Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029041.t1 | XP_024631763.1 | 93.8 | 433 | 27 | 0 | 1 | 433 | 78 | 510 | 6.90E-212 | 746.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029041.t1 | Q9LJ44 | 42.7 | 431 | 170 | 12 | 1 | 428 | 1 | 357 | 2.2e-49 | 198.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029041.t1 | G7IKL4 | 92.1 | 433 | 26 | 1 | 1 | 433 | 97 | 521 | 1.6e-205 | 724.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene029041.t1 | TR | Others |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029041.t1 | MTR_2g088900 | 92.841 | 433 | 23 | 1 | 1 | 433 | 97 | 521 | 0.0 | 832 |
| MS.gene029041.t1 | MTR_5g069480 | 34.240 | 441 | 241 | 13 | 1 | 429 | 1 | 404 | 1.78e-58 | 197 |
| MS.gene029041.t1 | MTR_3g082630 | 33.333 | 447 | 238 | 14 | 1 | 429 | 1 | 405 | 7.21e-57 | 193 |
| MS.gene029041.t1 | MTR_5g069480 | 33.929 | 280 | 170 | 7 | 1 | 278 | 1 | 267 | 1.12e-36 | 136 |
| MS.gene029041.t1 | MTR_7g083540 | 28.319 | 452 | 227 | 17 | 1 | 422 | 1 | 385 | 1.34e-32 | 127 |
| MS.gene029041.t1 | MTR_1g109350 | 44.231 | 104 | 57 | 1 | 1 | 104 | 1 | 103 | 4.39e-22 | 97.1 |
| MS.gene029041.t1 | MTR_7g108150 | 44.000 | 100 | 55 | 1 | 5 | 103 | 20 | 119 | 4.18e-20 | 91.7 |
| MS.gene029041.t1 | MTR_3g105710 | 45.122 | 82 | 45 | 0 | 4 | 85 | 5 | 86 | 6.88e-14 | 72.4 |
| MS.gene029041.t1 | MTR_4g128930 | 39.024 | 82 | 50 | 0 | 4 | 85 | 21 | 102 | 2.08e-12 | 68.6 |
| MS.gene029041.t1 | MTR_1g013450 | 39.024 | 82 | 50 | 0 | 4 | 85 | 5 | 86 | 4.98e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029041.t1 | AT3G21880 | 38.283 | 431 | 189 | 13 | 1 | 428 | 5 | 361 | 1.35e-81 | 256 |
| MS.gene029041.t1 | AT3G21880 | 38.283 | 431 | 189 | 13 | 1 | 428 | 5 | 361 | 1.35e-81 | 256 |
| MS.gene029041.t1 | AT3G21880 | 38.283 | 431 | 189 | 13 | 1 | 428 | 1 | 357 | 1.57e-81 | 256 |
| MS.gene029041.t1 | AT4G15250 | 36.636 | 434 | 165 | 11 | 1 | 430 | 1 | 328 | 5.90e-71 | 227 |
| MS.gene029041.t1 | AT5G48250 | 32.662 | 447 | 203 | 13 | 1 | 429 | 1 | 367 | 3.19e-57 | 193 |
| MS.gene029041.t1 | AT3G07650 | 32.892 | 453 | 193 | 15 | 1 | 429 | 1 | 366 | 1.14e-54 | 186 |
| MS.gene029041.t1 | AT3G07650 | 32.892 | 453 | 193 | 15 | 1 | 429 | 1 | 366 | 1.14e-54 | 186 |
| MS.gene029041.t1 | AT3G07650 | 32.892 | 453 | 193 | 15 | 1 | 429 | 1 | 366 | 1.14e-54 | 186 |
| MS.gene029041.t1 | AT3G07650 | 32.892 | 453 | 193 | 15 | 1 | 429 | 1 | 366 | 1.14e-54 | 186 |
| MS.gene029041.t1 | AT1G68190 | 45.113 | 133 | 65 | 2 | 1 | 129 | 10 | 138 | 1.54e-26 | 110 |
| MS.gene029041.t1 | AT1G68190 | 45.113 | 133 | 65 | 2 | 1 | 129 | 10 | 138 | 1.54e-26 | 110 |
| MS.gene029041.t1 | AT1G68190 | 45.113 | 133 | 65 | 2 | 1 | 129 | 39 | 167 | 2.54e-26 | 110 |
| MS.gene029041.t1 | AT2G33500 | 45.098 | 102 | 54 | 1 | 5 | 104 | 12 | 113 | 2.70e-23 | 101 |
| MS.gene029041.t1 | AT2G33500 | 71.111 | 45 | 13 | 0 | 376 | 420 | 355 | 399 | 3.19e-12 | 68.2 |
| MS.gene029041.t1 | AT2G33500 | 45.098 | 102 | 54 | 1 | 5 | 104 | 12 | 113 | 3.11e-23 | 101 |
| MS.gene029041.t1 | AT2G33500 | 71.111 | 45 | 13 | 0 | 376 | 420 | 354 | 398 | 3.24e-12 | 68.2 |
| MS.gene029041.t1 | AT1G28050 | 44.118 | 102 | 55 | 1 | 5 | 104 | 9 | 110 | 2.50e-22 | 99.0 |
| MS.gene029041.t1 | AT1G28050 | 68.750 | 48 | 15 | 0 | 376 | 423 | 383 | 430 | 3.40e-12 | 68.6 |
| MS.gene029041.t1 | AT2G47890 | 39.552 | 134 | 81 | 0 | 4 | 137 | 12 | 145 | 6.36e-21 | 91.7 |
