Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene029214.t1 | PNY07850.1 | 89.3 | 262 | 21 | 2 | 1 | 260 | 1 | 257 | 1.10E-87 | 333.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene029214.t1 | Q9FMX2 | 68.7 | 233 | 42 | 5 | 33 | 258 | 40 | 248 | 8.3e-60 | 231.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene029214.t1 | A0A2K3NXU1 | 89.3 | 262 | 21 | 2 | 1 | 260 | 1 | 257 | 7.9e-88 | 333.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene029214.t1 | TF | TCP |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene029214.t1 | MTR_1g114380 | 96.552 | 261 | 4 | 3 | 1 | 260 | 1 | 257 | 0.0 | 499 |
MS.gene029214.t1 | MTR_1g038650 | 60.870 | 253 | 53 | 7 | 17 | 258 | 16 | 233 | 1.92e-79 | 239 |
MS.gene029214.t1 | MTR_5g039600 | 65.217 | 115 | 28 | 3 | 8 | 114 | 39 | 149 | 1.11e-41 | 147 |
MS.gene029214.t1 | MTR_2g006150 | 74.737 | 95 | 21 | 1 | 26 | 117 | 121 | 215 | 4.83e-41 | 146 |
MS.gene029214.t1 | MTR_2g006150 | 74.737 | 95 | 21 | 1 | 26 | 117 | 121 | 215 | 5.76e-41 | 147 |
MS.gene029214.t1 | MTR_7g028160 | 56.800 | 125 | 40 | 3 | 1 | 118 | 12 | 129 | 1.21e-37 | 134 |
MS.gene029214.t1 | MTR_4g108370 | 75.309 | 81 | 15 | 1 | 26 | 101 | 86 | 166 | 3.01e-36 | 133 |
MS.gene029214.t1 | MTR_1g063870 | 73.418 | 79 | 17 | 2 | 19 | 94 | 34 | 111 | 1.03e-34 | 124 |
MS.gene029214.t1 | MTR_1g101810 | 62.626 | 99 | 31 | 2 | 10 | 106 | 40 | 134 | 1.45e-32 | 122 |
MS.gene029214.t1 | MTR_1g101810 | 62.626 | 99 | 31 | 2 | 10 | 106 | 70 | 164 | 3.02e-32 | 121 |
MS.gene029214.t1 | MTR_8g033070 | 70.130 | 77 | 23 | 0 | 28 | 104 | 76 | 152 | 1.64e-31 | 119 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene029214.t1 | AT5G23280 | 64.706 | 255 | 56 | 9 | 12 | 258 | 20 | 248 | 3.13e-96 | 283 |
MS.gene029214.t1 | AT5G08330 | 55.351 | 271 | 74 | 8 | 1 | 259 | 1 | 236 | 8.99e-77 | 233 |
MS.gene029214.t1 | AT1G58100 | 77.907 | 86 | 19 | 0 | 33 | 118 | 61 | 146 | 6.80e-41 | 145 |
MS.gene029214.t1 | AT1G72010 | 78.571 | 84 | 17 | 1 | 26 | 109 | 58 | 140 | 2.67e-39 | 140 |
MS.gene029214.t1 | AT1G35560 | 74.444 | 90 | 23 | 0 | 29 | 118 | 52 | 141 | 2.88e-39 | 139 |
MS.gene029214.t1 | AT3G47620 | 76.829 | 82 | 14 | 1 | 25 | 101 | 105 | 186 | 2.12e-37 | 137 |
MS.gene029214.t1 | AT1G69690 | 75.949 | 79 | 14 | 1 | 28 | 101 | 43 | 121 | 8.77e-37 | 132 |
MS.gene029214.t1 | AT3G27010 | 75.342 | 73 | 18 | 0 | 21 | 93 | 67 | 139 | 2.43e-33 | 123 |
