Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029173.t1 | XP_013470391.1 | 92.1 | 354 | 19 | 2 | 1 | 352 | 1 | 347 | 1.20E-182 | 649 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029173.t1 | Q9FIM0 | 27.0 | 215 | 137 | 6 | 6 | 217 | 6 | 203 | 7.9e-13 | 76.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029173.t1 | A0A072VR19 | 92.1 | 354 | 19 | 2 | 1 | 352 | 1 | 347 | 8.8e-183 | 649.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene029173.t1 | TF | MADS-M-type |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029173.t1 | MTR_1g114730 | 92.090 | 354 | 19 | 2 | 1 | 352 | 1 | 347 | 0.0 | 655 |
| MS.gene029173.t1 | MTR_6g018920 | 73.596 | 356 | 80 | 3 | 1 | 352 | 1 | 346 | 0.0 | 533 |
| MS.gene029173.t1 | MTR_6g005450 | 61.667 | 360 | 117 | 7 | 1 | 352 | 1 | 347 | 9.66e-145 | 413 |
| MS.gene029173.t1 | MTR_6g005440 | 56.742 | 356 | 109 | 6 | 1 | 352 | 1 | 315 | 5.20e-132 | 379 |
| MS.gene029173.t1 | MTR_4g107170 | 41.935 | 155 | 87 | 1 | 1 | 155 | 1 | 152 | 8.28e-36 | 131 |
| MS.gene029173.t1 | MTR_2g049610 | 43.590 | 156 | 82 | 2 | 1 | 156 | 1 | 150 | 7.02e-34 | 125 |
| MS.gene029173.t1 | MTR_4g045977 | 37.126 | 167 | 102 | 1 | 1 | 167 | 1 | 164 | 1.15e-30 | 120 |
| MS.gene029173.t1 | MTR_2g049530 | 38.365 | 159 | 93 | 2 | 3 | 160 | 5 | 159 | 3.46e-29 | 111 |
| MS.gene029173.t1 | MTR_2g049630 | 37.017 | 181 | 109 | 2 | 2 | 181 | 4 | 180 | 9.48e-29 | 114 |
| MS.gene029173.t1 | MTR_0061s0010 | 42.553 | 141 | 20 | 3 | 29 | 169 | 1 | 80 | 3.45e-22 | 91.3 |
| MS.gene029173.t1 | MTR_1g115290 | 29.371 | 143 | 100 | 1 | 44 | 186 | 8 | 149 | 2.36e-19 | 84.3 |
| MS.gene029173.t1 | MTR_5g075380 | 34.454 | 119 | 70 | 4 | 1 | 118 | 1 | 112 | 1.51e-15 | 73.9 |
| MS.gene029173.t1 | MTR_3g031100 | 35.294 | 102 | 59 | 3 | 1 | 101 | 1 | 96 | 2.49e-14 | 72.0 |
| MS.gene029173.t1 | MTR_3g466980 | 23.478 | 230 | 151 | 8 | 1 | 214 | 1 | 221 | 3.45e-14 | 71.2 |
| MS.gene029173.t1 | MTR_3g102570 | 33.945 | 109 | 64 | 3 | 1 | 109 | 1 | 101 | 3.57e-14 | 72.8 |
| MS.gene029173.t1 | MTR_4g032620 | 35.897 | 117 | 60 | 4 | 1 | 116 | 1 | 103 | 2.43e-13 | 68.9 |
| MS.gene029173.t1 | MTR_3g031240 | 30.088 | 113 | 72 | 3 | 1 | 112 | 1 | 107 | 2.83e-12 | 65.1 |
| MS.gene029173.t1 | MTR_8g086290 | 30.625 | 160 | 84 | 5 | 2 | 144 | 12 | 161 | 3.92e-12 | 64.7 |
| MS.gene029173.t1 | MTR_3g466890 | 34.188 | 117 | 66 | 5 | 3 | 116 | 2 | 110 | 1.65e-11 | 62.4 |
| MS.gene029173.t1 | MTR_2g017865 | 28.025 | 157 | 98 | 4 | 1 | 154 | 16 | 160 | 1.88e-11 | 63.9 |
