Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene029122.t1 | KHN11326.1 | 69.5 | 177 | 48 | 3 | 246 | 417 | 1 | 176 | 7.20E-57 | 231.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene029122.t1 | Q9SY66 | 41.4 | 99 | 49 | 2 | 328 | 417 | 30 | 128 | 1.4e-13 | 79.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene029122.t1 | A0A0B2RR75 | 69.3 | 176 | 48 | 3 | 247 | 417 | 4 | 178 | 1.5e-56 | 229.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene029122.t1 | TF | FAR1 |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene029122.t1 | MTR_1g115435 | 65.497 | 171 | 21 | 3 | 87 | 222 | 18 | 185 | 9.60e-70 | 219 |
MS.gene029122.t1 | MTR_4g035820 | 58.333 | 168 | 53 | 5 | 251 | 417 | 1 | 152 | 2.98e-52 | 186 |
MS.gene029122.t1 | MTR_1g035390 | 89.535 | 86 | 2 | 1 | 1 | 86 | 1 | 79 | 1.30e-42 | 145 |
MS.gene029122.t1 | MTR_4g122150 | 88.372 | 86 | 3 | 1 | 1 | 86 | 1 | 79 | 4.29e-42 | 143 |
MS.gene029122.t1 | MTR_6g074120 | 87.013 | 77 | 3 | 1 | 1 | 77 | 1 | 70 | 1.25e-35 | 126 |
MS.gene029122.t1 | MTR_0003s0080 | 85.714 | 77 | 4 | 1 | 1 | 77 | 57 | 126 | 6.26e-35 | 127 |
MS.gene029122.t1 | MTR_7g068540 | 86.301 | 73 | 3 | 1 | 14 | 86 | 1 | 66 | 1.17e-31 | 115 |
MS.gene029122.t1 | MTR_1g115440 | 36.364 | 198 | 59 | 7 | 88 | 222 | 23 | 216 | 2.64e-21 | 92.4 |
MS.gene029122.t1 | MTR_0150s0010 | 34.197 | 193 | 68 | 5 | 89 | 222 | 23 | 215 | 3.23e-19 | 86.7 |
MS.gene029122.t1 | MTR_8g044880 | 50.476 | 105 | 32 | 6 | 132 | 222 | 155 | 253 | 3.29e-19 | 87.4 |
MS.gene029122.t1 | MTR_8g445860 | 36.126 | 191 | 64 | 6 | 89 | 222 | 26 | 215 | 4.68e-19 | 86.3 |
MS.gene029122.t1 | MTR_8g445910 | 48.454 | 97 | 30 | 6 | 132 | 214 | 155 | 245 | 3.21e-15 | 75.9 |
MS.gene029122.t1 | MTR_1g115470 | 43.636 | 110 | 43 | 6 | 128 | 222 | 178 | 283 | 7.86e-15 | 76.3 |
MS.gene029122.t1 | MTR_8g445870 | 44.186 | 86 | 15 | 2 | 87 | 140 | 18 | 102 | 2.31e-12 | 63.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene029122.t1 | AT1G10240 | 44.048 | 84 | 44 | 1 | 337 | 417 | 45 | 128 | 1.38e-18 | 88.6 |
MS.gene029122.t1 | AT1G10240 | 44.048 | 84 | 44 | 1 | 337 | 417 | 45 | 128 | 1.38e-18 | 88.6 |
MS.gene029122.t1 | AT5G28530 | 43.210 | 81 | 45 | 1 | 338 | 417 | 53 | 133 | 2.01e-13 | 72.8 |
MS.gene029122.t1 | AT5G28530 | 43.210 | 81 | 45 | 1 | 338 | 417 | 53 | 133 | 2.01e-13 | 72.8 |
MS.gene029122.t1 | AT5G28530 | 43.210 | 81 | 45 | 1 | 338 | 417 | 53 | 133 | 2.07e-13 | 72.4 |
MS.gene029122.t1 | AT5G28530 | 43.210 | 81 | 45 | 1 | 338 | 417 | 53 | 133 | 2.24e-13 | 72.4 |
MS.gene029122.t1 | AT5G28530 | 43.210 | 81 | 45 | 1 | 338 | 417 | 53 | 133 | 2.25e-13 | 72.4 |
Find 55 sgRNAs with CRISPR-Local
Find 252 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GAAGAAGTTACTTTAGAAAA+TGG | 0.196031 | 1.3:+78588551 | MS.gene029122:CDS |
TTCATCTTCTTCAGTTTGTT+TGG | 0.228699 | 1.3:-78584268 | None:intergenic |
CTTCTTCAGTTTGTTTGGAT+TGG | 0.260942 | 1.3:-78584263 | None:intergenic |
AACATGTTTCACTTGTCTTT+TGG | 0.271381 | 1.3:+78585102 | MS.gene029122:CDS |
TTTGGGCTACATTGTTTGTT+TGG | 0.301936 | 1.3:+78585884 | MS.gene029122:CDS |
AAATGTAACTTTCATGTTGA+TGG | 0.305292 | 1.3:+78585422 | MS.gene029122:CDS |
AACTTCAATATCAAACAAAT+TGG | 0.327921 | 1.3:+78585498 | MS.gene029122:CDS |
GGTAGATTCATCAAACAAAA+TGG | 0.329127 | 1.3:+78588836 | MS.gene029122:CDS |
CTTGTTTCTCTACGATTCAT+AGG | 0.376530 | 1.3:-78585378 | None:intergenic |
CGAGAAATTGTGGTTGAGTT+TGG | 0.379695 | 1.3:+78585528 | MS.gene029122:CDS |
TGTCAAAATCATAAGAATCT+TGG | 0.381564 | 1.3:-78584125 | None:intergenic |
CAACAACGTCAACGTGCATT+TGG | 0.382445 | 1.3:+78585152 | MS.gene029122:CDS |
CATCATAAGGGCATCCATTT+GGG | 0.385511 | 1.3:-78585302 | None:intergenic |
ACATCATAAGGGCATCCATT+TGG | 0.388279 | 1.3:-78585303 | None:intergenic |
TCACATGATGCAACATCATA+AGG | 0.394084 | 1.3:-78585315 | None:intergenic |