MS.gene029214.t1 | AT3G27010 | 75.342 | 73 | 18 | 0 | 21 | 93 | 67 | 139 | 2.43e-33 | 123 |
MS.gene029214.t1 | AT5G51910 | 65.517 | 87 | 30 | 0 | 18 | 104 | 43 | 129 | 6.36e-33 | 122 |
MS.gene029214.t1 | AT5G51910 | 65.517 | 87 | 30 | 0 | 18 | 104 | 43 | 129 | 6.36e-33 | 122 |
MS.gene029214.t1 | AT2G45680 | 62.366 | 93 | 28 | 1 | 27 | 119 | 70 | 155 | 5.32e-32 | 120 |
MS.gene029214.t1 | AT5G41030 | 66.176 | 68 | 23 | 0 | 28 | 95 | 64 | 131 | 8.73e-28 | 107 |
MS.gene029214.t1 | AT2G37000 | 76.271 | 59 | 14 | 0 | 33 | 91 | 44 | 102 | 8.11e-27 | 103 |
MS.gene029214.t1 | AT3G45150 | 42.742 | 124 | 47 | 4 | 21 | 122 | 8 | 129 | 6.92e-21 | 87.0 |
MS.gene029214.t1 | AT1G58100 | 54.651 | 86 | 15 | 1 | 33 | 118 | 61 | 122 | 1.62e-19 | 87.0 |
Find 78 sgRNAs with CRISPR-Local
Find 83 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTTCAACACCGGCGGCTCTT+TGG | 0.201653 | 1.2:+84218688 | MS.gene029214:CDS |
AGGAGAAGGGAGAGAGTTAT+TGG | 0.218287 | 1.2:-84218538 | None:intergenic |
TTACCTGCACGGCCTGATTT+TGG | 0.227364 | 1.2:+84218714 | MS.gene029214:CDS |
TTCAACACCGGCGGCTCTTT+GGG | 0.244327 | 1.2:+84218689 | MS.gene029214:CDS |
CGGCTAGTTGTTGTCGGTTT+GGG | 0.288031 | 1.2:-84218278 | None:intergenic |
TCTCCTACGCCGTTCATTCT+CGG | 0.325836 | 1.2:+84218594 | MS.gene029214:CDS |
AATTTGCTTGCTTCGTTGTC+TGG | 0.328042 | 1.2:+84218939 | MS.gene029214:CDS |
TTCCAGCTCACACGCGAATT+AGG | 0.343017 | 1.2:+84218390 | MS.gene029214:CDS |
ACGGCTAGTTGTTGTCGGTT+TGG | 0.352057 | 1.2:-84218279 | None:intergenic |
TCTCTCTCCGTTTCACTTCG+TGG | 0.367948 | 1.2:+84218513 | MS.gene029214:CDS |
TCTGGTGGACATGGAAATTC+TGG | 0.390225 | 1.2:+84218957 | MS.gene029214:CDS |
TGCTCCTCCGCCGGAAATGA+TGG | 0.394211 | 1.2:+84218773 | MS.gene029214:CDS |
ACAACAGCGTCAACAAGTTA+TGG | 0.416173 | 1.2:+84218869 | MS.gene029214:CDS |
GGTACCGGTGGCGGCGATGA+TGG | 0.418821 | 1.2:-84218466 | None:intergenic |
AAAGACTGAACCATCATTTC+CGG | 0.426674 | 1.2:-84218783 | None:intergenic |
ACACGTGCGGCGCATATGAT+TGG | 0.431664 | 1.2:-84218366 | None:intergenic |
GTGAAGTGGAGGAAGGAGAA+GGG | 0.432577 | 1.2:-84218551 | None:intergenic |
CTCCAAATTTGACCAAAATC+AGG | 0.435338 | 1.2:-84218726 | None:intergenic |
CTCTTTGGGCTTTACCTGCA+CGG | 0.438680 | 1.2:+84218703 | MS.gene029214:CDS |
CGCCGGAGTTGTGCCGGTAC+CGG | 0.440402 | 1.2:-84218481 | None:intergenic |
TGCCGCCGGTGCTCCTCCGC+CGG | 0.444737 | 1.2:+84218764 | MS.gene029214:CDS |
