AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene029074

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene029074.t1 MTR_1g116010 72.807 228 26 3 4 196 20 246 1.43e-110 316
MS.gene029074.t1 MTR_1g094930 48.062 258 64 11 6 195 74 329 5.00e-57 183
MS.gene029074.t1 MTR_1g094930 45.299 234 60 9 29 195 2 234 9.93e-47 154
MS.gene029074.t1 MTR_4g071590 40.933 193 93 5 4 196 119 290 1.29e-36 129
MS.gene029074.t1 MTR_4g471590 40.933 193 93 5 4 196 119 290 1.29e-36 129
MS.gene029074.t1 MTR_2g094600 45.665 173 64 5 30 186 129 287 1.09e-35 127
MS.gene029074.t1 MTR_8g013950 40.415 193 85 5 5 179 110 290 8.32e-35 125
MS.gene029074.t1 MTR_8g076340 39.896 193 90 5 10 190 113 291 1.43e-34 124
MS.gene029074.t1 MTR_1g006650 40.838 191 89 6 10 179 111 298 1.63e-33 122
MS.gene029074.t1 MTR_5g021340 37.668 223 95 6 5 190 158 373 1.38e-32 120
MS.gene029074.t1 MTR_3g117380 40.223 179 101 2 5 179 117 293 1.59e-32 119
MS.gene029074.t1 MTR_4g058910 75.385 65 16 0 115 179 314 378 1.13e-31 118
MS.gene029074.t1 MTR_3g109760 40.526 190 89 6 5 179 91 271 2.59e-31 116
MS.gene029074.t1 MTR_6g032830 71.642 67 19 0 114 180 191 257 9.28e-31 113
MS.gene029074.t1 MTR_1g046680 68.571 70 22 0 110 179 167 236 1.14e-30 112
MS.gene029074.t1 MTR_7g085410 68.116 69 22 0 112 180 185 253 7.00e-30 111
MS.gene029074.t1 MTR_5g007600 63.514 74 27 0 110 183 254 327 1.06e-29 112
MS.gene029074.t1 MTR_5g007600 62.319 69 26 0 110 178 152 220 1.64e-26 103
MS.gene029074.t1 MTR_7g446110 61.290 62 24 0 115 176 187 248 3.86e-21 87.8
MS.gene029074.t1 MTR_7g445980 62.712 59 21 1 119 176 37 95 2.16e-19 79.3
MS.gene029074.t1 MTR_7g445950 51.515 66 32 0 111 176 116 181 2.51e-18 79.0
MS.gene029074.t1 MTR_7g446070 51.515 66 32 0 111 176 128 193 8.00e-18 77.8
MS.gene029074.t1 MTR_4g039780 71.642 67 19 0 24 90 13 79 2.77e-15 68.9
MS.gene029074.t1 MTR_5g020230 44.444 54 30 0 94 147 101 154 6.74e-12 62.8
MS.gene029074.t1 MTR_7g112330 54.348 46 20 1 108 152 14 59 3.73e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene029074.t1 AT4G36240 41.209 182 90 3 5 185 69 234 3.37e-38 132
MS.gene029074.t1 AT3G54810 77.778 72 16 0 114 185 228 299 5.77e-35 125
MS.gene029074.t1 AT3G54810 77.778 72 16 0 114 185 228 299 5.77e-35 125
MS.gene029074.t1 AT5G66320 37.445 227 101 7 4 193 107 329 1.47e-34 125
MS.gene029074.t1 AT5G66320 37.445 227 101 7 4 193 107 329 1.47e-34 125
MS.gene029074.t1 AT3G24050 59.794 97 33 1 93 189 178 268 2.05e-34 123