| MS.gene029173.t1 | MTR_2g016210 | 31.481 | 108 | 66 | 4 | 2 | 108 | 3 | 103 | 3.73e-11 | 62.8 |
| MS.gene029173.t1 | MTR_3g065100 | 25.703 | 249 | 138 | 8 | 1 | 214 | 1 | 237 | 4.94e-11 | 62.8 |
| MS.gene029173.t1 | MTR_1g090710 | 29.464 | 112 | 66 | 4 | 1 | 105 | 1 | 106 | 5.50e-11 | 60.8 |
| MS.gene029173.t1 | MTR_3g466830 | 30.909 | 110 | 69 | 3 | 3 | 111 | 2 | 105 | 5.78e-11 | 60.8 |
| MS.gene029173.t1 | MTR_3g088615 | 27.922 | 154 | 93 | 4 | 1 | 151 | 1 | 139 | 7.28e-11 | 60.8 |
| MS.gene029173.t1 | MTR_8g087860 | 28.289 | 152 | 100 | 3 | 1 | 152 | 17 | 159 | 8.41e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029173.t1 | AT5G55690 | 39.310 | 145 | 80 | 2 | 1 | 144 | 1 | 138 | 2.42e-25 | 103 |
| MS.gene029173.t1 | AT5G55690 | 39.310 | 145 | 80 | 2 | 1 | 144 | 1 | 138 | 2.42e-25 | 103 |
| MS.gene029173.t1 | AT5G58890 | 30.380 | 158 | 105 | 3 | 6 | 160 | 6 | 161 | 3.56e-18 | 84.0 |
| MS.gene029173.t1 | AT3G18650 | 29.240 | 171 | 107 | 5 | 16 | 180 | 31 | 193 | 2.40e-15 | 77.0 |
| MS.gene029173.t1 | AT1G65330 | 33.333 | 111 | 67 | 4 | 3 | 112 | 2 | 106 | 6.63e-13 | 68.6 |
| MS.gene029173.t1 | AT1G65300 | 33.636 | 110 | 64 | 4 | 5 | 112 | 4 | 106 | 7.99e-13 | 68.6 |
| MS.gene029173.t1 | AT1G22590 | 29.677 | 155 | 98 | 3 | 1 | 150 | 1 | 149 | 9.15e-13 | 66.2 |
| MS.gene029173.t1 | AT3G05860 | 37.662 | 77 | 42 | 2 | 1 | 77 | 1 | 71 | 1.67e-12 | 66.2 |
| MS.gene029173.t1 | AT2G28700 | 26.842 | 190 | 117 | 7 | 1 | 182 | 1 | 176 | 2.14e-12 | 67.8 |
| MS.gene029173.t1 | AT3G05860 | 37.662 | 77 | 42 | 2 | 1 | 77 | 1 | 71 | 2.15e-12 | 66.6 |
| MS.gene029173.t1 | AT3G05860 | 37.662 | 77 | 42 | 2 | 1 | 77 | 1 | 71 | 2.47e-12 | 66.6 |
| MS.gene029173.t1 | AT5G23260 | 27.329 | 161 | 100 | 4 | 1 | 157 | 1 | 148 | 5.27e-12 | 65.5 |
| MS.gene029173.t1 | AT5G26650 | 33.333 | 111 | 63 | 4 | 5 | 112 | 3 | 105 | 7.36e-12 | 66.2 |
| MS.gene029173.t1 | AT2G40210 | 31.731 | 104 | 64 | 3 | 1 | 103 | 1 | 98 | 3.03e-11 | 64.3 |
| MS.gene029173.t1 | AT2G03060 | 23.864 | 176 | 119 | 5 | 1 | 173 | 1 | 164 | 3.35e-11 | 64.3 |
| MS.gene029173.t1 | AT2G03060 | 23.864 | 176 | 119 | 5 | 1 | 173 | 1 | 164 | 3.35e-11 | 64.3 |
| MS.gene029173.t1 | AT2G03060 | 23.864 | 176 | 119 | 5 | 1 | 173 | 1 | 164 | 3.35e-11 | 64.3 |
| MS.gene029173.t1 | AT5G27960 | 31.193 | 109 | 68 | 4 | 5 | 112 | 3 | 105 | 3.80e-11 | 63.9 |
| MS.gene029173.t1 | AT5G23260 | 26.901 | 171 | 97 | 5 | 1 | 157 | 17 | 173 | 4.55e-11 | 63.2 |
| MS.gene029173.t1 | AT2G03060 | 23.864 | 176 | 119 | 5 | 1 | 173 | 1 | 164 | 5.04e-11 | 63.9 |