| MS.gene029041.t1 | AT2G47890 | 39.552 | 134 | 81 | 0 | 4 | 137 | 12 | 145 | 1.21e-20 | 92.4 |
| MS.gene029041.t1 | AT2G47890 | 41.803 | 122 | 71 | 0 | 4 | 125 | 12 | 133 | 1.34e-20 | 92.8 |
| MS.gene029041.t1 | AT1G05290 | 27.529 | 425 | 221 | 16 | 22 | 432 | 10 | 361 | 5.05e-17 | 82.8 |
| MS.gene029041.t1 | AT5G24930 | 41.463 | 82 | 48 | 0 | 4 | 85 | 5 | 86 | 2.10e-13 | 71.6 |
| MS.gene029041.t1 | AT3G02380 | 29.048 | 210 | 119 | 7 | 210 | 419 | 140 | 319 | 3.11e-13 | 70.9 |
| MS.gene029041.t1 | AT2G24790 | 37.805 | 82 | 51 | 0 | 4 | 85 | 7 | 88 | 3.21e-11 | 64.3 |
| MS.gene029041.t1 | AT2G24790 | 37.805 | 82 | 51 | 0 | 4 | 85 | 7 | 88 | 5.73e-11 | 62.4 |
Find 87 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCTCTTGGTATCTCATTT+TGG | 0.141143 | 2.4:+12007952 | None:intergenic |
| TTTGAATTTGATGGAATAAT+AGG | 0.232482 | 2.4:+12009545 | None:intergenic |
| CTACACTGGTTGTCCCTCTT+TGG | 0.263095 | 2.4:-12009789 | MS.gene029041:CDS |
| ATCGCATTGGGAATCAAATT+TGG | 0.271470 | 2.4:-12008005 | MS.gene029041:CDS |
| CTCTCTGTCAAGTTTGTGAT+TGG | 0.298207 | 2.4:-12009862 | MS.gene029041:CDS |
| TGGCAGACTTATCTAAGATT+TGG | 0.313493 | 2.4:-12009769 | MS.gene029041:CDS |
| AAAGAATGGCTTCGTTGGTT+TGG | 0.319776 | 2.4:-12009630 | MS.gene029041:CDS |
| ATTCAATTACCTAACATAAA+TGG | 0.323167 | 2.4:-12008088 | MS.gene029041:CDS |
| CCTCAGAGTCAAACTCATTC+AGG | 0.325054 | 2.4:-12008118 | MS.gene029041:CDS |
| CTGCTTTCACCATTTATGTT+AGG | 0.331564 | 2.4:+12008079 | None:intergenic |
| ATCTAAGATTTGGCCACATT+TGG | 0.339459 | 2.4:-12009759 | MS.gene029041:CDS |
| AGGAATAGGATGTCTATTAA+TGG | 0.350736 | 2.4:-12008564 | MS.gene029041:CDS |
| TGTGTGCAGTTTGAATTTGA+TGG | 0.391221 | 2.4:+12009536 | None:intergenic |
| TCTTTAACTAATTAGCTTCA+AGG | 0.399809 | 2.4:-12008737 | MS.gene029041:intron |
| AAGCATAGACGAGCGGAATC+AGG | 0.420641 | 2.4:+12010004 | None:intergenic |
| TCAAGGATGCCATGATGTTA+AGG | 0.427984 | 2.4:-12008720 | MS.gene029041:CDS |
| AAATTCATCAAATGCTGCTT+GGG | 0.439410 | 2.4:-12009729 | MS.gene029041:CDS |
| CCCGAAAAGAATGGCTTCGT+TGG | 0.443487 | 2.4:-12009635 | MS.gene029041:CDS |
| TGACCGCCGCAATCAACATT+TGG | 0.447113 | 2.4:-12009666 | MS.gene029041:CDS |
| TCATCCTGGTGAATCGCATT+GGG | 0.451754 | 2.4:-12008017 | MS.gene029041:CDS |
| AACCACGGAGATGGAGGAAT+AGG | 0.460359 | 2.4:-12008578 | MS.gene029041:CDS |
| CGTCTATGCTTGCATTGTGA+TGG | 0.473106 | 2.4:-12009992 | MS.gene029041:CDS |
| CAAATTCATCAAATGCTGCT+TGG | 0.474377 | 2.4:-12009730 | MS.gene029041:CDS |
| TTAGGCAAAGCACTAGTACT+AGG | 0.478053 | 2.4:+12009701 | None:intergenic |
| AAAGGTAGATTTGTTAAAGC+AGG | 0.483112 | 2.4:-12007174 | MS.gene029041:CDS |
| GAGCAGAAACCCGAAAAGAA+TGG | 0.491985 | 2.4:-12009644 | MS.gene029041:CDS |
| TCACATTGAGACTGCGGTAG+AGG | 0.492122 | 2.4:-12008510 | MS.gene029041:intron |
| GTCTATGCTTGCATTGTGAT+GGG | 0.497052 | 2.4:-12009991 | MS.gene029041:CDS |
| TTTCCATCATCAGGGGCTGG+TGG | 0.497075 | 2.4:-12008229 | MS.gene029041:CDS |
| ACAAAATACAACCACGGAGA+TGG | 0.506317 | 2.4:-12008587 | MS.gene029041:CDS |
| TGGATCAACAAATTTGATGC+AGG | 0.507571 | 2.4:-12008209 | MS.gene029041:CDS |
| TTCATCCTGGTGAATCGCAT+TGG | 0.508930 | 2.4:-12008018 | MS.gene029041:CDS |
| TTATTAGATCCTTAACATCA+TGG | 0.516033 | 2.4:+12008711 | None:intergenic |
| TTGGCTTTATCCCTTGCTTG+AGG | 0.520712 | 2.4:+12007971 | None:intergenic |
| GATTCCCAATGCGATTCACC+AGG | 0.521167 | 2.4:+12008013 | None:intergenic |
