AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene029140

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene029140.t1 MTR_1g115315 97.727 264 6 0 1 264 1 264 0.0 542
MS.gene029140.t1 MTR_1g115315 96.281 242 9 0 1 242 1 242 4.78e-177 488
MS.gene029140.t1 MTR_3g115620 69.375 160 44 4 14 168 8 167 2.89e-73 223
MS.gene029140.t1 MTR_7g023810 60.753 186 51 5 5 189 1 165 1.04e-66 205
MS.gene029140.t1 MTR_4g084550 36.607 112 51 2 69 169 37 139 9.52e-18 79.0
MS.gene029140.t1 MTR_2g015000 44.615 65 36 0 83 147 53 117 2.16e-15 75.9
MS.gene029140.t1 MTR_7g025010 42.857 77 40 1 72 144 30 106 2.77e-14 72.8
MS.gene029140.t1 MTR_4g088080 41.667 72 38 1 71 142 30 97 4.70e-13 68.2
MS.gene029140.t1 MTR_8g107210 39.506 81 48 1 85 165 96 175 5.99e-13 68.2
MS.gene029140.t1 MTR_7g060630 46.774 62 33 0 85 146 8 69 1.22e-12 65.5
MS.gene029140.t1 MTR_4g088070 42.857 63 36 0 82 144 26 88 2.86e-12 66.2
MS.gene029140.t1 MTR_4g063735 46.667 60 32 0 85 144 25 84 9.94e-12 63.9
MS.gene029140.t1 MTR_5g081990 43.333 60 34 0 85 144 33 92 1.43e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene029140.t1 AT4G35550 53.383 266 73 6 20 264 33 268 1.81e-85 256
MS.gene029140.t1 AT1G20700 52.761 163 69 5 10 168 19 177 8.27e-53 171
MS.gene029140.t1 AT1G20700 52.761 163 69 5 10 168 19 177 1.03e-52 171
MS.gene029140.t1 AT1G20710 52.857 140 61 4 23 158 13 151 3.49e-34 122
MS.gene029140.t1 AT1G20700 63.415 82 30 0 75 156 23 104 5.14e-34 120
MS.gene029140.t1 AT2G33880 44.615 65 36 0 82 146 52 116 3.42e-15 75.1
MS.gene029140.t1 AT5G45980 44.615 65 36 0 82 146 52 116 3.54e-15 74.3
MS.gene029140.t1 AT2G33880 45.312 64 35 0 83 146 53 116 3.67e-15 74.7
MS.gene029140.t1 AT3G18010 46.667 60 32 0 85 144 76 135 2.83e-13 69.3
MS.gene029140.t1 AT3G11260 48.333 60 31 0 85 144 24 83 1.30e-12 65.1
MS.gene029140.t1 AT5G05770 37.662 77 48 0 85 161 29 105 1.61e-12 63.5
MS.gene029140.t1 AT2G28610 43.548 62 35 0 85 146 8 69 4.82e-12 64.7
MS.gene029140.t1 AT2G01500 45.455 55 30 0 85 139 61 115 4.77e-11 62.0

Find 50 sgRNAs with CRISPR-Local

Find 179 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAACATTTGTTTCAGAAATT+TGG 0.112745 1.2:-85176852 None:intergenic
TTGATCTAGCACGCCTATTT+TGG 0.146776 1.2:-85176885 None:intergenic
TTTATAATTGGTTCCAAAAT+AGG 0.153266 1.2:+85176872 MS.gene029140:CDS
CTGAAACAAATGTTTATAAT+TGG 0.206106 1.2:+85176860 MS.gene029140:CDS
AGACATGCCACTCAAATTTC+TGG 0.262992 1.2:-85177142 None:intergenic
CCTTTCATCAGGGGTTAGGC+TGG 0.295215 1.2:+85176657 MS.gene029140:intron
CGAATATACGCTCAAGAATC+TGG 0.304326 1.2:-85176762 None:intergenic
AATTGTAGTCCTCTGCTTGC+TGG 0.362368 1.2:-85177757 None:intergenic
CGTATATTCGATCAGGGAAA+TGG 0.392284 1.2:+85176775 MS.gene029140:CDS
GCAAGCAGAGGACTACAATT+TGG 0.393799 1.2:+85177760 MS.gene029140:CDS
TTTCATCAGGGGTTAGGCTG+GGG 0.399266 1.2:+85176659 MS.gene029140:intron
TCTTGAGCGTATATTCGATC+AGG 0.413169 1.2:+85176768 MS.gene029140:CDS