CCCAGTCCAAGACACTTGTT+TGG | 0.397137 | 1.3:+78585929 | MS.gene029122:CDS |
ATCTCAACATCTTGACTAGA+AGG | 0.417447 | 1.3:-78588674 | None:intergenic |
TCTAAAGTAACTTCTTCTAC+TGG | 0.417760 | 1.3:-78588545 | None:intergenic |
AGTCAAGATGTTGAGATGAA+TGG | 0.418700 | 1.3:+78588680 | MS.gene029122:CDS |
CTCTGATGCAACACTATCAT+AGG | 0.423087 | 1.3:-78584172 | None:intergenic |
CATGTTTAAGAGAGAGTCTA+TGG | 0.428749 | 1.3:-78585085 | None:intergenic |
GTGTTAGAAATTGATGAAAT+CGG | 0.428988 | 1.3:+78588626 | MS.gene029122:CDS |
GTCAAGATGTTGAGATGAAT+GGG | 0.435675 | 1.3:+78588681 | MS.gene029122:CDS |
TAGAACCTCTTTGAAAATCA+TGG | 0.444579 | 1.3:+78588898 | MS.gene029122:CDS |
AATAATTGAAATTGCTGAGA+TGG | 0.446939 | 1.3:-78585463 | None:intergenic |
AGGAAAATTTGACCAACAAA+AGG | 0.448625 | 1.3:-78588746 | None:intergenic |
TCAAAGAGGTTCTACCTTCA+CGG | 0.449952 | 1.3:-78588889 | None:intergenic |
CGAATGCTTCTTCCTCACTT+AGG | 0.474844 | 1.3:-78588766 | None:intergenic |
CCCAAACAAGTGTCTTGGAC+TGG | 0.487799 | 1.3:-78585930 | None:intergenic |
CACATGATGCAACATCATAA+GGG | 0.489688 | 1.3:-78585314 | None:intergenic |
TGCACGTCAACATGGATTCT+CGG | 0.489863 | 1.3:+78588805 | MS.gene029122:CDS |
CCAAACAAGTGTCTTGGACT+GGG | 0.490229 | 1.3:-78585929 | None:intergenic |
ACTGAAGAAGATGAAGTTCA+AGG | 0.494104 | 1.3:+78584276 | MS.gene029122:CDS |
AGTTCAAGAAGTTGCTGCTA+TGG | 0.501024 | 1.3:+78584197 | MS.gene029122:CDS |
TGACATTACAATGGAGGTAG+TGG | 0.503770 | 1.3:+78584143 | MS.gene029122:CDS |
ACTTACCCAAACAAGTGTCT+TGG | 0.505915 | 1.3:-78585935 | None:intergenic |
AACGTCAACGTGCATTTGGC+AGG | 0.509314 | 1.3:+78585156 | MS.gene029122:CDS |
CCAGTCCAAGACACTTGTTT+GGG | 0.513934 | 1.3:+78585930 | MS.gene029122:CDS |
TTGCTGTATACGTGCCCAAA+TGG | 0.518565 | 1.3:+78585288 | MS.gene029122:CDS |
CATGGATTCTCGGTTCGAAA+AGG | 0.524434 | 1.3:+78588815 | MS.gene029122:CDS |
CTATGATAGTGTTGCATCAG+AGG | 0.534785 | 1.3:+78584173 | MS.gene029122:CDS |
CATGTGATAACGAACCCCTC+TGG | 0.547413 | 1.3:+78585331 | MS.gene029122:CDS |
GGTTGAGTTTGGTATGAATG+AGG | 0.569145 | 1.3:+78585539 | MS.gene029122:CDS |
ATAATTGAAATTGCTGAGAT+GGG | 0.570838 | 1.3:-78585462 | None:intergenic |
AGAAGAAAGTGACGAAGACA+TGG | 0.570974 | 1.3:+78588709 | MS.gene029122:CDS |
TGGTGCCTTGCGAGAAATTG+TGG | 0.574264 | 1.3:+78585518 | MS.gene029122:CDS |
CTCAACCACAATTTCTCGCA+AGG | 0.589371 | 1.3:-78585523 | None:intergenic |
AACAAAATGGAATTGTGAGT+AGG | 0.593662 | 1.3:+78588849 | MS.gene029122:CDS |
AAGAGGTATGCACGTCAACA+TGG | 0.594612 | 1.3:+78588797 | MS.gene029122:CDS |
CAAACAAGTGTCTTGGACTG+GGG | 0.599155 | 1.3:-78585928 | None:intergenic |
GCAAACATCGACAACACCAG+AGG | 0.599982 | 1.3:-78585347 | None:intergenic |
CAAACATCGACAACACCAGA+GGG | 0.606026 | 1.3:-78585346 | None:intergenic |
ATGAATCGTAGAGAAACAAG+TGG | 0.682053 | 1.3:+78585381 | MS.gene029122:CDS |
AAAGAAATAGAGAATCAACA+AGG | 0.743349 | 1.3:+78588936 | MS.gene029122:CDS |
AAACATCGACAACACCAGAG+GGG | 0.783302 | 1.3:-78585345 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATATTAAAACTTACTATTTA+TGG | - | chr1.3:78587445-78587464 | None:intergenic | 10.0% |
!!! | AATTTTTAATTCATTTAGTT+TGG | - | chr1.3:78585615-78585634 | None:intergenic | 10.0% |
!! | GAAAAAAATTAAAGTTGTAT+TGG | + | chr1.3:78584571-78584590 | MS.gene029122:intron | 15.0% |
!! | GAAATTAAATATACAAAGTT+TGG | - | chr1.3:78588337-78588356 | None:intergenic | 15.0% |
!! | TTAATTTCTTCAATGTATTA+TGG | + | chr1.3:78588349-78588368 | MS.gene029122:intron | 15.0% |
!! | TTTCATGCAAAAATAATATT+AGG | - | chr1.3:78585579-78585598 | None:intergenic | 15.0% |
!!! | ATTTCTAAAATATAACTAGT+AGG | - | chr1.3:78588242-78588261 | None:intergenic | 15.0% |
!!! | TACTAGTTATATTTTAGAAA+TGG | + | chr1.3:78588241-78588260 | MS.gene029122:intron | 15.0% |
!!! | TTTTTTAACAAGCTAAAATA+CGG | - | chr1.3:78586104-78586123 | None:intergenic | 15.0% |