| MS.gene029173.t1 | AT5G13790 | 31.967 | 122 | 74 | 3 | 1 | 122 | 1 | 113 | 6.44e-11 | 62.8 |
| MS.gene029173.t1 | AT4G09960 | 27.215 | 158 | 98 | 5 | 1 | 154 | 1 | 145 | 9.18e-11 | 61.6 |
| MS.gene029173.t1 | AT4G09960 | 27.215 | 158 | 98 | 5 | 1 | 154 | 11 | 155 | 9.25e-11 | 62.0 |
| MS.gene029173.t1 | AT4G09960 | 27.215 | 158 | 98 | 5 | 1 | 154 | 2 | 146 | 9.47e-11 | 61.6 |
Find 78 sgRNAs with CRISPR-Local
Find 92 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCCTTTCCATATTGATTT+TGG | 0.055519 | 1.2:+84852691 | None:intergenic |
| CCACATGGATTTCAACTTAA+TGG | 0.122963 | 1.2:-84852551 | MS.gene029173:CDS |
| TTGTCTTTAGGCCATGTTTC+AGG | 0.191776 | 1.2:+84853355 | None:intergenic |
| TTGATGTTAATGGGGCTAAT+TGG | 0.199081 | 1.2:-84852778 | MS.gene029173:CDS |
| AAATCCACGACCTACAAAAT+TGG | 0.234450 | 1.2:+84853384 | None:intergenic |
| TACAAGAATATTGATGTTAA+TGG | 0.237026 | 1.2:-84852788 | MS.gene029173:CDS |
| GCATTTCCATTGTAATAGTA+TGG | 0.257144 | 1.2:+84852638 | None:intergenic |
| ACTTCCGTGATTTCTCCTTT+TGG | 0.266267 | 1.2:+84853500 | None:intergenic |
| ACAAGAATATTGATGTTAAT+GGG | 0.303821 | 1.2:-84852787 | MS.gene029173:CDS |
| GGTTATCAGGACCGATGCTT+CGG | 0.326389 | 1.2:-84852719 | MS.gene029173:CDS |
| GATATTATTTGCTAGCAAAC+TGG | 0.357133 | 1.2:-84853134 | MS.gene029173:CDS |
| AATGAATCTTTCAATTCTCT+TGG | 0.359377 | 1.2:-84853169 | MS.gene029173:CDS |
| GGGTCGTGGAAGAATATCTA+TGG | 0.367126 | 1.2:-84853530 | MS.gene029173:CDS |
| TGATGTTAATGGGGCTAATT+GGG | 0.367522 | 1.2:-84852777 | MS.gene029173:CDS |
| ATTAACATCAATATTCTTGT+AGG | 0.368101 | 1.2:+84852790 | None:intergenic |
| TGGGGCTAATTGGGCCAATC+AGG | 0.372470 | 1.2:-84852768 | MS.gene029173:CDS |
| AATGTTAATGATACCTATAA+TGG | 0.373254 | 1.2:-84852743 | MS.gene029173:CDS |
| TCTTGAACATCATAGATCTT+AGG | 0.373714 | 1.2:+84853277 | None:intergenic |
| ATGTTAATGATACCTATAAT+GGG | 0.375349 | 1.2:-84852742 | MS.gene029173:CDS |
| ATCATTAACATTAACCTGAT+TGG | 0.375551 | 1.2:+84852754 | None:intergenic |
| ATGGTGCGAGCTTTGTATAT+TGG | 0.377737 | 1.2:+84852850 | None:intergenic |
| CGGGCTTCCCAAAATCAATA+TGG | 0.380849 | 1.2:-84852699 | MS.gene029173:CDS |
| GTTATCAGGACCGATGCTTC+GGG | 0.385864 | 1.2:-84852718 | MS.gene029173:CDS |
| GGGAAAGTGTGCAAGGCAAT+AGG | 0.393610 | 1.2:+84852596 | None:intergenic |
| GATTTGAGAGATTCTGAAAA+GGG | 0.398612 | 1.2:+84852576 | None:intergenic |
| TATGCTAAAAGAAGATCATA+AGG | 0.417664 | 1.2:-84853077 | MS.gene029173:CDS |
| AAGGAAGGATGGAGCTGAAA+AGG | 0.426747 | 1.2:-84852675 | MS.gene029173:CDS |