| GCAACAGAAGCATGCCTCTA+GGG | 0.521759 | 2.4:-12008144 | MS.gene029041:CDS |
| TAACGCACAATCTAGAAGTT+CGG | 0.523526 | 2.4:+12008051 | None:intergenic |
| GATCCACCAGCCCCTGATGA+TGG | 0.526248 | 2.4:+12008226 | None:intergenic |
| GCAGTCAAATATTATTTCGT+CGG | 0.529373 | 2.4:+12008622 | None:intergenic |
| ACGAAATCAAAACCTTCGGT+TGG | 0.530911 | 2.4:+12009471 | None:intergenic |
| CTGCAAATTCTCTGTCTCGC+AGG | 0.534382 | 2.4:-12009958 | MS.gene029041:CDS |
| CTTAGATAAGTCTGCCAAAG+AGG | 0.535601 | 2.4:+12009775 | None:intergenic |
| CATGTGTCAAATATGAACCT+TGG | 0.539470 | 2.4:-12009580 | MS.gene029041:CDS |
| GCGAATGACAAGTTGGGCGA+AGG | 0.540796 | 2.4:-12009608 | MS.gene029041:CDS |
| TGGTTTGGCGAATGACAAGT+TGG | 0.547865 | 2.4:-12009615 | MS.gene029041:CDS |
| ATTAAAACCTTCACATAGAC+CGG | 0.552685 | 2.4:+12008676 | None:intergenic |
| CTAATAATTCATGAGGGGAC+CGG | 0.558681 | 2.4:-12008695 | MS.gene029041:CDS |
| CAAGGTTCATATTTGACACA+TGG | 0.558681 | 2.4:+12009581 | None:intergenic |
| GTTTAGTGGTCGCTCAAAAG+AGG | 0.560107 | 2.4:+12007132 | None:intergenic |
| GGTTTGGCGAATGACAAGTT+GGG | 0.560416 | 2.4:-12009614 | MS.gene029041:CDS |
| GCATTGGGAATCAAATTTGG+AGG | 0.563030 | 2.4:-12008002 | MS.gene029041:CDS |
| TGCAACAGAAGCATGCCTCT+AGG | 0.563513 | 2.4:-12008145 | MS.gene029041:CDS |
| TTACCTCCAGTGTTTCATCC+TGG | 0.565788 | 2.4:-12008031 | MS.gene029041:CDS |
| GATACAAGAAAACGCGTGAA+AGG | 0.568988 | 2.4:-12007192 | MS.gene029041:CDS |
| AGGGTGCTTGTCCTCAAGCA+AGG | 0.569387 | 2.4:-12007982 | MS.gene029041:CDS |
| CTTATCGCAGAGGAGCGAGC+GGG | 0.569512 | 2.4:+12009931 | None:intergenic |
| GATATGCGTCTCGCAAAGCA+AGG | 0.574066 | 2.4:-12007218 | MS.gene029041:CDS |
| CATTGGGAATCAAATTTGGA+GGG | 0.578438 | 2.4:-12008001 | MS.gene029041:CDS |
| GTGCTACTCACTTTCTACAC+TGG | 0.583152 | 2.4:-12009803 | MS.gene029041:CDS |
| TTAGATAAGTCTGCCAAAGA+GGG | 0.584761 | 2.4:+12009776 | None:intergenic |
| TCTGCTCCAAATGTTGATTG+CGG | 0.591802 | 2.4:+12009660 | None:intergenic |
| TTGTGGGGTTGCAAGAGCTG+TGG | 0.597112 | 2.4:-12010038 | MS.gene029041:CDS |
| GCTCCAAATGTTGATTGCGG+CGG | 0.597124 | 2.4:+12009663 | None:intergenic |
| GGCATGCTTCTGTTGCAACT+AGG | 0.602723 | 2.4:+12008151 | None:intergenic |
| GGATCAACAAATTTGATGCA+GGG | 0.606350 | 2.4:-12008208 | MS.gene029041:CDS |
| AAGGATCTAATAATTCATGA+GGG | 0.607523 | 2.4:-12008701 | MS.gene029041:CDS |
| TAAGGATCTAATAATTCATG+AGG | 0.609546 | 2.4:-12008702 | MS.gene029041:CDS |
| AAATACAACCACGGAGATGG+AGG | 0.615014 | 2.4:-12008584 | MS.gene029041:CDS |
| TCAAGACTCAAACCAACCGA+AGG | 0.626760 | 2.4:-12009483 | MS.gene029041:intron |
| GGGTGCTTGTCCTCAAGCAA+GGG | 0.627728 | 2.4:-12007981 | MS.gene029041:CDS |
| CCTGAATGAGTTTGACTCTG+AGG | 0.628593 | 2.4:+12008118 | None:intergenic |
| GAGGGGACCGGTCTATGTGA+AGG | 0.628639 | 2.4:-12008683 | MS.gene029041:CDS |
| TTGATGCAGGGCATCAACAA+TGG | 0.635140 | 2.4:-12008196 | MS.gene029041:CDS |
| TTATCGCAGAGGAGCGAGCG+GGG | 0.642930 | 2.4:+12009932 | None:intergenic |
| GAATTTGCATCAACCAAATG+TGG | 0.648426 | 2.4:+12009746 | None:intergenic |
| CGAAATTACACTTATCGCAG+AGG | 0.654750 | 2.4:+12009921 | None:intergenic |
| ATATGCGTCTCGCAAAGCAA+GGG | 0.656822 | 2.4:-12007217 | MS.gene029041:CDS |
| ACTTATCGCAGAGGAGCGAG+CGG | 0.664690 | 2.4:+12009930 | None:intergenic |
| ATCCTATTCCTCCATCTCCG+TGG | 0.665747 | 2.4:+12008576 | None:intergenic |
| AGGATCTAATAATTCATGAG+GGG | 0.684334 | 2.4:-12008700 | MS.gene029041:CDS |