MS.gene029074.t1 AT1G08010 69.231 78 21 1 109 186 214 288 2.77e-34 123
MS.gene029074.t1 AT1G08010 69.231 78 21 1 109 186 214 288 2.77e-34 123
MS.gene029074.t1 AT1G08010 69.231 78 21 1 109 186 214 288 2.77e-34 123
MS.gene029074.t1 AT1G08000 50.000 136 52 4 59 179 148 282 2.95e-32 118
MS.gene029074.t1 AT1G08000 50.000 136 52 4 59 179 148 282 2.95e-32 118
MS.gene029074.t1 AT4G32890 38.298 188 102 4 5 179 75 261 1.06e-31 117
MS.gene029074.t1 AT4G34680 38.071 197 70 6 6 189 97 254 1.59e-31 115
MS.gene029074.t1 AT4G34680 38.071 197 70 6 6 189 97 254 1.59e-31 115
MS.gene029074.t1 AT3G60530 38.462 195 82 5 5 193 72 234 2.17e-31 114
MS.gene029074.t1 AT5G25830 40.777 206 82 7 10 179 82 283 3.86e-31 115
MS.gene029074.t1 AT3G51080 66.667 75 23 1 115 189 221 293 5.34e-31 115
MS.gene029074.t1 AT2G45050 39.691 194 86 6 5 183 74 251 5.66e-31 114
MS.gene029074.t1 AT2G28340 67.606 71 20 1 117 187 193 260 2.55e-29 110
MS.gene029074.t1 AT3G45170 54.545 77 35 0 107 183 107 183 1.52e-27 103

Find 52 sgRNAs with CRISPR-Local

Find 122 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGGGTGAACTTATGCTTTC+AGG 0.155842 1.3:-79121378 None:intergenic
CTAGCAACAGGCCGGTATTC+AGG 0.202243 1.3:-79121699 None:intergenic
GGGAAATGACATTCTTTCAT+TGG 0.338146 1.3:+79121251 MS.gene029074:intron
AAAAGAATCGTCCACAATAT+CGG 0.373139 1.3:-79121283 None:intergenic
AGACGCAAGGATAATAATTC+TGG 0.376327 1.3:+79121786 MS.gene029074:CDS
GTCTCATCACTCTCATTTCA+AGG 0.395161 1.3:-79121767 None:intergenic
GAAAATGTTGGGCTAGCAAC+AGG 0.436477 1.3:-79121711 None:intergenic
TAATTCTGGTATTCTCGCCT+TGG 0.441508 1.3:+79121800 MS.gene029074:CDS
TAGCAACAGGCCGGTATTCA+GGG 0.446393 1.3:-79121698 None:intergenic
TCTGCAATGCTTGCGGCGTT+CGG 0.448102 1.3:+79121655 MS.gene029074:CDS
GCGCCTCTTCTTGCTGCTCC+AGG 0.448261 1.3:+79121537 MS.gene029074:CDS
TGGGTGAACTTATGCTTTCA+GGG 0.452416 1.3:-79121377 None:intergenic
CAATGGAGGTCAGGGCCAGA+GGG 0.460506 1.3:+79121621 MS.gene029074:CDS
TGACCTCCATTGTGGTGTCT+TGG 0.470363 1.3:-79121610 None:intergenic
TGCGGCGTTCGGTACAAGTC+AGG 0.475560 1.3:+79121666 MS.gene029074:CDS
AAGACACCACAATGGAGGTC+AGG 0.476853 1.3:+79121612 MS.gene029074:CDS
ATGACATTCTTTCATTGGAA+TGG 0.478423 1.3:+79121256 MS.gene029074:CDS
ACCAAAGTATTATGATCTCC+TGG 0.478922 1.3:-79121555 None:intergenic
GGACTCTAGAGAAGAGGAAG+TGG 0.484892 1.3:-79121493 None:intergenic
GCCGACTTTGCCCTGAATAC+CGG 0.496140 1.3:+79121688 MS.gene029074:CDS
GGTTGCAAGACGTGTACGCT+TGG 0.509630 1.3:-79121433 None:intergenic