CTTTCATCAGGGGTTAGGCT+GGG 0.414371 1.2:+85176658 MS.gene029140:intron
TCAAGAATCTGGAGCTGAAC+CGG 0.421307 1.2:-85176751 None:intergenic
TTTCAGAAATTTGGCCATGC+TGG 0.437267 1.2:-85176843 None:intergenic
TGTAGGAGTCCACCTCTGTC+TGG 0.437314 1.2:-85176728 None:intergenic
GGTGATGACTGATGAACAAT+TGG 0.449180 1.2:+85175176 MS.gene029140:CDS
TCTCAACAAAATGCTGCTCT+AGG 0.464326 1.2:+85177006 MS.gene029140:CDS
TCTGCTCAACAAGATCTTGC+TGG 0.471131 1.2:+85175270 MS.gene029140:CDS
TGTTGAGAATGAAATTCCTC+TGG 0.474708 1.2:-85176991 None:intergenic
CTCAACAAGCTGTTCACAAA+TGG 0.485586 1.2:-85175232 None:intergenic
TCAGGGAATGACTATCTAGC+TGG 0.485659 1.2:+85177701 MS.gene029140:intron
ACAGAGGTGGACTCCTACAC+CGG 0.495315 1.2:+85176732 MS.gene029140:CDS
CTCAACAAAATGCTGCTCTA+GGG 0.501777 1.2:+85177007 MS.gene029140:CDS
TGTCGAAGCGATGTATGTTA+AGG 0.503782 1.2:+85175155 MS.gene029140:CDS
AGAAACAACAAGTACAGAAT+GGG 0.518129 1.2:+85175130 MS.gene029140:CDS
AGAGAAAATGGTGAACATGA+TGG 0.521726 1.2:+85175101 None:intergenic
GCAGAGGACTACAATTTGGC+AGG 0.523975 1.2:+85177764 MS.gene029140:CDS
TGCGACTCATTGATGACAGC+TGG 0.529717 1.2:+85176691 MS.gene029140:CDS
CAGAAACAACAAGTACAGAA+TGG 0.532343 1.2:+85175129 MS.gene029140:CDS
AACATATTCCGTGTTTCCAT+CGG 0.539020 1.2:+85177101 MS.gene029140:CDS
ACCGCCATCCGATGGAAACA+CGG 0.553887 1.2:-85177109 None:intergenic
AGAGACTGAGGTTGATTCCA+AGG 0.556104 1.2:+85176954 MS.gene029140:CDS
GATCTTATACCGCCATCCGA+TGG 0.574800 1.2:-85177117 None:intergenic
CTTGAGCGTATATTCGATCA+GGG 0.579984 1.2:+85176769 MS.gene029140:CDS
ATCTGGAGCTGAACCGGTGT+AGG 0.590506 1.2:-85176745 None:intergenic
TCCGTGTTTCCATCGGATGG+CGG 0.595864 1.2:+85177108 MS.gene029140:CDS
TATTCCGTGTTTCCATCGGA+TGG 0.597599 1.2:+85177105 MS.gene029140:CDS
GCTACTGAACTCAGCCAGCA+TGG 0.597739 1.2:+85176829 MS.gene029140:CDS
TCAACAAAATGCTGCTCTAG+GGG 0.599937 1.2:+85177008 MS.gene029140:CDS
AACTAGTAACACTGAATCAG+AGG 0.600354 1.2:+85176930 MS.gene029140:CDS
CATGCCACTCAAATTTCTGG+TGG 0.605707 1.2:-85177139 None:intergenic
AAATGGTGAACATGATGGAA+TGG 0.621193 1.2:+85175106 None:intergenic
AAATCACATCCAGACAGAGG+TGG 0.644627 1.2:+85176719 MS.gene029140:CDS
ATGAACAATTGGAAACTCTG+AGG 0.682721 1.2:+85175187 MS.gene029140:CDS
TGAATCAGAGGTAGAGACTG+AGG 0.683491 1.2:+85176942 MS.gene029140:CDS
AGATCCACCAGAAATTTGAG+TGG 0.687166 1.2:+85177135 MS.gene029140:CDS
GGATAAGAAGACAAAACCAG+AGG 0.688078 1.2:+85176975 MS.gene029140:CDS
CAATATATACCAGCAAGCAG+AGG 0.697674 1.2:+85177748 MS.gene029140:CDS
ACAAAATCACATCCAGACAG+AGG 0.711170 1.2:+85176716 MS.gene029140:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATAATATAAAAATTAAA+GGG - chr1.2:85175340-85175359 None:intergenic 0.0%
!!! TTTTTAAAAAAAAAAAAATT+GGG - chr1.2:85176349-85176368 None:intergenic 0.0%
!! ATTACTAAAATTAAAATTGA+AGG - chr1.2:85175460-85175479 None:intergenic 10.0%
!! GCATATATATATATATATAT+AGG - chr1.2:85175399-85175418 None:intergenic 10.0%