| TAGCAGTCACATTGAGACTG+CGG | 0.699859 | 2.4:-12008516 | MS.gene029041:CDS |
| GATTCACCAGGATGAAACAC+TGG | 0.703479 | 2.4:+12008025 | None:intergenic |
| TGACTCTGAGGAAACCCTAG+AGG | 0.704907 | 2.4:+12008130 | None:intergenic |
| TCACCAGGATGAAACACTGG+AGG | 0.717611 | 2.4:+12008028 | None:intergenic |
| ACAATGCAAGCATAGACGAG+CGG | 0.721639 | 2.4:+12009997 | None:intergenic |
| ACTGCCACAAAATACAACCA+CGG | 0.722467 | 2.4:-12008593 | MS.gene029041:CDS |
| GAGACAGAGAATTTGCAGAG+TGG | 0.767566 | 2.4:+12009963 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TACTTTTTTAAGTTTTTTTT+AGG | - | chr2.4:12007781-12007800 | MS.gene029041:intron | 10.0% |
| !!! | TCTTTTTTTTTATCATTATT+AGG | - | chr2.4:12008908-12008927 | MS.gene029041:intron | 10.0% |
| !! | AACACAATTTAAATGATTAA+TGG | + | chr2.4:12009522-12009541 | None:intergenic | 15.0% |
| !! | AGTTAAAGAAGAAAAATATT+TGG | + | chr2.4:12008444-12008463 | None:intergenic | 15.0% |
| !!! | AAAATATTTGGTGTTAATTT+TGG | + | chr2.4:12008432-12008451 | None:intergenic | 15.0% |
| !!! | CTAAAAAAATGTTTTATAAC+CGG | + | chr2.4:12008711-12008730 | None:intergenic | 15.0% |
| !!! | CTAATCTTTTTTATTTTAGT+TGG | - | chr2.4:12007745-12007764 | MS.gene029041:intron | 15.0% |
| !!! | CTTAAATTTAAAACTTATGT+GGG | + | chr2.4:12007942-12007961 | None:intergenic | 15.0% |
| !!! | TCTTAAATTTAAAACTTATG+TGG | + | chr2.4:12007943-12007962 | None:intergenic | 15.0% |
| !!! | TGATATATATTTTGAAATGA+AGG | + | chr2.4:12008009-12008028 | None:intergenic | 15.0% |
| !!! | TGATATTTTGATACAAAATT+TGG | - | chr2.4:12009311-12009330 | MS.gene029041:intron | 15.0% |
| !! | AAAAAAAAAGATTTAGAGAG+AGG | + | chr2.4:12008899-12008918 | None:intergenic | 20.0% |
| !! | AACTCTATACATATATACTA+TGG | - | chr2.4:12009583-12009602 | MS.gene029041:CDS | 20.0% |
| !! | ACATATATACTATGGTAAAA+TGG | - | chr2.4:12009591-12009610 | MS.gene029041:CDS | 20.0% |
| !! | ATTCAATTACCTAACATAAA+TGG | - | chr2.4:12009104-12009123 | MS.gene029041:intron | 20.0% |
| !! | TATTAATTATGTTCAGTGTA+TGG | - | chr2.4:12009382-12009401 | MS.gene029041:intron | 20.0% |
| !! | TTTGAATTTGATGGAATAAT+AGG | + | chr2.4:12007650-12007669 | None:intergenic | 20.0% |
| !!! | CGGTTATAAAACATTTTTTT+AGG | - | chr2.4:12008709-12008728 | MS.gene029041:CDS | 20.0% |
| !!! | CTTAAATTTATAAGTTGACT+TGG | - | chr2.4:12009921-12009940 | MS.gene029041:CDS | 20.0% |
| !!! | TGATTAGTTTAGTAGTAATA+TGG | - | chr2.4:12008390-12008409 | MS.gene029041:intron | 20.0% |
| ! | AACAAATTTCGACAACAATT+TGG | - | chr2.4:12009335-12009354 | MS.gene029041:intron | 25.0% |
| ! | AAGGATCTAATAATTCATGA+GGG | - | chr2.4:12008491-12008510 | MS.gene029041:intron | 25.0% |
| ! | ACTAATTATATGCCAATCAT+TGG | + | chr2.4:12007973-12007992 | None:intergenic | 25.0% |
| ! | TAAGGATCTAATAATTCATG+AGG | - | chr2.4:12008490-12008509 | MS.gene029041:intron | 25.0% |
| ! | TACACAGTTATATATAATGC+AGG | + | chr2.4:12009762-12009781 | None:intergenic | 25.0% |
| ! | TATACTATGGTAAAATGGAA+CGG | - | chr2.4:12009596-12009615 | MS.gene029041:CDS | 25.0% |
| ! | TGAAAATCTGAAAATCATCA+TGG | + | chr2.4:12009485-12009504 | None:intergenic | 25.0% |
| ! | TTATTAGATCCTTAACATCA+TGG | + | chr2.4:12008484-12008503 | None:intergenic | 25.0% |
| !! | ACAAATGACTGTTTTGTATT+GGG | - | chr2.4:12007356-12007375 | MS.gene029041:intron | 25.0% |
| !! | TACAAATGACTGTTTTGTAT+TGG | - | chr2.4:12007355-12007374 | MS.gene029041:intron | 25.0% |