!! | AACTTCAATATCAAACAAAT+TGG | + | chr1.3:78585498-78585517 | MS.gene029122:CDS | 20.0% |
!! | AGAAAAAGAATACAAAAAAG+TGG | + | chr1.3:78584350-78584369 | MS.gene029122:CDS | 20.0% |
!! | AGTATTTATTACTAACAGAT+TGG | - | chr1.3:78584857-78584876 | None:intergenic | 20.0% |
!! | ATTCTCTTTAATGCTAAATT+TGG | + | chr1.3:78586075-78586094 | MS.gene029122:intron | 20.0% |
!! | CTCATCTCATATTTATTTAT+AGG | + | chr1.3:78587922-78587941 | MS.gene029122:intron | 20.0% |
!! | TCACATTATGTATTGAAATT+TGG | - | chr1.3:78588127-78588146 | None:intergenic | 20.0% |
!! | TTGAACAAAATATAAGTGAA+AGG | - | chr1.3:78586837-78586856 | None:intergenic | 20.0% |
!!! | AAAAATATTGTTCCTTTTGT+TGG | + | chr1.3:78588734-78588753 | MS.gene029122:CDS | 20.0% |
!!! | AAATGACACTCATTTTAAAA+CGG | + | chr1.3:78584638-78584657 | MS.gene029122:intron | 20.0% |
!!! | AATTTGCTTATAATAATGAC+CGG | + | chr1.3:78587751-78587770 | MS.gene029122:intron | 20.0% |
!!! | TAAAGTTTTACATAAAGAAG+TGG | - | chr1.3:78587191-78587210 | None:intergenic | 20.0% |
!!! | TACGAGTAAAACTTAATTTT+GGG | - | chr1.3:78584759-78584778 | None:intergenic | 20.0% |
!!! | TTATGATTTTGACATTACAA+TGG | + | chr1.3:78584134-78584153 | MS.gene029122:CDS | 20.0% |
! | AAAGAAATAGAGAATCAACA+AGG | + | chr1.3:78588936-78588955 | MS.gene029122:CDS | 25.0% |
! | AAATGTAACTTTCATGTTGA+TGG | + | chr1.3:78585422-78585441 | MS.gene029122:CDS | 25.0% |
! | AAATTGTATGAGAGAAAAGT+TGG | + | chr1.3:78584522-78584541 | MS.gene029122:intron | 25.0% |
! | AACAAACAAGTACAAATAGT+GGG | - | chr1.3:78585966-78585985 | None:intergenic | 25.0% |
! | AATAATTGAAATTGCTGAGA+TGG | - | chr1.3:78585466-78585485 | None:intergenic | 25.0% |
! | ACACACTAATTGATAAAAGA+AGG | - | chr1.3:78585721-78585740 | None:intergenic | 25.0% |
! | AGAGAACATAATTCTAATTG+AGG | - | chr1.3:78585224-78585243 | None:intergenic | 25.0% |
! | ATAATTGAAATTGCTGAGAT+GGG | - | chr1.3:78585465-78585484 | None:intergenic | 25.0% |
! | ATTACTAACAGATTGGAAAT+TGG | - | chr1.3:78584850-78584869 | None:intergenic | 25.0% |
! | CACATTAAATGAAAGAGTTA+AGG | - | chr1.3:78587256-78587275 | None:intergenic | 25.0% |
! | CATTCAATAAATGATGTATG+TGG | + | chr1.3:78587677-78587696 | MS.gene029122:intron | 25.0% |
! | GGTTGCAATTAAATTAAACA+GGG | - | chr1.3:78584917-78584936 | None:intergenic | 25.0% |
! | GTATTTATTGAAGGTAAAGT+TGG | + | chr1.3:78584546-78584565 | MS.gene029122:intron | 25.0% |
! | GTGTTAGAAATTGATGAAAT+CGG | + | chr1.3:78588626-78588645 | MS.gene029122:CDS | 25.0% |
! | GTTAGAAGTTCTATATTGTT+TGG | - | chr1.3:78586871-78586890 | None:intergenic | 25.0% |
! | GTTGCAATTAAATTAAACAG+GGG | - | chr1.3:78584916-78584935 | None:intergenic | 25.0% |
! | TAACAAACAAGTACAAATAG+TGG | - | chr1.3:78585967-78585986 | None:intergenic | 25.0% |
! | TATATTGTTTGGAGAATTGA+AGG | - | chr1.3:78586860-78586879 | None:intergenic | 25.0% |
! | TCACTATAAGTGTTTGTATA+TGG | - | chr1.3:78586136-78586155 | None:intergenic | 25.0% |
! | TGTCAAAATCATAAGAATCT+TGG | - | chr1.3:78584128-78584147 | None:intergenic | 25.0% |
! | TTAGTTTAGATTTAGTGTCT+CGG | + | chr1.3:78587529-78587548 | MS.gene029122:intron | 25.0% |
!! | AAAGTTGGAGTATTTATTGA+AGG | + | chr1.3:78584537-78584556 | MS.gene029122:intron | 25.0% |
!! | AATTTGCTTATAATAGTGAC+CGG | - | chr1.3:78587642-78587661 | None:intergenic | 25.0% |
!! | CATAATTCTAATTGAGGTTT+TGG | - | chr1.3:78585218-78585237 | None:intergenic | 25.0% |
!! | CTACGAGTAAAACTTAATTT+TGG | - | chr1.3:78584760-78584779 | None:intergenic | 25.0% |
!! | CTATTTGTACTTGTTTGTTA+CGG | + | chr1.3:78585967-78585986 | MS.gene029122:intron | 25.0% |
!! | GAAGAAGTTACTTTAGAAAA+TGG | + | chr1.3:78588551-78588570 | MS.gene029122:CDS | 25.0% |
!! | TCATTTTCATACTCATATTC+GGG | - | chr1.3:78584321-78584340 | None:intergenic | 25.0% |
!! | TGTGCAATTAAAATTTCTAG+AGG | + | chr1.3:78588038-78588057 | MS.gene029122:intron | 25.0% |