AAAGATGATGCTCTTTCTGT+TGG | 0.447514 | 1.2:+84218660 | MS.gene029214:CDS |
AGTGAAGTGGAGGAAGGAGA+AGG | 0.462868 | 1.2:-84218552 | None:intergenic |
ATCATCGCCGCCACCGGTAC+CGG | 0.463092 | 1.2:+84218468 | MS.gene029214:CDS |
TTTGTCTCAGCAGCAACATC+AGG | 0.466168 | 1.2:+84218803 | MS.gene029214:CDS |
ATATGATTGGCATACGAATA+CGG | 0.468808 | 1.2:-84218353 | None:intergenic |
CAACAGCGTCAACAAGTTAT+GGG | 0.469275 | 1.2:+84218870 | MS.gene029214:CDS |
AGAGTTGGGAATTATCTTCC+TGG | 0.477725 | 1.2:+84218909 | MS.gene029214:CDS |
AGTTGTGCCGGTACCGGTGG+CGG | 0.478006 | 1.2:-84218475 | None:intergenic |
GTTGTTGTTGTGTTTCCGTC+GGG | 0.482911 | 1.2:-84218231 | None:intergenic |
CACAGTAAAGTCGACGGCCG+TGG | 0.489495 | 1.2:+84218327 | MS.gene029214:CDS |
ACCGGTGGCGGCGATGATGG+AGG | 0.492286 | 1.2:-84218463 | None:intergenic |
TGGTCGAGTGAAGTGGAGGA+AGG | 0.494112 | 1.2:-84218558 | None:intergenic |
GACCTAATTCGCGTGTGAGC+TGG | 0.494851 | 1.2:-84218392 | None:intergenic |
CATTTCCGGCGGAGGAGCAC+CGG | 0.501079 | 1.2:-84218769 | None:intergenic |
GCTTCGTTGTCTGGTGGACA+TGG | 0.503221 | 1.2:+84218948 | MS.gene029214:CDS |
CCCTCCATCATCGCCGCCAC+CGG | 0.503587 | 1.2:+84218462 | MS.gene029214:CDS |
GAAGCTTCAGCTGCTAGAGT+TGG | 0.504823 | 1.2:+84218894 | MS.gene029214:CDS |
AAGCTTCAGCTGCTAGAGTT+GGG | 0.504829 | 1.2:+84218895 | MS.gene029214:CDS |
TGATGGAGGGTTCAGCTTGA+CGG | 0.505105 | 1.2:-84218449 | None:intergenic |
CACCGGTACCGGCACAACTC+CGG | 0.512438 | 1.2:+84218479 | MS.gene029214:CDS |
TGACCAAAATCAGGCCGTGC+AGG | 0.513660 | 1.2:-84218717 | None:intergenic |
TAGGAGAGAGAAGCGGTTTG+TGG | 0.517147 | 1.2:-84218578 | None:intergenic |
TTGCTTGCTTCGTTGTCTGG+TGG | 0.525229 | 1.2:+84218942 | MS.gene029214:CDS |
TGAACCATCATTTCCGGCGG+AGG | 0.529418 | 1.2:-84218777 | None:intergenic |
CCATTCGATGGTTTGACCGT+CGG | 0.532798 | 1.2:-84218421 | None:intergenic |
GTTTCCGTCGGGGTTAGACA+TGG | 0.533278 | 1.2:-84218220 | None:intergenic |
CCGGTGGCGGCGATGATGGA+GGG | 0.534932 | 1.2:-84218462 | None:intergenic |
TGTTGGTTCTCTTTCAACAC+CGG | 0.535689 | 1.2:+84218677 | MS.gene029214:CDS |
GTCAATGATTGAACCGTTCG+TGG | 0.543005 | 1.2:-84218256 | None:intergenic |
GGTTGTTGTTGTGTTTCCGT+CGG | 0.546317 | 1.2:-84218232 | None:intergenic |
ATTGGAGCCACGAAGTGAAA+CGG | 0.550877 | 1.2:-84218520 | None:intergenic |
TTCCGGCGGAGGAGCACCGG+CGG | 0.553371 | 1.2:-84218766 | None:intergenic |
GAAACTCGCCGGAGTTGTGC+CGG | 0.558752 | 1.2:-84218487 | None:intergenic |