| !! | TCTTTAACTAATTAGCTTCA+AGG | - | chr2.4:12008455-12008474 | MS.gene029041:intron | 25.0% |
| AATTTCGACAACAATTTGGA+TGG | - | chr2.4:12009339-12009358 | MS.gene029041:intron | 30.0% | |
| AGGAATAGGATGTCTATTAA+TGG | - | chr2.4:12008628-12008647 | MS.gene029041:CDS | 30.0% | |
| AGGATCTAATAATTCATGAG+GGG | - | chr2.4:12008492-12008511 | MS.gene029041:intron | 30.0% | |
| ATTAAAACCTTCACATAGAC+CGG | + | chr2.4:12008519-12008538 | None:intergenic | 30.0% | |
| CGAATTGGAGATCAATTAAA+GGG | + | chr2.4:12008202-12008221 | None:intergenic | 30.0% | |
| GAATTGGAGATCAATTAAAG+GGG | + | chr2.4:12008201-12008220 | None:intergenic | 30.0% | |
| GCAGTCAAATATTATTTCGT+CGG | + | chr2.4:12008573-12008592 | None:intergenic | 30.0% | |
| GGCTAATTATGTTTAGTAGA+TGG | + | chr2.4:12009442-12009461 | None:intergenic | 30.0% | |
| TAGAACGAAATCAAAACCTT+CGG | + | chr2.4:12007728-12007747 | None:intergenic | 30.0% | |
| TAGAGACTAATTCTTCGAAT+TGG | + | chr2.4:12008217-12008236 | None:intergenic | 30.0% | |
| TCGAATTGGAGATCAATTAA+AGG | + | chr2.4:12008203-12008222 | None:intergenic | 30.0% | |
| TGAATATGTTTGCAAGTACA+TGG | + | chr2.4:12008034-12008053 | None:intergenic | 30.0% | |
| ! | AAATTCATCAAATGCTGCTT+GGG | - | chr2.4:12007463-12007482 | MS.gene029041:intron | 30.0% |
| ! | ATAGGAGAATTTTCAATCCA+AGG | + | chr2.4:12007632-12007651 | None:intergenic | 30.0% |
| ! | GTATGATTTTTCCATCATCA+GGG | - | chr2.4:12008955-12008974 | MS.gene029041:intron | 30.0% |
| ! | TATGATTTTTCCATCATCAG+GGG | - | chr2.4:12008956-12008975 | MS.gene029041:intron | 30.0% |
| ! | TGTATGATTTTTCCATCATC+AGG | - | chr2.4:12008954-12008973 | MS.gene029041:intron | 30.0% |
| ! | TTAGAGTGCTAACACTTATT+TGG | - | chr2.4:12009834-12009853 | MS.gene029041:CDS | 30.0% |
| ! | TTTCTCTTGGTATCTCATTT+TGG | + | chr2.4:12009243-12009262 | None:intergenic | 30.0% |
| !! | AAAGGTAGATTTGTTAAAGC+AGG | - | chr2.4:12010018-12010037 | MS.gene029041:CDS | 30.0% |
| !! | TCTATGTGAAGGTTTTAATG+TGG | - | chr2.4:12008520-12008539 | MS.gene029041:CDS | 30.0% |
| !! | TTCGAGTTTTCTTTTTCTCT+TGG | + | chr2.4:12009256-12009275 | None:intergenic | 30.0% |
| ATCGCATTGGGAATCAAATT+TGG | - | chr2.4:12009187-12009206 | MS.gene029041:intron | 35.0% | |
| CAAATTCATCAAATGCTGCT+TGG | - | chr2.4:12007462-12007481 | MS.gene029041:intron | 35.0% | |
| CAAGGTTCATATTTGACACA+TGG | + | chr2.4:12007614-12007633 | None:intergenic | 35.0% | |
| CATGTGTCAAATATGAACCT+TGG | - | chr2.4:12007612-12007631 | MS.gene029041:intron | 35.0% | |
| CATTGGGAATCAAATTTGGA+GGG | - | chr2.4:12009191-12009210 | MS.gene029041:intron | 35.0% | |
| CTCTCACTCATTTACCAATA+TGG | - | chr2.4:12008076-12008095 | MS.gene029041:CDS | 35.0% | |
| CTGCTTTCACCATTTATGTT+AGG | + | chr2.4:12009116-12009135 | None:intergenic | 35.0% | |
| GAATTTGCATCAACCAAATG+TGG | + | chr2.4:12007449-12007468 | None:intergenic | 35.0% | |
| GGATCAACAAATTTGATGCA+GGG | - | chr2.4:12008984-12009003 | MS.gene029041:intron | 35.0% | |
| GTCTTGTGAATGGAAAACAT+AGG | + | chr2.4:12007872-12007891 | None:intergenic | 35.0% | |
| GTTAATGACGTTCAAAGTTG+TGG | + | chr2.4:12009463-12009482 | None:intergenic | 35.0% | |
| TAACGCACAATCTAGAAGTT+CGG | + | chr2.4:12009144-12009163 | None:intergenic | 35.0% | |
| TAAGATAGCACACCAATGAT+TGG | - | chr2.4:12007958-12007977 | MS.gene029041:CDS | 35.0% | |
| TGGATCAACAAATTTGATGC+AGG | - | chr2.4:12008983-12009002 | MS.gene029041:intron | 35.0% | |
| TGTGTGCAGTTTGAATTTGA+TGG | + | chr2.4:12007659-12007678 | None:intergenic | 35.0% | |