!! TTACTAAAATTAAAATTGAA+GGG - chr1.2:85175459-85175478 None:intergenic 10.0%
!! TTTAAAAAAAAAAAAATTGG+GGG - chr1.2:85176347-85176366 None:intergenic 10.0%
!!! TTTTTATATTATTTTGCTTT+TGG + chr1.2:85175345-85175364 MS.gene029140:intron 10.0%
!!! ATTGAATAAACATACATTTT+TGG + chr1.2:85176409-85176428 MS.gene029140:intron 15.0%
!!! GATTAAATAACAAACATTTT+TGG + chr1.2:85176458-85176477 MS.gene029140:intron 15.0%
!! AAAAAGAAAAATGCAAAATG+GGG + chr1.2:85176906-85176925 MS.gene029140:CDS 20.0%
!! AAAATATCAGGAAAAGAATA+TGG - chr1.2:85177681-85177700 None:intergenic 20.0%
!! AAACATTTGTTTCAGAAATT+TGG - chr1.2:85176855-85176874 None:intergenic 20.0%
!! AACAGATATGAATGAATAAA+TGG - chr1.2:85175824-85175843 None:intergenic 20.0%
!! ACAAAGAACTACTAAATATT+TGG - chr1.2:85175775-85175794 None:intergenic 20.0%
!! ACAGATATGAATGAATAAAT+GGG - chr1.2:85175823-85175842 None:intergenic 20.0%
!! ACTAATTTGAAGATTTGATT+AGG + chr1.2:85177403-85177422 MS.gene029140:intron 20.0%
!! ATGAATAAATGGGAATTTAT+AGG - chr1.2:85175813-85175832 None:intergenic 20.0%
!! CAAAAAGAAAAATGCAAAAT+GGG + chr1.2:85176905-85176924 MS.gene029140:CDS 20.0%
!! CTGAAACAAATGTTTATAAT+TGG + chr1.2:85176860-85176879 MS.gene029140:CDS 20.0%
!! TAAGATCATACGAAAAATAT+AGG - chr1.2:85177241-85177260 None:intergenic 20.0%
!! TCAAAAAGAAAAATGCAAAA+TGG + chr1.2:85176904-85176923 MS.gene029140:CDS 20.0%
!! TCTTGATATTATATGACAAA+TGG + chr1.2:85177364-85177383 MS.gene029140:intron 20.0%
!!! AAGGTACATAACTTTTTTTA+GGG + chr1.2:85175553-85175572 MS.gene029140:intron 20.0%
!!! ACTGTATTTTAGTGTATATT+TGG - chr1.2:85175729-85175748 None:intergenic 20.0%
!!! ATGCTAGTAAAACATTTTTT+TGG - chr1.2:85177593-85177612 None:intergenic 20.0%
!!! TAAGGTACATAACTTTTTTT+AGG + chr1.2:85175552-85175571 MS.gene029140:intron 20.0%
!!! TACATTTTTAGTTGCAAATA+AGG + chr1.2:85175534-85175553 MS.gene029140:intron 20.0%
!!! TACTAAATATTTGGAATCTT+TGG - chr1.2:85175766-85175785 None:intergenic 20.0%
!!! TGTGTTTAACATTTTAGTAA+AGG + chr1.2:85177538-85177557 MS.gene029140:intron 20.0%
!!! TTTATAATTGGTTCCAAAAT+AGG + chr1.2:85176872-85176891 MS.gene029140:CDS 20.0%
!!! TTTTTGTTTTTGCATTTAAG+AGG + chr1.2:85176373-85176392 MS.gene029140:intron 20.0%
! AAAAGAAAAATGCAAAATGG+GGG + chr1.2:85176907-85176926 MS.gene029140:CDS 25.0%
! ACAGAAAACAAAACCATTTA+GGG + chr1.2:85175904-85175923 MS.gene029140:intron 25.0%
! ATCTTCAAATTAGTATTCCA+AGG - chr1.2:85177397-85177416 None:intergenic 25.0%
! ATTAAAGGGAATTTATGATC+AGG - chr1.2:85175326-85175345 None:intergenic 25.0%
! GAAAGAATCTAGTTGAAATT+CGG + chr1.2:85177283-85177302 MS.gene029140:intron 25.0%
! GTGTAAAGTTAAATGTTAAG+TGG + chr1.2:85175880-85175899 MS.gene029140:intron 25.0%
! GTTAACTTAGTTTAAACTTG+AGG + chr1.2:85176248-85176267 MS.gene029140:intron 25.0%
! TAAACTAAGTTAACATCTTG+TGG - chr1.2:85176242-85176261 None:intergenic 25.0%
! TACAAGATAAAAAATCAACC+AGG - chr1.2:85176120-85176139 None:intergenic 25.0%
! TATTAATTACAGTGACAATG+TGG - chr1.2:85176311-85176330 None:intergenic 25.0%