!! | TTTTAATGTCTACTAGTGAT+TGG | + | chr1.3:78586011-78586030 | MS.gene029122:intron | 25.0% |
!!! | AAGCATTCGTTTTTTATAAG+AGG | + | chr1.3:78588780-78588799 | MS.gene029122:CDS | 25.0% |
!!! | ACATTTTGATCTTAACATTG+TGG | + | chr1.3:78588595-78588614 | MS.gene029122:CDS | 25.0% |
!!! | CTATTTCTTTGTTCTTTTGA+TGG | - | chr1.3:78588926-78588945 | None:intergenic | 25.0% |
!!! | GAAAATTTTAAGAAGCCAAA+AGG | - | chr1.3:78588150-78588169 | None:intergenic | 25.0% |
!!! | GTCATTTTCATACTCATATT+CGG | - | chr1.3:78584322-78584341 | None:intergenic | 25.0% |
!!! | TATATAAAAGTACCTGATTG+TGG | - | chr1.3:78588314-78588333 | None:intergenic | 25.0% |
!!! | TTGATGCTTTTATTTTGTGT+TGG | + | chr1.3:78584410-78584429 | MS.gene029122:intron | 25.0% |
AAAAGTTGTATCAAAGCTGA+AGG | - | chr1.3:78587083-78587102 | None:intergenic | 30.0% | |
AACAAAATGGAATTGTGAGT+AGG | + | chr1.3:78588849-78588868 | MS.gene029122:CDS | 30.0% | |
AACATTGAATGAAAGAGTTG+AGG | - | chr1.3:78586484-78586503 | None:intergenic | 30.0% | |
ACGAGAGACTATTCTATTAT+AGG | - | chr1.3:78584956-78584975 | None:intergenic | 30.0% | |
AGACTAAATCAGGTCATAAA+GGG | - | chr1.3:78586178-78586197 | None:intergenic | 30.0% | |
AGGAAAATTTGACCAACAAA+AGG | - | chr1.3:78588749-78588768 | None:intergenic | 30.0% | |
ATACCATTGTTGGATTGTAT+GGG | + | chr1.3:78586713-78586732 | MS.gene029122:intron | 30.0% | |
ATCGTAGTACTAGTAAATAC+TGG | - | chr1.3:78584881-78584900 | None:intergenic | 30.0% | |
ATCTTGAGTTATCAATGTTG+CGG | + | chr1.3:78584806-78584825 | MS.gene029122:intron | 30.0% | |
ATGAGATGAGATTAGATGAT+TGG | - | chr1.3:78587912-78587931 | None:intergenic | 30.0% | |
CGTTAATACAAATTTACCCT+TGG | + | chr1.3:78588077-78588096 | MS.gene029122:intron | 30.0% | |
CTCTCGTATTACATTCAATT+TGG | + | chr1.3:78584969-78584988 | MS.gene029122:intron | 30.0% | |
CTCTTTAATGCTAAATTTGG+TGG | + | chr1.3:78586078-78586097 | MS.gene029122:intron | 30.0% | |
GAAATTAATGGTGCATACAT+TGG | - | chr1.3:78586390-78586409 | None:intergenic | 30.0% | |
GAATCAACAATCAACACATT+AGG | + | chr1.3:78587135-78587154 | MS.gene029122:intron | 30.0% | |
GGGTTGCAATTAAATTAAAC+AGG | - | chr1.3:78584918-78584937 | None:intergenic | 30.0% | |
GGTAGATTCATCAAACAAAA+TGG | + | chr1.3:78588836-78588855 | MS.gene029122:CDS | 30.0% | |
GTATGCACCATTAATTTCAT+TGG | + | chr1.3:78586392-78586411 | MS.gene029122:intron | 30.0% | |
GTTCCAAAATAAAGTAAGTG+TGG | - | chr1.3:78588004-78588023 | None:intergenic | 30.0% | |
TAACAGATTGGAAATTGGAA+TGG | - | chr1.3:78584845-78584864 | None:intergenic | 30.0% | |
TAATTTGATACGATGGATCT+TGG | - | chr1.3:78586244-78586263 | None:intergenic | 30.0% | |
TACACCTCCAATGAAATTAA+TGG | - | chr1.3:78586402-78586421 | None:intergenic | 30.0% | |
TACTCGTAGTAGTAATTAAG+CGG | + | chr1.3:78584771-78584790 | MS.gene029122:intron | 30.0% | |
TCAACTCTTTCATTCAATGT+TGG | + | chr1.3:78586483-78586502 | MS.gene029122:intron | 30.0% | |
TCGTAGTACTAGTAAATACT+GGG | - | chr1.3:78584880-78584899 | None:intergenic | 30.0% | |
TGAATGAGGTACGATTAATT+TGG | + | chr1.3:78585553-78585572 | MS.gene029122:intron | 30.0% | |
TGAGATGAGATTAGATGATT+GGG | - | chr1.3:78587911-78587930 | None:intergenic | 30.0% | |
! | AACATGTTTCACTTGTCTTT+TGG | + | chr1.3:78585102-78585121 | MS.gene029122:CDS | 30.0% |
! | AATCTAATGACTTGCACTTA+AGG | - | chr1.3:78586923-78586942 | None:intergenic | 30.0% |
! | ATCTAATGACTTGCACTTAA+GGG | - | chr1.3:78586922-78586941 | None:intergenic | 30.0% |
! | CAATACATAATGTGACCTTT+TGG | + | chr1.3:78588132-78588151 | MS.gene029122:intron | 30.0% |
! | CATTTTCATACTCATATTCG+GGG | - | chr1.3:78584320-78584339 | None:intergenic | 30.0% |
! | TAGAACCTCTTTGAAAATCA+TGG | + | chr1.3:78588898-78588917 | MS.gene029122:CDS | 30.0% |
! | TCATTACAATCCCTTTTAAG+CGG | + | chr1.3:78586942-78586961 | MS.gene029122:intron | 30.0% |
! | TCTAAAGTAACTTCTTCTAC+TGG | - | chr1.3:78588548-78588567 | None:intergenic | 30.0% |