| TTATCACTAATATTCATCAT+TGG | 0.435936 | 1.2:+84852935 | None:intergenic |
| AACATCAACATCACAAAGAA+TGG | 0.436469 | 1.2:+84853426 | None:intergenic |
| ACTATAACACAACAAATGAT+AGG | 0.448494 | 1.2:-84853303 | MS.gene029173:CDS |
| TTAACATCAATATTCTTGTA+GGG | 0.460944 | 1.2:+84852791 | None:intergenic |
| AATCCACGACCTACAAAATT+GGG | 0.470390 | 1.2:+84853385 | None:intergenic |
| GGAAAGTGTGCAAGGCAATA+GGG | 0.475843 | 1.2:+84852597 | None:intergenic |
| AGATTTGAGAGATTCTGAAA+AGG | 0.476219 | 1.2:+84852575 | None:intergenic |
| TAGTTTCTCTTTACGCACTT+TGG | 0.478267 | 1.2:+84853213 | None:intergenic |
| CAAGCTCATATGTTCATGAA+TGG | 0.478657 | 1.2:-84852506 | MS.gene029173:CDS |
| ATCTATGGAACTCATCCAAA+AGG | 0.478947 | 1.2:-84853515 | MS.gene029173:CDS |
| GAAGTAGTAACTAGGATTCA+AGG | 0.479038 | 1.2:+84853000 | None:intergenic |
| GAAGGTTGAGAGCTTTGTCC+CGG | 0.483719 | 1.2:+84852884 | None:intergenic |
| TTGAAAGATTCATTCCAAGT+TGG | 0.490806 | 1.2:+84853178 | None:intergenic |
| TCACTAATATTCATCATTGG+AGG | 0.494747 | 1.2:+84852938 | None:intergenic |
| ATCAATATGGAAAGGAAGGA+TGG | 0.505258 | 1.2:-84852686 | MS.gene029173:CDS |
| CAAAATCAATATGGAAAGGA+AGG | 0.508161 | 1.2:-84852690 | MS.gene029173:CDS |
| GTCAACATTTCAAAAGAGAA+AGG | 0.514992 | 1.2:-84853479 | MS.gene029173:CDS |
| TTGAAGTGGCCAAAACCCTA+AGG | 0.517435 | 1.2:+84852907 | None:intergenic |
| CTCATATGTTCATGAATGGA+AGG | 0.537554 | 1.2:-84852502 | MS.gene029173:CDS |
| TCGTCACCATACTATTACAA+TGG | 0.539170 | 1.2:-84852644 | MS.gene029173:CDS |
| TAAAGATGATGTATCCAACT+TGG | 0.548629 | 1.2:-84853192 | MS.gene029173:CDS |
| ATCTTTCAATTCTCTTGGAG+CGG | 0.552140 | 1.2:-84853164 | MS.gene029173:CDS |
| ACTTAATGGATTCAATGCTA+AGG | 0.552446 | 1.2:-84852537 | MS.gene029173:CDS |
| ATATTGGAAATCAAAGAAGA+AGG | 0.553651 | 1.2:+84852866 | None:intergenic |
| ATGCTAAAAGAAGATCATAA+GGG | 0.556585 | 1.2:-84853076 | MS.gene029173:CDS |
| ACATTTCAAAAGAGAAAGGA+AGG | 0.560555 | 1.2:-84853475 | MS.gene029173:CDS |
| GAGCTTTGTCCCGGTTGAAG+TGG | 0.560628 | 1.2:+84852893 | None:intergenic |
| ATGAGATTGAAGTAGTAACT+AGG | 0.569090 | 1.2:+84852992 | None:intergenic |
| TGAAGTGGCCAAAACCCTAA+GGG | 0.571128 | 1.2:+84852908 | None:intergenic |
| TATTCGTAGAAAATGGGTCG+TGG | 0.573273 | 1.2:-84853544 | None:intergenic |
| TTCCCAAAATCAATATGGAA+AGG | 0.576621 | 1.2:-84852694 | MS.gene029173:CDS |
| CTCGCACCATGTGGAGTCTG+AGG | 0.578924 | 1.2:-84852837 | MS.gene029173:CDS |
| TGTTAATGATACCTATAATG+GGG | 0.582350 | 1.2:-84852741 | MS.gene029173:CDS |
| CACCATGTGGAGTCTGAGGA+GGG | 0.590680 | 1.2:-84852833 | MS.gene029173:CDS |