ACAATGGAGGTCAGGGCCAG+AGG 0.512229 1.3:+79121620 MS.gene029074:CDS
GCTCAACTTCTTTCAATGTG+AGG 0.512743 1.3:-79121314 None:intergenic
TCCAGGAGATCATAATACTT+TGG 0.514433 1.3:+79121554 MS.gene029074:CDS
GAAGATCCGGAGAAAATGTT+GGG 0.515937 1.3:-79121722 None:intergenic
TGAGTTGCATGGTTGAATGA+TGG 0.525185 1.3:-79121464 None:intergenic
TGTGAGTTAGAGTGAAGATC+CGG 0.525870 1.3:-79121735 None:intergenic
TGAAGATCCGGAGAAAATGT+TGG 0.538158 1.3:-79121723 None:intergenic
GAGTTGCATGGTTGAATGAT+GGG 0.547753 1.3:-79121463 None:intergenic
TCCTTGTTCACTGACGATGA+TGG 0.555427 1.3:-79121342 None:intergenic
CTCCCTTCACACGTATTCCA+AGG 0.557994 1.3:-79121817 None:intergenic
ACCATCATCGTCAGTGAACA+AGG 0.562264 1.3:+79121341 MS.gene029074:CDS
CTTCTTGGACTCTAGAGAAG+AGG 0.565275 1.3:-79121499 None:intergenic
GGAATGGCAGTCCGATATTG+TGG 0.569142 1.3:+79121272 MS.gene029074:CDS
GACTCTAGAGAAGAGGAAGT+GGG 0.570792 1.3:-79121492 None:intergenic
TCGCCTTGGAATACGTGTGA+AGG 0.571882 1.3:+79121814 MS.gene029074:CDS
TCTGGCCCTGACCTCCATTG+TGG 0.574213 1.3:-79121618 None:intergenic
GCCGGTATTCAGGGCAAAGT+CGG 0.582975 1.3:-79121689 None:intergenic
AGACACCACAATGGAGGTCA+GGG 0.625833 1.3:+79121613 MS.gene029074:CDS
AAAACACTCTGCAATGCTTG+CGG 0.632438 1.3:+79121648 MS.gene029074:CDS
ATGTTGGGCTAGCAACAGGC+CGG 0.635385 1.3:-79121707 None:intergenic
TCTCCTGGAGCAGCAAGAAG+AGG 0.648108 1.3:-79121540 None:intergenic
AATGGAGGTCAGGGCCAGAG+GGG 0.649887 1.3:+79121622 MS.gene029074:CDS
AGTTGCATGGTTGAATGATG+GGG 0.654848 1.3:-79121462 None:intergenic
CGACCAAGACACCACAATGG+AGG 0.657049 1.3:+79121607 MS.gene029074:CDS
AATGAGAGTGATGAGACGCA+AGG 0.663400 1.3:+79121773 MS.gene029074:CDS
AGTGGGAGAAATGAGTTGCA+TGG 0.665035 1.3:-79121475 None:intergenic
AGGCGACCAAGACACCACAA+TGG 0.710774 1.3:+79121604 MS.gene029074:CDS
GAAGAAATGCATGCATTGTG+AGG 0.712899 1.3:+79121584 MS.gene029074:CDS
GTTGCATGGTTGAATGATGG+GGG 0.728694 1.3:-79121461 None:intergenic
GGAGCGTGTACGTCTCACTG+TGG 0.764287 1.3:-79121412 None:intergenic
ATCATCGTCAGTGAACAAGG+AGG 0.776115 1.3:+79121344 MS.gene029074:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAATCAATTATATGT+TGG + chr1.3:79120151-79120170 MS.gene029074:intron 10.0%
!! TAAAATAAAAAATTGTGATT+TGG - chr1.3:79119965-79119984 None:intergenic 10.0%
!! TATGTAAATATTAAATATTC+CGG + chr1.3:79119837-79119856 MS.gene029074:intron 10.0%
!! TTAATTACAATTAAAATGAA+TGG - chr1.3:79120244-79120263 None:intergenic 10.0%