| TTAGATAAGTCTGCCAAAGA+GGG | + | chr2.4:12007419-12007438 | None:intergenic | 35.0% | |
| TTGGTACAACAAATCAGGTT+TGG | - | chr2.4:12009940-12009959 | MS.gene029041:CDS | 35.0% | |
| ! | ATCTAAGATTTGGCCACATT+TGG | - | chr2.4:12007433-12007452 | MS.gene029041:intron | 35.0% |
| ! | TCTAAAGTCACGCATATGAT+TGG | + | chr2.4:12008791-12008810 | None:intergenic | 35.0% |
| ! | TGGCAGACTTATCTAAGATT+TGG | - | chr2.4:12007423-12007442 | MS.gene029041:intron | 35.0% |
| !! | AAGCTCTATGTGAGTTTTGT+GGG | - | chr2.4:12007138-12007157 | MS.gene029041:CDS | 35.0% |
| !! | AATGAGTGAGAGTATTAGTG+TGG | + | chr2.4:12008068-12008087 | None:intergenic | 35.0% |
| !! | TTGACTTGGTACAACAAATC+AGG | - | chr2.4:12009935-12009954 | MS.gene029041:CDS | 35.0% |
| AAAACTTATGTGGGTCGAAG+AGG | + | chr2.4:12007933-12007952 | None:intergenic | 40.0% | |
| AACTGAGTTCCTTAAGCATG+CGG | - | chr2.4:12008118-12008137 | MS.gene029041:CDS | 40.0% | |
| AATGGAAAACATAGGCACAC+TGG | + | chr2.4:12007864-12007883 | None:intergenic | 40.0% | |
| AATTCATGACCGCATGCTTA+AGG | + | chr2.4:12008130-12008149 | None:intergenic | 40.0% | |
| ACAAAATACAACCACGGAGA+TGG | - | chr2.4:12008605-12008624 | MS.gene029041:CDS | 40.0% | |
| ACGAAATCAAAACCTTCGGT+TGG | + | chr2.4:12007724-12007743 | None:intergenic | 40.0% | |
| ACTGCCACAAAATACAACCA+CGG | - | chr2.4:12008599-12008618 | MS.gene029041:CDS | 40.0% | |
| CCAACTTTGTCACACCATAT+TGG | + | chr2.4:12008093-12008112 | None:intergenic | 40.0% | |
| CCAATATGGTGTGACAAAGT+TGG | - | chr2.4:12008090-12008109 | MS.gene029041:CDS | 40.0% | |
| CCTGTTTAAGTCGACATTCA+TGG | - | chr2.4:12009666-12009685 | MS.gene029041:CDS | 40.0% | |
| CGAAATTACACTTATCGCAG+AGG | + | chr2.4:12007274-12007293 | None:intergenic | 40.0% | |
| CTAATAATTCATGAGGGGAC+CGG | - | chr2.4:12008497-12008516 | MS.gene029041:intron | 40.0% | |
| CTCTCTGTCAAGTTTGTGAT+TGG | - | chr2.4:12007330-12007349 | MS.gene029041:intron | 40.0% | |
| CTTAGATAAGTCTGCCAAAG+AGG | + | chr2.4:12007420-12007439 | None:intergenic | 40.0% | |
| GATACAAGAAAACGCGTGAA+AGG | - | chr2.4:12010000-12010019 | MS.gene029041:CDS | 40.0% | |
| GCATTGGGAATCAAATTTGG+AGG | - | chr2.4:12009190-12009209 | MS.gene029041:intron | 40.0% | |
| GTCTATGCTTGCATTGTGAT+GGG | - | chr2.4:12007201-12007220 | MS.gene029041:CDS | 40.0% | |
| TCAAGGATGCCATGATGTTA+AGG | - | chr2.4:12008472-12008491 | MS.gene029041:intron | 40.0% | |
| ! | AAAGAATGGCTTCGTTGGTT+TGG | - | chr2.4:12007562-12007581 | MS.gene029041:intron | 40.0% |
| ! | ACCAACGAAGCCATTCTTTT+CGG | + | chr2.4:12007561-12007580 | None:intergenic | 40.0% |
| ! | ATCTCCGTGGTTGTATTTTG+TGG | + | chr2.4:12008606-12008625 | None:intergenic | 40.0% |
| ! | GAAGCTCTATGTGAGTTTTG+TGG | - | chr2.4:12007137-12007156 | MS.gene029041:CDS | 40.0% |
| ! | TCATGTTCGAGTCTTGTGAA+TGG | + | chr2.4:12007882-12007901 | None:intergenic | 40.0% |
| ! | TCTGCTCCAAATGTTGATTG+CGG | + | chr2.4:12007535-12007554 | None:intergenic | 40.0% |
| ! | TGACTGCTACATTTTGTGAC+TGG | + | chr2.4:12008665-12008684 | None:intergenic | 40.0% |
| ! | TTAGGCAAAGCACTAGTACT+AGG | + | chr2.4:12007494-12007513 | None:intergenic | 40.0% |
| !! | AGCTCTATGTGAGTTTTGTG+GGG | - | chr2.4:12007139-12007158 | MS.gene029041:CDS | 40.0% |
| !! | CCATGAATGTCGACTTAAAC+AGG | + | chr2.4:12009669-12009688 | None:intergenic | 40.0% |
| !!! | CGGTCACTGATTTCAGTTTT+AGG | + | chr2.4:12007512-12007531 | None:intergenic | 40.0% |