| TAACATCAATATTCTTGTAG+GGG | 0.591713 | 1.2:+84852792 | None:intergenic |
| TCATCCAAAAGGAGAAATCA+CGG | 0.593512 | 1.2:-84853504 | MS.gene029173:CDS |
| CTGAAAAGGGAAAGTGTGCA+AGG | 0.597692 | 1.2:+84852589 | None:intergenic |
| ATATGTTTGTGCTTGAGACA+TGG | 0.597890 | 1.2:+84852961 | None:intergenic |
| CAAGAATATTGATGTTAATG+GGG | 0.607609 | 1.2:-84852786 | MS.gene029173:CDS |
| CTATTACAATGGAAATGCAA+TGG | 0.613734 | 1.2:-84852633 | MS.gene029173:CDS |
| GCACCATGTGGAGTCTGAGG+AGG | 0.614956 | 1.2:-84852834 | MS.gene029173:CDS |
| TACCCTCCTCAGACTCCACA+TGG | 0.630866 | 1.2:+84852831 | None:intergenic |
| GATTTGCTGAACCTGAAACA+TGG | 0.641427 | 1.2:-84853366 | MS.gene029173:CDS |
| GAAGTGGCCAAAACCCTAAG+GGG | 0.646061 | 1.2:+84852909 | None:intergenic |
| TAGTAACTAGGATTCAAGGA+AGG | 0.647567 | 1.2:+84853004 | None:intergenic |
| GTTAATGATACCTATAATGG+GGG | 0.651079 | 1.2:-84852740 | MS.gene029173:CDS |
| AATCTCTCAAATCTACCACA+TGG | 0.661283 | 1.2:-84852566 | MS.gene029173:CDS |
| TATACAAAGCTCGCACCATG+TGG | 0.663687 | 1.2:-84852846 | MS.gene029173:CDS |
| AATAGCTCATGAATCACACA+AGG | 0.705760 | 1.2:-84853047 | MS.gene029173:CDS |
| ATGGCCTAAAGACAAAAGAG+AGG | 0.713382 | 1.2:-84853347 | MS.gene029173:CDS |
| CCATTAAGTTGAAATCCATG+TGG | 0.755933 | 1.2:+84852551 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATGTTAATGATACCTATAA+TGG | - | chr1.2:84853285-84853304 | MS.gene029173:CDS | 20.0% |
| !! | ACAAGAATATTGATGTTAAT+GGG | - | chr1.2:84853241-84853260 | MS.gene029173:CDS | 20.0% |
| !! | ATGTTAATGATACCTATAAT+GGG | - | chr1.2:84853286-84853305 | MS.gene029173:CDS | 20.0% |
| !! | ATTAACATCAATATTCTTGT+AGG | + | chr1.2:84853241-84853260 | None:intergenic | 20.0% |
| !! | TACAAGAATATTGATGTTAA+TGG | - | chr1.2:84853240-84853259 | MS.gene029173:CDS | 20.0% |
| !! | TTAACATCAATATTCTTGTA+GGG | + | chr1.2:84853240-84853259 | None:intergenic | 20.0% |
| !! | TTATCACTAATATTCATCAT+TGG | + | chr1.2:84853096-84853115 | None:intergenic | 20.0% |
| ! | AATGAATCTTTCAATTCTCT+TGG | - | chr1.2:84852859-84852878 | MS.gene029173:CDS | 25.0% |
| ! | ACTATAACACAACAAATGAT+AGG | - | chr1.2:84852725-84852744 | MS.gene029173:CDS | 25.0% |
| ! | ATATTGGAAATCAAAGAAGA+AGG | + | chr1.2:84853165-84853184 | None:intergenic | 25.0% |
| ! | ATCATTAACATTAACCTGAT+TGG | + | chr1.2:84853277-84853296 | None:intergenic | 25.0% |
| ! | ATGCTAAAAGAAGATCATAA+GGG | - | chr1.2:84852952-84852971 | MS.gene029173:CDS | 25.0% |
| ! | CAAGAATATTGATGTTAATG+GGG | - | chr1.2:84853242-84853261 | MS.gene029173:CDS | 25.0% |