! | TCTGTTTGTCTTGTAGTTTT+GGG | + | chr1.3:78585867-78585886 | MS.gene029122:intron | 30.0% |
! | TTCATCTTCTTCAGTTTGTT+TGG | - | chr1.3:78584271-78584290 | None:intergenic | 30.0% |
!! | TGACCACACTTACTTTATTT+TGG | + | chr1.3:78587998-78588017 | MS.gene029122:intron | 30.0% |
!! | TGATTTTGACATTACAATGG+AGG | + | chr1.3:78584137-78584156 | MS.gene029122:CDS | 30.0% |
!!! | TAAGGTTTTGGATTAAGAAG+TGG | - | chr1.3:78586795-78586814 | None:intergenic | 30.0% |
AAATGTCGTCAACCTATCTT+GGG | + | chr1.3:78587847-78587866 | MS.gene029122:intron | 35.0% | |
AATTTAGAAGATACTCCCTC+CGG | - | chr1.3:78587773-78587792 | None:intergenic | 35.0% | |
ACGTATACAGCAAAATTCCT+AGG | - | chr1.3:78585281-78585300 | None:intergenic | 35.0% | |
ACTGAAGAAGATGAAGTTCA+AGG | + | chr1.3:78584276-78584295 | MS.gene029122:CDS | 35.0% | |
AGAAAAATGTCACCCAAGAT+AGG | - | chr1.3:78587862-78587881 | None:intergenic | 35.0% | |
AGGAGAAGATATTAGACTGA+AGG | - | chr1.3:78588222-78588241 | None:intergenic | 35.0% | |
AGTCAAGATGTTGAGATGAA+TGG | + | chr1.3:78588680-78588699 | MS.gene029122:CDS | 35.0% | |
ATCCAAAACCTTAAGACAAC+AGG | + | chr1.3:78586802-78586821 | MS.gene029122:intron | 35.0% | |
ATCCATCGTATCAAATTACG+CGG | + | chr1.3:78586246-78586265 | MS.gene029122:intron | 35.0% | |
ATCTCAACATCTTGACTAGA+AGG | - | chr1.3:78588677-78588696 | None:intergenic | 35.0% | |
ATGAATCGTAGAGAAACAAG+TGG | + | chr1.3:78585381-78585400 | MS.gene029122:CDS | 35.0% | |
CACATGATGCAACATCATAA+GGG | - | chr1.3:78585317-78585336 | None:intergenic | 35.0% | |
CAGACTAAATCAGGTCATAA+AGG | - | chr1.3:78586179-78586198 | None:intergenic | 35.0% | |
CATACAATCCAACAATGGTA+TGG | - | chr1.3:78586714-78586733 | None:intergenic | 35.0% | |
CATACCATTGTTGGATTGTA+TGG | + | chr1.3:78586712-78586731 | MS.gene029122:intron | 35.0% | |
CATGTTTAAGAGAGAGTCTA+TGG | - | chr1.3:78585088-78585107 | None:intergenic | 35.0% | |
CTCATAAACCTGTTGTCTTA+AGG | - | chr1.3:78586813-78586832 | None:intergenic | 35.0% | |
GAGATGAGATTAGATGATTG+GGG | - | chr1.3:78587910-78587929 | None:intergenic | 35.0% | |
GGTCATAAAGGGATTAATCT+AGG | - | chr1.3:78586167-78586186 | None:intergenic | 35.0% | |
GTAAAAGCTTCCGCTTAAAA+GGG | - | chr1.3:78586955-78586974 | None:intergenic | 35.0% | |
GTCAAGATGTTGAGATGAAT+GGG | + | chr1.3:78588681-78588700 | MS.gene029122:CDS | 35.0% | |
TAAATGTCGTCAACCTATCT+TGG | + | chr1.3:78587846-78587865 | MS.gene029122:intron | 35.0% | |
TACAAACTTGCAATCTGAAG+TGG | + | chr1.3:78585761-78585780 | MS.gene029122:intron | 35.0% | |
TACCATTGTTGGATTGTATG+GGG | + | chr1.3:78586714-78586733 | MS.gene029122:intron | 35.0% | |
TCACATGATGCAACATCATA+AGG | - | chr1.3:78585318-78585337 | None:intergenic | 35.0% | |
TGAGTGTGACTCATTAACTA+AGG | - | chr1.3:78587334-78587353 | None:intergenic | 35.0% | |
TGCACCATTAATTTCATTGG+AGG | + | chr1.3:78586395-78586414 | MS.gene029122:intron | 35.0% | |
TGCTTATAATAATGACCGGA+GGG | + | chr1.3:78587755-78587774 | MS.gene029122:intron | 35.0% | |
TGTAAAAGCTTCCGCTTAAA+AGG | - | chr1.3:78586956-78586975 | None:intergenic | 35.0% | |
TGTGTCAAACAGAAGCTTAA+GGG | - | chr1.3:78585025-78585044 | None:intergenic | 35.0% | |
TTATCCTTTATCCCATCAAG+CGG | + | chr1.3:78586292-78586311 | MS.gene029122:intron | 35.0% | |
TTGCTTATAATAATGACCGG+AGG | + | chr1.3:78587754-78587773 | MS.gene029122:intron | 35.0% | |
TTGTGTCAAACAGAAGCTTA+AGG | - | chr1.3:78585026-78585045 | None:intergenic | 35.0% | |
TTTGGGCTACATTGTTTGTT+TGG | + | chr1.3:78585884-78585903 | MS.gene029122:CDS | 35.0% | |
! | AACCTGTTGTCTTAAGGTTT+TGG | - | chr1.3:78586807-78586826 | None:intergenic | 35.0% |
! | CTTCTTCAGTTTGTTTGGAT+TGG | - | chr1.3:78584266-78584285 | None:intergenic | 35.0% |
! | CTTGTTTCTCTACGATTCAT+AGG | - | chr1.3:78585381-78585400 | None:intergenic | 35.0% |
! | GACTTAAAAGCATGGCAATT+TGG | + | chr1.3:78585844-78585863 | MS.gene029122:intron | 35.0% |