! TGGTATCATAGTAAATTTAC+CGG + chr1.2:85175623-85175642 MS.gene029140:intron 25.0%
! TTAAAGGGAATTTATGATCA+GGG - chr1.2:85175325-85175344 None:intergenic 25.0%
! TTACATAGAAAAATCAAACC+TGG + chr1.2:85176099-85176118 MS.gene029140:intron 25.0%
! TTAGTGTATATTTGGTATCA+CGG - chr1.2:85175721-85175740 None:intergenic 25.0%
! TTTCAACTAGATTCTTTCTA+AGG - chr1.2:85177281-85177300 None:intergenic 25.0%
!! AATTTGTATCTTTTGGCAAT+TGG + chr1.2:85176566-85176585 MS.gene029140:intron 25.0%
!! ACAAATTTAGGGGTTTATTT+TGG + chr1.2:85177338-85177357 MS.gene029140:intron 25.0%
!! TCTTTTCCTGATATTTTTCA+GGG + chr1.2:85177684-85177703 MS.gene029140:intron 25.0%
!! TTCTTTTCCTGATATTTTTC+AGG + chr1.2:85177683-85177702 MS.gene029140:intron 25.0%
!!! AGGTTTGATTTTTCTATGTA+AGG - chr1.2:85176100-85176119 None:intergenic 25.0%
!!! ATTGTCATTTTCTACAAATC+AGG - chr1.2:85176042-85176061 None:intergenic 25.0%
!!! CATTTTTGGATAAACGATTA+TGG + chr1.2:85176423-85176442 MS.gene029140:intron 25.0%
!!! GGTTTGATTTTTCTATGTAA+GGG - chr1.2:85176099-85176118 None:intergenic 25.0%
!!! GTTATTTTTTCCTTTCATCA+GGG + chr1.2:85176647-85176666 MS.gene029140:intron 25.0%
!!! TGTTATTTTTTCCTTTCATC+AGG + chr1.2:85176646-85176665 MS.gene029140:intron 25.0%
!!! TTATTTTTTCCTTTCATCAG+GGG + chr1.2:85176648-85176667 MS.gene029140:intron 25.0%
!!! TTGGATTGCTTTTCAAAATT+GGG + chr1.2:85175364-85175383 MS.gene029140:intron 25.0%
!!! TTTGGATTGCTTTTCAAAAT+TGG + chr1.2:85175363-85175382 MS.gene029140:intron 25.0%
AAAAAAAAAATTGGGGGACA+AGG - chr1.2:85176341-85176360 None:intergenic 30.0%
AAAACAAAACCATTTAGGGA+AGG + chr1.2:85175908-85175927 MS.gene029140:intron 30.0%
AAACAAAACCATTTAGGGAA+GGG + chr1.2:85175909-85175928 MS.gene029140:intron 30.0%
AGAAACAACAAGTACAGAAT+GGG + chr1.2:85175130-85175149 MS.gene029140:CDS 30.0%
CACAGAAAACAAAACCATTT+AGG + chr1.2:85175903-85175922 MS.gene029140:intron 30.0%
TCCAAGCAAAGAAAAAATCA+AGG + chr1.2:85176801-85176820 MS.gene029140:CDS 30.0%
TGATTATCACTAGAACATGA+TGG - chr1.2:85175994-85176013 None:intergenic 30.0%
TTGTTGTAGATGTGTATGTT+TGG + chr1.2:85175603-85175622 MS.gene029140:intron 30.0%
! ACCAAGAAGTGTACAAATTT+AGG + chr1.2:85177326-85177345 MS.gene029140:intron 30.0%
! CAAGAAGTGTACAAATTTAG+GGG + chr1.2:85177328-85177347 MS.gene029140:intron 30.0%
! CCAAGAAGTGTACAAATTTA+GGG + chr1.2:85177327-85177346 MS.gene029140:intron 30.0%
!!! AATTCCTGCCTTTTTTTTTG+TGG - chr1.2:85176550-85176569 None:intergenic 30.0%
!!! ATTCCTGCCTTTTTTTTTGT+GGG - chr1.2:85176549-85176568 None:intergenic 30.0%
!!! TCCTTGATTTTTTCTTTGCT+TGG - chr1.2:85176805-85176824 None:intergenic 30.0%
AACATATTCCGTGTTTCCAT+CGG + chr1.2:85177101-85177120 MS.gene029140:CDS 35.0%
AACTAGTAACACTGAATCAG+AGG + chr1.2:85176930-85176949 MS.gene029140:CDS 35.0%
ACAAAACCACCTTCATCTTT+GGG + chr1.2:85175419-85175438 MS.gene029140:intron 35.0%
AGCATAACCATAAGTACATG+AGG + chr1.2:85176165-85176184 MS.gene029140:intron 35.0%
