Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029045.t1 | XP_003597027.2 | 96 | 425 | 17 | 0 | 1 | 425 | 28 | 452 | 1.10E-241 | 845.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029045.t1 | Q5PP37 | 62.1 | 425 | 145 | 2 | 1 | 425 | 27 | 435 | 6.3e-150 | 531.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029045.t1 | G7IKK8 | 96.0 | 425 | 17 | 0 | 1 | 425 | 28 | 452 | 7.7e-242 | 845.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene029045.t1 | TR | SET |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029045.t1 | MTR_2g088820 | 96.000 | 425 | 17 | 0 | 1 | 425 | 28 | 452 | 0.0 | 848 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029045.t1 | AT3G21820 | 64.471 | 425 | 135 | 5 | 1 | 425 | 27 | 435 | 0.0 | 552 |
Find 89 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTATTCTCCCTTGAAATTTA+TGG | 0.067754 | 2.4:+12039964 | MS.gene029045:intron |
| TAGCATGTTTCACGAATTTA+AGG | 0.173479 | 2.4:-12038544 | None:intergenic |
| AACAAAATTCTAACCTTATC+TGG | 0.186766 | 2.4:-12040271 | None:intergenic |
| CCTACCAATTTGAATTTCTA+TGG | 0.203278 | 2.4:-12037462 | None:intergenic |
| GGCTTTACTTGGAAGAATTA+AGG | 0.220553 | 2.4:+12037486 | MS.gene029045:CDS |
| TAACTTGTGGTACCTTAATA+TGG | 0.256381 | 2.4:-12039305 | None:intergenic |
| TCATTTCTTCTACCATATTA+AGG | 0.274998 | 2.4:+12039293 | MS.gene029045:CDS |
| CTATAATATATCTCTTCTTT+TGG | 0.279823 | 2.4:+12039384 | MS.gene029045:CDS |
| CTTCCGATGACGCGTCATTC+AGG | 0.330835 | 2.4:+12039694 | MS.gene029045:CDS |
| GAAATTTATGGACATATCAT+TGG | 0.368581 | 2.4:+12039976 | MS.gene029045:CDS |
| GGGTAGAGGAACTTTAGTTT+TGG | 0.369192 | 2.4:-12037624 | None:intergenic |
| GGTTCCATAGAAATTCAAAT+TGG | 0.384219 | 2.4:+12037458 | MS.gene029045:CDS |
| AGTACTTGGCAATGTAGTTC+TGG | 0.386553 | 2.4:+12037596 | MS.gene029045:CDS |
| TCACCTAGAGCATCTAGAAT+TGG | 0.391161 | 2.4:-12040384 | None:intergenic |
| GCTTTACTTGGAAGAATTAA+GGG | 0.393075 | 2.4:+12037487 | MS.gene029045:CDS |
| TCCCATTCTTTACTCTGTAC+TGG | 0.399911 | 2.4:+12038488 | MS.gene029045:CDS |
| CAGAGTAAGGCAATCTGAAT+TGG | 0.403334 | 2.4:-12037676 | None:intergenic |
| CTCAAGGACCAAATGCTTGT+TGG | 0.404124 | 2.4:+12037303 | MS.gene029045:CDS |
| AATTGGTAGGAGGCTTTACT+TGG | 0.404200 | 2.4:+12037475 | MS.gene029045:CDS |
| GTTGATTCCCAACAAGCATT+TGG | 0.405040 | 2.4:-12037311 | None:intergenic |
| CAACGATTCCACAACACCTT+CGG | 0.414366 | 2.4:-12037645 | None:intergenic |
| TCAAGGACCAAATGCTTGTT+GGG | 0.415492 | 2.4:+12037304 | MS.gene029045:CDS |
| ATTATAGTGGTCTGAAACAC+AGG | 0.419773 | 2.4:-12039368 | None:intergenic |
| TCATATTTCTCTTTCTCTGC+AGG | 0.424740 | 2.4:-12039340 | None:intergenic |