| ! | TAACATCAATATTCTTGTAG+GGG | + | chr1.2:84853239-84853258 | None:intergenic | 25.0% |
| ! | TATGCTAAAAGAAGATCATA+AGG | - | chr1.2:84852951-84852970 | MS.gene029173:CDS | 25.0% |
| ! | TGTTAATGATACCTATAATG+GGG | - | chr1.2:84853287-84853306 | MS.gene029173:CDS | 25.0% |
| !! | TTGTGTTATAGTACTTTTGA+AGG | + | chr1.2:84852717-84852736 | None:intergenic | 25.0% |
| !!! | TGATGTTCAAGAGTATTTTA+AGG | - | chr1.2:84852762-84852781 | MS.gene029173:CDS | 25.0% |
| !!! | TTCAAGAGTATTTTAAGGAA+AGG | - | chr1.2:84852767-84852786 | MS.gene029173:CDS | 25.0% |
| !!! | TTCCTTTCCATATTGATTTT+GGG | + | chr1.2:84853339-84853358 | None:intergenic | 25.0% |
| AACATCAACATCACAAAGAA+TGG | + | chr1.2:84852605-84852624 | None:intergenic | 30.0% | |
| ACATTTCAAAAGAGAAAGGA+AGG | - | chr1.2:84852553-84852572 | MS.gene029173:CDS | 30.0% | |
| ATGAGATTGAAGTAGTAACT+AGG | + | chr1.2:84853039-84853058 | None:intergenic | 30.0% | |
| ATTAGTGATAAAAACCCCTT+AGG | - | chr1.2:84853105-84853124 | MS.gene029173:CDS | 30.0% | |
| CAAAATCAATATGGAAAGGA+AGG | - | chr1.2:84853338-84853357 | MS.gene029173:CDS | 30.0% | |
| CTATTACAATGGAAATGCAA+TGG | - | chr1.2:84853395-84853414 | MS.gene029173:CDS | 30.0% | |
| GCATTTCCATTGTAATAGTA+TGG | + | chr1.2:84853393-84853412 | None:intergenic | 30.0% | |
| GTCAACATTTCAAAAGAGAA+AGG | - | chr1.2:84852549-84852568 | MS.gene029173:CDS | 30.0% | |
| GTTAATGATACCTATAATGG+GGG | - | chr1.2:84853288-84853307 | MS.gene029173:CDS | 30.0% | |
| TAAAGATGATGTATCCAACT+TGG | - | chr1.2:84852836-84852855 | MS.gene029173:CDS | 30.0% | |
| TCACTAATATTCATCATTGG+AGG | + | chr1.2:84853093-84853112 | None:intergenic | 30.0% | |
| TCTTGAACATCATAGATCTT+AGG | + | chr1.2:84852754-84852773 | None:intergenic | 30.0% | |
| TTAGTGATAAAAACCCCTTA+GGG | - | chr1.2:84853106-84853125 | MS.gene029173:CDS | 30.0% | |
| TTCCCAAAATCAATATGGAA+AGG | - | chr1.2:84853334-84853353 | MS.gene029173:CDS | 30.0% | |
| TTGAAAGATTCATTCCAAGT+TGG | + | chr1.2:84852853-84852872 | None:intergenic | 30.0% | |
| ! | AGATTTGAGAGATTCTGAAA+AGG | + | chr1.2:84853456-84853475 | None:intergenic | 30.0% |
| ! | GATATTATTTGCTAGCAAAC+TGG | - | chr1.2:84852894-84852913 | MS.gene029173:CDS | 30.0% |
| ! | GATTTGAGAGATTCTGAAAA+GGG | + | chr1.2:84853455-84853474 | None:intergenic | 30.0% |
| !! | ACTTAATGGATTCAATGCTA+AGG | - | chr1.2:84853491-84853510 | MS.gene029173:CDS | 30.0% |
| !!! | CTTCCTTTCCATATTGATTT+TGG | + | chr1.2:84853340-84853359 | None:intergenic | 30.0% |
| AAATCCACGACCTACAAAAT+TGG | + | chr1.2:84852647-84852666 | None:intergenic | 35.0% | |