ATATCTGTTCTTGTGTCAGT+TGG + chr1.2:85175835-85175854 MS.gene029140:intron 35.0%
ATGAACAATTGGAAACTCTG+AGG + chr1.2:85175187-85175206 MS.gene029140:CDS 35.0%
CAGAAACAACAAGTACAGAA+TGG + chr1.2:85175129-85175148 MS.gene029140:CDS 35.0%
CCCTAAATTTGTACACTTCT+TGG - chr1.2:85177330-85177349 None:intergenic 35.0%
GTCATTCCCTGAAAAATATC+AGG - chr1.2:85177693-85177712 None:intergenic 35.0%
TGACAAATGGACATTAACCT+TGG + chr1.2:85177377-85177396 MS.gene029140:intron 35.0%
TGACTATCTAGCTGGAAAAA+TGG + chr1.2:85177709-85177728 MS.gene029140:CDS 35.0%
TGTTGAGAATGAAATTCCTC+TGG - chr1.2:85176994-85177013 None:intergenic 35.0%
TTAAACTTGAGGTTCCTCAA+GGG + chr1.2:85176259-85176278 MS.gene029140:intron 35.0%
TTTAAACTTGAGGTTCCTCA+AGG + chr1.2:85176258-85176277 MS.gene029140:intron 35.0%
! AAAGCATTCCCTATTACCTA+AGG + chr1.2:85176013-85176032 MS.gene029140:intron 35.0%
! ACTTGACAAGTTGAAAGCTT+TGG - chr1.2:85176203-85176222 None:intergenic 35.0%
! AGCATTTCTTTAGAGAATGC+TGG - chr1.2:85176623-85176642 None:intergenic 35.0%
! AGGCAGGAATTTGTATCTTT+TGG + chr1.2:85176559-85176578 MS.gene029140:intron 35.0%
! TTTGAGTCATCGTGATTTTG+AGG - chr1.2:85175684-85175703 None:intergenic 35.0%
!! CTGGAAAAATGGAAGTATCT+GGG + chr1.2:85177720-85177739 MS.gene029140:CDS 35.0%
!! GCAATTCAGAGCATTTTTCT+TGG - chr1.2:85177056-85177075 None:intergenic 35.0%
!! TCAAGAGTACTTCTGATTCT+AGG - chr1.2:85176488-85176507 None:intergenic 35.0%
!!! TGGTTTTGTCTTCTTATCCT+TGG - chr1.2:85176974-85176993 None:intergenic 35.0%
!!! TTCCTGCCTTTTTTTTTGTG+GGG - chr1.2:85176548-85176567 None:intergenic 35.0%
AAATTGGTACAAACACCAGC+AGG + chr1.2:85175933-85175952 MS.gene029140:intron 40.0%
AAGTCAAAGCCCAAAGATGA+AGG - chr1.2:85175431-85175450 None:intergenic 40.0%
ACAAAATCACATCCAGACAG+AGG + chr1.2:85176716-85176735 MS.gene029140:CDS 40.0%
AGACATGCCACTCAAATTTC+TGG - chr1.2:85177145-85177164 None:intergenic 40.0%
AGATCCACCAGAAATTTGAG+TGG + chr1.2:85177135-85177154 MS.gene029140:CDS 40.0%
ATCAGGATGCCTTAGGTAAT+AGG - chr1.2:85176025-85176044 None:intergenic 40.0%
CAATATATACCAGCAAGCAG+AGG + chr1.2:85177748-85177767 MS.gene029140:CDS 40.0%
CACAAAACCACCTTCATCTT+TGG + chr1.2:85175418-85175437 MS.gene029140:intron 40.0%
CACACATTCATTCCCTCTTT+AGG - chr1.2:85175966-85175985 None:intergenic 40.0%
CCAATTTACCCTTCCCTAAA+TGG - chr1.2:85175920-85175939 None:intergenic 40.0%
CCATTTAGGGAAGGGTAAAT+TGG + chr1.2:85175917-85175936 MS.gene029140:intron 40.0%
CGAATATACGCTCAAGAATC+TGG - chr1.2:85176765-85176784 None:intergenic 40.0%
CGTATATTCGATCAGGGAAA+TGG + chr1.2:85176775-85176794 MS.gene029140:CDS 40.0%
CTAAAGAGGGAATGAATGTG+TGG + chr1.2:85175964-85175983 MS.gene029140:intron 40.0%
CTCAACAAAATGCTGCTCTA+GGG + chr1.2:85177007-85177026 MS.gene029140:CDS 40.0%
CTCAACAAGCTGTTCACAAA+TGG - chr1.2:85175235-85175254 None:intergenic 40.0%
CTTACCCCCCACAAAAAAAA+AGG + chr1.2:85176539-85176558 MS.gene029140:intron 40.0%
