTAAAAGTAAGTTAAACAATAAATTTGAGGCTAAAAATCAATTGTAGAATCTGCGGGAAAAATCTATTTTAAACATTTCAAAGTCAATTTTGTAAATTCCAAGTTTTCTCATGATTATTACTTTATATTTGTAGCTTGGAAATGGATTACTCACTTGATTCAACTGTAATGGAAAGTAACCCTTCAAAGCGGTAATATATCTCTTTCTTGTATTTGTAAAAGTTGATTTTGAATGAATTGATTTTATAATATTGATTCTCGTCAAAAGTGAAATGAATGTAAAGTGATTTATGTTATTGATGCTGCAATATAAATTTGAGGCTAAAAATCATTTGTAGAAACTAAAACTTTAAATTCTTCAAGTTAGAATCAATTATGGTGGTAAAATTAATTTAAACACTTCTTGAATCAACTTTGCTTACTCCAAAAGTGGAACCAAACACGCCCTCTCTGTGATTGACTATTCTCAGATTTCTCATGATGATTACTATCTATATATTTGCAGCATGGAAATGGAATATTCACTGGATTCAACTGTACTGGAAAACGGCCCTTCAAAGCGGTAATATATCTTCTTTGCCTTTGTAAAAGTTGTATACTGTTGGAATTCAACTGAGTGATTAATCTCACATCTACTAGAAAATAGAAATAAGCTAAATGAATAATATGCAACTGTTACTTTAGGTTAAGGACGGAATCATATGCATCTAGCTCCAAGGCAGGTCGTGAGAAAGTGCGAAGGGATAAATTGAATGACAGGTTTGCTATTATTTTGCAACTTTCTGATTTTGTTTATGCTTCTAAACTAAATCTCATGCTTTTTCAATTTGACATGATCTAAAGGTTTATGGAATTGAGTTCTGTCTTAGAGCCTGATACGCTGCCCAAAACTGACAAGGTTAGCCTATTAAATGATGCGGTTCGAGTGGTGACCCAATTAAGAAATGAAGCTGAGAGGCTCAAGGAAAGGAATGATGAATTGCGAGAAAAAGTTAAAGAACTTAAGGTGATTTTTCGTATCTTATTATAGTGGTTATTTATTTATTTATTTTATTATTATTATCTTTATAAAACACAATTCAGTTCTCCATGTTGTGCCACATGGCGACATCTTTATCTATCTTTTTGTATACGAAGCGAAACCCCGAAACCCCTTGTATAAGTAAGTTTACTTGCACCTGTGCGGCACATAGGTCCTATCTACTAGTTATCATCTTAATAAACACACAATTTAGCATCTATATTGTGCCACGTGGCAACGTCTTTATCGATCTTTTATACACGAAATCAAAACCCTCTTAATTTAGTCTACGTGCACATGTGCTGATCACGGGTCCCATCAACTAGTTATTTATTTTATTTTTATAAAACACCGTTCAGTTATCCACGTTGTGCCACATGACACCGTCTTTATCTATCTTTTATATAAGAAGCGAATTCCCTCATATTAGTTAGTTTACTATACTTAGTTATAATCCAATGTGAACCTTGAGATATGGTTGAGCACACATAGACCTTGCCACGGCGTGCAGATCATCGTTTGGTCGATTGCACAACCATATGCAGAGCTTCTAAAATACTCTGGAGTGGATTTGGACTTGTGGCACAAAGGTCTAGTTCAGAGATGGACCGTGGGCCGTGGCCAAGTCCGGAACAAGTTATTTCTTAAATTTATAGGTTGCTATGCTTTATATTTCTCTAAATAAGTAAGTGACAAATGATGTGAACAAGTATGAAACATGGTTCTAAAGTTATGTTTCCTTTAAAGGCTGAGAAGAAAGAGCTTCGTGATGAGAAAAATAAGCTGAAGCTAGACAAAGAAAAGTTGGAGCAGCAGGTGAAATTATCAAGTGTACAGTCTAGCTTCCTCTCCAATGCCATGGCTGCTAAAGGACCAACTGGTAACCACAAGCTGATGCCTTTCATTGGTTATCCTGGAATTTCAATGTGGCAGTTTATGTCACCTGCTGCAGTTGATACATCACAGGATCACCTGCTTCGACCTCCAGTTGCTTAA
Protein sequence

>MS.gene029034.t1

MDMDSTGGSSIWLYDYGYDDISISAADFMASDSSAAPAFTWMPQPQSQTHIINPPSSHMSMEMEYSLDSTVLENGPSKRLRTESYASSSKAGREKVRRDKLNDRFMELSSVLEPDTLPKTDKVSLLNDAVRVVTQLRNEAERLKERNDELREKVKELKAEKKELRDEKNKLKLDKEKLEQQVKLSSVQSSFLSNAMAAKGPTGNHKLMPFIGYPGISMWQFMSPAAVDTSQDHLLRPPVA