!! AATTGCTAGAATATATATAA+TGG - chr1.3:79119651-79119670 None:intergenic 15.0%
!! AATTTAAATTCTTCAACAAA+TGG - chr1.3:79120112-79120131 None:intergenic 15.0%
!! ATCAATTACTATTAAAATGA+AGG + chr1.3:79120817-79120836 MS.gene029074:intron 15.0%
!! ATGTAAATATTAAATATTCC+GGG + chr1.3:79119838-79119857 MS.gene029074:intron 15.0%
!! TATCAGGAAAAAAAAAAAAA+AGG - chr1.3:79120532-79120551 None:intergenic 15.0%
!! TATCTTTATGAAAACTTATT+TGG + chr1.3:79119733-79119752 MS.gene029074:intron 15.0%
!! TCAATTACTATTAAAATGAA+GGG + chr1.3:79120818-79120837 MS.gene029074:intron 15.0%
!!! ATATGAATTTTTTTTACAAG+TGG - chr1.3:79119775-79119794 None:intergenic 15.0%
!!! TATAATATTTGTTATAGTGA+GGG + chr1.3:79120278-79120297 MS.gene029074:intron 15.0%
!!! TGATGATATTTATTGATTTA+CGG - chr1.3:79121048-79121067 None:intergenic 15.0%
!!! TTATAATATTTGTTATAGTG+AGG + chr1.3:79120277-79120296 MS.gene029074:intron 15.0%
!!! TTCATTTTAATAGTAATTGA+TGG - chr1.3:79120818-79120837 None:intergenic 15.0%
!! ATAATGAACTTTCAAAATGT+TGG + chr1.3:79119918-79119937 MS.gene029074:intron 20.0%
!! ATTCCCAAAAATCAAAATTA+GGG - chr1.3:79120608-79120627 None:intergenic 20.0%
!! TAACTCTAAATAGTTATTCT+TGG + chr1.3:79120854-79120873 MS.gene029074:intron 20.0%
!! TATTAAAACTAACAAAGCTT+AGG - chr1.3:79121196-79121215 None:intergenic 20.0%
!! TCACGATAATTGAATATATT+AGG + chr1.3:79120383-79120402 MS.gene029074:intron 20.0%
!! TGAAAGTTCATTATTTAGTT+AGG - chr1.3:79119912-79119931 None:intergenic 20.0%
!!! AAACCCTAATTTTGATTTTT+GGG + chr1.3:79120602-79120621 MS.gene029074:intron 20.0%
!!! CAAATCACAATTTTTTTTAG+AGG + chr1.3:79119998-79120017 MS.gene029074:intron 20.0%
!!! CTACAAAGATTTTTTGTAAA+TGG - chr1.3:79120912-79120931 None:intergenic 20.0%
!!! CTCTAAAAAAAATTGTGATT+TGG - chr1.3:79120000-79120019 None:intergenic 20.0%
!!! GATTTTTACGTTTTCAATAT+AGG + chr1.3:79120494-79120513 MS.gene029074:intron 20.0%
!!! TAAACCCTAATTTTGATTTT+TGG + chr1.3:79120601-79120620 MS.gene029074:intron 20.0%
! ATTTCCCTGTAATAATAACA+AGG - chr1.3:79121238-79121257 None:intergenic 25.0%
! CAAGAAGAAAAAGAAAACAA+AGG + chr1.3:79121515-79121534 MS.gene029074:CDS 25.0%
! CATTCCCAAAAATCAAAATT+AGG - chr1.3:79120609-79120628 None:intergenic 25.0%
! CTAAGCAGTATCTATATAAA+TGG + chr1.3:79120059-79120078 MS.gene029074:intron 25.0%
! TAAAATGAATGGTCAAGATT+TGG - chr1.3:79120233-79120252 None:intergenic 25.0%
! TACAAAGACGATTGAAAAAT+TGG + chr1.3:79120736-79120755 MS.gene029074:intron 25.0%
!!! ATCAACCTTGTTATTATTAC+AGG + chr1.3:79121230-79121249 MS.gene029074:intron 25.0%