CGGTTTGTGGTCGAGTGAAG+TGG | 0.560737 | 1.2:-84218565 | None:intergenic |
GCAAGCAAATTGAGATGACC+AGG | 0.567406 | 1.2:-84218927 | None:intergenic |
GCATACGAATACGGCGTCCA+CGG | 0.572506 | 1.2:-84218344 | None:intergenic |
TTGACGGAGGAGCCATTCGA+TGG | 0.578156 | 1.2:-84218433 | None:intergenic |
CGGAGTTGTGCCGGTACCGG+TGG | 0.579827 | 1.2:-84218478 | None:intergenic |
ACAACAACAACCACCACGAA+CGG | 0.583850 | 1.2:+84218243 | MS.gene029214:CDS |
GGTAAAGCCCAAAGAGCCGC+CGG | 0.587790 | 1.2:-84218696 | None:intergenic |
ATACGTTTACCGAGAATGAA+CGG | 0.599547 | 1.2:-84218603 | None:intergenic |
GGCCGTCGACTTTACTGTGA+CGG | 0.604244 | 1.2:-84218323 | None:intergenic |
GAGAGAGAAGAGAAACTCGC+CGG | 0.605189 | 1.2:-84218498 | None:intergenic |
CCGACGGTCAAACCATCGAA+TGG | 0.640967 | 1.2:+84218421 | MS.gene029214:CDS |
TTTGTGGTCGAGTGAAGTGG+AGG | 0.647959 | 1.2:-84218562 | None:intergenic |
TTACCGAGAATGAACGGCGT+AGG | 0.649539 | 1.2:-84218597 | None:intergenic |
TTGTTGTTGTGTTTCCGTCG+GGG | 0.653569 | 1.2:-84218230 | None:intergenic |
GACTGAACCATCATTTCCGG+CGG | 0.662606 | 1.2:-84218780 | None:intergenic |
GACCGTCACAGTAAAGTCGA+CGG | 0.664072 | 1.2:+84218321 | MS.gene029214:CDS |
TGGTTCTCTTTCAACACCGG+CGG | 0.671866 | 1.2:+84218680 | MS.gene029214:CDS |
GTGGACATGGAAATTCTGGT+CGG | 0.673965 | 1.2:+84218961 | MS.gene029214:CDS |
AATGATTGAACCGTTCGTGG+TGG | 0.682160 | 1.2:-84218253 | None:intergenic |
TGTGAGCTGGAAGACACGTG+CGG | 0.686113 | 1.2:-84218379 | None:intergenic |
AAAACCATGTCTAACCCCGA+CGG | 0.687631 | 1.2:+84218216 | None:intergenic |
TGGAGGGTTCAGCTTGACGG+AGG | 0.697001 | 1.2:-84218446 | None:intergenic |
GAATTAGGTCACAAATCCGA+CGG | 0.701084 | 1.2:+84218405 | MS.gene029214:CDS |
AACGGCGTAGGAGAGAGAAG+CGG | 0.760443 | 1.2:-84218585 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
ATATGATTGGCATACGAATA+CGG | - | chr1.2:84218356-84218375 | None:intergenic | 30.0% | |
AAAGACTGAACCATCATTTC+CGG | - | chr1.2:84218786-84218805 | None:intergenic | 35.0% | |
AAAGATGATGCTCTTTCTGT+TGG | + | chr1.2:84218660-84218679 | MS.gene029214:CDS | 35.0% | |
ATACGTTTACCGAGAATGAA+CGG | - | chr1.2:84218606-84218625 | None:intergenic | 35.0% | |
CTCCAAATTTGACCAAAATC+AGG | - | chr1.2:84218729-84218748 | None:intergenic | 35.0% | |
ACAACAGCGTCAACAAGTTA+TGG | + | chr1.2:84218869-84218888 | MS.gene029214:CDS | 40.0% | |
AGAGTTGGGAATTATCTTCC+TGG | + | chr1.2:84218909-84218928 | MS.gene029214:CDS | 40.0% | |