| AATTAAAGAGTTGGCATTTG+AGG | 0.440320 | 2.4:+12039722 | MS.gene029045:CDS |
| TTTAGGTGTGTATGCTGTAA+AGG | 0.445469 | 2.4:+12037257 | MS.gene029045:intron |
| TGTCATGTGCAGAGGCTGAT+TGG | 0.451283 | 2.4:+12038459 | MS.gene029045:CDS |
| GTCATGTGCAGAGGCTGATT+GGG | 0.454884 | 2.4:+12038460 | MS.gene029045:CDS |
| CTGATGAAGAGGAGAGTACT+TGG | 0.457495 | 2.4:+12037582 | MS.gene029045:CDS |
| ATATTGCTGTCTTAAGAAGT+TGG | 0.461995 | 2.4:-12039825 | None:intergenic |
| AAAGAGAACTTCTCAGAGTA+AGG | 0.467617 | 2.4:-12037689 | None:intergenic |
| AACGATTCCACAACACCTTC+GGG | 0.468148 | 2.4:-12037644 | None:intergenic |
| CAGGATGCAAATTAAAGAGT+TGG | 0.472781 | 2.4:+12039713 | MS.gene029045:CDS |
| TAGCATTAGGACAACATGAA+TGG | 0.475883 | 2.4:-12043777 | None:intergenic |
| AAATTCGTGAAACATGCTAA+TGG | 0.479165 | 2.4:+12038548 | MS.gene029045:CDS |
| AACCTCTTCTCCTTTACTGA+TGG | 0.484340 | 2.4:-12044146 | None:intergenic |
| AGGAGTGCCTCCCTACGTCT+TGG | 0.485168 | 2.4:-12038524 | None:intergenic |
| TGATATGTCCATAAATTTCA+AGG | 0.485450 | 2.4:-12039972 | None:intergenic |
| CATGATGACCAACTTGGAAA+AGG | 0.493356 | 2.4:+12037070 | MS.gene029045:CDS |
| GTCAAACATGATGACCAACT+TGG | 0.495473 | 2.4:+12037064 | MS.gene029045:CDS |
| ATCACAATCATGACTCTCAT+TGG | 0.496347 | 2.4:-12037510 | None:intergenic |
| CATCCTGAATGACGCGTCAT+CGG | 0.499769 | 2.4:-12039697 | None:intergenic |
| AGCTTGGAGACCTATATCAA+TGG | 0.502175 | 2.4:+12039408 | MS.gene029045:CDS |
| GCTTGGAGACCTATATCAAT+GGG | 0.505745 | 2.4:+12039409 | MS.gene029045:CDS |
| TCGGAAGAATCAATATCATC+TGG | 0.512871 | 2.4:-12039678 | None:intergenic |
| GAGAGTCATGATTGTGATGT+AGG | 0.518145 | 2.4:+12037515 | MS.gene029045:CDS |
| ACCAGTACAGAGTAAAGAAT+GGG | 0.520722 | 2.4:-12038489 | None:intergenic |
| GTTCCATGCCATGGTGGATG+TGG | 0.522113 | 2.4:+12037722 | MS.gene029045:CDS |
| CACCAGTACAGAGTAAAGAA+TGG | 0.523065 | 2.4:-12038490 | None:intergenic |
| TCCTCTACCCGAAGGTGTTG+TGG | 0.524481 | 2.4:+12037637 | MS.gene029045:CDS |
| GGTTGTTGCTTCTCCTGTGG+AGG | 0.529227 | 2.4:+12040216 | MS.gene029045:CDS |
| TAGAAATTCAAATTGGTAGG+AGG | 0.529619 | 2.4:+12037465 | MS.gene029045:CDS |
| TCCACAACACCTTCGGGTAG+AGG | 0.530636 | 2.4:-12037638 | None:intergenic |
| GCAGTGCAATAATTATTGCT+TGG | 0.533837 | 2.4:-12044120 | None:intergenic |
| CCTCAAGCTGTTCCATGCCA+TGG | 0.534187 | 2.4:+12037713 | MS.gene029045:CDS |
| TTTGGTTGTTGCTTCTCCTG+TGG | 0.539607 | 2.4:+12040213 | MS.gene029045:CDS |
| CAACCAATTCTAGATGCTCT+AGG | 0.542256 | 2.4:+12040381 | MS.gene029045:CDS |
| CCATGGCATGGAACAGCTTG+AGG | 0.556615 | 2.4:-12037713 | None:intergenic |