! | GGCTTCTTAAAATTTTCCCT+CGG | + | chr1.3:78588153-78588172 | MS.gene029122:intron | 35.0% |
! | GTCTGTTTGTCTTGTAGTTT+TGG | + | chr1.3:78585866-78585885 | MS.gene029122:intron | 35.0% |
! | TGGTCAAATTTTCCTAAGTG+AGG | + | chr1.3:78588754-78588773 | MS.gene029122:CDS | 35.0% |
! | TGGTTCCATGATTTTCAAAG+AGG | - | chr1.3:78588906-78588925 | None:intergenic | 35.0% |
!! | AACTTTTGAGTCACACGTAA+GGG | + | chr1.3:78587096-78587115 | MS.gene029122:intron | 35.0% |
!! | GGACTTATGCTTTGAAGAAA+GGG | + | chr1.3:78584431-78584450 | MS.gene029122:intron | 35.0% |
!! | TGGACTTATGCTTTGAAGAA+AGG | + | chr1.3:78584430-78584449 | MS.gene029122:intron | 35.0% |
!!! | GACACTCATTTTAAAACGGA+GGG | + | chr1.3:78584642-78584661 | MS.gene029122:intron | 35.0% |
!!! | TGACACTCATTTTAAAACGG+AGG | + | chr1.3:78584641-78584660 | MS.gene029122:intron | 35.0% |
AAACTAGATTCTACTCCCTC+CGG | + | chr1.3:78587620-78587639 | MS.gene029122:intron | 40.0% | |
AAGCACTTCACAATGTTACC+AGG | + | chr1.3:78585822-78585841 | MS.gene029122:intron | 40.0% | |
AAGTCGAACCATACCATTGT+TGG | + | chr1.3:78586703-78586722 | MS.gene029122:intron | 40.0% | |
AATGGTATGGTTCGACTTCA+TGG | - | chr1.3:78586701-78586720 | None:intergenic | 40.0% | |
AATGTTATCTTATGCCCCGA+GGG | + | chr1.3:78587947-78587966 | MS.gene029122:intron | 40.0% | |
ACTTACCCAAACAAGTGTCT+TGG | - | chr1.3:78585938-78585957 | None:intergenic | 40.0% | |
AGAAGAAAGTGACGAAGACA+TGG | + | chr1.3:78588709-78588728 | MS.gene029122:CDS | 40.0% | |
AGTTATCAATGTTGCGGCAA+GGG | + | chr1.3:78584812-78584831 | MS.gene029122:intron | 40.0% | |
AGTTCAAGAAGTTGCTGCTA+TGG | + | chr1.3:78584197-78584216 | MS.gene029122:CDS | 40.0% | |
ATAGGCACTCAAGATTCACA+GGG | - | chr1.3:78584938-78584957 | None:intergenic | 40.0% | |
ATCCCCATACAATCCAACAA+TGG | - | chr1.3:78586719-78586738 | None:intergenic | 40.0% | |
ATTATGTGGGGGAGTCAAAT+TGG | + | chr1.3:78586446-78586465 | MS.gene029122:intron | 40.0% | |
CGAGAAATTGTGGTTGAGTT+TGG | + | chr1.3:78585528-78585547 | MS.gene029122:CDS | 40.0% | |
CTCAAACTCAAACCACAATC+AGG | + | chr1.3:78588299-78588318 | MS.gene029122:intron | 40.0% | |
CTCTGATGCAACACTATCAT+AGG | - | chr1.3:78584175-78584194 | None:intergenic | 40.0% | |
CTCTGCAGTTGCACAAATTT+GGG | - | chr1.3:78584722-78584741 | None:intergenic | 40.0% | |
GGTTGAGTTTGGTATGAATG+AGG | + | chr1.3:78585539-78585558 | MS.gene029122:CDS | 40.0% | |
GTTACCAGGACTTAAAAGCA+TGG | + | chr1.3:78585836-78585855 | MS.gene029122:intron | 40.0% | |
TAATGTTATCTTATGCCCCG+AGG | + | chr1.3:78587946-78587965 | MS.gene029122:intron | 40.0% | |
TATAGGCACTCAAGATTCAC+AGG | - | chr1.3:78584939-78584958 | None:intergenic | 40.0% | |
TCAAAGAGGTTCTACCTTCA+CGG | - | chr1.3:78588892-78588911 | None:intergenic | 40.0% | |
TCCTCCTTGTTGGATTATGT+GGG | + | chr1.3:78586433-78586452 | MS.gene029122:intron | 40.0% | |
TCTCTGCAGTTGCACAAATT+TGG | - | chr1.3:78584723-78584742 | None:intergenic | 40.0% | |
TGACATTACAATGGAGGTAG+TGG | + | chr1.3:78584143-78584162 | MS.gene029122:CDS | 40.0% | |
TGACCAGATCAGACTAAATC+AGG | - | chr1.3:78586188-78586207 | None:intergenic | 40.0% | |
TGACCTGATTTAGTCTGATC+TGG | + | chr1.3:78586182-78586201 | MS.gene029122:intron | 40.0% | |
TGCTTATAATAGTGACCGGA+GGG | - | chr1.3:78587638-78587657 | None:intergenic | 40.0% | |
TTGCTTATAATAGTGACCGG+AGG | - | chr1.3:78587639-78587658 | None:intergenic | 40.0% | |
! | CAGAAGCTTAAGGGTCATTT+TGG | - | chr1.3:78585016-78585035 | None:intergenic | 40.0% |
! | CTATGATAGTGTTGCATCAG+AGG | + | chr1.3:78584173-78584192 | MS.gene029122:CDS | 40.0% |
! | GAAGGTATATATGTGCTGGA+AGG | - | chr1.3:78588204-78588223 | None:intergenic | 40.0% |
! | GACTGAAGGTATATATGTGC+TGG | - | chr1.3:78588208-78588227 | None:intergenic | 40.0% |
! | GATTTCTTTTGTCACCGTGA+AGG | + | chr1.3:78588875-78588894 | MS.gene029122:CDS | 40.0% |
! | TGTCTTTTGGCACAGTTGTA+AGG | + | chr1.3:78585115-78585134 | MS.gene029122:CDS | 40.0% |