CAACAGCGTCAACAAGTTAT+GGG | + | chr1.2:84218870-84218889 | MS.gene029214:CDS | 40.0% | |
GAATTAGGTCACAAATCCGA+CGG | + | chr1.2:84218405-84218424 | MS.gene029214:CDS | 40.0% | |
! | AATTTGCTTGCTTCGTTGTC+TGG | + | chr1.2:84218939-84218958 | MS.gene029214:CDS | 40.0% |
!! | GGCCTGATTTTGGTCAAATT+TGG | + | chr1.2:84218724-84218743 | MS.gene029214:CDS | 40.0% |
!! | TGTTGGTTCTCTTTCAACAC+CGG | + | chr1.2:84218677-84218696 | MS.gene029214:CDS | 40.0% |
!! | TTTTGACGGCTAGTTGTTGT+CGG | - | chr1.2:84218287-84218306 | None:intergenic | 40.0% |
AAGCTTCAGCTGCTAGAGTT+GGG | + | chr1.2:84218895-84218914 | MS.gene029214:CDS | 45.0% | |
AATGATTGAACCGTTCGTGG+TGG | - | chr1.2:84218256-84218275 | None:intergenic | 45.0% | |
ACAACAACAACCACCACGAA+CGG | + | chr1.2:84218243-84218262 | MS.gene029214:CDS | 45.0% | |
AGGAGAAGGGAGAGAGTTAT+TGG | - | chr1.2:84218541-84218560 | None:intergenic | 45.0% | |
ATTGGAGCCACGAAGTGAAA+CGG | - | chr1.2:84218523-84218542 | None:intergenic | 45.0% | |
GCAAGCAAATTGAGATGACC+AGG | - | chr1.2:84218930-84218949 | None:intergenic | 45.0% | |
GTCAATGATTGAACCGTTCG+TGG | - | chr1.2:84218259-84218278 | None:intergenic | 45.0% | |
GTGGACATGGAAATTCTGGT+CGG | + | chr1.2:84218961-84218980 | MS.gene029214:CDS | 45.0% | |
TTTGTCTCAGCAGCAACATC+AGG | + | chr1.2:84218803-84218822 | MS.gene029214:CDS | 45.0% | |
! | GGTTGTTGTTGTGTTTCCGT+CGG | - | chr1.2:84218235-84218254 | None:intergenic | 45.0% |
! | GTTGTTGTTGTGTTTCCGTC+GGG | - | chr1.2:84218234-84218253 | None:intergenic | 45.0% |
! | TCTGGTGGACATGGAAATTC+TGG | + | chr1.2:84218957-84218976 | MS.gene029214:CDS | 45.0% |
! | TTACTGTGACGGTCTTTTGC+CGG | - | chr1.2:84218315-84218334 | None:intergenic | 45.0% |
! | TTGTTGTTGTGTTTCCGTCG+GGG | - | chr1.2:84218233-84218252 | None:intergenic | 45.0% |
!! | TTTTGCCGGCGGTTTTTTGA+CGG | - | chr1.2:84218301-84218320 | None:intergenic | 45.0% |
ACTAGCCGTCAAAAAACCGC+CGG | + | chr1.2:84218293-84218312 | MS.gene029214:CDS | 50.0% | |
AGTGAAGTGGAGGAAGGAGA+AGG | - | chr1.2:84218555-84218574 | None:intergenic | 50.0% | |
CCATTCGATGGTTTGACCGT+CGG | - | chr1.2:84218424-84218443 | None:intergenic | 50.0% | |
CTCTTTGGGCTTTACCTGCA+CGG | + | chr1.2:84218703-84218722 | MS.gene029214:CDS | 50.0% | |
GAAGCTTCAGCTGCTAGAGT+TGG | + | chr1.2:84218894-84218913 | MS.gene029214:CDS | 50.0% | |
GACCGTCACAGTAAAGTCGA+CGG | + | chr1.2:84218321-84218340 | MS.gene029214:CDS | 50.0% | |