CTTGAGCGTATATTCGATCA+GGG + chr1.2:85176769-85176788 MS.gene029140:CDS 40.0%
GCATCTCTACAAAATCACCA+CGG - chr1.2:85175654-85175673 None:intergenic 40.0%
GCTAACACCTCATGTACTTA+TGG - chr1.2:85176175-85176194 None:intergenic 40.0%
GGATAAGAAGACAAAACCAG+AGG + chr1.2:85176975-85176994 MS.gene029140:CDS 40.0%
GGTGATGACTGATGAACAAT+TGG + chr1.2:85175176-85175195 MS.gene029140:CDS 40.0%
TAAATTTACCGGTATCACCG+TGG + chr1.2:85175634-85175653 MS.gene029140:intron 40.0%
TCAACAAAATGCTGCTCTAG+GGG + chr1.2:85177008-85177027 MS.gene029140:CDS 40.0%
TCAGGATGCCTTAGGTAATA+GGG - chr1.2:85176024-85176043 None:intergenic 40.0%
TCTACAAATCAGGATGCCTT+AGG - chr1.2:85176032-85176051 None:intergenic 40.0%
TCTCAACAAAATGCTGCTCT+AGG + chr1.2:85177006-85177025 MS.gene029140:CDS 40.0%
TCTTGAGCGTATATTCGATC+AGG + chr1.2:85176768-85176787 MS.gene029140:CDS 40.0%
TGACAATGTGGTCATTTCGA+GGG - chr1.2:85176299-85176318 None:intergenic 40.0%
TGGGGGGTAAGAGAAATATA+AGG - chr1.2:85176530-85176549 None:intergenic 40.0%
TGTCGAAGCGATGTATGTTA+AGG + chr1.2:85175155-85175174 MS.gene029140:CDS 40.0%
TTTCAGAAATTTGGCCATGC+TGG - chr1.2:85176846-85176865 None:intergenic 40.0%
! CTCTCACCATTGTAGCTTTT+GGG + chr1.2:85177633-85177652 MS.gene029140:intron 40.0%
! TTGATCTAGCACGCCTATTT+TGG - chr1.2:85176888-85176907 None:intergenic 40.0%
! TTTTCCTTTCATCAGGGGTT+AGG + chr1.2:85176653-85176672 MS.gene029140:intron 40.0%
!! ATCTTTGGGCTTTGACTTGT+TGG + chr1.2:85175433-85175452 MS.gene029140:intron 40.0%
!! CAGAGCATTTTTCTTGGTTC+TGG - chr1.2:85177050-85177069 None:intergenic 40.0%
!! GCTGGAAAAATGGAAGTATC+TGG + chr1.2:85177719-85177738 MS.gene029140:CDS 40.0%
!!! TCCTGCCTTTTTTTTTGTGG+GGG - chr1.2:85176547-85176566 None:intergenic 40.0%
AAATCACATCCAGACAGAGG+TGG + chr1.2:85176719-85176738 MS.gene029140:CDS 45.0%
AATTGTAGTCCTCTGCTTGC+TGG - chr1.2:85177760-85177779 None:intergenic 45.0%
AGCAGGACTACTTCCTAAAG+AGG + chr1.2:85175950-85175969 MS.gene029140:intron 45.0%
CAAAATCACCACGGTGATAC+CGG - chr1.2:85175645-85175664 None:intergenic 45.0%
CCAAAAGCTACAATGGTGAG+AGG - chr1.2:85177635-85177654 None:intergenic 45.0%
GACAATGTGGTCATTTCGAG+GGG - chr1.2:85176298-85176317 None:intergenic 45.0%
GCAAGCAGAGGACTACAATT+TGG + chr1.2:85177760-85177779 MS.gene029140:CDS 45.0%
GCAGGACTACTTCCTAAAGA+GGG + chr1.2:85175951-85175970 MS.gene029140:intron 45.0%
GTGACAATGTGGTCATTTCG+AGG - chr1.2:85176300-85176319 None:intergenic 45.0%
TATTCCGTGTTTCCATCGGA+TGG + chr1.2:85177105-85177124 MS.gene029140:CDS 45.0%
TCAAAGCCCAAAGATGAAGG+TGG - chr1.2:85175428-85175447 None:intergenic 45.0%
TCAGGGAATGACTATCTAGC+TGG + chr1.2:85177701-85177720 MS.gene029140:intron 45.0%
TCTGCTCAACAAGATCTTGC+TGG + chr1.2:85175270-85175289 MS.gene029140:CDS 45.0%
TGAATCAGAGGTAGAGACTG+AGG + chr1.2:85176942-85176961 MS.gene029140:CDS 45.0%
TGGAATCTTTGGCGAAACGA+AGG - chr1.2:85175755-85175774 None:intergenic 45.0%
TGTCAGCCCAAAAGCTACAA+TGG - chr1.2:85177642-85177661 None:intergenic 45.0%