| AAATACAACCACGGAGATGG+AGG | - | chr2.4:12008608-12008627 | MS.gene029041:CDS | 45.0% | |
| ACAATGCAAGCATAGACGAG+CGG | + | chr2.4:12007198-12007217 | None:intergenic | 45.0% | |
| AGGTGCTCTTCCATACACAT+CGG | + | chr2.4:12008163-12008182 | None:intergenic | 45.0% | |
| ATATGCGTCTCGCAAAGCAA+GGG | - | chr2.4:12009975-12009994 | MS.gene029041:CDS | 45.0% | |
| CCTCAGAGTCAAACTCATTC+AGG | - | chr2.4:12009074-12009093 | MS.gene029041:intron | 45.0% | |
| CCTGAATGAGTTTGACTCTG+AGG | + | chr2.4:12009077-12009096 | None:intergenic | 45.0% | |
| CGACATTCATGGACAATCAC+AGG | - | chr2.4:12009677-12009696 | MS.gene029041:CDS | 45.0% | |
| CGTCTATGCTTGCATTGTGA+TGG | - | chr2.4:12007200-12007219 | MS.gene029041:CDS | 45.0% | |
| GAGACAGAGAATTTGCAGAG+TGG | + | chr2.4:12007232-12007251 | None:intergenic | 45.0% | |
| GAGCAGAAACCCGAAAAGAA+TGG | - | chr2.4:12007548-12007567 | MS.gene029041:intron | 45.0% | |
| GATTCACCAGGATGAAACAC+TGG | + | chr2.4:12009170-12009189 | None:intergenic | 45.0% | |
| GGTTTGGCGAATGACAAGTT+GGG | - | chr2.4:12007578-12007597 | MS.gene029041:intron | 45.0% | |
| TAGCAGTCACATTGAGACTG+CGG | - | chr2.4:12008676-12008695 | MS.gene029041:CDS | 45.0% | |
| TCAAGACTCAAACCAACCGA+AGG | - | chr2.4:12007709-12007728 | MS.gene029041:intron | 45.0% | |
| TCATCCTGGTGAATCGCATT+GGG | - | chr2.4:12009175-12009194 | MS.gene029041:intron | 45.0% | |
| TTACCTCCAGTGTTTCATCC+TGG | - | chr2.4:12009161-12009180 | MS.gene029041:intron | 45.0% | |
| TTCATCCTGGTGAATCGCAT+TGG | - | chr2.4:12009174-12009193 | MS.gene029041:intron | 45.0% | |
| ! | ATTTTTCCATCATCAGGGGC+TGG | - | chr2.4:12008960-12008979 | MS.gene029041:intron | 45.0% |
| ! | CCAACGAAGCCATTCTTTTC+GGG | + | chr2.4:12007560-12007579 | None:intergenic | 45.0% |
| ! | GTGCTACTCACTTTCTACAC+TGG | - | chr2.4:12007389-12007408 | MS.gene029041:intron | 45.0% |
| ! | TGGTTTGGCGAATGACAAGT+TGG | - | chr2.4:12007577-12007596 | MS.gene029041:intron | 45.0% |
| ! | TTGATGCAGGGCATCAACAA+TGG | - | chr2.4:12008996-12009015 | MS.gene029041:intron | 45.0% |
| !! | TTGGCTTTATCCCTTGCTTG+AGG | + | chr2.4:12009224-12009243 | None:intergenic | 45.0% |
| AACCACGGAGATGGAGGAAT+AGG | - | chr2.4:12008614-12008633 | MS.gene029041:CDS | 50.0% | |
| AAGCATAGACGAGCGGAATC+AGG | + | chr2.4:12007191-12007210 | None:intergenic | 50.0% | |
| ATCCTATTCCTCCATCTCCG+TGG | + | chr2.4:12008619-12008638 | None:intergenic | 50.0% | |
| CCCGAAAAGAATGGCTTCGT+TGG | - | chr2.4:12007557-12007576 | MS.gene029041:intron | 50.0% | |
| CGATTCCTGACCGATGTGTA+TGG | - | chr2.4:12008150-12008169 | MS.gene029041:CDS | 50.0% | |
| CTCTTCCATACACATCGGTC+AGG | + | chr2.4:12008158-12008177 | None:intergenic | 50.0% | |
| CTGCAAATTCTCTGTCTCGC+AGG | - | chr2.4:12007234-12007253 | MS.gene029041:CDS | 50.0% | |
| GATATGCGTCTCGCAAAGCA+AGG | - | chr2.4:12009974-12009993 | MS.gene029041:CDS | 50.0% | |
| GATTCCCAATGCGATTCACC+AGG | + | chr2.4:12009182-12009201 | None:intergenic | 50.0% | |
| GGCATGCTTCTGTTGCAACT+AGG | + | chr2.4:12009044-12009063 | None:intergenic | 50.0% | |
| TCACATTGAGACTGCGGTAG+AGG | - | chr2.4:12008682-12008701 | MS.gene029041:CDS | 50.0% | |
| TCACCAGGATGAAACACTGG+AGG | + | chr2.4:12009167-12009186 | None:intergenic | 50.0% | |
| TGACCGCCGCAATCAACATT+TGG | - | chr2.4:12007526-12007545 | MS.gene029041:intron | 50.0% | |
| ! | CTACACTGGTTGTCCCTCTT+TGG | - | chr2.4:12007403-12007422 | MS.gene029041:intron | 50.0% |