GACTGAACCATCATTTCCGG+CGG | - | chr1.2:84218783-84218802 | None:intergenic | 50.0% | |
GAGAGAGAAGAGAAACTCGC+CGG | - | chr1.2:84218501-84218520 | None:intergenic | 50.0% | |
GTGAAGTGGAGGAAGGAGAA+GGG | - | chr1.2:84218554-84218573 | None:intergenic | 50.0% | |
TAGGAGAGAGAAGCGGTTTG+TGG | - | chr1.2:84218581-84218600 | None:intergenic | 50.0% | |
TCTCCTACGCCGTTCATTCT+CGG | + | chr1.2:84218594-84218613 | MS.gene029214:CDS | 50.0% | |
TCTCTCTCCGTTTCACTTCG+TGG | + | chr1.2:84218513-84218532 | MS.gene029214:CDS | 50.0% | |
TGATGGAGGGTTCAGCTTGA+CGG | - | chr1.2:84218452-84218471 | None:intergenic | 50.0% | |
TGGTTCTCTTTCAACACCGG+CGG | + | chr1.2:84218680-84218699 | MS.gene029214:CDS | 50.0% | |
TTACCGAGAATGAACGGCGT+AGG | - | chr1.2:84218600-84218619 | None:intergenic | 50.0% | |
TTCCAGCTCACACGCGAATT+AGG | + | chr1.2:84218390-84218409 | MS.gene029214:CDS | 50.0% | |
TTGCTTGCTTCGTTGTCTGG+TGG | + | chr1.2:84218942-84218961 | MS.gene029214:CDS | 50.0% | |
TTTGTGGTCGAGTGAAGTGG+AGG | - | chr1.2:84218565-84218584 | None:intergenic | 50.0% | |
! | ACGGCTAGTTGTTGTCGGTT+TGG | - | chr1.2:84218282-84218301 | None:intergenic | 50.0% |
! | TTACCTGCACGGCCTGATTT+TGG | + | chr1.2:84218714-84218733 | MS.gene029214:CDS | 50.0% |
!! | CGGCTAGTTGTTGTCGGTTT+GGG | - | chr1.2:84218281-84218300 | None:intergenic | 50.0% |
AACGGCGTAGGAGAGAGAAG+CGG | - | chr1.2:84218588-84218607 | None:intergenic | 55.0% | |
ACACGTGCGGCGCATATGAT+TGG | - | chr1.2:84218369-84218388 | None:intergenic | 55.0% | |
CCGACGGTCAAACCATCGAA+TGG | + | chr1.2:84218421-84218440 | MS.gene029214:CDS | 55.0% | |
CGGTTTGTGGTCGAGTGAAG+TGG | - | chr1.2:84218568-84218587 | None:intergenic | 55.0% | |
GACCTAATTCGCGTGTGAGC+TGG | - | chr1.2:84218395-84218414 | None:intergenic | 55.0% | |
GCATACGAATACGGCGTCCA+CGG | - | chr1.2:84218347-84218366 | None:intergenic | 55.0% | |
TGAACCATCATTTCCGGCGG+AGG | - | chr1.2:84218780-84218799 | None:intergenic | 55.0% | |
TGACCAAAATCAGGCCGTGC+AGG | - | chr1.2:84218720-84218739 | None:intergenic | 55.0% | |
TGGTCGAGTGAAGTGGAGGA+AGG | - | chr1.2:84218561-84218580 | None:intergenic | 55.0% | |
TGTGAGCTGGAAGACACGTG+CGG | - | chr1.2:84218382-84218401 | None:intergenic | 55.0% | |
TTCAACACCGGCGGCTCTTT+GGG | + | chr1.2:84218689-84218708 | MS.gene029214:CDS | 55.0% | |
TTGACGGAGGAGCCATTCGA+TGG | - | chr1.2:84218436-84218455 | None:intergenic | 55.0% | |