!!! ATTTGTTAAGCCTAGTTTTA+TGG - chr1.3:79121157-79121176 None:intergenic 25.0%
!!! CTTTGTTTTCTTTTTCTTCT+TGG - chr1.3:79121517-79121536 None:intergenic 25.0%
!!! TCAACCTTGTTATTATTACA+GGG + chr1.3:79121231-79121250 MS.gene029074:intron 25.0%
AAAAGAATCGTCCACAATAT+CGG - chr1.3:79121286-79121305 None:intergenic 30.0%
ATACACAAGATCAAAGATGA+AGG + chr1.3:79120760-79120779 MS.gene029074:intron 30.0%
ATGACATTCTTTCATTGGAA+TGG + chr1.3:79121256-79121275 MS.gene029074:CDS 30.0%
CAAAGTAACATAAAATCACC+CGG - chr1.3:79119859-79119878 None:intergenic 30.0%
CTTCTAGTATAATTCAACGA+TGG - chr1.3:79120951-79120970 None:intergenic 30.0%
GAATCAATAAATCGCATCAT+GGG - chr1.3:79121084-79121103 None:intergenic 30.0%
TAAAATGAAGGGACATGATT+TGG + chr1.3:79120829-79120848 MS.gene029074:intron 30.0%
TATTTGTGCACCATAAAACT+AGG + chr1.3:79121144-79121163 MS.gene029074:intron 30.0%
TGAATCAATAAATCGCATCA+TGG - chr1.3:79121085-79121104 None:intergenic 30.0%
! GGTAAATACTTCTAAGAGAA+GGG - chr1.3:79120891-79120910 None:intergenic 30.0%
! TGGTAAATACTTCTAAGAGA+AGG - chr1.3:79120892-79120911 None:intergenic 30.0%
!! GATGCGATTTATTGATTCAA+TGG + chr1.3:79121086-79121105 MS.gene029074:intron 30.0%
AGAAACATCATTACTGTCCA+AGG + chr1.3:79120648-79120667 MS.gene029074:intron 35.0%
AGACGCAAGGATAATAATTC+TGG + chr1.3:79121786-79121805 MS.gene029074:CDS 35.0%
GGGAAATGACATTCTTTCAT+TGG + chr1.3:79121251-79121270 MS.gene029074:intron 35.0%
GTAATGATGTTTCTTCTCTG+TGG - chr1.3:79120642-79120661 None:intergenic 35.0%
TCCAGGAGATCATAATACTT+TGG + chr1.3:79121554-79121573 MS.gene029074:CDS 35.0%
TGGAGTTTAGAAGTAGAGAA+GGG + chr1.3:79120171-79120190 MS.gene029074:intron 35.0%
TTGGAGTTTAGAAGTAGAGA+AGG + chr1.3:79120170-79120189 MS.gene029074:intron 35.0%
! ACCAAAGTATTATGATCTCC+TGG - chr1.3:79121558-79121577 None:intergenic 35.0%
! ACTGTGGTATTTTCACAAGT+GGG - chr1.3:79121399-79121418 None:intergenic 35.0%
! GTATCAATGGCCATGTTTTT+CGG - chr1.3:79120337-79120356 None:intergenic 35.0%
! TCTTGATGCAGCTTTTGTAA+TGG - chr1.3:79120569-79120588 None:intergenic 35.0%
!! GAGTTTCAGGTTTGTATCAA+TGG - chr1.3:79120350-79120369 None:intergenic 35.0%
!!! TTTTGTCCTCTTTAGAACCT+TGG - chr1.3:79120668-79120687 None:intergenic 35.0%
AAAACACTCTGCAATGCTTG+CGG + chr1.3:79121648-79121667 MS.gene029074:CDS 40.0%
AAGAAGACAAGAGTAGTAGC+AGG - chr1.3:79120435-79120454 None:intergenic 40.0%
AGAGTTACTCTTGCAGTCAA+TGG - chr1.3:79120199-79120218 None:intergenic 40.0%