| GACTATTCTACTTGTTGCGA+AGG | 0.556978 | 2.4:+12040408 | MS.gene029045:CDS |
| AGAGGATCAACTTGTTCTCA+AGG | 0.562698 | 2.4:+12037287 | MS.gene029045:CDS |
| GTGGAGAAGCTTACTACTGC+AGG | 0.567807 | 2.4:+12037741 | MS.gene029045:CDS |
| AAAGAAGAGATATATTATAG+TGG | 0.568749 | 2.4:-12039381 | None:intergenic |
| TGATATGTCGAATCCAGATA+AGG | 0.572546 | 2.4:+12040258 | MS.gene029045:CDS |
| TATATTCCTCCTTGCTGCAA+AGG | 0.573504 | 2.4:+12038689 | MS.gene029045:CDS |
| GAAACTTTACCTTTGCAGCA+AGG | 0.578100 | 2.4:-12038698 | None:intergenic |
| AATGGATTCATCTGATGAAG+AGG | 0.579769 | 2.4:+12037571 | MS.gene029045:CDS |
| CCATAGAAATTCAAATTGGT+AGG | 0.580291 | 2.4:+12037462 | MS.gene029045:CDS |
| GCACTGCGGTCCATCAGTAA+AGG | 0.583080 | 2.4:+12044136 | MS.gene029045:CDS |
| TGGTTCAAACAGCTTTGCAA+AGG | 0.585606 | 2.4:-12043757 | None:intergenic |
| GATATGTCCATAAATTTCAA+GGG | 0.590090 | 2.4:-12039971 | None:intergenic |
| TCTCCACATCCACCATGGCA+TGG | 0.590484 | 2.4:-12037725 | None:intergenic |
| GTCCATCAGTAAAGGAGAAG+AGG | 0.601601 | 2.4:+12044144 | MS.gene029045:CDS |
| GTTGTGGAATCGTTGATGAA+TGG | 0.612754 | 2.4:+12037653 | MS.gene029045:CDS |
| CTTTGCATGCAGGATAGAGA+TGG | 0.614349 | 2.4:+12044097 | MS.gene029045:intron |
| GAGTTCTGATCCAAGACGTA+GGG | 0.614600 | 2.4:+12038514 | MS.gene029045:CDS |
| TTCTGATCCAAGACGTAGGG+AGG | 0.621700 | 2.4:+12038517 | MS.gene029045:CDS |
| TCAAAGTGTCTGTAGGTGGT+GGG | 0.622876 | 2.4:+12039641 | MS.gene029045:intron |
| GAATCAACACTCTTTCAACA+AGG | 0.626409 | 2.4:+12037326 | MS.gene029045:CDS |
| TGCTGTAAAGGACTTCAAAG+AGG | 0.636104 | 2.4:+12037269 | MS.gene029045:CDS |
| TAAGACAGCAATATTTGACA+AGG | 0.637239 | 2.4:+12039834 | MS.gene029045:CDS |
| CAAGCTGTTCCATGCCATGG+TGG | 0.645326 | 2.4:+12037716 | MS.gene029045:CDS |
| AGAGTTCTGATCCAAGACGT+AGG | 0.667681 | 2.4:+12038513 | MS.gene029045:CDS |
| ACTTTACCTTTGCAGCAAGG+AGG | 0.669411 | 2.4:-12038695 | None:intergenic |
| ACTAAAGTTCCTCTACCCGA+AGG | 0.681829 | 2.4:+12037629 | MS.gene029045:CDS |
| AGTACAGAGTAAAGAATGGG+AGG | 0.682996 | 2.4:-12038486 | None:intergenic |
| AAGCTTCTCCACATCCACCA+TGG | 0.691170 | 2.4:-12037730 | None:intergenic |
| TTGTAGCATGTCATGTGCAG+AGG | 0.693250 | 2.4:+12038451 | MS.gene029045:intron |
| TAAAGCTTTCAAAAGAGACG+AGG | 0.709737 | 2.4:+12043798 | MS.gene029045:CDS |
| AAGCAATAATTATTGCACTG+CGG | 0.787000 | 2.4:+12044122 | MS.gene029045:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 12037010 | 12044165 | 12037010 | ID=MS.gene029045 |
| chr2.4 | mRNA | 12037010 | 12044165 | 12037010 | ID=MS.gene029045.t1;Parent=MS.gene029045 |
| chr2.4 | exon | 12037010 | 12037091 | 12037010 | ID=MS.gene029045.t1.exon1;Parent=MS.gene029045.t1 |