TTTGGGCTGACAATCAAGAC+TGG + chr1.2:85177650-85177669 MS.gene029140:intron 45.0%
! AGAGACTGAGGTTGATTCCA+AGG + chr1.2:85176954-85176973 MS.gene029140:CDS 45.0%
! CATGCCACTCAAATTTCTGG+TGG - chr1.2:85177142-85177161 None:intergenic 45.0%
! CCTCTCACCATTGTAGCTTT+TGG + chr1.2:85177632-85177651 MS.gene029140:intron 45.0%
! TCAAGAATCTGGAGCTGAAC+CGG - chr1.2:85176754-85176773 None:intergenic 45.0%
! TCTTTAGGAAGTAGTCCTGC+TGG - chr1.2:85175951-85175970 None:intergenic 45.0%
!! GAGTCATCGTGATTTTGAGG+AGG - chr1.2:85175681-85175700 None:intergenic 45.0%
!!! CCTGCCTTTTTTTTTGTGGG+GGG - chr1.2:85176546-85176565 None:intergenic 45.0%
!! CAAAATAATATAAAAATTAA+AGG - chr1.2:85175341-85175360 None:intergenic 5.0%
!!! CTTTTTAAAAAAAAAAAAAT+TGG - chr1.2:85176350-85176369 None:intergenic 5.0%
!!! TTTTAAAAAAAAAAAAATTG+GGG - chr1.2:85176348-85176367 None:intergenic 5.0%
ACTTGAGGTTCCTCAAGGGA+CGG + chr1.2:85176263-85176282 MS.gene029140:intron 50.0%
CCCCCCACAAAAAAAAAGGC+AGG + chr1.2:85176543-85176562 MS.gene029140:intron 50.0%
CTTTCATCAGGGGTTAGGCT+GGG + chr1.2:85176658-85176677 MS.gene029140:intron 50.0%
GATCTTATACCGCCATCCGA+TGG - chr1.2:85177120-85177139 None:intergenic 50.0%
GATTTCAACTCCGTCCCTTG+AGG - chr1.2:85176276-85176295 None:intergenic 50.0%
GCAGAGGACTACAATTTGGC+AGG + chr1.2:85177764-85177783 MS.gene029140:CDS 50.0%
TTTCATCAGGGGTTAGGCTG+GGG + chr1.2:85176659-85176678 MS.gene029140:intron 50.0%
! TGCGACTCATTGATGACAGC+TGG + chr1.2:85176691-85176710 MS.gene029140:CDS 50.0%
ACCGCCATCCGATGGAAACA+CGG - chr1.2:85177112-85177131 None:intergenic 55.0%
CCAGCCTAACCCCTGATGAA+AGG - chr1.2:85176660-85176679 None:intergenic 55.0%
CCTTTCATCAGGGGTTAGGC+TGG + chr1.2:85176657-85176676 MS.gene029140:intron 55.0%
GCTACTGAACTCAGCCAGCA+TGG + chr1.2:85176829-85176848 MS.gene029140:CDS 55.0%
TCCGTGTTTCCATCGGATGG+CGG + chr1.2:85177108-85177127 MS.gene029140:CDS 55.0%
TGTAGGAGTCCACCTCTGTC+TGG - chr1.2:85176731-85176750 None:intergenic 55.0%
! ACAGAGGTGGACTCCTACAC+CGG + chr1.2:85176732-85176751 MS.gene029140:CDS 55.0%
! ATCTGGAGCTGAACCGGTGT+AGG - chr1.2:85176748-85176767 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 85175108 85177790 85175108 ID=MS.gene029140
chr1.2 mRNA 85175108 85177790 85175108 ID=MS.gene029140.t1;Parent=MS.gene029140
chr1.2 exon 85175108 85175291 85175108 ID=MS.gene029140.t1.exon1;Parent=MS.gene029140.t1
chr1.2 CDS 85175108 85175291 85175108 ID=cds.MS.gene029140.t1;Parent=MS.gene029140.t1
chr1.2 exon 85176668 85177192 85176668 ID=MS.gene029140.t1.exon2;Parent=MS.gene029140.t1
chr1.2 CDS 85176668 85177192 85176668 ID=cds.MS.gene029140.t1;Parent=MS.gene029140.t1
chr1.2 exon 85177705 85177790 85177705 ID=MS.gene029140.t1.exon3;Parent=MS.gene029140.t1
chr1.2 CDS 85177705 85177790 85177705 ID=cds.MS.gene029140.t1;Parent=MS.gene029140.t1
Gene Sequence

>MS.gene029140