AGTTGCATGGTTGAATGATG+GGG - chr1.3:79121465-79121484 None:intergenic 40.0%
CATGTGATGATTACGTGAAG+TGG + chr1.3:79119879-79119898 MS.gene029074:intron 40.0%
GAAGAAATGCATGCATTGTG+AGG + chr1.3:79121584-79121603 MS.gene029074:CDS 40.0%
GAAGATCCGGAGAAAATGTT+GGG - chr1.3:79121725-79121744 None:intergenic 40.0%
GAGTTGCATGGTTGAATGAT+GGG - chr1.3:79121466-79121485 None:intergenic 40.0%
GCTCAACTTCTTTCAATGTG+AGG - chr1.3:79121317-79121336 None:intergenic 40.0%
GTCTCATCACTCTCATTTCA+AGG - chr1.3:79121770-79121789 None:intergenic 40.0%
TAATTCTGGTATTCTCGCCT+TGG + chr1.3:79121800-79121819 MS.gene029074:CDS 40.0%
TCAAGTCTGACCGAAAAACA+TGG + chr1.3:79120324-79120343 MS.gene029074:intron 40.0%
TGAAGATCCGGAGAAAATGT+TGG - chr1.3:79121726-79121745 None:intergenic 40.0%
TGAGTTGCATGGTTGAATGA+TGG - chr1.3:79121467-79121486 None:intergenic 40.0%
TGGGTGAACTTATGCTTTCA+GGG - chr1.3:79121380-79121399 None:intergenic 40.0%
TGTGAGTTAGAGTGAAGATC+CGG - chr1.3:79121738-79121757 None:intergenic 40.0%
! CACTGTGGTATTTTCACAAG+TGG - chr1.3:79121400-79121419 None:intergenic 40.0%
! TTTTCGGTCAGACTTGAGAA+AGG - chr1.3:79120321-79120340 None:intergenic 40.0%
!! TACTGTCCAAGGTTCTAAAG+AGG + chr1.3:79120659-79120678 MS.gene029074:intron 40.0%
!! TTCTTTGAAGCACGAGTTTC+AGG - chr1.3:79120363-79120382 None:intergenic 40.0%
AATGAGAGTGATGAGACGCA+AGG + chr1.3:79121773-79121792 MS.gene029074:CDS 45.0%
ACCATCATCGTCAGTGAACA+AGG + chr1.3:79121341-79121360 MS.gene029074:CDS 45.0%
AGTGGGAGAAATGAGTTGCA+TGG - chr1.3:79121478-79121497 None:intergenic 45.0%
ATCATCGTCAGTGAACAAGG+AGG + chr1.3:79121344-79121363 MS.gene029074:CDS 45.0%
GATGAAAAATCACACACGCG+CGG - chr1.3:79121026-79121045 None:intergenic 45.0%
GGCAGACAACACAAGATATC+AGG - chr1.3:79120548-79120567 None:intergenic 45.0%
GTGGGTGAACTTATGCTTTC+AGG - chr1.3:79121381-79121400 None:intergenic 45.0%
GTTGCATGGTTGAATGATGG+GGG - chr1.3:79121464-79121483 None:intergenic 45.0%
TCCTTGTTCACTGACGATGA+TGG - chr1.3:79121345-79121364 None:intergenic 45.0%
! CTTCTTGGACTCTAGAGAAG+AGG - chr1.3:79121502-79121521 None:intergenic 45.0%
! GACTCTAGAGAAGAGGAAGT+GGG - chr1.3:79121495-79121514 None:intergenic 45.0%
! TGCTAGCCCAACATTTTCTC+CGG + chr1.3:79121716-79121735 MS.gene029074:CDS 45.0%
!! GAAAATGTTGGGCTAGCAAC+AGG - chr1.3:79121714-79121733 None:intergenic 45.0%
!! TTAAAAATTAACTTAAAATA+GGG - chr1.3:79119711-79119730 None:intergenic 5.0%
!! TTTAAAAATTAACTTAAAAT+AGG - chr1.3:79119712-79119731 None:intergenic 5.0%