| ! | GCAACAGAAGCATGCCTCTA+GGG | - | chr2.4:12009048-12009067 | MS.gene029041:intron | 50.0% |
| ! | GCTCCAAATGTTGATTGCGG+CGG | + | chr2.4:12007532-12007551 | None:intergenic | 50.0% |
| ! | TGACTCTGAGGAAACCCTAG+AGG | + | chr2.4:12009065-12009084 | None:intergenic | 50.0% |
| ! | TGCAACAGAAGCATGCCTCT+AGG | - | chr2.4:12009047-12009066 | MS.gene029041:intron | 50.0% |
| ACCCAGCTCGGATAGTAACG+AGG | + | chr2.4:12007814-12007833 | None:intergenic | 55.0% | |
| ACCCTCGTTACTATCCGAGC+TGG | - | chr2.4:12007809-12007828 | MS.gene029041:intron | 55.0% | |
| ACTTATCGCAGAGGAGCGAG+CGG | + | chr2.4:12007265-12007284 | None:intergenic | 55.0% | |
| CCCAGCTCGGATAGTAACGA+GGG | + | chr2.4:12007813-12007832 | None:intergenic | 55.0% | |
| CCCTCGTTACTATCCGAGCT+GGG | - | chr2.4:12007810-12007829 | MS.gene029041:intron | 55.0% | |
| GAGACTGCGGTAGAGGTTAC+CGG | - | chr2.4:12008689-12008708 | MS.gene029041:CDS | 55.0% | |
| GGGTGCTTGTCCTCAAGCAA+GGG | - | chr2.4:12009211-12009230 | MS.gene029041:intron | 55.0% | |
| GGTCGAAGAGGCAATGAGCA+TGG | + | chr2.4:12007921-12007940 | None:intergenic | 55.0% | |
| TCGTTACTATCCGAGCTGGG+TGG | - | chr2.4:12007813-12007832 | MS.gene029041:intron | 55.0% | |
| TTATGTGCGTCCACCCAGCT+CGG | + | chr2.4:12007826-12007845 | None:intergenic | 55.0% | |
| TTGTGGGGTTGCAAGAGCTG+TGG | - | chr2.4:12007154-12007173 | MS.gene029041:CDS | 55.0% | |
| TTTCCATCATCAGGGGCTGG+TGG | - | chr2.4:12008963-12008982 | MS.gene029041:intron | 55.0% | |
| ! | AGGGTGCTTGTCCTCAAGCA+AGG | - | chr2.4:12009210-12009229 | MS.gene029041:intron | 55.0% |
| ! | GCGAATGACAAGTTGGGCGA+AGG | - | chr2.4:12007584-12007603 | MS.gene029041:intron | 55.0% |
| !! | GGAAGAGCACCTGTTGTGAG+AGG | - | chr2.4:12008171-12008190 | MS.gene029041:CDS | 55.0% |
| AGGGGCTGACCTCTCACAAC+AGG | + | chr2.4:12008183-12008202 | None:intergenic | 60.0% | |
| CTGGGTGGACGCACATAAGG+CGG | - | chr2.4:12007828-12007847 | MS.gene029041:intron | 60.0% | |
| CTTATCGCAGAGGAGCGAGC+GGG | + | chr2.4:12007264-12007283 | None:intergenic | 60.0% | |
| GAGCTGGGTGGACGCACATA+AGG | - | chr2.4:12007825-12007844 | MS.gene029041:intron | 60.0% | |
| GAGGGGACCGGTCTATGTGA+AGG | - | chr2.4:12008509-12008528 | MS.gene029041:intron | 60.0% | |
| GATCCACCAGCCCCTGATGA+TGG | + | chr2.4:12008969-12008988 | None:intergenic | 60.0% | |
| TTATCGCAGAGGAGCGAGCG+GGG | + | chr2.4:12007263-12007282 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 12007134 | 12010080 | 12007134 | ID=MS.gene029041 |
| chr2.4 | mRNA | 12007134 | 12010080 | 12007134 | ID=MS.gene029041.t1;Parent=MS.gene029041 |
| chr2.4 | exon | 12009484 | 12010080 | 12009484 | ID=MS.gene029041.t1.exon1;Parent=MS.gene029041.t1 |
| chr2.4 | CDS | 12009484 | 12010080 | 12009484 | ID=cds.MS.gene029041.t1;Parent=MS.gene029041.t1 |
| chr2.4 | exon | 12008511 | 12008744 | 12008511 | ID=MS.gene029041.t1.exon2;Parent=MS.gene029041.t1 |
| chr2.4 | CDS | 12008511 | 12008744 | 12008511 | ID=cds.MS.gene029041.t1;Parent=MS.gene029041.t1 |
| chr2.4 | exon | 12007938 | 12008284 | 12007938 | ID=MS.gene029041.t1.exon3;Parent=MS.gene029041.t1 |
| chr2.4 | CDS | 12007938 | 12008284 | 12007938 | ID=cds.MS.gene029041.t1;Parent=MS.gene029041.t1 |
| chr2.4 | exon | 12007134 | 12007257 | 12007134 | ID=MS.gene029041.t1.exon4;Parent=MS.gene029041.t1 |
| chr2.4 | CDS | 12007134 | 12007257 | 12007134 | ID=cds.MS.gene029041.t1;Parent=MS.gene029041.t1 |
| Gene Sequence |
| Protein sequence |