TTTCAACACCGGCGGCTCTT+TGG | + | chr1.2:84218688-84218707 | MS.gene029214:CDS | 55.0% | |
! | GCTTCGTTGTCTGGTGGACA+TGG | + | chr1.2:84218948-84218967 | MS.gene029214:CDS | 55.0% |
!! | GGCCGTCGACTTTACTGTGA+CGG | - | chr1.2:84218326-84218345 | None:intergenic | 55.0% |
CACAGTAAAGTCGACGGCCG+TGG | + | chr1.2:84218327-84218346 | MS.gene029214:CDS | 60.0% | |
GAAACTCGCCGGAGTTGTGC+CGG | - | chr1.2:84218490-84218509 | None:intergenic | 60.0% | |
GGTAAAGCCCAAAGAGCCGC+CGG | - | chr1.2:84218699-84218718 | None:intergenic | 60.0% | |
TGCTCCTCCGCCGGAAATGA+TGG | + | chr1.2:84218773-84218792 | MS.gene029214:CDS | 60.0% | |
TGGAGGGTTCAGCTTGACGG+AGG | - | chr1.2:84218449-84218468 | None:intergenic | 60.0% | |
! | CTGTGACGGTCTTTTGCCGG+CGG | - | chr1.2:84218312-84218331 | None:intergenic | 60.0% |
ATCATCGCCGCCACCGGTAC+CGG | + | chr1.2:84218468-84218487 | MS.gene029214:CDS | 65.0% | |
TTTGCTGCTGCTGCTGCCGC+CGG | + | chr1.2:84218750-84218769 | MS.gene029214:CDS | 65.0% | |
! | CATTTCCGGCGGAGGAGCAC+CGG | - | chr1.2:84218772-84218791 | None:intergenic | 65.0% |
!! | AGTTGTGCCGGTACCGGTGG+CGG | - | chr1.2:84218478-84218497 | None:intergenic | 65.0% |
!! | CACCGGTACCGGCACAACTC+CGG | + | chr1.2:84218479-84218498 | MS.gene029214:CDS | 65.0% |
CCCTCCATCATCGCCGCCAC+CGG | + | chr1.2:84218462-84218481 | MS.gene029214:CDS | 70.0% | |
! | ACCGGTGGCGGCGATGATGG+AGG | - | chr1.2:84218466-84218485 | None:intergenic | 70.0% |
! | CGCCGGAGTTGTGCCGGTAC+CGG | - | chr1.2:84218484-84218503 | None:intergenic | 70.0% |
! | CGGAGTTGTGCCGGTACCGG+TGG | - | chr1.2:84218481-84218500 | None:intergenic | 70.0% |
!! | CCGGTGGCGGCGATGATGGA+GGG | - | chr1.2:84218465-84218484 | None:intergenic | 70.0% |
!! | GGTACCGGTGGCGGCGATGA+TGG | - | chr1.2:84218469-84218488 | None:intergenic | 70.0% |
!! | TTCCGGCGGAGGAGCACCGG+CGG | - | chr1.2:84218769-84218788 | None:intergenic | 75.0% |
! | TGCCGCCGGTGCTCCTCCGC+CGG | + | chr1.2:84218764-84218783 | MS.gene029214:CDS | 80.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.2 | gene | 84218222 | 84219004 | 84218222 | ID=MS.gene029214 |
chr1.2 | mRNA | 84218222 | 84219004 | 84218222 | ID=MS.gene029214.t1;Parent=MS.gene029214 |
chr1.2 | exon | 84218222 | 84219004 | 84218222 | ID=MS.gene029214.t1.exon1;Parent=MS.gene029214.t1 |
chr1.2 | CDS | 84218222 | 84219004 | 84218222 | ID=cds.MS.gene029214.t1;Parent=MS.gene029214.t1 |
Gene Sequence |
Protein sequence |