AAGACACCACAATGGAGGTC+AGG + chr1.3:79121612-79121631 MS.gene029074:CDS 50.0%
AGACACCACAATGGAGGTCA+GGG + chr1.3:79121613-79121632 MS.gene029074:CDS 50.0%
GGAATGGCAGTCCGATATTG+TGG + chr1.3:79121272-79121291 MS.gene029074:CDS 50.0%
TAGCAACAGGCCGGTATTCA+GGG - chr1.3:79121701-79121720 None:intergenic 50.0%
TGACCTCCATTGTGGTGTCT+TGG - chr1.3:79121613-79121632 None:intergenic 50.0%
! GGACTCTAGAGAAGAGGAAG+TGG - chr1.3:79121496-79121515 None:intergenic 50.0%
AGGCGACCAAGACACCACAA+TGG + chr1.3:79121604-79121623 MS.gene029074:CDS 55.0%
CGACCAAGACACCACAATGG+AGG + chr1.3:79121607-79121626 MS.gene029074:CDS 55.0%
CTAGCAACAGGCCGGTATTC+AGG - chr1.3:79121702-79121721 None:intergenic 55.0%
GCCGGTATTCAGGGCAAAGT+CGG - chr1.3:79121692-79121711 None:intergenic 55.0%
GGTTGCAAGACGTGTACGCT+TGG - chr1.3:79121436-79121455 None:intergenic 55.0%
TCTCCTGGAGCAGCAAGAAG+AGG - chr1.3:79121543-79121562 None:intergenic 55.0%
TCTGCAATGCTTGCGGCGTT+CGG + chr1.3:79121655-79121674 MS.gene029074:CDS 55.0%
! GCCGACTTTGCCCTGAATAC+CGG + chr1.3:79121688-79121707 MS.gene029074:CDS 55.0%
! GGTTGAATGATGGGGGCTGA+AGG - chr1.3:79121457-79121476 None:intergenic 55.0%
!! ATGTTGGGCTAGCAACAGGC+CGG - chr1.3:79121710-79121729 None:intergenic 55.0%
!! CAGAGTGTTTTCAGCCCCTC+TGG - chr1.3:79121639-79121658 None:intergenic 55.0%
AATGGAGGTCAGGGCCAGAG+GGG + chr1.3:79121622-79121641 MS.gene029074:CDS 60.0%
ACAATGGAGGTCAGGGCCAG+AGG + chr1.3:79121620-79121639 MS.gene029074:CDS 60.0%
CAATGGAGGTCAGGGCCAGA+GGG + chr1.3:79121621-79121640 MS.gene029074:CDS 60.0%
GGAGCGTGTACGTCTCACTG+TGG - chr1.3:79121415-79121434 None:intergenic 60.0%
TCTGGCCCTGACCTCCATTG+TGG - chr1.3:79121621-79121640 None:intergenic 60.0%
TGCGGCGTTCGGTACAAGTC+AGG + chr1.3:79121666-79121685 MS.gene029074:CDS 60.0%
GCGCCTCTTCTTGCTGCTCC+AGG + chr1.3:79121537-79121556 MS.gene029074:CDS 65.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 79119594 79121833 79119594 ID=MS.gene029074
chr1.3 mRNA 79119594 79121833 79119594 ID=MS.gene029074.t1;Parent=MS.gene029074
chr1.3 exon 79119594 79119602 79119594 ID=MS.gene029074.t1.exon1;Parent=MS.gene029074.t1
chr1.3 CDS 79119594 79119602 79119594 ID=cds.MS.gene029074.t1;Parent=MS.gene029074.t1
chr1.3 exon 79121252 79121833 79121252 ID=MS.gene029074.t1.exon2;Parent=MS.gene029074.t1
chr1.3 CDS 79121252 79121833 79121252 ID=cds.MS.gene029074.t1;Parent=MS.gene029074.t1
Gene Sequence

>MS.gene029074