ATGGTGAACATGATGGAATGGCAGAAACAACAAGTACAGAATGGGAATGTCGAAGCGATGTATGTTAAGGTGATGACTGATGAACAATTGGAAACTCTGAGGAAACAAATTGCTGTTTATGCTACCATTTGTGAACAGCTTGTTGAGATGCATAAAACTCTCTCTGCTCAACAAGATCTTGCTGGTACTTTTATGTTTTTTTTTACTAATTATTCCCTGATCATAAATTCCCTTTAATTTTTATATTATTTTGCTTTTGGATTGCTTTTCAAAATTGGGAAATTTCTACCTATATATATATATATATATGCACAAAACCACCTTCATCTTTGGGCTTTGACTTGTTGGCCCTTCAATTTTAATTTTAGTAATTAGCTTAAGTTTGAAAGAAAAAAAAAATCATATTTCAGTTTCTGTGTATTTCTCTACATTTTTAGTTGCAAATAAGGTACATAACTTTTTTTAGGGCATGTTTGTAATCACACTAATGAGTTTTTGTTGTAGATGTGTATGTTTGGTATCATAGTAAATTTACCGGTATCACCGTGGTGATTTTGTAGAGATGCTACACCTCCTCAAAATCACGATGACTCAAATTTTTGCAAATTCACCGTGATACCAAATATACACTAAAATACAGTTCTCCTTCGTTTCGCCAAAGATTCCAAATATTTAGTAGTTCTTTGTCAGTGCAATTTATCTCCTATAAATTCCCATTTATTCATTCATATCTGTTCTTGTGTCAGTTGGATTTGTCTGCATCATGTTTAATGTGTAAAGTTAAATGTTAAGTGGCACAGAAAACAAAACCATTTAGGGAAGGGTAAATTGGTACAAACACCAGCAGGACTACTTCCTAAAGAGGGAATGAATGTGTGGATATCCATCATGTTCTAGTGATAATCAAAGCATTCCCTATTACCTAAGGCATCCTGATTTGTAGAAAATGACAATGACACTGCAAAATATCTGCATTATTACTTCATTTCCCTTACATAGAAAAATCAAACCTGGTTGATTTTTTATCTTGTACTTTGCTTTGACTGCTATCTTGTGCAGCATAACCATAAGTACATGAGGTGTTAGCTATATCCAAAGCTTTCAACTTGTCAAGTGAATGTTAAACTAAGTCCACAAGATGTTAACTTAGTTTAAACTTGAGGTTCCTCAAGGGACGGAGTTGAAATCCCCTCGAAATGACCACATTGTCACTGTAATTAATAATAATTTCCTTGTCCCCCAATTTTTTTTTTTTTAAAAAGTGTTTTTTGTTTTTGCATTTAAGAGGATATTATCACTTGATTGAATAAACATACATTTTTGGATAAACGATTATGGAAAATATCGCTTGATTAAATAACAAACATTTTTGGATCTCCTAGAATCAGAAGTACTCTTGAGATTGTATAGATTATAGAACCTTATATTTCTCTTACCCCCCACAAAAAAAAAGGCAGGAATTTGTATCTTTTGGCAATTGGCATATAAAAACTGTCACTTGTTGTTTAAGATCCAGCATTCTCTAAAGAAATGCTAAATGTTATTTTTTCCTTTCATCAGGGGTTAGGCTGGGGAATTTATACTGCGACTCATTGATGACAGCTGGTCACAAAATCACATCCAGACAGAGGTGGACTCCTACACCGGTTCAGCTCCAGATTCTTGAGCGTATATTCGATCAGGGAAATGGAACTCCAAGCAAAGAAAAAATCAAGGAGATTGCTACTGAACTCAGCCAGCATGGCCAAATTTCTGAAACAAATGTTTATAATTGGTTCCAAAATAGGCGTGCTAGATCAAAAAGAAAAATGCAAAATGGGGGAACTAGTAACACTGAATCAGAGGTAGAGACTGAGGTTGATTCCAAGGATAAGAAGACAAAACCAGAGGAATTTCATTCTCAACAAAATGCTGCTCTAGGGGATGAAAATTTGTGCTACCAGAACCAAGAAAAATGCTCTGAATTGCAGTACTTGAATCATGATTCTAACAAAACATATTCCGTGTTTCCATCGGATGGCGGTATAAGATCCACCAGAAATTTGAGTGGCATGTCTCTTTATGATGAAGTGCTATCAAACTCAAGTATGTAACATCTTGTGCTTTCTTCTTTCATTTGTCTTTTCATTGCCTATATTTTTCGTATGATCTTATATTGTAGTTAAATTGACCTTAGAAAGAATCTAGTTGAAATTCGGCAAAATCTTAAACTAGTTCTACCAAGAAGTGTACAAATTTAGGGGTTTATTTTGGATATCTTGATATTATATGACAAATGGACATTAACCTTGGAATACTAATTTGAAGATTTGATTAGGTTTATATTCAATGAGAATAGTAATTAGACACTCTTTTAGAAACACTTTTGAAGATAGTCTTTGTAACAAAATTTGATTTATTTGTCTTGTAATTTAGTCATTTTATAAAAATTGTGTTTAACATTTTAGTAAAGGAACTCACAAAGAATGTCTTGAGAGTTTGTCCAAAAAAATGTTTTACTAGCATTTTCTATTTCTCAAAGTAGCCTCTCACCATTGTAGCTTTTGGGCTGACAATCAAGACTGGTATTGCCATATTCTTTTCCTGATATTTTTCAGGGAATGACTATCTAGCTGGAAAAATGGAAGTATCTGGGAGTTACAATATATACCAGCAAGCAGAGGACTACAATTTGGCAGGTTGA
Protein sequence

>MS.gene029140.t1

MVNMMEWQKQQVQNGNVEAMYVKVMTDEQLETLRKQIAVYATICEQLVEMHKTLSAQQDLAGVRLGNLYCDSLMTAGHKITSRQRWTPTPVQLQILERIFDQGNGTPSKEKIKEIATELSQHGQISETNVYNWFQNRRARSKRKMQNGGTSNTESEVETEVDSKDKKTKPEEFHSQQNAALGDENLCYQNQEKCSELQYLNHDSNKTYSVFPSDGGIRSTRNLSGMSLYDEVLSNSRNDYLAGKMEVSGSYNIYQQAEDYNLAG