! | TTGTGGTTTGAGTTTGAGCT+AGG | - | chr1.3:78588297-78588316 | None:intergenic | 40.0% |
!! | AAGCTTAAGGGTCATTTTGG+TGG | - | chr1.3:78585013-78585032 | None:intergenic | 40.0% |
!! | ACATCATAAGGGCATCCATT+TGG | - | chr1.3:78585306-78585325 | None:intergenic | 40.0% |
!! | ACTTTTGAGTCACACGTAAG+GGG | + | chr1.3:78587097-78587116 | MS.gene029122:intron | 40.0% |
!! | AGCATCTGGAGTTCTAAAGT+TGG | - | chr1.3:78585247-78585266 | None:intergenic | 40.0% |
!! | ATTGCCATGCTTTTAAGTCC+TGG | - | chr1.3:78585843-78585862 | None:intergenic | 40.0% |
!! | CAACTTTTGAGTCACACGTA+AGG | + | chr1.3:78587095-78587114 | MS.gene029122:intron | 40.0% |
!! | CATCATAAGGGCATCCATTT+GGG | - | chr1.3:78585305-78585324 | None:intergenic | 40.0% |
AAACATCGACAACACCAGAG+GGG | - | chr1.3:78585348-78585367 | None:intergenic | 45.0% | |
CAAACAAGTGTCTTGGACTG+GGG | - | chr1.3:78585931-78585950 | None:intergenic | 45.0% | |
CAAACATCGACAACACCAGA+GGG | - | chr1.3:78585349-78585368 | None:intergenic | 45.0% | |
CAACAACGTCAACGTGCATT+TGG | + | chr1.3:78585152-78585171 | MS.gene029122:CDS | 45.0% | |
CCAAACAAGTGTCTTGGACT+GGG | - | chr1.3:78585932-78585951 | None:intergenic | 45.0% | |
CCAGTCCAAGACACTTGTTT+GGG | + | chr1.3:78585930-78585949 | MS.gene029122:CDS | 45.0% | |
CCTCCTTGTTGGATTATGTG+GGG | + | chr1.3:78586434-78586453 | MS.gene029122:intron | 45.0% | |
CGAATGCTTCTTCCTCACTT+AGG | - | chr1.3:78588769-78588788 | None:intergenic | 45.0% | |
CTCAACCACAATTTCTCGCA+AGG | - | chr1.3:78585526-78585545 | None:intergenic | 45.0% | |
CTCCTCCTTGTTGGATTATG+TGG | + | chr1.3:78586432-78586451 | MS.gene029122:intron | 45.0% | |
CTCCTTGTTGGATTATGTGG+GGG | + | chr1.3:78586435-78586454 | MS.gene029122:intron | 45.0% | |
GAAGACCTTCATGACAACAG+TGG | - | chr1.3:78587040-78587059 | None:intergenic | 45.0% | |
GACCGCGTAATTTGATACGA+TGG | - | chr1.3:78586251-78586270 | None:intergenic | 45.0% | |
GAGCAACCACACAAATGAGT+TGG | + | chr1.3:78587162-78587181 | MS.gene029122:intron | 45.0% | |
GAGTTATCAATGTTGCGGCA+AGG | + | chr1.3:78584811-78584830 | MS.gene029122:intron | 45.0% | |
GTATGGTTCGACTTCATGGA+GGG | - | chr1.3:78586697-78586716 | None:intergenic | 45.0% | |
GTTGGATTGTATGGGGATCT+TGG | + | chr1.3:78586721-78586740 | MS.gene029122:intron | 45.0% | |
TAAAAGAGCCTCCGCTTGAT+GGG | - | chr1.3:78586306-78586325 | None:intergenic | 45.0% | |
TATATGTGCTGGAAGGCAAG+TGG | - | chr1.3:78588197-78588216 | None:intergenic | 45.0% | |
TATGGTTCGACTTCATGGAG+GGG | - | chr1.3:78586696-78586715 | None:intergenic | 45.0% | |
TCATGAAGGTCTTCCACATG+AGG | + | chr1.3:78587046-78587065 | MS.gene029122:intron | 45.0% | |
TGCACGTCAACATGGATTCT+CGG | + | chr1.3:78588805-78588824 | MS.gene029122:CDS | 45.0% | |
TGGTGTCCAACTCATTTGTG+TGG | - | chr1.3:78587171-78587190 | None:intergenic | 45.0% | |
TGGTGTCTTACTCACTTGTG+TGG | - | chr1.3:78586775-78586794 | None:intergenic | 45.0% | |
TTAAAAGAGCCTCCGCTTGA+TGG | - | chr1.3:78586307-78586326 | None:intergenic | 45.0% | |
TTGCTGTATACGTGCCCAAA+TGG | + | chr1.3:78585288-78585307 | MS.gene029122:CDS | 45.0% | |
! | AAGAGGTATGCACGTCAACA+TGG | + | chr1.3:78588797-78588816 | MS.gene029122:CDS | 45.0% |
! | CATGGATTCTCGGTTCGAAA+AGG | + | chr1.3:78588815-78588834 | MS.gene029122:CDS | 45.0% |
! | CTTGGCGGATCATCTACATT+GGG | + | chr1.3:78586739-78586758 | MS.gene029122:intron | 45.0% |
! | CTTTGTTGTCTCCTCCTTGT+TGG | + | chr1.3:78586423-78586442 | MS.gene029122:intron | 45.0% |
! | TCTTGGCGGATCATCTACAT+TGG | + | chr1.3:78586738-78586757 | MS.gene029122:intron | 45.0% |
! | TGTTGCTTATCATGTGCCCT+CGG | - | chr1.3:78587966-78587985 | None:intergenic | 45.0% |
!!! | AAGTTTTTAATTATTTTATT+AGG | + | chr1.3:78585676-78585695 | MS.gene029122:intron | 5.0% |
AACGTCAACGTGCATTTGGC+AGG | + | chr1.3:78585156-78585175 | MS.gene029122:CDS | 50.0% | |