| chr2.4 | CDS | 12037010 | 12037091 | 12037010 | ID=cds.MS.gene029045.t1;Parent=MS.gene029045.t1 |
| chr2.4 | exon | 12037262 | 12037347 | 12037262 | ID=MS.gene029045.t1.exon2;Parent=MS.gene029045.t1 |
| chr2.4 | CDS | 12037262 | 12037347 | 12037262 | ID=cds.MS.gene029045.t1;Parent=MS.gene029045.t1 |
| chr2.4 | exon | 12037419 | 12037762 | 12037419 | ID=MS.gene029045.t1.exon3;Parent=MS.gene029045.t1 |
| chr2.4 | CDS | 12037419 | 12037762 | 12037419 | ID=cds.MS.gene029045.t1;Parent=MS.gene029045.t1 |
| chr2.4 | exon | 12038457 | 12038569 | 12038457 | ID=MS.gene029045.t1.exon4;Parent=MS.gene029045.t1 |
| chr2.4 | CDS | 12038457 | 12038569 | 12038457 | ID=cds.MS.gene029045.t1;Parent=MS.gene029045.t1 |
| chr2.4 | exon | 12038679 | 12038710 | 12038679 | ID=MS.gene029045.t1.exon5;Parent=MS.gene029045.t1 |
| chr2.4 | CDS | 12038679 | 12038710 | 12038679 | ID=cds.MS.gene029045.t1;Parent=MS.gene029045.t1 |
| chr2.4 | exon | 12039292 | 12039443 | 12039292 | ID=MS.gene029045.t1.exon6;Parent=MS.gene029045.t1 |
| chr2.4 | CDS | 12039292 | 12039443 | 12039292 | ID=cds.MS.gene029045.t1;Parent=MS.gene029045.t1 |
| chr2.4 | exon | 12039656 | 12039743 | 12039656 | ID=MS.gene029045.t1.exon7;Parent=MS.gene029045.t1 |
| chr2.4 | CDS | 12039656 | 12039743 | 12039656 | ID=cds.MS.gene029045.t1;Parent=MS.gene029045.t1 |
| chr2.4 | exon | 12039820 | 12039868 | 12039820 | ID=MS.gene029045.t1.exon8;Parent=MS.gene029045.t1 |
| chr2.4 | CDS | 12039820 | 12039868 | 12039820 | ID=cds.MS.gene029045.t1;Parent=MS.gene029045.t1 |
| chr2.4 | exon | 12039965 | 12040019 | 12039965 | ID=MS.gene029045.t1.exon9;Parent=MS.gene029045.t1 |
| chr2.4 | CDS | 12039965 | 12040019 | 12039965 | ID=cds.MS.gene029045.t1;Parent=MS.gene029045.t1 |
| chr2.4 | exon | 12040210 | 12040279 | 12040210 | ID=MS.gene029045.t1.exon10;Parent=MS.gene029045.t1 |
| chr2.4 | CDS | 12040210 | 12040279 | 12040210 | ID=cds.MS.gene029045.t1;Parent=MS.gene029045.t1 |
| chr2.4 | exon | 12040360 | 12040429 | 12040360 | ID=MS.gene029045.t1.exon11;Parent=MS.gene029045.t1 |
| chr2.4 | CDS | 12040360 | 12040429 | 12040360 | ID=cds.MS.gene029045.t1;Parent=MS.gene029045.t1 |
| chr2.4 | exon | 12043743 | 12043819 | 12043743 | ID=MS.gene029045.t1.exon12;Parent=MS.gene029045.t1 |
| chr2.4 | CDS | 12043743 | 12043819 | 12043743 | ID=cds.MS.gene029045.t1;Parent=MS.gene029045.t1 |
| chr2.4 | exon | 12044109 | 12044165 | 12044109 | ID=MS.gene029045.t1.exon13;Parent=MS.gene029045.t1 |
| chr2.4 | CDS | 12044109 | 12044165 | 12044109 | ID=cds.MS.gene029045.t1;Parent=MS.gene029045.t1 |
| Gene Sequence |
| Protein sequence |