ATGTCTTCTGTAAAAAAAATGTCTTTTTTTATTAAAAATAAAAATGTCTTGTTACCATTATATATATTCTAGCAATTTAAATTTTTTATACTACATTCAATCAAATCACTTCGTCCCTATTTTAAGTTAATTTTTAAAATATCTTTATGAAAACTTATTTGGTATAATTTAATTGTATCCACTTGTAAAAAAAATTCATATCACACTATACTATCACTTTTTTAAGTAGATTTCTAAAATATCTATGTAAATATTAAATATTCCGGGTGATTTTATGTTACTTTGCATGTGATGATTACGTGAAGTGGACACTAACCTAACTAAATAATGAACTTTCAAAATGTTGGTCAATGATAATTTAATTCATACCAAATCACAATTTTTTATTTTATTTTAATTCATACCAAATCACAATTTTTTTTAGAGGAAATCACTAATATACTTTCTTTTGTGTTATATGCTCTACTAAGCAGTATCTATATAAATGGCTGTGTTTATACTTTTGCATATACAATCCATTTGTTGAAGAATTTAAATTTAATACAGTTATTAAAGAAAAAAAAAATCAATTATATGTTGGAGTTTAGAAGTAGAGAAGGGATCCATTGACTGCAAGAGTAACTCTTCATAGTTACTCCAAATCTTGACCATTCATTTTAATTGTAATTAATGACTATGATTAATTATAATATTTGTTATAGTGAGGGTTACTTTTTATTTCTCTCCTTTCTCAAGTCTGACCGAAAAACATGGCCATTGATACAAACCTGAAACTCGTGCTTCAAAGAATCACGATAATTGAATATATTAGGAGATTAAGAGACTTTAGCAATATGAACCTGCTACTACTCTTGTCTTCTTATCATGAAAAACAAAAATTAATATCTAACAATAGCTACTGATTTTTACGTTTTCAATATAGGAACACGCTGAAGCCTTTTTTTTTTTTTTCCTGATATCTTGTGTTGTCTGCCATTACAAAAGCTGCATCAAGATTGTGCATCAATTAAACCCTAATTTTGATTTTTGGGAATGAAAAAAAAAACCACAGAGAAGAAACATCATTACTGTCCAAGGTTCTAAAGAGGACAAAATTGAATTTCAAAAACTGAAAATCAAAAGTGTTAGAGAAAGAGTGTGTGTACAAAGACGATTGAAAAATTGGAATACACAAGATCAAAGATGAAGGAACACACTAATAATTATTATAATTAATCATAGCCATCAATTACTATTAAAATGAAGGGACATGATTTGGAATAACTCTAAATAGTTATTCTTGGAGTCAATGAATCCCTTCTCTTAGAAGTATTTACCATTTACAAAAAATCTTTGTAGTGAATATTAGTTATATCCATCGTTGAATTATACTAGAAGTCGTAATAACAAATTTTGTTTAATATGCACAAGTAAAATAGTCTTACATCATCCGCGCGTGTGTGATTTTTCATCCGTAAATCAATAAATATCATCATATCTTAGTTGATCCCATGATGCGATTTATTGATTCAATGGTCAAAAATAAGTTGTGTTTGATGCAAAACTTATCTTATTTGTGCACCATAAAACTAGGCTTAACAAATAGTATGAAAATCTGAGCCTAAGCTTTGTTAGTTTTAATAAAAGTGTGATTTTGATCAACCTTGTTATTATTACAGGGAAATGACATTCTTTCATTGGAATGGCAGTCCGATATTGTGGACGATTCTTTTGATGAGAGCCTCACATTGAAAGAAGTTGAGCAACAACCATCATCGTCAGTGAACAAGGAGGATTTTGTACTCCCTGAAAGCATAAGTTCACCCACTTGTGAAAATACCACAGTGAGACGTACACGCTCCAAGCGTACACGTCTTGCAACCTTCAGCCCCCATCATTCAACCATGCAACTCATTTCTCCCACTTCCTCTTCTCTAGAGTCCAAGAAGAAAAAGAAAACAAAGGCGCCTCTTCTTGCTGCTCCAGGAGATCATAATACTTTGGTACTTGTGAAGAAATGCATGCATTGTGAGGCGACCAAGACACCACAATGGAGGTCAGGGCCAGAGGGGCTGAAAACACTCTGCAATGCTTGCGGCGTTCGGTACAAGTCAGGCCGACTTTGCCCTGAATACCGGCCTGTTGCTAGCCCAACATTTTCTCCGGATCTTCACTCTAACTCACATAAGAAGATCCTTGAAATGAGAGTGATGAGACGCAAGGATAATAATTCTGGTATTCTCGCCTTGGAATACGTGTGA
Protein sequence

>MS.gene029074.t1

MSSGNDILSLEWQSDIVDDSFDESLTLKEVEQQPSSSVNKEDFVLPESISSPTCENTTVRRTRSKRTRLATFSPHHSTMQLISPTSSSLESKKKKKTKAPLLAAPGDHNTLVLVKKCMHCEATKTPQWRSGPEGLKTLCNACGVRYKSGRLCPEYRPVASPTFSPDLHSNSHKKILEMRVMRRKDNNSGILALEYV