| AATAGCTCATGAATCACACA+AGG | - | chr1.2:84852981-84853000 | MS.gene029173:CDS | 35.0% | |
| AATCCACGACCTACAAAATT+GGG | + | chr1.2:84852646-84852665 | None:intergenic | 35.0% | |
| AATCTCTCAAATCTACCACA+TGG | - | chr1.2:84853462-84853481 | MS.gene029173:CDS | 35.0% | |
| ATATGTTTGTGCTTGAGACA+TGG | + | chr1.2:84853070-84853089 | None:intergenic | 35.0% | |
| ATCAATATGGAAAGGAAGGA+TGG | - | chr1.2:84853342-84853361 | MS.gene029173:CDS | 35.0% | |
| ATCTATGGAACTCATCCAAA+AGG | - | chr1.2:84852513-84852532 | MS.gene029173:CDS | 35.0% | |
| ATCTTTCAATTCTCTTGGAG+CGG | - | chr1.2:84852864-84852883 | MS.gene029173:CDS | 35.0% | |
| CAAGCTCATATGTTCATGAA+TGG | - | chr1.2:84853522-84853541 | MS.gene029173:CDS | 35.0% | |
| CCACATGGATTTCAACTTAA+TGG | - | chr1.2:84853477-84853496 | MS.gene029173:CDS | 35.0% | |
| CTCATATGTTCATGAATGGA+AGG | - | chr1.2:84853526-84853545 | MS.gene029173:CDS | 35.0% | |
| GAAGTAGTAACTAGGATTCA+AGG | + | chr1.2:84853031-84853050 | None:intergenic | 35.0% | |
| TAGTAACTAGGATTCAAGGA+AGG | + | chr1.2:84853027-84853046 | None:intergenic | 35.0% | |
| TAGTTTCTCTTTACGCACTT+TGG | + | chr1.2:84852818-84852837 | None:intergenic | 35.0% | |
| TCATCCAAAAGGAGAAATCA+CGG | - | chr1.2:84852524-84852543 | MS.gene029173:CDS | 35.0% | |
| TCGTCACCATACTATTACAA+TGG | - | chr1.2:84853384-84853403 | MS.gene029173:CDS | 35.0% | |
| TGATGTTAATGGGGCTAATT+GGG | - | chr1.2:84853251-84853270 | MS.gene029173:CDS | 35.0% | |
| TTGATGTTAATGGGGCTAAT+TGG | - | chr1.2:84853250-84853269 | MS.gene029173:CDS | 35.0% | |
| ! | ATAAAAACCCCTTAGGGTTT+TGG | - | chr1.2:84853112-84853131 | MS.gene029173:CDS | 35.0% |
| ! | TGTACCTCTCTTTTGTCTTT+AGG | + | chr1.2:84852688-84852707 | None:intergenic | 35.0% |
| !! | CCATTAAGTTGAAATCCATG+TGG | + | chr1.2:84853480-84853499 | None:intergenic | 35.0% |
| ATGGCCTAAAGACAAAAGAG+AGG | - | chr1.2:84852681-84852700 | MS.gene029173:CDS | 40.0% | |
| TTGTCTTTAGGCCATGTTTC+AGG | + | chr1.2:84852676-84852695 | None:intergenic | 40.0% | |
| ! | ACTTCCGTGATTTCTCCTTT+TGG | + | chr1.2:84852531-84852550 | None:intergenic | 40.0% |
| ! | ATGGTGCGAGCTTTGTATAT+TGG | + | chr1.2:84853181-84853200 | None:intergenic | 40.0% |
| ! | CTCTATGCTCCCAATTTTGT+AGG | - | chr1.2:84852634-84852653 | MS.gene029173:CDS | 40.0% |
| ! | TACCTATAATGGGGGTTATC+AGG | - | chr1.2:84853296-84853315 | MS.gene029173:CDS | 40.0% |
| !! | GATTTGCTGAACCTGAAACA+TGG | - | chr1.2:84852662-84852681 | MS.gene029173:CDS | 40.0% |
| AAGGAAGGATGGAGCTGAAA+AGG | - | chr1.2:84853353-84853372 | MS.gene029173:CDS | 45.0% | |