AGGTCTTCCACATGAGGAGT+TGG | + | chr1.3:78587052-78587071 | MS.gene029122:intron | 50.0% | |
AGGTTGCGATCATCAGCATC+TGG | - | chr1.3:78585261-78585280 | None:intergenic | 50.0% | |
CCCAAACAAGTGTCTTGGAC+TGG | - | chr1.3:78585933-78585952 | None:intergenic | 50.0% | |
CCCAGTCCAAGACACTTGTT+TGG | + | chr1.3:78585929-78585948 | MS.gene029122:CDS | 50.0% | |
CCCCACATAATCCAACAAGG+AGG | - | chr1.3:78586437-78586456 | None:intergenic | 50.0% | |
CTCCCCCACATAATCCAACA+AGG | - | chr1.3:78586440-78586459 | None:intergenic | 50.0% | |
CTCGTTGGTGCATGTGACAA+TGG | - | chr1.3:78587004-78587023 | None:intergenic | 50.0% | |
GATGCTGATGATCGCAACCT+AGG | + | chr1.3:78585261-78585280 | MS.gene029122:intron | 50.0% | |
GCAAACATCGACAACACCAG+AGG | - | chr1.3:78585350-78585369 | None:intergenic | 50.0% | |
GCGGAAGAGATTCTAGGTGT+TGG | - | chr1.3:78586674-78586693 | None:intergenic | 50.0% | |
GGATTGTATGGGGATCTTGG+CGG | + | chr1.3:78586724-78586743 | MS.gene029122:intron | 50.0% | |
GGTATGGTTCGACTTCATGG+AGG | - | chr1.3:78586698-78586717 | None:intergenic | 50.0% | |
GGTTTGACCAACTCCTCATG+TGG | - | chr1.3:78587062-78587081 | None:intergenic | 50.0% | |
GTGCATTTGGCAGGTAGCTT+AGG | + | chr1.3:78585165-78585184 | MS.gene029122:intron | 50.0% | |
GTTGCTTATCATGTGCCCTC+GGG | - | chr1.3:78587965-78587984 | None:intergenic | 50.0% | |
TCCTTTATCCCATCAAGCGG+AGG | + | chr1.3:78586295-78586314 | MS.gene029122:intron | 50.0% | |
TCTGGCCACTGTTGTCATGA+AGG | + | chr1.3:78587032-78587051 | MS.gene029122:intron | 50.0% | |
TGGTGCCTTGCGAGAAATTG+TGG | + | chr1.3:78585518-78585537 | MS.gene029122:CDS | 50.0% | |
TTGCTTATCATGTGCCCTCG+GGG | - | chr1.3:78587964-78587983 | None:intergenic | 50.0% | |
TTGGAGGGAAAATCTGCCGA+GGG | - | chr1.3:78588172-78588191 | None:intergenic | 50.0% | |
! | CATGTGATAACGAACCCCTC+TGG | + | chr1.3:78585331-78585350 | MS.gene029122:CDS | 50.0% |
CACCAACGAGACACGTTGTC+TGG | + | chr1.3:78587014-78587033 | MS.gene029122:intron | 55.0% | |
CTTGGAGGGAAAATCTGCCG+AGG | - | chr1.3:78588173-78588192 | None:intergenic | 55.0% | |
GCCTCCGCTTGATGGGATAA+AGG | - | chr1.3:78586299-78586318 | None:intergenic | 55.0% | |
! | GGAAGGCAAGTGGACTTGGA+GGG | - | chr1.3:78588187-78588206 | None:intergenic | 55.0% |
! | TGCTGGAAGGCAAGTGGACT+TGG | - | chr1.3:78588191-78588210 | None:intergenic | 55.0% |
! | TGGAAGGCAAGTGGACTTGG+AGG | - | chr1.3:78588188-78588207 | None:intergenic | 55.0% |
GGAGGGGCGGAAGAGATTCT+AGG | - | chr1.3:78586680-78586699 | None:intergenic | 60.0% | |
GGCCAGACAACGTGTCTCGT+TGG | - | chr1.3:78587019-78587038 | None:intergenic | 60.0% | |
GGTTCGACTTCATGGAGGGG+CGG | - | chr1.3:78586693-78586712 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.3 | gene | 78584114 | 78588982 | 78584114 | ID=MS.gene029122 |
chr1.3 | mRNA | 78584114 | 78588982 | 78584114 | ID=MS.gene029122.t1;Parent=MS.gene029122 |
chr1.3 | exon | 78584114 | 78584371 | 78584114 | ID=MS.gene029122.t1.exon1;Parent=MS.gene029122.t1 |
chr1.3 | CDS | 78584114 | 78584371 | 78584114 | ID=cds.MS.gene029122.t1;Parent=MS.gene029122.t1 |
chr1.3 | exon | 78585048 | 78585177 | 78585048 | ID=MS.gene029122.t1.exon2;Parent=MS.gene029122.t1 |
chr1.3 | CDS | 78585048 | 78585177 | 78585048 | ID=cds.MS.gene029122.t1;Parent=MS.gene029122.t1 |
chr1.3 | exon | 78585283 | 78585560 | 78585283 | ID=MS.gene029122.t1.exon3;Parent=MS.gene029122.t1 |
chr1.3 | CDS | 78585283 | 78585560 | 78585283 | ID=cds.MS.gene029122.t1;Parent=MS.gene029122.t1 |
chr1.3 | exon | 78585883 | 78585951 | 78585883 | ID=MS.gene029122.t1.exon4;Parent=MS.gene029122.t1 |
chr1.3 | CDS | 78585883 | 78585951 | 78585883 | ID=cds.MS.gene029122.t1;Parent=MS.gene029122.t1 |
chr1.3 | exon | 78588464 | 78588982 | 78588464 | ID=MS.gene029122.t1.exon5;Parent=MS.gene029122.t1 |
chr1.3 | CDS | 78588464 | 78588982 | 78588464 | ID=cds.MS.gene029122.t1;Parent=MS.gene029122.t1 |
Gene Sequence |
Protein sequence |