| CGGGCTTCCCAAAATCAATA+TGG | - | chr1.2:84853329-84853348 | MS.gene029173:CDS | 45.0% | |
| GGGTCGTGGAAGAATATCTA+TGG | - | chr1.2:84852498-84852517 | MS.gene029173:CDS | 45.0% | |
| GTCCTGATAACCCCCATTAT+AGG | + | chr1.2:84853301-84853320 | None:intergenic | 45.0% | |
| TATACAAAGCTCGCACCATG+TGG | - | chr1.2:84853182-84853201 | MS.gene029173:CDS | 45.0% | |
| TGAAGTGGCCAAAACCCTAA+GGG | + | chr1.2:84853123-84853142 | None:intergenic | 45.0% | |
| TTGAAGTGGCCAAAACCCTA+AGG | + | chr1.2:84853124-84853143 | None:intergenic | 45.0% | |
| ! | CTGAAAAGGGAAAGTGTGCA+AGG | + | chr1.2:84853442-84853461 | None:intergenic | 45.0% |
| ! | GGAAAGTGTGCAAGGCAATA+GGG | + | chr1.2:84853434-84853453 | None:intergenic | 45.0% |
| GAAGTGGCCAAAACCCTAAG+GGG | + | chr1.2:84853122-84853141 | None:intergenic | 50.0% | |
| GGTTATCAGGACCGATGCTT+CGG | - | chr1.2:84853309-84853328 | MS.gene029173:CDS | 50.0% | |
| GTTATCAGGACCGATGCTTC+GGG | - | chr1.2:84853310-84853329 | MS.gene029173:CDS | 50.0% | |
| ! | GAAGGTTGAGAGCTTTGTCC+CGG | + | chr1.2:84853147-84853166 | None:intergenic | 50.0% |
| ! | GCTCCCAATTTTGTAGGTCG+TGG | - | chr1.2:84852640-84852659 | MS.gene029173:CDS | 50.0% |
| ! | GGGAAAGTGTGCAAGGCAAT+AGG | + | chr1.2:84853435-84853454 | None:intergenic | 50.0% |
| !! | AGGGTTTTGGCCACTTCAAC+CGG | - | chr1.2:84853125-84853144 | MS.gene029173:CDS | 50.0% |
| !! | TTTTGGGAAGCCCGAAGCAT+CGG | + | chr1.2:84853323-84853342 | None:intergenic | 50.0% |
| CACCATGTGGAGTCTGAGGA+GGG | - | chr1.2:84853195-84853214 | MS.gene029173:CDS | 55.0% | |
| TACCCTCCTCAGACTCCACA+TGG | + | chr1.2:84853200-84853219 | None:intergenic | 55.0% | |
| TGGGGCTAATTGGGCCAATC+AGG | - | chr1.2:84853260-84853279 | MS.gene029173:CDS | 55.0% | |
| ! | GAGCTTTGTCCCGGTTGAAG+TGG | + | chr1.2:84853138-84853157 | None:intergenic | 55.0% |
| !! | GGGTTTTGGCCACTTCAACC+GGG | - | chr1.2:84853126-84853145 | MS.gene029173:CDS | 55.0% |
| CTCGCACCATGTGGAGTCTG+AGG | - | chr1.2:84853191-84853210 | MS.gene029173:CDS | 60.0% | |
| GCACCATGTGGAGTCTGAGG+AGG | - | chr1.2:84853194-84853213 | MS.gene029173:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 84852496 | 84853554 | 84852496 | ID=MS.gene029173 |
| chr1.2 | mRNA | 84852496 | 84853554 | 84852496 | ID=MS.gene029173.t1;Parent=MS.gene029173 |
| chr1.2 | exon | 84852496 | 84853554 | 84852496 | ID=MS.gene029173.t1.exon1;Parent=MS.gene029173.t1 |
| chr1.2 | CDS | 84852496 | 84853554 | 84852496 | ID=cds.MS.gene029173.t1;Parent=MS.gene029173.t1 |
| Gene Sequence |
| Protein sequence |
